Contig-U14734-1 |
Contig ID |
Contig-U14734-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
712 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
2153039 |
End point |
2153756 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
11 |
Number of EST |
11 |
Link to clone list |
U14734 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.30 |
Homology vs DNA |
Query= Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Contig-U14734-1Q.Seq.d (712 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU267717) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 7 (BJ428981) Dictyostelium discoideum cDNA clone:ddv1o20, 3' e... 660 0.0 6 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 710 0.0 7 (BJ431559) Dictyostelium discoideum cDNA clone:ddv14i16, 3' ... 630 0.0 7 (BJ427967) Dictyostelium discoideum cDNA clone:ddv10b12, 3' ... 628 0.0 7 (BJ434923) Dictyostelium discoideum cDNA clone:ddv25o08, 3' ... 624 0.0 7 (BJ429766) Dictyostelium discoideum cDNA clone:ddv4f19, 3' e... 660 0.0 7 (AU265863) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 4 (AU265619) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 2 (BJ444903) Dictyostelium discoideum cDNA clone:ddv57f20, 3' ... 599 0.0 7 (BJ435229) Dictyostelium discoideum cDNA clone:ddv26b13, 3' ... 648 0.0 5 (BJ430094) Dictyostelium discoideum cDNA clone:ddv6g02, 3' e... 652 0.0 4 (AE000783) Borrelia burgdorferi B31, complete genome. 36 0.19 10 (DL005609) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 42 0.24 5 (CS459534) Sequence 15 from Patent WO2006117596. 42 0.24 5 (AC007537) Homo sapiens 12 BAC RPCI11-267J23 (Roswell Park C... 42 0.36 5 (AC166960) Bos taurus clone CH240-187C10, WORKING DRAFT SEQU... 48 0.45 1 (CU459199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.46 4 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 0.72 9 (CU678447) Synthetic construct Homo sapiens gateway clone IM... 38 1.7 2 (CU640428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 5 (AF152244) Acropora tenuis cytochrome b (cytb), NADH dehydro... 40 2.6 3 (AX344564) Sequence 15 from Patent WO0200932. 36 2.8 8 (AC156526) Bos taurus clone CH240-54O2, WORKING DRAFT SEQUEN... 36 3.4 3 (AC214188) Pan troglodytes chromosome 12 clone CH251-643M17,... 42 3.6 3 (AC180753) Strongylocentrotus purpuratus clone R3-3077H15, W... 40 4.1 4 (CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 4.8 7 (AC007799) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 34 5.7 6 (AC179261) Strongylocentrotus purpuratus clone R3-42O22, WOR... 42 6.7 7 (CR388417) Zebrafish DNA sequence from clone DKEY-211M6 in l... 44 7.1 1 (AM467647) Vitis vinifera contig VV78X254550.2, whole genome... 44 7.1 1 (AC202494) Medicago truncatula clone mth2-25j15, complete se... 44 7.1 1 (AB018112) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 7.1 1 (AC190392) Canis Familiaris chromosome 29, clone XX-183G5, c... 44 7.1 1 (AC187306) Canis Familiaris chromosome 3, clone XX-393O18, c... 44 7.1 1 (AL121955) Human DNA sequence from clone RP1-62D2 on chromos... 44 7.1 1 (AC092378) Homo sapiens chromosome 16 clone RP11-700H13, com... 44 7.1 1 (AC018765) Homo sapiens chromosome 5 clone CTD-2351A16, comp... 44 7.1 1 (AC012183) Homo sapiens chromosome 16 clone RP11-451N19, com... 44 7.1 1 (AC010418) Homo sapiens chromosome 5 clone CTD-2177G22, comp... 44 7.1 1 (CU694953) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1 (CU694301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.1 1 (CU657923) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1 (CT573368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1 (AL137838) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 7.1 1 (AC224627) Bos taurus clone CH240-480C6, WORKING DRAFT SEQUE... 44 7.1 1 (AC218305) Bos taurus clone CH240-288C7, WORKING DRAFT SEQUE... 44 7.1 1 (AZ903922) RPCI-24-216O22.TJ RPCI-24 Mus musculus genomic cl... 44 7.1 1 (AM607102) Entamoeba invadens IP1 GSS, clone inv074f05.q1k. 44 7.1 1 (CT555735) A BAC library has been constructed from cultivar ... 44 7.1 1 (AG554813) Mus musculus molossinus DNA, clone:MSMg01-472D16.... 44 7.1 1 (CE841386) tigr-gss-dog-17000332660447 Dog Library Canis lup... 44 7.1 1 (B27642) T12C7TRB TAMU Arabidopsis thaliana genomic clone T1... 44 7.1 1 (BZ836863) CH240_288C7.TV CHORI-240 Bos taurus genomic clone... 44 7.1 1 (BA000019) Nostoc sp. PCC 7120 DNA, complete genome. 44 7.1 1 (CU655934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.4 3 (AF338425) Acropora tenuis mitochondrion, complete genome. 40 7.5 3 (AX344569) Sequence 20 from Patent WO0200932. 34 7.8 8 (AC177069) Strongylocentrotus purpuratus clone R3-4004J14, W... 40 8.8 4 (AB017066) Arabidopsis thaliana genomic DNA, chromosome 5, P... 36 8.9 4 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 9.6 7 (CK524097) rswea0_010512.y1 swe Bombyx mori cDNA, mRNA seque... 32 9.8 3
>(AU267717) Dictyostelium discoideum vegetative cDNA clone:VSH619, 3' end single read. Length = 608
Score = 710 bits (358), Expect(7) = 0.0 Identities = 358/358 (100%) Strand = Plus / Plus
Query: 299 gtaattacaattggattctttattacattctgtgcacatgtaatgctatcaagttcaaag 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 231 gtaattacaattggattctttattacattctgtgcacatgtaatgctatcaagttcaaag 290
Query: 359 ttttcacaatatctttttatttttggtgcaatagttagtagtattgttccatgtgtttcg 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 291 ttttcacaatatctttttatttttggtgcaatagttagtagtattgttccatgtgtttcg 350
Query: 419 aatttattatgctctgtaatatctaaatctacacctcaagaagttcaaggatcagtatta 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 351 aatttattatgctctgtaatatctaaatctacacctcaagaagttcaaggatcagtatta 410
Query: 479 acaggtcttcaatctgtaaaagcacttggtagctttgctggtgccatggtagctaataat 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 411 acaggtcttcaatctgtaaaagcacttggtagctttgctggtgccatggtagctaataat 470
Query: 539 ttactaagtcatttctcaagtgatgaatcatcgatttactttcctcaagctatctatttt 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 471 ttactaagtcatttctcaagtgatgaatcatcgatttactttcctcaagctatctatttt 530
Query: 599 ttaaatggtgttgtattatttataataatgatcatttctattttagtttggagatttt 656 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 531 ttaaatggtgttgtattatttataataatgatcatttctattttagtttggagatttt 588
Score = 105 bits (53), Expect(7) = 0.0 Identities = 53/53 (100%) Strand = Plus / Plus
Query: 193 aatcaaaaaacaattggtctttttactcttggtgttggtggtgcaacaatttt 245 ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 126 aatcaaaaaacaattggtctttttactcttggtgttggtggtgcaacaatttt 178
Score = 95.6 bits (48), Expect(7) = 0.0 Identities = 48/48 (100%) Strand = Plus / Plus
Query: 243 ttttatatagtgttttaattgttccattatttttaaaagttttatctg 290 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 175 ttttatatagtgttttaattgttccattatttttaaaagttttatctg 222
Score = 69.9 bits (35), Expect(7) = 0.0 Identities = 35/35 (100%) Strand = Plus / Plus
Query: 159 ttttactattactcatatctaatgtataactggaa 193 ||||||||||||||||||||||||||||||||||| Sbjct: 93 ttttactattactcatatctaatgtataactggaa 127
Score = 65.9 bits (33), Expect(7) = 0.0 Identities = 33/33 (100%) Strand = Plus / Plus
Query: 129 aatatactggtcaagatatctggtcaacctttt 161 ||||||||||||||||||||||||||||||||| Sbjct: 64 aatatactggtcaagatatctggtcaacctttt 96
Score = 58.0 bits (29), Expect(7) = 0.0 Identities = 29/29 (100%) Strand = Plus / Plus
Query: 64 ttaaaagtttattcacaaataatggtttt 92 ||||||||||||||||||||||||||||| Sbjct: 1 ttaaaagtttattcacaaataatggtttt 29
Score = 50.1 bits (25), Expect(7) = 0.0 Identities = 25/25 (100%) Strand = Plus / Plus
Query: 90 ttttatttcttggacaattttatta 114 ||||||||||||||||||||||||| Sbjct: 26 ttttatttcttggacaattttatta 50
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 845,772,273 Number of extensions: 58153577 Number of successful extensions: 4639831 Number of sequences better than 10.0: 62 Length of query: 712 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 688 Effective length of database: 97,308,875,965 Effective search space: 66948506663920 Effective search space used: 66948506663920 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.12 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
3 |
VH (FL, L) |
1 |
VF (FL, S) |
7 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |