Contig-U14734-1
Contig ID Contig-U14734-1
Contig update 2002.12.18
Contig sequence
>Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Contig-U14734-1Q.Seq.d
AAAATAATAAAAATAAAACTTTTGTAAAAAAAAGTTTTGAAAATCCAAAT
CCATTCTCAACTATTAAAAGTTTATTCACAAATAATGGTTTTTATTTCTT
GGACAATTTTATTATTTTTTTCAATTCAAATATACTGGTCAAGATATCTG
GTCAACCTTTTTACTATTACTCATATCTAATGTATAACTGGAAATCAAAA
AACAATTGGTCTTTTTACTCTTGGTGTTGGTGGTGCAACAATTTTTATAT
AGTGTTTTAATTGTTCCATTATTTTTAAAAGTTTTATCTGAAAAAAAAGT
AATTACAATTGGATTCTTTATTACATTCTGTGCACATGTAATGCTATCAA
GTTCAAAGTTTTCACAATATCTTTTTATTTTTGGTGCAATAGTTAGTAGT
ATTGTTCCATGTGTTTCGAATTTATTATGCTCTGTAATATCTAAATCTAC
ACCTCAAGAAGTTCAAGGATCAGTATTAACAGGTCTTCAATCTGTAAAAG
CACTTGGTAGCTTTGCTGGTGCCATGGTAGCTAATAATTTACTAAGTCAT
TTCTCAAGTGATGAATCATCGATTTACTTTCCTCAAGCTATCTATTTTTT
AAATGGTGTTGTATTATTTATAATAATGATCATTTCTATTTTAGTTTGGA
GATTTTATAAAAACAAAATCAAAAATAATGTAAGCAATAATAACAATAAA
TAAAATTAAAAA

Gap no gap
Contig length 712
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 2153039
End point 2153756
Strand (PLUS/MINUS) PLUS
Number of clones 11
Number of EST 11
Link to clone list U14734
List of clone(s)

est1=VHN475Z,1,615
est2=VFM232Z,3,619
est3=VFE841Z,7,718
est4=VFG661Z,12,622
est5=VFA280Z,49,641
est6=VFB775Z,67,637
est7=VSH619Z,70,682
est8=VFM749Z,109,631
est9=VSF833Z,152,674
est10=VSF685Z,169,668
est11=VFC604Z,170,633
Translated Amino Acid sequence
k**k*nfckkkf*ksksilny*kfihk*wflflgqfyyffqfkytgqdiwstfllllisn
v*LEIKKQLVFLLLVLVVQQFLYSVLIVPLFLKVLSEKKVITIGFFITFCAHVMLSSSKF
SQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLTGLQSVKALGSFAGAMVANNL
LSHFSSDESSIYFPQAIYFLNGVVLFIIMIISILVWRFYKNKIKNNVSNNNNK*n*k


Translated Amino Acid sequence (All Frames)
Frame A:
kiikikll*kkvlkiqihsqllkvysqimvfiswtillffsiqiywsrylvnlftithi*
citgnqktiglftlgvggatifi*cfncsiifksfi*kksnynwilyyilctcnaikfkv
ftisfyfwcns**ycsmcfefimlcni*iytsrssrisinrssickstw*lcwchgs**f
tksflk**iidllsssylffkwcciiynndhfyfsleil*kqnqk*ckq**q*iklk


Frame B:
k**k*nfckkkf*ksksilny*kfihk*wflflgqfyyffqfkytgqdiwstfllllisn
v*LEIKKQLVFLLLVLVVQQFLYSVLIVPLFLKVLSEKKVITIGFFITFCAHVMLSSSKF
SQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLTGLQSVKALGSFAGAMVANNL
LSHFSSDESSIYFPQAIYFLNGVVLFIIMIISILVWRFYKNKIKNNVSNNNNK*n*k


Frame C:
nnknktfvkksfenpnpfstikslftnngfyfldnfiiffnsnilvkisgqpfyyysylm
ynwksknnwsfyswcwwcnnfyivf*lfhyf*kfylkkk*lqldsllhsvhm*cyqvqsf
hniflflvq*lvvlfhvfriyyal*ylnlhlkkfkdqy*qvfnl*khlvallvpw*liiy
*visqvmnhrftflklsif*mvlyyl***sflf*fgdfiktkskim*aiitinkik


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14734-1 (Contig-U14734-1Q)
/CSM_Contig/Contig-U14734-1Q.Seq.d
(712 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Conti... 1126 0.0
Contig-U01586-1 (Contig-U01586-1Q) /CSM_Contig/Conti... 36 0.050
Contig-U01311-1 (Contig-U01311-1Q) /CSM_Contig/Conti... 36 0.050
Contig-U14159-1 (Contig-U14159-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U14022-1 (Contig-U14022-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U12948-1 (Contig-U12948-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U11881-1 (Contig-U11881-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U11419-1 (Contig-U11419-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U10358-1 (Contig-U10358-1Q) /CSM_Contig/Conti... 34 0.20
Contig-U03441-1 (Contig-U03441-1Q) /CSM_Contig/Conti... 34 0.20

>Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Contig-U14734-1Q.Seq.d
Length = 712

Score = 1126 bits (568), Expect = 0.0
Identities = 598/613 (97%)
Strand = Plus / Plus


Query: 44 tccaaatccattctcaactattaaaagtttattcacaaataatggtttttatttcttgga 103
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 44 tccaaatccattctcaactattaaaagtttattcacaaataatggtttttatttcttgga 103


Query: 104 caattttattannnnnnncaattcaaatatactggtcaagatatctggtcaaccttttta 163
||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 104 caattttattatttttttcaattcaaatatactggtcaagatatctggtcaaccttttta 163


Query: 164 ctattactcatatctaatgtataactggaaatcaaaaaacaattggtctttttactcttg 223
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 164 ctattactcatatctaatgtataactggaaatcaaaaaacaattggtctttttactcttg 223


Query: 224 gtgttggtggtgcaacaatttttatatagtgttttaattgttccattatttttaaaagtt 283
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 224 gtgttggtggtgcaacaatttttatatagtgttttaattgttccattatttttaaaagtt 283


Query: 284 ttatctgnnnnnnnngtaattacaattggattctttattacattctgtgcacatgtaatg 343
||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 ttatctgaaaaaaaagtaattacaattggattctttattacattctgtgcacatgtaatg 343


Query: 344 ctatcaagttcaaagttttcacaatatctttttatttttggtgcaatagttagtagtatt 403
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 ctatcaagttcaaagttttcacaatatctttttatttttggtgcaatagttagtagtatt 403


Query: 404 gttccatgtgtttcgaatttattatgctctgtaatatctaaatctacacctcaagaagtt 463
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 404 gttccatgtgtttcgaatttattatgctctgtaatatctaaatctacacctcaagaagtt 463


Query: 464 caaggatcagtattaacaggtcttcaatctgtaaaagcacttggtagctttgctggtgcc 523
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 464 caaggatcagtattaacaggtcttcaatctgtaaaagcacttggtagctttgctggtgcc 523


Query: 524 atggtagctaataatttactaagtcatttctcaagtgatgaatcatcgatttactttcct 583
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 524 atggtagctaataatttactaagtcatttctcaagtgatgaatcatcgatttactttcct 583


Query: 584 caagctatctattttttaaatggtgttgtattatttataataatgatcatttctatttta 643
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 584 caagctatctattttttaaatggtgttgtattatttataataatgatcatttctatttta 643


Query: 644 gtttggagatttt 656
|||||||||||||
Sbjct: 644 gtttggagatttt 656


>Contig-U01586-1 (Contig-U01586-1Q) /CSM_Contig/Contig-U01586-1Q.Seq.d
Length = 1237

Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 490 atctgtaaaagcacttgg 507
||||||||||||||||||
Sbjct: 468 atctgtaaaagcacttgg 485


>Contig-U01311-1 (Contig-U01311-1Q) /CSM_Contig/Contig-U01311-1Q.Seq.d
Length = 187

Score = 36.2 bits (18), Expect = 0.050
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 268 attatttttaaaagtttt 285
||||||||||||||||||
Sbjct: 113 attatttttaaaagtttt 96


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,589
Number of Sequences: 6905
Number of extensions: 14589
Number of successful extensions: 1119
Number of sequences better than 10.0: 115
length of query: 712
length of database: 5,674,871
effective HSP length: 16
effective length of query: 696
effective length of database: 5,564,391
effective search space: 3872816136
effective search space used: 3872816136
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.30
Homology vs DNA
Query= Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Contig-U14734-1Q.Seq.d
(712 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU267717) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 7
(BJ428981) Dictyostelium discoideum cDNA clone:ddv1o20, 3' e... 660 0.0 6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 710 0.0 7
(BJ431559) Dictyostelium discoideum cDNA clone:ddv14i16, 3' ... 630 0.0 7
(BJ427967) Dictyostelium discoideum cDNA clone:ddv10b12, 3' ... 628 0.0 7
(BJ434923) Dictyostelium discoideum cDNA clone:ddv25o08, 3' ... 624 0.0 7
(BJ429766) Dictyostelium discoideum cDNA clone:ddv4f19, 3' e... 660 0.0 7
(AU265863) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 4
(AU265619) Dictyostelium discoideum vegetative cDNA clone:VS... 710 0.0 2
(BJ444903) Dictyostelium discoideum cDNA clone:ddv57f20, 3' ... 599 0.0 7
(BJ435229) Dictyostelium discoideum cDNA clone:ddv26b13, 3' ... 648 0.0 5
(BJ430094) Dictyostelium discoideum cDNA clone:ddv6g02, 3' e... 652 0.0 4
(AE000783) Borrelia burgdorferi B31, complete genome. 36 0.19 10
(DL005609) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES. 42 0.24 5
(CS459534) Sequence 15 from Patent WO2006117596. 42 0.24 5
(AC007537) Homo sapiens 12 BAC RPCI11-267J23 (Roswell Park C... 42 0.36 5
(AC166960) Bos taurus clone CH240-187C10, WORKING DRAFT SEQU... 48 0.45 1
(CU459199) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 0.46 4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 42 0.72 9
(CU678447) Synthetic construct Homo sapiens gateway clone IM... 38 1.7 2
(CU640428) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 2.5 5
(AF152244) Acropora tenuis cytochrome b (cytb), NADH dehydro... 40 2.6 3
(AX344564) Sequence 15 from Patent WO0200932. 36 2.8 8
(AC156526) Bos taurus clone CH240-54O2, WORKING DRAFT SEQUEN... 36 3.4 3
(AC214188) Pan troglodytes chromosome 12 clone CH251-643M17,... 42 3.6 3
(AC180753) Strongylocentrotus purpuratus clone R3-3077H15, W... 40 4.1 4
(CR382400) Plasmodium falciparum chromosome 6, complete sequ... 36 4.8 7
(AC007799) Homo sapiens chromosome 4, *** SEQUENCING IN PROG... 34 5.7 6
(AC179261) Strongylocentrotus purpuratus clone R3-42O22, WOR... 42 6.7 7
(CR388417) Zebrafish DNA sequence from clone DKEY-211M6 in l... 44 7.1 1
(AM467647) Vitis vinifera contig VV78X254550.2, whole genome... 44 7.1 1
(AC202494) Medicago truncatula clone mth2-25j15, complete se... 44 7.1 1
(AB018112) Arabidopsis thaliana genomic DNA, chromosome 5, P... 44 7.1 1
(AC190392) Canis Familiaris chromosome 29, clone XX-183G5, c... 44 7.1 1
(AC187306) Canis Familiaris chromosome 3, clone XX-393O18, c... 44 7.1 1
(AL121955) Human DNA sequence from clone RP1-62D2 on chromos... 44 7.1 1
(AC092378) Homo sapiens chromosome 16 clone RP11-700H13, com... 44 7.1 1
(AC018765) Homo sapiens chromosome 5 clone CTD-2351A16, comp... 44 7.1 1
(AC012183) Homo sapiens chromosome 16 clone RP11-451N19, com... 44 7.1 1
(AC010418) Homo sapiens chromosome 5 clone CTD-2177G22, comp... 44 7.1 1
(CU694953) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1
(CU694301) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.1 1
(CU657923) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1
(CT573368) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 44 7.1 1
(AL137838) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 7.1 1
(AC224627) Bos taurus clone CH240-480C6, WORKING DRAFT SEQUE... 44 7.1 1
(AC218305) Bos taurus clone CH240-288C7, WORKING DRAFT SEQUE... 44 7.1 1
(AZ903922) RPCI-24-216O22.TJ RPCI-24 Mus musculus genomic cl... 44 7.1 1
(AM607102) Entamoeba invadens IP1 GSS, clone inv074f05.q1k. 44 7.1 1
(CT555735) A BAC library has been constructed from cultivar ... 44 7.1 1
(AG554813) Mus musculus molossinus DNA, clone:MSMg01-472D16.... 44 7.1 1
(CE841386) tigr-gss-dog-17000332660447 Dog Library Canis lup... 44 7.1 1
(B27642) T12C7TRB TAMU Arabidopsis thaliana genomic clone T1... 44 7.1 1
(BZ836863) CH240_288C7.TV CHORI-240 Bos taurus genomic clone... 44 7.1 1
(BA000019) Nostoc sp. PCC 7120 DNA, complete genome. 44 7.1 1
(CU655934) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.4 3
(AF338425) Acropora tenuis mitochondrion, complete genome. 40 7.5 3
(AX344569) Sequence 20 from Patent WO0200932. 34 7.8 8
(AC177069) Strongylocentrotus purpuratus clone R3-4004J14, W... 40 8.8 4
(AB017066) Arabidopsis thaliana genomic DNA, chromosome 5, P... 36 8.9 4
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 9.6 7
(CK524097) rswea0_010512.y1 swe Bombyx mori cDNA, mRNA seque... 32 9.8 3

>(AU267717) Dictyostelium discoideum vegetative cDNA clone:VSH619,
3' end single read.
Length = 608

Score = 710 bits (358), Expect(7) = 0.0
Identities = 358/358 (100%)
Strand = Plus / Plus


Query: 299 gtaattacaattggattctttattacattctgtgcacatgtaatgctatcaagttcaaag 358
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 gtaattacaattggattctttattacattctgtgcacatgtaatgctatcaagttcaaag 290


Query: 359 ttttcacaatatctttttatttttggtgcaatagttagtagtattgttccatgtgtttcg 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 ttttcacaatatctttttatttttggtgcaatagttagtagtattgttccatgtgtttcg 350


Query: 419 aatttattatgctctgtaatatctaaatctacacctcaagaagttcaaggatcagtatta 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aatttattatgctctgtaatatctaaatctacacctcaagaagttcaaggatcagtatta 410


Query: 479 acaggtcttcaatctgtaaaagcacttggtagctttgctggtgccatggtagctaataat 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 acaggtcttcaatctgtaaaagcacttggtagctttgctggtgccatggtagctaataat 470


Query: 539 ttactaagtcatttctcaagtgatgaatcatcgatttactttcctcaagctatctatttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 ttactaagtcatttctcaagtgatgaatcatcgatttactttcctcaagctatctatttt 530


Query: 599 ttaaatggtgttgtattatttataataatgatcatttctattttagtttggagatttt 656
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 ttaaatggtgttgtattatttataataatgatcatttctattttagtttggagatttt 588

Score = 105 bits (53), Expect(7) = 0.0
Identities = 53/53 (100%)
Strand = Plus / Plus


Query: 193 aatcaaaaaacaattggtctttttactcttggtgttggtggtgcaacaatttt 245
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 126 aatcaaaaaacaattggtctttttactcttggtgttggtggtgcaacaatttt 178

Score = 95.6 bits (48), Expect(7) = 0.0
Identities = 48/48 (100%)
Strand = Plus / Plus


Query: 243 ttttatatagtgttttaattgttccattatttttaaaagttttatctg 290
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 ttttatatagtgttttaattgttccattatttttaaaagttttatctg 222

Score = 69.9 bits (35), Expect(7) = 0.0
Identities = 35/35 (100%)
Strand = Plus / Plus


Query: 159 ttttactattactcatatctaatgtataactggaa 193
|||||||||||||||||||||||||||||||||||
Sbjct: 93 ttttactattactcatatctaatgtataactggaa 127

Score = 65.9 bits (33), Expect(7) = 0.0
Identities = 33/33 (100%)
Strand = Plus / Plus


Query: 129 aatatactggtcaagatatctggtcaacctttt 161
|||||||||||||||||||||||||||||||||
Sbjct: 64 aatatactggtcaagatatctggtcaacctttt 96

Score = 58.0 bits (29), Expect(7) = 0.0
Identities = 29/29 (100%)
Strand = Plus / Plus


Query: 64 ttaaaagtttattcacaaataatggtttt 92
|||||||||||||||||||||||||||||
Sbjct: 1 ttaaaagtttattcacaaataatggtttt 29

Score = 50.1 bits (25), Expect(7) = 0.0
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 90 ttttatttcttggacaattttatta 114
|||||||||||||||||||||||||
Sbjct: 26 ttttatttcttggacaattttatta 50

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 845,772,273
Number of extensions: 58153577
Number of successful extensions: 4639831
Number of sequences better than 10.0: 62
Length of query: 712
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 688
Effective length of database: 97,308,875,965
Effective search space: 66948506663920
Effective search space used: 66948506663920
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.12
Homology vs Protein
Query= Contig-U14734-1 (Contig-U14734-1Q) /CSM_Contig/Contig-U14734-1Q.Seq.d
(712 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117075_37(AC117075|pid:none) Dictyostelium discoideum chromoso... 274 2e-72
AC114263_27(AC114263|pid:none) Dictyostelium discoideum chromoso... 120 4e-26
BX842647_256(BX842647|pid:none) Bdellovibrio bacteriovorus compl... 50 9e-05
AM398681_2083(AM398681|pid:none) Flavobacterium psychrophilum JI... 47 8e-04
BX294134_201(BX294134|pid:none) Rhodopirellula baltica SH 1 comp... 43 0.008
EF146993_1(EF146993|pid:none) Populus trichocarpa clone WS01225_... 43 0.011
CP000927_4007(CP000927|pid:none) Caulobacter sp. K31, complete g... 43 0.011
CU928180_7(CU928180|pid:none) Kluyveromyces thermotolerans strai... 43 0.011
CP000348_783(CP000348|pid:none) Leptospira borgpetersenii serova... 43 0.011
CU928171_817(CU928171|pid:none) Kluyveromyces thermotolerans str... 42 0.014
(P40760) RecName: Full=Uncharacterized MFS-type transporter yuxJ... 41 0.032
U11882_1(U11882|pid:none) Bacillus subtilis orf1, partial cds, p... 41 0.032
AE016823_2293(AE016823|pid:none) Leptospira interrogans serovar ... 41 0.032
CP000111_1941(CP000111|pid:none) Prochlorococcus marinus str. MI... 41 0.032
CP000749_4200(CP000749|pid:none) Marinomonas sp. MWYL1, complete... 41 0.042
AE017333_3171(AE017333|pid:none) Bacillus licheniformis DSM 13, ... 41 0.042
AK228256_1(AK228256|pid:none) Arabidopsis thaliana mRNA for puta... 40 0.054
CP000878_1830(CP000878|pid:none) Prochlorococcus marinus str. MI... 40 0.054
BT010148_1(BT010148|pid:none) Arabidopsis thaliana At2g16980 gen... 40 0.054
AJ000346_2(AJ000346|pid:none) Enterococcus hirae napB and napC g... 40 0.054
AJ429231_4(AJ429231|pid:none) Enterococcus hirae ftsW gene, psr ... 40 0.054
CP000825_1963(CP000825|pid:none) Prochlorococcus marinus str. MI... 40 0.054
DQ366743_20(DQ366743|pid:none) Uncultured Prochlorococcus marinu... 40 0.054
DQ366736_8(DQ366736|pid:none) Uncultured Prochlorococcus marinus... 40 0.071
CP000576_1887(CP000576|pid:none) Prochlorococcus marinus str. MI... 40 0.093
CP001150_567(CP001150|pid:none) Rhodobacter sphaeroides KD131 ch... 40 0.093
CP001175_2758(CP001175|pid:none) Listeria monocytogenes HCC23, c... 39 0.12
AD1417(AD1417) drug-efflux transporters homolog lmo2741 [importe... 39 0.16
AM263198_2689(AM263198|pid:none) Listeria welshimeri serovar 6b ... 39 0.16
CP000095_2138(CP000095|pid:none) Prochlorococcus marinus str. NA... 39 0.16
AF1792(AF1792) drug-efflux transporters homolog lin2884 [importe... 39 0.16
CR954246_2108(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 39 0.21
CP000238_242(CP000238|pid:none) Baumannia cicadellinicola str. H... 39 0.21
BX548174_1938(BX548174|pid:none) Prochlorococcus marinus MED4 co... 39 0.21
CP000411_270(CP000411|pid:none) Oenococcus oeni PSU-1, complete ... 39 0.21
CP000077_1977(CP000077|pid:none) Sulfolobus acidocaldarius DSM 6... 38 0.27
CP000553_2169(CP000553|pid:none) Prochlorococcus marinus str. NA... 38 0.27
AE001437_751(AE001437|pid:none) Clostridium acetobutylicum ATCC ... 38 0.35
CP000383_264(CP000383|pid:none) Cytophaga hutchinsonii ATCC 3340... 38 0.35
CP000806_3838(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 38 0.35
AL035602_21(AL035602|pid:none) Arabidopsis thaliana DNA chromoso... 37 0.46
AF325107_1(AF325107|pid:none) Arabidopsis thaliana putative prot... 37 0.46
CP000813_2771(CP000813|pid:none) Bacillus pumilus SAFR-032, comp... 37 0.46
CP000412_122(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 37 0.60
AE017343_6(AE017343|pid:none) Cryptococcus neoformans var. neofo... 37 0.60
AE005176_126(AE005176|pid:none) Lactococcus lactis subsp. lactis... 37 0.78
BX569695_303(BX569695|pid:none) Synechococcus sp. WH8102 complet... 36 1.0
AM114193_702(AM114193|pid:none) Uncultured methanogenic archaeon... 36 1.0
AY129071_1(AY129071|pid:none) Gallus gallus Rh blood group prote... 36 1.3
CP000099_617(CP000099|pid:none) Methanosarcina barkeri str. Fusa... 36 1.3
AM406671_138(AM406671|pid:none) Lactococcus lactis subsp. cremor... 36 1.3
CP000425_111(CP000425|pid:none) Lactococcus lactis subsp. cremor... 36 1.3
CP001176_2201(CP001176|pid:none) Bacillus cereus B4264, complete... 36 1.3
CP000964_190(CP000964|pid:none) Klebsiella pneumoniae 342, compl... 35 1.7
CP000450_2376(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 35 2.3
AM114193_197(AM114193|pid:none) Uncultured methanogenic archaeon... 35 2.3
(O97239) RecName: Full=Protein dopey homolog PFC0245c; &AL03455... 35 3.0
CP000411_1490(CP000411|pid:none) Oenococcus oeni PSU-1, complete... 35 3.0
CP000393_225(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 35 3.0
AP008230_1334(AP008230|pid:none) Desulfitobacterium hafniense Y5... 35 3.0
CP000487_560(CP000487|pid:none) Campylobacter fetus subsp. fetus... 35 3.0
AB126616_10(AB126616|pid:none) Geobacillus stearothermophilus ge... 35 3.0
CP000001_2105(CP000001|pid:none) Bacillus cereus E33L, complete ... 34 3.9
AP009384_1898(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 34 3.9
AL954747_2456(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 34 3.9
CP001176_2287(CP001176|pid:none) Bacillus cereus B4264, complete... 34 3.9
AM260525_1459(AM260525|pid:none) Bartonella tribocorum CIP 10547... 34 3.9
CP000554_2967(CP000554|pid:none) Prochlorococcus marinus str. MI... 34 3.9
CP000485_1997(CP000485|pid:none) Bacillus thuringiensis str. Al ... 34 5.1
AE016879_2184(AE016879|pid:none) Bacillus anthracis str. Ames, c... 34 5.1
CP001175_215(CP001175|pid:none) Listeria monocytogenes HCC23, co... 33 6.6
AP006627_2160(AP006627|pid:none) Bacillus clausii KSM-K16 DNA, c... 33 6.6
AP006725_4769(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 33 6.6
(A5D7V7) RecName: Full=Solute carrier family 46 member 3; Flags:... 33 6.6
AI1371(AI1371) multi-drug resistance efflux pump homolog lmo2377... 33 6.6
CP000407_1385(CP000407|pid:none) Streptococcus suis 05ZYH33, com... 33 6.6
AE017194_2485(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 33 6.6
CP000647_3876(CP000647|pid:none) Klebsiella pneumoniae subsp. pn... 33 6.6
AL111168_1191(AL111168|pid:none) Campylobacter jejuni subsp. jej... 33 6.6
AP008955_1535(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 33 6.6
AG1741(AG1741) multi-drug resistance efflux pump homolog lin2476... 33 6.6
CP001638_1649(CP001638|pid:none) Geobacillus sp. WCH70, complete... 33 8.7
CP000768_380(CP000768|pid:none) Campylobacter jejuni subsp. doyl... 33 8.7
CP000083_953(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 33 8.7

>AC117075_37(AC117075|pid:none) Dictyostelium discoideum chromosome
2 map 5201047-5455781 strain AX4, complete sequence.
Length = 471

Score = 274 bits (701), Expect = 2e-72
Identities = 150/179 (83%), Positives = 153/179 (85%), Gaps = 2/179 (1%)
Frame = +2

Query: 128 KYTGQDIWSTFLLL--LISNV*LEIKKXXXXXXXXXXXXXXXYSVLIVPLFLKVLSEKKV 301
+YTGQDIWSTF L+ N +K YSVLIVPLFLKVLSEKKV
Sbjct: 283 QYTGQDIWSTFYYYSYLMYNW---NQKTIGLFTLGVGGATILYSVLIVPLFLKVLSEKKV 339

Query: 302 ITIGFFITFCAHVMLSSSKFSQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLT 481
ITIGFFITFCAHVMLSSSKFSQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLT
Sbjct: 340 ITIGFFITFCAHVMLSSSKFSQYLFIFGAIVSSIVPCVSNLLCSVISKSTPQEVQGSVLT 399

Query: 482 GLQSVKALGSFAGAMVANNLLSHFSSDESSIYFPQAIYFLNGVVLFIIMIISILVWRFY 658
GLQSVKALGSFAGAMVANNLLSHFSSDESSIYFPQAIYFLNGVVLFIIMIISILVWRFY
Sbjct: 400 GLQSVKALGSFAGAMVANNLLSHFSSDESSIYFPQAIYFLNGVVLFIIMIISILVWRFY 458

Score = 90.5 bits (223), Expect = 5e-17
Identities = 44/66 (66%), Positives = 48/66 (72%)
Frame = +3

Query: 3 NNKNKTFVKKSFENPNPFSTIKSLFTNNGFYFLDNFIIFFNSNILVKISGQPFYYYSYLM 182
NNKNKTFVKKSFENPNPFSTIKSLFTNNGF ++FF+ + FYYYSYLM
Sbjct: 242 NNKNKTFVKKSFENPNPFSTIKSLFTNNGFISW-TILLFFSIQYTGQDIWSTFYYYSYLM 300

Query: 183 YNWKSK 200
YNW K
Sbjct: 301 YNWNQK 306

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 941,477,825
Number of extensions: 16483511
Number of successful extensions: 49775
Number of sequences better than 10.0: 84
Number of HSP's gapped: 49721
Number of HSP's successfully gapped: 85
Length of query: 237
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 112
Effective length of database: 646,610,989
Effective search space: 72420430768
Effective search space used: 72420430768
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.99 gvh: 0.69 alm: 0.15 top: 0.53 tms: 0.27 mit: 0.22 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 1.00 m3b: 0.00 m_ : 0.00

32.0 %: endoplasmic reticulum
24.0 %: mitochondrial
24.0 %: plasma membrane
8.0 %: extracellular, including cell wall
4.0 %: Golgi
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U14734-1 is end

VS (DIR, S) 3
VH (FL, L) 1
VF (FL, S) 7
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0