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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14726-1
Contig ID Contig-U14726-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Contig-U14726-1Q.Seq.d
ATTAAAATATCTTTATATATATTAAAAAAAAAAAAAAAAAAAAAAAAAAA
ATGGAATATAAAATTAAATTATTTTTATCATTTTTAATTATAAGATCAAT
CTTTGGGGAAGAAGTTAGACAATTATCATTTTTAAATGGAAATTGTGATG
GTACCATATGCTACGTATGCCAATACATTATGCTATCCAGACACATTTGC
AATTGTAAATGAAAGTACAATTAAATTAAGAAATTCAAATGGTTTACAAG
ATTGTAAAGTTGATACCACTAATTACAATGAACAACAACAAAGTGGTGAT
ATTCATAATTTATATCAATGTACTGTTTTATCAGATTCTTATGAAAATAG
TATCAGTGAAAATTATGATACAATTATAGATAAAAAAACAATTATTAATA
ATGATGATGATTCATCATCAACATCATCATCATATGAAATTCCATCATTT
TCATATTTATTCACCTATACTAAATCAAGATTACCATTAATGGTAAATGG
ATATTGTAATCAAATTAAATTATATAATTGTAATTGTGAAAATTATCAAA
TTTATTCATTTAAAAATGATAGTTGTTTCTCAAATACTGATTCATTTAGT
TCATATTCATATTATAAACAAATGTGTAGAGGTGATTCAATTTTAACTTT
TAAATGTGAAGAATGTTCTTCAAATTCTTTAGAAACTTGTATACTTGATA
ATACTGAACCTTCAAATTTATCAGAATGTCCAAATATTAAATATACAACA
ATTGAAAAACTTTTAAAAGAAATTAAAAATAACAATAAATAAATAAATAA
ATAAAATAAAAAGAGATAATTTCATTTTTAAAAATTATTATTTTAAAAAA
AAAAA
Gap no gap
Contig length 855
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U14726
List of clone(s) 

est1=SSI696F,1,628
Translated Amino Acid sequence 
ikislyilkkkkkkkkkwniklnyfyhf*l*dqslgkkldnyhf*MEIVMVPYATYANTL
CYPDTFAIVNESTIKLRNSNGLQDCKVDTTNYNEQQQSGDIHNLYQCTVLSDSYENSISE
NYDTIIDKKTIINNDDDSSSTSSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCNCE
NYQIYSFKNDSCFSNTDSFSSYSYYKQMCRGDSILTFKCEECSSNSLETCILDNTEPSNL
SECPNIKYTTIEKLLKEIKNNNK*ink*nkkr*fhf*kllf*kkk
Translated Amino Acid sequence (All Frames) 
Frame A:
ikislyilkkkkkkkkkwniklnyfyhf*l*dqslgkkldnyhf*MEIVMVPYATYANTL
CYPDTFAIVNESTIKLRNSNGLQDCKVDTTNYNEQQQSGDIHNLYQCTVLSDSYENSISE
NYDTIIDKKTIINNDDDSSSTSSSYEIPSFSYLFTYTKSRLPLMVNGYCNQIKLYNCNCE
NYQIYSFKNDSCFSNTDSFSSYSYYKQMCRGDSILTFKCEECSSNSLETCILDNTEPSNL
SECPNIKYTTIEKLLKEIKNNNK*ink*nkkr*fhf*kllf*kkk


Frame B:
lkylyiy*kkkkkkkkngi*n*iifiifnykinlwgrs*tiiifkwkl*wyhmlrmpihy
aiqthlql*mkvqln*eiqmvykivkliplitmnnnkvvifiiyinvlfyqilmkivsvk
imiql*ikkqllimmmihhqhhhhmkfhhfhiyspilnqdyh*w*mdiviklnyiivivk
iikfihlkmivvsqilihlvhihiinkcveviqf*llnvknvlqil*klvyliilnlqiy
qnvqilniqqlknf*kklkitink*inkikrdnfifknyyfkkk


Frame C:
*nifiyikkkkkkkkkmeykiklflsfliirsifgeevrqlsflngncdgticyvcqyim
lsrhicnck*kyn*ikkfkwftrl*s*yh*lq*tttkw*ys*fismycfirfl*k*yq*k
l*ynyr*knny*****fiiniiii*nsiififihly*ikitingkwil*sn*ii*l*l*k
lsnlfi*k**lflky*fi*fifil*tnv*r*fnfnf*m*rmffkffrnlyt**y*tfkfi
rmsky*iynn*ktfkrn*k*q*ink*ik*keiisflkiiilkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14726-1 (Contig-U14726-1Q)
/CSM_Contig/Contig-U14726-1Q.Seq.d
         (855 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Conti...   672  0.0
Contig-U04773-1 (Contig-U04773-1Q) /CSM_Contig/Conti...   672  0.0
Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U11247-1 (Contig-U11247-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U10414-1 (Contig-U10414-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U06790-1 (Contig-U06790-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U04878-1 (Contig-U04878-1Q) /CSM_Contig/Conti...    38  0.015
Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U14738-1 (Contig-U14738-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U09321-1 (Contig-U09321-1Q) /CSM_Contig/Conti...    34  0.24

>Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Contig-U14726-1Q.Seq.d
          Length = 855

 Score =  672 bits (339), Expect = 0.0
 Identities = 353/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 52  tggaatataaaattaaattatttttatcatttttaattataagatcaatctttggggaag 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tggaatataaaattaaattatttttatcatttttaattataagatcaatctttggggaag 111

                                                                       
Query: 112 aagttagacaattatcatttttaaatggaaattgtgatggtaccatatgctacgtatgcc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aagttagacaattatcatttttaaatggaaattgtgatggtaccatatgctacgtatgcc 171

                                                                       
Query: 172 aatacattatgctatccagacacatttgcaattgtaaatgaaagtacaattaaattaaga 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aatacattatgctatccagacacatttgcaattgtaaatgaaagtacaattaaattaaga 231

                                                                       
Query: 232 aattcaaatggtttacaagattgtaaagttgataccactaattacaatgaacaacaacaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aattcaaatggtttacaagattgtaaagttgataccactaattacaatgaacaacaacaa 291

                                                                       
Query: 292 agtggtgatattcataatttatatcaatgtactgttttatcagattcttatgaaaatagt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtggtgatattcataatttatatcaatgtactgttttatcagattcttatgaaaatagt 351

                                                                       
Query: 352 atcagtgaaaattatgatacaattatagatnnnnnnncaattattaataatgatgatgat 411
           ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 352 atcagtgaaaattatgatacaattatagataaaaaaacaattattaataatgatgatgat 411


 Score =  636 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                       
Query: 434 atgaaattccatcattttcatatttattcacctatactaaatcaagattaccattaatgg 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgaaattccatcattttcatatttattcacctatactaaatcaagattaccattaatgg 493

                                                                       
Query: 494 taaatggatattgtaatcaaattaaattatataattgtaattgtgaaaattatcaaattt 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taaatggatattgtaatcaaattaaattatataattgtaattgtgaaaattatcaaattt 553

                                                                       
Query: 554 attcatttaaaaatgatagttgtttctcaaatactgattcatttagttcatattcatatt 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attcatttaaaaatgatagttgtttctcaaatactgattcatttagttcatattcatatt 613

                                                                       
Query: 614 ataaacaaatgtgtagaggtgattcaattttaacttttaaatgtgaagaatgttcttcaa 673
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ataaacaaatgtgtagaggtgattcaattttaacttttaaatgtgaagaatgttcttcaa 673

                                                                       
Query: 674 attctttagaaacttgtatacttgataatactgaaccttcaaatttatcagaatgtccaa 733
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attctttagaaacttgtatacttgataatactgaaccttcaaatttatcagaatgtccaa 733

                                
Query: 734 atattaaatatacaacaattg 754
           |||||||||||||||||||||
Sbjct: 734 atattaaatatacaacaattg 754


 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  attaaaatatctttatatatatt 23
          |||||||||||||||||||||||
Sbjct: 1  attaaaatatctttatatatatt 23


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 557 catttaaaaatgatagttgt 576
           ||||||||||||||| ||||
Sbjct: 138 catttaaaaatgataattgt 119


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 481 ttaccattaatggtaa 496
           ||||||||||||||||
Sbjct: 496 ttaccattaatggtaa 481


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 119 acaattatcatttttaaatg 138
           |||| |||||||||||||||
Sbjct: 576 acaactatcatttttaaatg 557


>Contig-U04773-1 (Contig-U04773-1Q) /CSM_Contig/Contig-U04773-1Q.Seq.d
          Length = 855

 Score =  672 bits (339), Expect = 0.0
 Identities = 353/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 52  tggaatataaaattaaattatttttatcatttttaattataagatcaatctttggggaag 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tggaatataaaattaaattatttttatcatttttaattataagatcaatctttggggaag 111

                                                                       
Query: 112 aagttagacaattatcatttttaaatggaaattgtgatggtaccatatgctacgtatgcc 171
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 112 aagttagacaattatcatttttaaatggaaattgtgatggtaccatatgctacgtatgcc 171

                                                                       
Query: 172 aatacattatgctatccagacacatttgcaattgtaaatgaaagtacaattaaattaaga 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 aatacattatgctatccagacacatttgcaattgtaaatgaaagtacaattaaattaaga 231

                                                                       
Query: 232 aattcaaatggtttacaagattgtaaagttgataccactaattacaatgaacaacaacaa 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 aattcaaatggtttacaagattgtaaagttgataccactaattacaatgaacaacaacaa 291

                                                                       
Query: 292 agtggtgatattcataatttatatcaatgtactgttttatcagattcttatgaaaatagt 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 agtggtgatattcataatttatatcaatgtactgttttatcagattcttatgaaaatagt 351

                                                                       
Query: 352 atcagtgaaaattatgatacaattatagatnnnnnnncaattattaataatgatgatgat 411
           ||||||||||||||||||||||||||||||       |||||||||||||||||||||||
Sbjct: 352 atcagtgaaaattatgatacaattatagataaaaaaacaattattaataatgatgatgat 411


 Score =  636 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Plus

                                                                       
Query: 434 atgaaattccatcattttcatatttattcacctatactaaatcaagattaccattaatgg 493
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 atgaaattccatcattttcatatttattcacctatactaaatcaagattaccattaatgg 493

                                                                       
Query: 494 taaatggatattgtaatcaaattaaattatataattgtaattgtgaaaattatcaaattt 553
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 taaatggatattgtaatcaaattaaattatataattgtaattgtgaaaattatcaaattt 553

                                                                       
Query: 554 attcatttaaaaatgatagttgtttctcaaatactgattcatttagttcatattcatatt 613
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 attcatttaaaaatgatagttgtttctcaaatactgattcatttagttcatattcatatt 613

                                                                       
Query: 614 ataaacaaatgtgtagaggtgattcaattttaacttttaaatgtgaagaatgttcttcaa 673
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 ataaacaaatgtgtagaggtgattcaattttaacttttaaatgtgaagaatgttcttcaa 673

                                                                       
Query: 674 attctttagaaacttgtatacttgataatactgaaccttcaaatttatcagaatgtccaa 733
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attctttagaaacttgtatacttgataatactgaaccttcaaatttatcagaatgtccaa 733

                                
Query: 734 atattaaatatacaacaattg 754
           |||||||||||||||||||||
Sbjct: 734 atattaaatatacaacaattg 754


 Score = 46.1 bits (23), Expect = 6e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  attaaaatatctttatatatatt 23
          |||||||||||||||||||||||
Sbjct: 1  attaaaatatctttatatatatt 23


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 557 catttaaaaatgatagttgt 576
           ||||||||||||||| ||||
Sbjct: 138 catttaaaaatgataattgt 119


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 481 ttaccattaatggtaa 496
           ||||||||||||||||
Sbjct: 496 ttaccattaatggtaa 481


 Score = 32.2 bits (16), Expect = 0.94
 Identities = 19/20 (95%)
 Strand = Plus / Minus

                               
Query: 119 acaattatcatttttaaatg 138
           |||| |||||||||||||||
Sbjct: 576 acaactatcatttttaaatg 557


>Contig-U11929-1 (Contig-U11929-1Q) /CSM_Contig/Contig-U11929-1Q.Seq.d
          Length = 1567

 Score = 38.2 bits (19), Expect = 0.015
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                     
Query: 64 ttaaattatttttatcatttttaatta 90
          ||||||||||||| |||| ||||||||
Sbjct: 19 ttaaattatttttgtcatctttaatta 45


 Score = 30.2 bits (15), Expect = 3.7
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 77  atcatttttaattat 91
           |||||||||||||||
Sbjct: 561 atcatttttaattat 547


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 26,241
Number of Sequences: 6905
Number of extensions: 26241
Number of successful extensions: 2761
Number of sequences better than 10.0: 389
length of query: 855
length of database: 5,674,871
effective HSP length: 16
effective length of query: 839
effective length of database: 5,564,391
effective search space: 4668524049
effective search space used: 4668524049
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.30
Homology vs DNA 
Query= Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Contig-U14726-1Q.Seq.d
         (855 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(C89801) Dictyostelium discoideum slug cDNA, clone SSG870.        452   0.0    4
(AU037662) Dictyostelium discoideum slug cDNA, clone SSE148.      323   e-175  5
(C90735) Dictyostelium discoideum slug cDNA, clone SSJ887.        323   e-137  4
(AU073388) Dictyostelium discoideum slug cDNA, clone SSG870.      202   e-100  3
(C84100) Dictyostelium discoideum slug cDNA, clone SSC776.        323   2e-99  2
(AL844509) Plasmodium falciparum chromosome 13.                    40   1e-04  11
(EJ980649) 1093022151911 Global-Ocean-Sampling_GS-30-02-01-1...    54   0.002  2
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    40   0.007  9
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   0.020  10
(AM633980) Entamoeba dispar GSS, clone dispar110a11.p1k.           38   0.029  2
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   0.039  8
(AC202517) Medicago truncatula clone mth2-67f22, complete se...    36   0.086  2
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.10   14
(AC126128) Rattus norvegicus clone CH230-16C6, WORKING DRAFT...    50   0.14   1
(AC098623) Rattus norvegicus clone CH230-99J12, *** SEQUENCI...    50   0.14   1
(AC019344) Homo sapiens clone RP11-22O14, WORKING DRAFT SEQU...    44   0.16   4
(CU928294) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.19   4
(EL498673) PFLAB1-M_F3_-P4A_F11_11.AB1 Blood stage Plasmodiu...    36   0.22   2
(AL844507) Plasmodium falciparum chromosome 8.                     36   0.32   13
(DN304435) PL05005B2D04 cDNA from sexually mature hermaphodi...    46   0.38   2
(EJ071407) 1095458086745 Global-Ocean-Sampling_GS-26-01-01-1...    38   0.41   2
(AL772133) Zebrafish DNA sequence from clone CH211-121J5 in ...    48   0.55   1
(BX936326) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    48   0.55   1
(CZ545133) SRAA-aad60b02.g1 Strongyloides ratti whole genome...    48   0.55   1
(BZ435531) BONQK33TR BO_1.6_2_KB_tot Brassica oleracea genom...    48   0.55   1
(ES628926) NGPS490TR NGPP Nasonia giraulti cDNA, mRNA sequence.    48   0.55   1
(ES626055) NGPQP77TR NGPP Nasonia giraulti cDNA, mRNA sequence.    48   0.55   1
(DW612958) CLJ272-A11.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    48   0.55   1
(DW610524) CLJ257-E07.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    48   0.55   1
(DW609446) CLJ251-A05.x1d-t SHGC-CLJ2 Gasterosteus aculeatus...    48   0.55   1
(DW593888) CGX109-G04.x1d-t SHGC-CGX2 Gasterosteus aculeatus...    48   0.55   1
(DW031169) CFW209-G11.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    48   0.55   1
(DW027269) CFW238-F03.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    48   0.55   1
(DT967439) CLJ110-F11.x1d-t SHGC-CLJ Gasterosteus aculeatus ...    48   0.55   1
(DT963888) CFW189-G05.x1d-t SHGC-CFW Gasterosteus aculeatus ...    48   0.55   1
(DN732151) CNB62-F11.x1d-t SHGC-CNB Gasterosteus aculeatus c...    48   0.55   1
(DN730028) CNB50-F01.x1d-t SHGC-CNB Gasterosteus aculeatus c...    48   0.55   1
(DN718689) CNB124-G10.x1d-t SHGC-CNB Gasterosteus aculeatus ...    48   0.55   1
(DN708887) CLJ80-A08.x1d-t SHGC-CLJ Gasterosteus aculeatus c...    48   0.55   1
(CX576102) TTE00033691 Amplicon Express - Conjugative Form T...    48   0.55   1
(FC817080) Sr_pAMT7_07o11_T7 S. ratti mixed stage pAMP Stron...    48   0.55   1
(EV421310) 210795587 NGP Nasonia giraulti cDNA clone 156K1 5...    48   0.55   1
(BH537727) BOGBJ47TF BOGB Brassica oleracea genomic clone BO...    38   0.65   3
(CP000361) Arcobacter butzleri RM4018, complete genome.            38   0.82   18
(AM459765) Vitis vinifera contig VV78X052355.10, whole genom...    38   0.86   3
(AC117081) Dictyostelium discoideum chromosome 2 map 5862124...    34   0.89   9
(AC100957) Mus musculus clone RP23-74C10, LOW-PASS SEQUENCE ...    42   1.1    2
(AC178667) Strongylocentrotus purpuratus clone R3-12A8, WORK...    34   1.1    8
(AC198146) Nomascus leucogenys BAC clone CH271-385O23 from c...    36   1.1    2
(EC822501) SME00002172 esmbsro2 Sawyeria marylandensis cDNA,...    38   1.2    2
(CU807906) A BAC library has been constructed from PN40024 g...    40   1.3    2
(AM458260) Vitis vinifera contig VV78X224225.7, whole genome...    34   1.3    2
(AM480077) Vitis vinifera contig VV78X005448.11, whole genom...    34   1.5    5
(DB827226) Nilaparvata lugens mRNA, EST clone:NLHT9126, 5' e...    36   1.5    2
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    36   1.6    7
(EK092469) 1092962013229 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.6    2
(AC079531) Mus musculus clone RP23-345C6, WORKING DRAFT SEQU...    40   1.7    3
(EK070780) 1092960190316 Global-Ocean-Sampling_GS-31-01-01-1...    44   1.7    2
(CU856625) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   2.0    5
(AC162031) Medicago truncatula chromosome 8 clone mth2-194a2...    40   2.0    5
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    34   2.0    10
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    32   2.0    10
(BX005480) Mouse DNA sequence from clone RP23-142M12 on chro...    46   2.2    1
(AC144630) Mus musculus BAC clone RP23-284O15 from chromosom...    46   2.2    1
(AC132620) Mus musculus BAC clone RP23-179A12 from chromosom...    46   2.2    1
(AC101715) Mus musculus chromosome 1, clone RP23-283P17, com...    46   2.2    1
(AC091784) Genomic sequence for Mus musculus, clone RP23-213...    46   2.2    1
(AM455444) Vitis vinifera contig VV78X001474.1, whole genome...    46   2.2    1
(AM452659) Vitis vinifera contig VV78X222612.8, whole genome...    46   2.2    1
(AM439013) Vitis vinifera contig VV78X178010.42, whole genom...    46   2.2    1
(AM426826) Vitis vinifera contig VV78X070555.12, whole genom...    46   2.2    1
(AC156881) Bos taurus clone CH240-54P19, WORKING DRAFT SEQUE...    46   2.2    1
(AC122121) Mus musculus chromosome 6 clone RP24-348N22 map 6...    46   2.2    1
(AC118156) Rattus norvegicus clone CH230-195B11, WORKING DRA...    46   2.2    1
(CU570759) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(CU463275) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   2.2    1
(AC172760) Bos taurus clone CH240-273I19, WORKING DRAFT SEQU...    46   2.2    1
(AC022776) Mus musculus chromosome X clone RP23-94A8 map X, ...    46   2.2    1
(AZ828515) 2M0105I04R Mouse 10kb plasmid UUGC1M library Mus ...    46   2.2    1
(FH417798) CHO_OF4883xk11r1.ab1 CHO_OF4 Nicotiana tabacum ge...    46   2.2    1
(ET739189) CHO_OF237xb20r1.ab1 CHO_OF Nicotiana tabacum geno...    46   2.2    1
(EK419100) 1095515488755 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(EK166739) 1095458054765 Global-Ocean-Sampling_GS-31-01-01-1...    46   2.2    1
(EJ260359) 1095349033950 Global-Ocean-Sampling_GS-27-01-01-1...    46   2.2    1
(EI385065) POTCV70TR Solanum tuberosum RHPOTKEY BAC ends Sol...    46   2.2    1
(BH933456) odf12b12.g1 B.oleracea002 Brassica oleracea genom...    46   2.2    1
(ES639724) NVPE244TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   2.2    1
(ES635400) NVPB959TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   2.2    1
(ES633798) NVPAF52TR NVPA Nasonia vitripennis cDNA, mRNA seq...    46   2.2    1
(DT526953) GH_OCF02H04.f GH_OCF Gossypium hirsutum cDNA clon...    46   2.2    1
(DT526070) WS02047.C21_A17 PTxN-IB-N-A-11 Populus trichocarp...    46   2.2    1
(CO122378) GR__Eb03P11.r GR__Eb Gossypium raimondii cDNA clo...    46   2.2    1
(FC811533) Sr_pASP6_07o11_SP6 S. ratti mixed stage pAMP Stro...    46   2.2    1
(EV426232) 210759904 NVP Nasonia vitripennis cDNA clone 200C...    46   2.2    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    46   2.2    1
(L11172) Plasmodium falciparum RNA polymerase I gene, comple...    36   2.3    4
(AC022511) Homo sapiens 12 BAC RP11-71J4 (Roswell Park Cance...    36   2.5    5
(EC819039) SME00008471 esmbsro2 Sawyeria marylandensis cDNA,...    40   2.6    2
(EV837305) TT1DV54TV Tetrahymena thermophila SB210 cDNA libr...    40   2.6    2
(CT971494) Zebrafish DNA sequence from clone CH211-200K23 in...    42   3.0    2

>(C89801) Dictyostelium discoideum slug cDNA, clone SSG870.
          Length = 680

 Score =  452 bits (228), Expect(4) = 0.0
 Identities = 228/228 (100%)
 Strand = Plus / Plus


Query: 154 ccatatgctacgtatgccaatacattatgctatccagacacatttgcaattgtaaatgaa 213
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ccatatgctacgtatgccaatacattatgctatccagacacatttgcaattgtaaatgaa 60


Query: 214 agtacaattaaattaagaaattcaaatggtttacaagattgtaaagttgataccactaat 273
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  agtacaattaaattaagaaattcaaatggtttacaagattgtaaagttgataccactaat 120


Query: 274 tacaatgaacaacaacaaagtggtgatattcataatttatatcaatgtactgttttatca 333
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tacaatgaacaacaacaaagtggtgatattcataatttatatcaatgtactgttttatca 180


Query: 334 gattcttatgaaaatagtatcagtgaaaattatgatacaattatagat 381
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gattcttatgaaaatagtatcagtgaaaattatgatacaattatagat 228

 Score =  323 bits (163), Expect(4) = 0.0
 Identities = 163/163 (100%)
 Strand = Plus / Plus


Query: 568 gatagttgtttctcaaatactgattcatttagttcatattcatattataaacaaatgtgt 627
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 gatagttgtttctcaaatactgattcatttagttcatattcatattataaacaaatgtgt 468


Query: 628 agaggtgattcaattttaacttttaaatgtgaagaatgttcttcaaattctttagaaact 687
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 agaggtgattcaattttaacttttaaatgtgaagaatgttcttcaaattctttagaaact 528


Query: 688 tgtatacttgataatactgaaccttcaaatttatcagaatgtc 730
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 tgtatacttgataatactgaaccttcaaatttatcagaatgtc 571

 Score = 77.8 bits (39), Expect(4) = 0.0
 Identities = 39/39 (100%)
 Strand = Plus / Plus


Query: 464 cctatactaaatcaagattaccattaatggtaaatggat 502
           |||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cctatactaaatcaagattaccattaatggtaaatggat 349

 Score = 42.1 bits (21), Expect(4) = 0.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 389 caattattaataatgatgatg 409
           |||||||||||||||||||||
Sbjct: 236 caattattaataatgatgatg 256

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 830,885,096
Number of extensions: 58250905
Number of successful extensions: 5217836
Number of sequences better than 10.0: 251
Length of query: 855
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 831
Effective length of database: 97,308,875,965
Effective search space: 80863675926915
Effective search space used: 80863675926915
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14726-1 (Contig-U14726-1Q) /CSM_Contig/Contig-U14726-1Q.Seq.d
         (855 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116984_51(AC116984|pid:none) Dictyostelium discoideum chromoso...    46   0.002
AL844506_178(AL844506|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.4
AL844508_52(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.1
DQ015676_10(DQ015676|pid:none) Microtus rossiaemeridionalis mito...    33   9.2
AK141551_1(AK141551|pid:none) Mus musculus adult male hippocampu...    33   9.3
FM992691_421(FM992691|pid:none) Candida dubliniensis CD36 chromo...    33   9.3

>AC116984_51(AC116984|pid:none) Dictyostelium discoideum chromosome
           2 map 2567470-3108875 strain AX4, complete sequence.
          Length = 284

 Score = 45.8 bits (107), Expect = 0.002
 Identities = 25/90 (27%), Positives = 49/90 (54%), Gaps = 3/90 (3%)
 Frame = +1

Query: 493 VNGYCNQ-IKLYNCNCENYQIYSFKNDSCFSNTDSFSSYSYYKQMCRGDSILTFKC-EEC 666
           +NGYC++ ++  + +CEN  + S+ N +C       S+  + + +C G+ +  + C  +C
Sbjct: 110 INGYCSELVQFADDDCENILLNSYLNGACVGPQ---SNGYFNRYLCNGNVVKRYNCPSDC 166

Query: 667 -SSNSLETCILDNTEPSNLSECPNIKYTTI 753
             ++ +  C+ D  E  ++S CPNIK   I
Sbjct: 167 RKASGVSGCVFDK-ELKSISSCPNIKSKNI 195

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 778,519,614
Number of extensions: 12371842
Number of successful extensions: 36446
Number of sequences better than 10.0: 6
Number of HSP's gapped: 36434
Number of HSP's successfully gapped: 6
Length of query: 285
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 158
Effective length of database: 640,137,871
Effective search space: 101141783618
Effective search space used: 101141783618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.36  alm: 0.49  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: nuclear
	 36.0 %: cytoplasmic
	 20.0 %: cytoskeletal
	  4.0 %: mitochondrial

>> prediction for Contig-U14726-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0