Contig-U14720-1 |
Contig ID |
Contig-U14720-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
897 |
Chromosome number (1..6, M) |
6 |
Chromosome length |
3595308 |
Start point |
260067 |
End point |
260964 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
4 |
Link to clone list |
U14720 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.29 |
Homology vs DNA |
Query= Contig-U14720-1 (Contig-U14720-1Q) /CSM_Contig/Contig-U14720-1Q.Seq.d (897 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU267104) Dictyostelium discoideum vegetative cDNA clone:VS... 1080 0.0 2 (C93029) Dictyostelium discoideum slug cDNA, clone SSF494. 922 0.0 3 (BJ426689) Dictyostelium discoideum cDNA clone:ddv59l20, 5' ... 605 0.0 5 (AU267103) Dictyostelium discoideum vegetative cDNA clone:VS... 476 0.0 4 (BJ445570) Dictyostelium discoideum cDNA clone:ddv59l20, 3' ... 632 0.0 2 (AU266652) Dictyostelium discoideum vegetative cDNA clone:VS... 464 e-126 1 (AU072941) Dictyostelium discoideum slug cDNA, clone SSF494. 248 5e-86 2 (EJ616900) 1092963025020 Global-Ocean-Sampling_GS-29-01-01-1... 34 0.20 3 (EJ290522) 1095375003051 Global-Ocean-Sampling_GS-27-01-01-1... 40 0.49 2 (AC216416) Populus trichocarpa clone POP048-M18, complete se... 48 0.58 1 (BH931134) odi87c09.b1 B.oleracea002 Brassica oleracea genom... 48 0.58 1 (AU199496) Caenorhabditis elegans cDNA clone:yk765g05 : 5' e... 44 1.3 2 (BX188296) Danio rerio genomic clone DKEY-203D23, genomic su... 36 1.5 2 (CV123214) OSTF30007A09 pDONR201 Entry vector Caenorhabditis... 44 1.7 2 (AC149931) Strongylocentrotus purpuratus clone R3-17E1, WORK... 46 2.3 1 (AC184622) Strongylocentrotus purpuratus clone R3-3026D3, WO... 46 2.3 1 (AC180634) Strongylocentrotus purpuratus clone R3-3090K14, W... 46 2.3 1 (AC180627) Strongylocentrotus purpuratus clone R3-3090H23, W... 46 2.3 1 (AC180327) Strongylocentrotus purpuratus clone R3-3118H10, W... 46 2.3 1 (AC180087) Strongylocentrotus purpuratus clone R3-4008L11, W... 46 2.3 1 (AC179375) Strongylocentrotus purpuratus clone R3-59N5, WORK... 46 2.3 1 (BH467858) BOHAW77TF BOHA Brassica oleracea genomic clone BO... 46 2.3 1 (BG782382) SEAUMC002339 Sea urchin primary mesenchyme cell c... 46 2.3 1 (FE791254) CCAG17998.b1 CCAG Petrolisthes cinctipes heart, g... 46 2.3 1 (AC157947) Mus musculus BAC clone RP23-238L21 from chromosom... 38 2.3 4 (AL845493) Zebrafish DNA sequence from clone DKEYP-77C8 in l... 38 2.4 5 (CT027698) Zebrafish DNA sequence from clone CH211-283L5 in ... 38 3.2 5 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 3.4 11 (Z92849) Caenorhabditis elegans Fosmid H12D21. 44 3.9 2 (AC197182) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB... 36 4.5 4 (CU695291) Brassica rapa subsp. pekinensis clone KBrH015G18,... 38 5.6 4 (AM507790) Paracentrotus lividus EST, clone MPMGp1171D1016Q,... 34 5.8 2 (AM526244) Paracentrotus lividus EST, clone MPMGp1171E0260Q,... 34 5.8 2 (AM512223) Paracentrotus lividus EST, clone MPMGp1171F1255Q,... 34 5.8 2 (AM520051) Paracentrotus lividus EST, clone MPMGp1171D2256Q,... 34 5.8 2 (AM545342) Paracentrotus lividus EST, clone MPMGp1171I10201Q... 34 5.8 2 (CL902427) CSHC1802 1639HC library Triticum aestivum genomic... 34 5.9 2 (AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 6.9 5 (AZ670085) ENTHB59TR Entamoeba histolytica Sheared DNA Entam... 36 7.0 2 (BH134107) ENTOY42TF Entamoeba histolytica Sheared DNA Entam... 36 7.2 2 (BH133191) ENTNY84TR Entamoeba histolytica Sheared DNA Entam... 36 8.3 2 (BX510959) Zebrafish DNA sequence from clone CH211-51A19 in ... 44 9.0 1 (BK003159) TPA_inf: Drosophila melanogaster HDC19174 (HDC191... 44 9.0 1 (AC157823) Mus musculus BAC clone RP23-382L21 from chromosom... 44 9.0 1 (AC154282) Mus musculus BAC clone RP24-273O7 from chromosome... 44 9.0 1 (AY794638) Ophthalmoblapton pedunculare tRNA-Leu (trnL) gene... 44 9.0 1 (AF208933) Smithia ciliata tRNA-Leu (trnL) gene, partial int... 44 9.0 1 (AE014298) Drosophila melanogaster chromosome X, complete se... 44 9.0 1 (AC010707) Drosophila melanogaster clone BACR06P10, complete... 44 9.0 1 (AC009256) Drosophila melanogaster clone BACR03G18, complete... 44 9.0 1 (AP003398) Homo sapiens genomic DNA, chromosome 11q clone:RP... 44 9.0 1 (AC097483) Homo sapiens BAC clone RP11-146N10 from 2, comple... 44 9.0 1 (AC134646) Rattus norvegicus clone CH230-158A16, *** SEQUENC... 44 9.0 1 (AC130108) Rattus norvegicus clone CH230-120D19, WORKING DRA... 44 9.0 1 (AC105572) Rattus norvegicus clone CH230-233B19, WORKING DRA... 44 9.0 1 (AC098775) Rattus norvegicus clone CH230-39B9, WORKING DRAFT... 44 9.0 1 (Z82063) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE... 44 9.0 1 (AC026059) Homo sapiens chromosome 11 clone RP11-170L9, WORK... 44 9.0 1 (CR548628) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 44 9.0 1 (AC014295) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 44 9.0 1 (BH550713) BOHJN60TF BOHJ Brassica oleracea genomic clone BO... 44 9.0 1 (AZ229468) RPCI-23-65F5.TJ RPCI-23 Mus musculus genomic clon... 44 9.0 1 (FH095261) CHO_OF3035xd03r1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.0 1 (FH095177) CHO_OF3035xd03f1.ab1 CHO_OF3 Nicotiana tabacum ge... 44 9.0 1 (DU120925) KBrH101L15F Brassica rapa BAC library KBrH Brassi... 44 9.0 1 (CZ244635) AIAA-aaf19a16.g1 Ancylostoma caninum whole genome... 44 9.0 1 (CW855906) she2h27-33.b_091.ab1 Whole-genome shotgun library... 44 9.0 1 (AG591491) Mus musculus molossinus DNA, clone:MSMg01-520H11.... 44 9.0 1 (BX127190) Danio rerio genomic clone DKEY-71D17, genomic sur... 44 9.0 1 (DY547523) AGENCOURT_69875963 NIH_ZGC_28 Danio rerio cDNA cl... 44 9.0 1 (DC226747) Plasmodium berghei strain ANKA cDNA clone:SG00683... 44 9.0 1 (DC222515) Plasmodium berghei strain ANKA cDNA clone:MZ00597... 44 9.0 1 (DC220459) Plasmodium berghei strain ANKA cDNA clone:MZ00266... 44 9.0 1 (DC220128) Plasmodium berghei strain ANKA cDNA clone:MZ00211... 44 9.0 1 (C65234) Caenorhabditis elegans cDNA clone yk408b12 : 5' end... 44 9.0 1 (AM450901) Vitis vinifera, whole genome shotgun sequence, co... 36 9.4 2 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 9.5 8
>(AU267104) Dictyostelium discoideum vegetative cDNA clone:VSH229, 3' end single read. Length = 609
Score = 1080 bits (545), Expect(2) = 0.0 Identities = 545/545 (100%) Strand = Plus / Plus
Query: 282 cttgaagaatttttagatattcaaatcaacgaaaatacatatttattccaagcaaattca 341 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 65 cttgaagaatttttagatattcaaatcaacgaaaatacatatttattccaagcaaattca 124
Query: 342 acactccttaaattatatcaatttaacccaaacccacttaaacaaagattcaatcgccaa 401 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 125 acactccttaaattatatcaatttaacccaaacccacttaaacaaagattcaatcgccaa 184
Query: 402 gatgttagcaaaggcattaatgaatttcccatgcaacgactttttattcctctcctatat 461 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 185 gatgttagcaaaggcattaatgaatttcccatgcaacgactttttattcctctcctatat 244
Query: 462 gattccatcgatcattcaaaaggaggaaccattgttaaaactctttatcctcaacaactt 521 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 245 gattccatcgatcattcaaaaggaggaaccattgttaaaactctttatcctcaacaactt 304
Query: 522 tttagagacttgtaaatttaaagaagcttggacccatatcaatagtcattcattcttttc 581 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 305 tttagagacttgtaaatttaaagaagcttggacccatatcaatagtcattcattcttttc 364
Query: 582 agagatcccaagtttcatcgacaacattagaaactttatctctggtgtactctctatcac 641 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 365 agagatcccaagtttcatcgacaacattagaaactttatctctggtgtactctctatcac 424
Query: 642 ttatcaaaatatttcaatcaccatgttgggtgaacttttaaatttatctgatcgtactca 701 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 425 ttatcaaaatatttcaatcaccatgttgggtgaacttttaaatttatctgatcgtactca 484
Query: 702 actcgtcgattatattcaatcaaaacaaccaacttggaaaatctctgattcaactgtttc 761 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 485 actcgtcgattatattcaatcaaaacaaccaacttggaaaatctctgattcaactgtttc 544
Query: 762 tttacaatctgataattcaaaacaaaagaaagctgatacttttacttttgatcaactctc 821 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 545 tttacaatctgataattcaaaacaaaagaaagctgatacttttacttttgatcaactctc 604
Query: 822 aagaa 826 ||||| Sbjct: 605 aagaa 609
Score = 113 bits (57), Expect(2) = 0.0 Identities = 57/57 (100%) Strand = Plus / Plus
Query: 218 agaaagaattgaatatatcaatacattaattgccgatagttataatattgcaattgc 274 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 agaaagaattgaatatatcaatacattaattgccgatagttataatattgcaattgc 57
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 975,340,305 Number of extensions: 59457918 Number of successful extensions: 4912690 Number of sequences better than 10.0: 80 Length of query: 897 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 873 Effective length of database: 97,308,875,965 Effective search space: 84950648717445 Effective search space used: 84950648717445 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.12 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
1 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |