Contig-U14720-1
Contig ID Contig-U14720-1
Contig update 2002.12.18
Contig sequence
>Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Contig-U14720-1Q.Seq.d
AAAACGCGTTATCAAGTATCGTTTATCTGTATCCTTCATCATTGATTAAT
CAATCTTTAATAAATTTGAAAAATCAAAGAAACCACGATAGAGCGTATAC
ATAAAAGATGGAGAATGATCAAGATCAACAACAACAACAACAACAAAGCC
AACAACAACAACCACAACAAGAGGAACAAGAACAAGTCGATGTTGATTTA
AGTTCACTCCAAGGTCAAGAAAGAATTGAATATATCAATACATTAATTGC
CGATAGTTATAATATTGCAATTGCAAAAAAACTTGAAGAATTTTTAGATA
TTCAAATCAACGAAAATACATATTTATTCCAAGCAAATTCAACACTCCTT
AAATTATATCAATTTAACCCAAACCCACTTAAACAAAGATTCAATCGCCA
AGATGTTAGCAAAGGCATTAATGAATTTCCCATGCAACGACTTTTTATTC
CTCTCCTATATGATTCCATCGATCATTCAAAAGGAGGAACCATTGTTAAA
ACTCTTTATCCTCAACAACTTTTTAGAGACTTGTAAATTTAAAGAAGCTT
GGACCCATATCAATAGTCATTCATTCTTTTCAGAGATCCCAAGTTTCATC
GACAACATTAGAAACTTTATCTCTGGTGTACTCTCTATCACTTATCAAAA
TATTTCAATCACCATGTTGGGTGAACTTTTAAATTTATCTGATCGTACTC
AACTCGTCGATTATATTCAATCAAAACAACCAACTTGGAAAATCTCTGAT
TCAACTGTTTCTTTACAATCTGATAATTCAAAACAAAAGAAAGCTGATAC
TTTTACTTTTGATCAACTCTCAAGAATCCTTCCAACTTTTATTAAATAAA
TATTTTAGAATTTAAACAGTAATAATAAAAAAATAATTAAAAAAAAA

Gap no gap
Contig length 897
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 260067
End point 260964
Strand (PLUS/MINUS) PLUS
Number of clones 4
Number of EST 4
Link to clone list U14720
List of clone(s)

est1=SSF494E,1,892
est2=VSH229E,44,826
est3=VHO478E,54,788
est4=VSG601F,603,898
Translated Amino Acid sequence
ktryqvsficilhh*linl**i*kikettierihkrwrmikinnnnnnkannnnhnkrnk
nksmli*vhskvkkelnisih*lpiviilqlqknlknf*IFKSTKIHIYSKQIQHSLNYI
NLTQTHLNKDSIAKMLAKALMNFPCNDFLFLSYMIPSIIQKEEPLLKLFILNNFLETCKF
KEAWTHINSHSFFSEIPSFIDNIRNFISGVLSITYQNISITMLGELLNLSDRTQLVDYIQ
SKQPTWKISDSTVSLQSDNSKQKKADTFTFDQLSRILPTFIK*if*nlnsnnkkiikkk


Translated Amino Acid sequence (All Frames)
Frame A:
ktryqvsficilhh*linl**i*kikettierihkrwrmikinnnnnnkannnnhnkrnk
nksmli*vhskvkkelnisih*lpiviilqlqknlknf*IFKSTKIHIYSKQIQHSLNYI
NLTQTHLNKDSIAKMLAKALMNFPCNDFLFLSYMIPSIIQKEEPLLKLFILNNFLETCKF
KEAWTHINSHSFFSEIPSFIDNIRNFISGVLSITYQNISITMLGELLNLSDRTQLVDYIQ
SKQPTWKISDSTVSLQSDNSKQKKADTFTFDQLSRILPTFIK*if*nlnsnnkkiikkk


Frame B:
krvikyrlsvsfiid*sifnkfekskkpr*svyikdge*srsttttttkpttttttrgtr
tsrc*fkftprsrkn*iyqyincr*l*ycnckkt*rifrysnqrkyifipskfntp*iis
i*pkpt*tkiqsprc*qrh**ishattfysspi*fhrsfkrrnhc*nslssttf*rlvnl
kklgpisivihsfqrsqvssttletlslvyslslikifqspcwvnf*iylivlnssiifn
qnnqlgksliqlflynliiqnkrklillllinsqesfqlllnkyfri*tviikk*lkk


Frame C:
nalssivylypsslinqslinlknqrnhdrayt*kmendqdqqqqqqqsqqqqpqqeeqe
qvdvdlsslqgqerieyintliadsyniaiakkleefldiqinentylfqanstllklyq
fnpnplkqrfnrqdvskginefpmqrlfipllydsidhskggtivktlypqqlfrdl*i*
rsldpyq*sfilfrdpkfhrqh*klylwctlyhlskyfnhhvg*tfkfi*systrrlysi
kttnlenl*fncffti**fktkes*yfyf*stlknpsnfy*inilefkq***knn*kk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14720-1 (Contig-U14720-1Q)
/CSM_Contig/Contig-U14720-1Q.Seq.d
(897 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Conti... 1328 0.0
Contig-U09523-1 (Contig-U09523-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U13817-1 (Contig-U13817-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U13619-1 (Contig-U13619-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U08399-1 (Contig-U08399-1Q) /CSM_Contig/Conti... 36 0.063
Contig-U14805-1 (Contig-U14805-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U14264-1 (Contig-U14264-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U12435-1 (Contig-U12435-1Q) /CSM_Contig/Conti... 34 0.25
Contig-U12244-1 (Contig-U12244-1Q) /CSM_Contig/Conti... 34 0.25

>Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Contig-U14720-1Q.Seq.d
Length = 897

Score = 1328 bits (670), Expect = 0.0
Identities = 684/691 (98%)
Strand = Plus / Plus


Query: 186 gtcgatgttgatttaagttcactccaaggtcaagaaagaattgaatatatcaatacatta 245
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 186 gtcgatgttgatttaagttcactccaaggtcaagaaagaattgaatatatcaatacatta 245


Query: 246 attgccgatagttataatattgcaattgcnnnnnnncttgaagaatttttagatattcaa 305
||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 246 attgccgatagttataatattgcaattgcaaaaaaacttgaagaatttttagatattcaa 305


Query: 306 atcaacgaaaatacatatttattccaagcaaattcaacactccttaaattatatcaattt 365
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 atcaacgaaaatacatatttattccaagcaaattcaacactccttaaattatatcaattt 365


Query: 366 aacccaaacccacttaaacaaagattcaatcgccaagatgttagcaaaggcattaatgaa 425
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 aacccaaacccacttaaacaaagattcaatcgccaagatgttagcaaaggcattaatgaa 425


Query: 426 tttcccatgcaacgactttttattcctctcctatatgattccatcgatcattcaaaagga 485
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tttcccatgcaacgactttttattcctctcctatatgattccatcgatcattcaaaagga 485


Query: 486 ggaaccattgttaaaactctttatcctcaacaactttttagagacttgtaaatttaaaga 545
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 ggaaccattgttaaaactctttatcctcaacaactttttagagacttgtaaatttaaaga 545


Query: 546 agcttggacccatatcaatagtcattcattcttttcagagatcccaagtttcatcgacaa 605
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 546 agcttggacccatatcaatagtcattcattcttttcagagatcccaagtttcatcgacaa 605


Query: 606 cattagaaactttatctctggtgtactctctatcacttatcaaaatatttcaatcaccat 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 606 cattagaaactttatctctggtgtactctctatcacttatcaaaatatttcaatcaccat 665


Query: 666 gttgggtgaacttttaaatttatctgatcgtactcaactcgtcgattatattcaatcaaa 725
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 666 gttgggtgaacttttaaatttatctgatcgtactcaactcgtcgattatattcaatcaaa 725


Query: 726 acaaccaacttggaaaatctctgattcaactgtttctttacaatctgataattcaaaaca 785
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 726 acaaccaacttggaaaatctctgattcaactgtttctttacaatctgataattcaaaaca 785


Query: 786 aaagaaagctgatacttttacttttgatcaactctcaagaatccttccaacttttattaa 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 786 aaagaaagctgatacttttacttttgatcaactctcaagaatccttccaacttttattaa 845


Query: 846 ataaatattttagaatttaaacagtaataat 876
|||||||||||||||||||||||||||||||
Sbjct: 846 ataaatattttagaatttaaacagtaataat 876


Score = 248 bits (125), Expect = 9e-66
Identities = 125/125 (100%)
Strand = Plus / Plus


Query: 1 aaaacgcgttatcaagtatcgtttatctgtatccttcatcattgattaatcaatctttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaacgcgttatcaagtatcgtttatctgtatccttcatcattgattaatcaatctttaa 60


Query: 61 taaatttgaaaaatcaaagaaaccacgatagagcgtatacataaaagatggagaatgatc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 taaatttgaaaaatcaaagaaaccacgatagagcgtatacataaaagatggagaatgatc 120


Query: 121 aagat 125
|||||
Sbjct: 121 aagat 125


>Contig-U09523-1 (Contig-U09523-1Q) /CSM_Contig/Contig-U09523-1Q.Seq.d
Length = 944

Score = 40.1 bits (20), Expect = 0.004
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 59 aataaatttgaaaaatcaaa 78
||||||||||||||||||||
Sbjct: 780 aataaatttgaaaaatcaaa 799


>Contig-U13817-1 (Contig-U13817-1Q) /CSM_Contig/Contig-U13817-1Q.Seq.d
Length = 428

Score = 36.2 bits (18), Expect = 0.063
Identities = 18/18 (100%)
Strand = Plus / Minus


Query: 55 ctttaataaatttgaaaa 72
||||||||||||||||||
Sbjct: 312 ctttaataaatttgaaaa 295


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,171
Number of Sequences: 6905
Number of extensions: 13171
Number of successful extensions: 1511
Number of sequences better than 10.0: 186
length of query: 897
length of database: 5,674,871
effective HSP length: 16
effective length of query: 881
effective length of database: 5,564,391
effective search space: 4902228471
effective search space used: 4902228471
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.29
Homology vs DNA
Query= Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Contig-U14720-1Q.Seq.d
(897 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU267104) Dictyostelium discoideum vegetative cDNA clone:VS... 1080 0.0 2
(C93029) Dictyostelium discoideum slug cDNA, clone SSF494. 922 0.0 3
(BJ426689) Dictyostelium discoideum cDNA clone:ddv59l20, 5' ... 605 0.0 5
(AU267103) Dictyostelium discoideum vegetative cDNA clone:VS... 476 0.0 4
(BJ445570) Dictyostelium discoideum cDNA clone:ddv59l20, 3' ... 632 0.0 2
(AU266652) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1
(AU072941) Dictyostelium discoideum slug cDNA, clone SSF494. 248 5e-86 2
(EJ616900) 1092963025020 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.20 3
(EJ290522) 1095375003051 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.49 2
(AC216416) Populus trichocarpa clone POP048-M18, complete se... 48 0.58 1
(BH931134) odi87c09.b1 B.oleracea002 Brassica oleracea genom... 48 0.58 1
(AU199496) Caenorhabditis elegans cDNA clone:yk765g05 : 5' e... 44 1.3 2
(BX188296) Danio rerio genomic clone DKEY-203D23, genomic su... 36 1.5 2
(CV123214) OSTF30007A09 pDONR201 Entry vector Caenorhabditis... 44 1.7 2
(AC149931) Strongylocentrotus purpuratus clone R3-17E1, WORK... 46 2.3 1
(AC184622) Strongylocentrotus purpuratus clone R3-3026D3, WO... 46 2.3 1
(AC180634) Strongylocentrotus purpuratus clone R3-3090K14, W... 46 2.3 1
(AC180627) Strongylocentrotus purpuratus clone R3-3090H23, W... 46 2.3 1
(AC180327) Strongylocentrotus purpuratus clone R3-3118H10, W... 46 2.3 1
(AC180087) Strongylocentrotus purpuratus clone R3-4008L11, W... 46 2.3 1
(AC179375) Strongylocentrotus purpuratus clone R3-59N5, WORK... 46 2.3 1
(BH467858) BOHAW77TF BOHA Brassica oleracea genomic clone BO... 46 2.3 1
(BG782382) SEAUMC002339 Sea urchin primary mesenchyme cell c... 46 2.3 1
(FE791254) CCAG17998.b1 CCAG Petrolisthes cinctipes heart, g... 46 2.3 1
(AC157947) Mus musculus BAC clone RP23-238L21 from chromosom... 38 2.3 4
(AL845493) Zebrafish DNA sequence from clone DKEYP-77C8 in l... 38 2.4 5
(CT027698) Zebrafish DNA sequence from clone CH211-283L5 in ... 38 3.2 5
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 3.4 11
(Z92849) Caenorhabditis elegans Fosmid H12D21. 44 3.9 2
(AC197182) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 4.5 4
(CU695291) Brassica rapa subsp. pekinensis clone KBrH015G18,... 38 5.6 4
(AM507790) Paracentrotus lividus EST, clone MPMGp1171D1016Q,... 34 5.8 2
(AM526244) Paracentrotus lividus EST, clone MPMGp1171E0260Q,... 34 5.8 2
(AM512223) Paracentrotus lividus EST, clone MPMGp1171F1255Q,... 34 5.8 2
(AM520051) Paracentrotus lividus EST, clone MPMGp1171D2256Q,... 34 5.8 2
(AM545342) Paracentrotus lividus EST, clone MPMGp1171I10201Q... 34 5.8 2
(CL902427) CSHC1802 1639HC library Triticum aestivum genomic... 34 5.9 2
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 6.9 5
(AZ670085) ENTHB59TR Entamoeba histolytica Sheared DNA Entam... 36 7.0 2
(BH134107) ENTOY42TF Entamoeba histolytica Sheared DNA Entam... 36 7.2 2
(BH133191) ENTNY84TR Entamoeba histolytica Sheared DNA Entam... 36 8.3 2
(BX510959) Zebrafish DNA sequence from clone CH211-51A19 in ... 44 9.0 1
(BK003159) TPA_inf: Drosophila melanogaster HDC19174 (HDC191... 44 9.0 1
(AC157823) Mus musculus BAC clone RP23-382L21 from chromosom... 44 9.0 1
(AC154282) Mus musculus BAC clone RP24-273O7 from chromosome... 44 9.0 1
(AY794638) Ophthalmoblapton pedunculare tRNA-Leu (trnL) gene... 44 9.0 1
(AF208933) Smithia ciliata tRNA-Leu (trnL) gene, partial int... 44 9.0 1
(AE014298) Drosophila melanogaster chromosome X, complete se... 44 9.0 1
(AC010707) Drosophila melanogaster clone BACR06P10, complete... 44 9.0 1
(AC009256) Drosophila melanogaster clone BACR03G18, complete... 44 9.0 1
(AP003398) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 9.0 1
(AC097483) Homo sapiens BAC clone RP11-146N10 from 2, comple... 44 9.0 1
(AC134646) Rattus norvegicus clone CH230-158A16, *** SEQUENC... 44 9.0 1
(AC130108) Rattus norvegicus clone CH230-120D19, WORKING DRA... 44 9.0 1
(AC105572) Rattus norvegicus clone CH230-233B19, WORKING DRA... 44 9.0 1
(AC098775) Rattus norvegicus clone CH230-39B9, WORKING DRAFT... 44 9.0 1
(Z82063) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE... 44 9.0 1
(AC026059) Homo sapiens chromosome 11 clone RP11-170L9, WORK... 44 9.0 1
(CR548628) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 9.0 1
(AC014295) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 9.0 1
(BH550713) BOHJN60TF BOHJ Brassica oleracea genomic clone BO... 44 9.0 1
(AZ229468) RPCI-23-65F5.TJ RPCI-23 Mus musculus genomic clon... 44 9.0 1
(FH095261) CHO_OF3035xd03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.0 1
(FH095177) CHO_OF3035xd03f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.0 1
(DU120925) KBrH101L15F Brassica rapa BAC library KBrH Brassi... 44 9.0 1
(CZ244635) AIAA-aaf19a16.g1 Ancylostoma caninum whole genome... 44 9.0 1
(CW855906) she2h27-33.b_091.ab1 Whole-genome shotgun library... 44 9.0 1
(AG591491) Mus musculus molossinus DNA, clone:MSMg01-520H11.... 44 9.0 1
(BX127190) Danio rerio genomic clone DKEY-71D17, genomic sur... 44 9.0 1
(DY547523) AGENCOURT_69875963 NIH_ZGC_28 Danio rerio cDNA cl... 44 9.0 1
(DC226747) Plasmodium berghei strain ANKA cDNA clone:SG00683... 44 9.0 1
(DC222515) Plasmodium berghei strain ANKA cDNA clone:MZ00597... 44 9.0 1
(DC220459) Plasmodium berghei strain ANKA cDNA clone:MZ00266... 44 9.0 1
(DC220128) Plasmodium berghei strain ANKA cDNA clone:MZ00211... 44 9.0 1
(C65234) Caenorhabditis elegans cDNA clone yk408b12 : 5' end... 44 9.0 1
(AM450901) Vitis vinifera, whole genome shotgun sequence, co... 36 9.4 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 9.5 8

>(AU267104) Dictyostelium discoideum vegetative cDNA clone:VSH229,
3' end single read.
Length = 609

Score = 1080 bits (545), Expect(2) = 0.0
Identities = 545/545 (100%)
Strand = Plus / Plus


Query: 282 cttgaagaatttttagatattcaaatcaacgaaaatacatatttattccaagcaaattca 341
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 cttgaagaatttttagatattcaaatcaacgaaaatacatatttattccaagcaaattca 124


Query: 342 acactccttaaattatatcaatttaacccaaacccacttaaacaaagattcaatcgccaa 401
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 acactccttaaattatatcaatttaacccaaacccacttaaacaaagattcaatcgccaa 184


Query: 402 gatgttagcaaaggcattaatgaatttcccatgcaacgactttttattcctctcctatat 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gatgttagcaaaggcattaatgaatttcccatgcaacgactttttattcctctcctatat 244


Query: 462 gattccatcgatcattcaaaaggaggaaccattgttaaaactctttatcctcaacaactt 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 gattccatcgatcattcaaaaggaggaaccattgttaaaactctttatcctcaacaactt 304


Query: 522 tttagagacttgtaaatttaaagaagcttggacccatatcaatagtcattcattcttttc 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tttagagacttgtaaatttaaagaagcttggacccatatcaatagtcattcattcttttc 364


Query: 582 agagatcccaagtttcatcgacaacattagaaactttatctctggtgtactctctatcac 641
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 agagatcccaagtttcatcgacaacattagaaactttatctctggtgtactctctatcac 424


Query: 642 ttatcaaaatatttcaatcaccatgttgggtgaacttttaaatttatctgatcgtactca 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ttatcaaaatatttcaatcaccatgttgggtgaacttttaaatttatctgatcgtactca 484


Query: 702 actcgtcgattatattcaatcaaaacaaccaacttggaaaatctctgattcaactgtttc 761
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 actcgtcgattatattcaatcaaaacaaccaacttggaaaatctctgattcaactgtttc 544


Query: 762 tttacaatctgataattcaaaacaaaagaaagctgatacttttacttttgatcaactctc 821
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tttacaatctgataattcaaaacaaaagaaagctgatacttttacttttgatcaactctc 604


Query: 822 aagaa 826
|||||
Sbjct: 605 aagaa 609

Score = 113 bits (57), Expect(2) = 0.0
Identities = 57/57 (100%)
Strand = Plus / Plus


Query: 218 agaaagaattgaatatatcaatacattaattgccgatagttataatattgcaattgc 274
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agaaagaattgaatatatcaatacattaattgccgatagttataatattgcaattgc 57

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 975,340,305
Number of extensions: 59457918
Number of successful extensions: 4912690
Number of sequences better than 10.0: 80
Length of query: 897
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 873
Effective length of database: 97,308,875,965
Effective search space: 84950648717445
Effective search space used: 84950648717445
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.12
Homology vs Protein
Query= Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Contig-U14720-1Q.Seq.d
(897 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

FN357914_18(FN357914|pid:none) Schistosoma mansoni genome sequen... 69 1e-16
FN313974_1(FN313974|pid:none) Schistosoma japonicum isolate Anhu... 60 4e-15
(A7SGZ5) RecName: Full=Eukaryotic translation initiation factor ... 80 9e-14
(B4KTN5) RecName: Full=Eukaryotic translation initiation factor ... 57 6e-13
EF638987_1(EF638987|pid:none) Triatoma infestans clone TI-336 eu... 77 1e-12
AK340635_1(AK340635|pid:none) Acyrthosiphon pisum ACYPI000023 mR... 76 2e-12
(B3MIY7) RecName: Full=Eukaryotic translation initiation factor ... 55 2e-12
BT061173_1(BT061173|pid:none) Zea mays full-length cDNA clone ZM... 75 2e-12
BT078498_1(BT078498|pid:none) Lepeophtheirus salmonis Pacific fo... 75 3e-12
(Q567V6) RecName: Full=Eukaryotic translation initiation factor ... 75 4e-12
BT073288_1(BT073288|pid:none) Oncorhynchus mykiss clone omyk-evn... 74 9e-12
BT046439_1(BT046439|pid:none) Salmo salar clone ssal-evf-569-214... 72 2e-11
BT049362_1(BT049362|pid:none) Salmo salar clone ssal-eve-537-047... 72 2e-11
BT049626_1(BT049626|pid:none) Salmo salar clone ssal-eve-525-207... 72 2e-11
BT047941_1(BT047941|pid:none) Salmo salar clone ssal-eve-522-129... 72 3e-11
DQ214222_1(DQ214222|pid:none) Taeniopygia guttata clone 0058P003... 72 3e-11
BC089069_1(BC089069|pid:none) Xenopus tropicalis eukaryotic tran... 72 3e-11
BT073561_1(BT073561|pid:none) Oncorhynchus mykiss clone omyk-evn... 72 3e-11
BT050599_1(BT050599|pid:none) Medicago truncatula clone MTYF5_F6... 72 3e-11
EU976688_1(EU976688|pid:none) Zea mays clone 987281 eukaryotic t... 50 5e-11
AF085358_1(AF085358|pid:none) Homo sapiens HSPC029 mRNA, complet... 71 6e-11
(Q9UBQ5) RecName: Full=Eukaryotic translation initiation factor ... 71 6e-11
BC027638_1(BC027638|pid:none) Mus musculus eukaryotic translatio... 70 1e-10
BT047149_1(BT047149|pid:none) Salmo salar clone ssal-evf-549-223... 70 1e-10
FJ384984_1(FJ384984|pid:none) Bombina orientalis eukaryotic tran... 70 1e-10
(Q94HF1) RecName: Full=Eukaryotic translation initiation factor ... 69 2e-10
AX970106_1(AX970106|pid:none) Sequence 909 from Patent EP1104808. 69 2e-10
(Q7QGK4) RecName: Full=Eukaryotic translation initiation factor ... 69 2e-10
BT049863_1(BT049863|pid:none) Salmo salar clone ssal-evd-575-122... 69 3e-10
EF083526_1(EF083526|pid:none) Picea sitchensis clone WS02721_O19... 68 4e-10
AK301035_1(AK301035|pid:none) Homo sapiens cDNA FLJ56725 complet... 68 5e-10
EU962622_1(EU962622|pid:none) Zea mays clone 244283 unknown mRNA. 68 5e-10
(Q177J8) RecName: Full=Eukaryotic translation initiation factor ... 67 8e-10
EF145845_1(EF145845|pid:none) Populus trichocarpa clone WS0113_L... 67 1e-09
(Q1HPS4) RecName: Full=Eukaryotic translation initiation factor ... 62 3e-08
(B0XEA7) RecName: Full=Eukaryotic translation initiation factor ... 60 1e-07
(B4G9X6) RecName: Full=Eukaryotic translation initiation factor ... 59 2e-07
CR940348_660(CR940348|pid:none) Theileria annulata strain Ankara... 59 2e-07
(B3NN00) RecName: Full=Eukaryotic translation initiation factor ... 57 6e-07
(B4P8V1) RecName: Full=Eukaryotic translation initiation factor ... 57 8e-07
EU968408_1(EU968408|pid:none) Zea mays clone 320505 unknown mRNA. 57 1e-06
(Q9W2D9) RecName: Full=Eukaryotic translation initiation factor ... 56 2e-06
(B4MIW0) RecName: Full=Eukaryotic translation initiation factor ... 56 2e-06
(B4I7U3) RecName: Full=Eukaryotic translation initiation factor ... 56 2e-06
AL008970_4(AL008970|pid:none) Plasmodium falciparum MAL3P4. &AL... 55 2e-06
(B4JVG7) RecName: Full=Eukaryotic translation initiation factor ... 55 2e-06
AK298635_1(AK298635|pid:none) Homo sapiens cDNA FLJ55131 complet... 54 7e-06
AY231716_1(AY231716|pid:none) Drosophila yakuba clone yak-em_CG1... 53 1e-05
EU968159_1(EU968159|pid:none) Zea mays clone 315706 eukaryotic t... 52 4e-05
AY667160_1(AY667160|pid:none) Felis catus clone E77 eukaryotic t... 52 4e-05
(A8QDN3) RecName: Full=Eukaryotic translation initiation factor ... 50 1e-04
(Q5KIN1) RecName: Full=Eukaryotic translation initiation factor ... 36 5e-04
EF576507_1(EF576507|pid:none) Oryza sativa (indica cultivar-grou... 47 7e-04
(A6SDU6) RecName: Full=Eukaryotic translation initiation factor ... 46 0.001
AX970107_1(AX970107|pid:none) Sequence 910 from Patent EP1104808. 45 0.003
(Q7S2R9) RecName: Full=Eukaryotic translation initiation factor ... 45 0.004
AX885806_1(AX885806|pid:none) Sequence 1669 from Patent EP1033401. 44 0.010
(Q4P4X6) RecName: Full=Eukaryotic translation initiation factor ... 44 0.010
(Q61K76) RecName: Full=Eukaryotic translation initiation factor ... 43 0.013
CU633457_252(CU633457|pid:none) Podospora anserina genomic DNA c... 43 0.016
EF502863_1(EF502863|pid:none) Arabidopsis lyrata subsp. petraea ... 43 0.016
(Q0CXN3) RecName: Full=Eukaryotic translation initiation factor ... 41 0.048
(Q0TXH0) RecName: Full=Eukaryotic translation initiation factor ... 41 0.062
AM920427_1610(AM920427|pid:none) Penicillium chrysogenum Wiscons... 40 0.082
(B0XY69) RecName: Full=Eukaryotic translation initiation factor ... 40 0.14
AP006716_1527(AP006716|pid:none) Staphylococcus haemolyticus JCS... 39 0.18
(A2R7B4) RecName: Full=Eukaryotic translation initiation factor ... 39 0.24
(Q5B8S5) RecName: Full=Eukaryotic translation initiation factor ... 37 0.69
AJ250862_1(AJ250862|pid:none) Bacillus sp. HIL-Y85/54728 mersaci... 36 2.0
AM494969_240(AM494969|pid:none) Leishmania braziliensis chromoso... 35 2.6
T34482(T34482) hypothetical protein W06B4.2 - Caenorhabditis ele... 35 2.6
AM910996_70(AM910996|pid:none) Plasmodium knowlesi strain H chro... 35 2.6
CP000109_456(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 34 5.8
CP000560_3545(CP000560|pid:none) Bacillus amyloliquefaciens FZB4... 34 7.6
BT052854_1(BT052854|pid:none) Medicago truncatula clone MTYFL_FM... 34 7.6
AJ002236_5(AJ002236|pid:none) Lycopersicon pimpinellifolium Cf-9... 34 7.6
AY941773_1(AY941773|pid:none) Medicago sativa retinoblastoma-rel... 34 7.6
BT034977_1(BT034977|pid:none) Zea mays full-length cDNA clone ZM... 34 7.6
(Q17XL1) RecName: Full=DNA ligase; EC=6.5.1.2; AltName:... 33 9.9
(Q6MTU2) RecName: Full=Valyl-tRNA synthetase; EC=6.1.1.... 33 10.0
CP000885_3718(CP000885|pid:none) Clostridium phytofermentans ISD... 33 10.0

>FN357914_18(FN357914|pid:none) Schistosoma mansoni genome sequence
supercontig Smp_scaff000623.
Length = 242

Score = 69.3 bits (168), Expect(2) = 1e-16
Identities = 41/121 (33%), Positives = 65/121 (53%), Gaps = 3/121 (2%)
Frame = +1

Query: 382 NKDSIAKMLAKALMNFPCNDFLFLSYMIPSIIQKEEPLLKLFILNNFLETCKFKEAWTHI 561
N + +L KA+++ +DF Y+I EEPL ++ L FLETC+F E WT +
Sbjct: 58 NAECARLVLLKAIISMSHSDFTLCKYLIHLEHLNEEPLSQVVKLGLFLETCRFSEFWTKV 117

Query: 562 NSH-SFFSEIPSFIDNIRNFISGVLSITYQNISITMLGELLNLS--DRTQLVDYIQSKQP 732
+ FS IP F +++ FI ++S TYQ IS +L L++S D Q + ++ +
Sbjct: 118 KENPKIFSAIPGFRESVCKFIVQIISQTYQRISKPLLMSFLDMSENDLKQFIKQLEWSET 177

Query: 733 T 735
T
Sbjct: 178 T 178

Score = 41.2 bits (95), Expect(2) = 1e-16
Identities = 24/50 (48%), Positives = 29/50 (58%)
Frame = +3

Query: 252 DSYNIAIAKKLEEFLDIQINENTYLFQANSTLLKLYQFNPNPLKQRFNRQ 401
+SYN LEE L QI N Y F+AN LL+LYQF P +RFN +
Sbjct: 15 ESYNPEHIAALEEHLSWQIINNDYDFEANLALLRLYQFYP----ERFNAE 60

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,191,348,470
Number of extensions: 21136694
Number of successful extensions: 59066
Number of sequences better than 10.0: 81
Number of HSP's gapped: 59015
Number of HSP's successfully gapped: 134
Length of query: 299
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 171
Effective length of database: 636,901,312
Effective search space: 108910124352
Effective search space used: 108910124352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.69 gvh: 0.58 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.34 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

36.0 %: nuclear
28.0 %: mitochondrial
28.0 %: cytoplasmic
4.0 %: cytoskeletal
4.0 %: vesicles of secretory system

>> prediction for Contig-U14720-1 is nuc

VS (DIR, S) 2
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0