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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02803-1
Contig ID Contig-U02803-1
Contig update 2001. 8.29
Contig sequence 
>Contig-U02803-1 (Contig-U02803-1Q) /CSM_Contig/Contig-U02803-1Q.Seq.d
TAACCCATTAACACAAGCAGGTTTAACTTATGGGTTAAATTATGGTCAAA
CCTTATTTTCAGGTGGTAAACAATATGTAGATTCAAATTTTGGAAAATAT
TTTTCATTTTCAACATTAAAACCATATTTCAATGTAAACAATTCATATGT
ATTTAATAAAATAAAATTATTGATTTTCCCATATACTCAAAAGACATGGA
AGAGAAGAATTGGTAGAACAAGTGATGTTGATAGTTATCTTCCACCAAGA
GATGATATTAATGCACCAGATTTATATATTCCTTTGATGGCATTCATCAC
TTACTTTTTATTGTATGGTTTTCAAATGGGTATGGAAAAGAAATTCTCTC
CAGATTATTTAGGTGCTTGTATCACTAAAGGTATAGTTTTTTGGGCAATC
GAATTATTGATCTTCAAATGTGGTTTCTTTTTTTCAAATTCAAATTCAAT
TCCATTCTATGATATGATATCTTATTCTGGTTATAAATATGTTTTAATGG
TTATATTCCAAATTGCAACAATTTTACTTGGTAGTTATGTATCATACATT
ATAAAATGTGTATTATCAGTATCAATTGCATTTTTCATGTTAAAAACATT
AAGATTAGTTTTCTCCTCAGTTTCTGGTGTANCTGCTCCT
Gap no gap
Contig length 640
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1076607
End point 1077232
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U02803
List of clone(s) 

est1=AFI759Z,1,641
est2=AFK745Z,5,622
Translated Amino Acid sequence 
NPLTQAGLTYGLNYGQTLFSGGKQYVDSNFGKYFSFSTLKPYFNVNNSYVFNKIKLLIFP
YTQKTWKRRIGRTSDVDSYLPPRDDINAPDLYIPLMAFITYFLLYGFQMGMEKKFSPDYL
GACITKGIVFWAIELLIFKCGFFFSNSNSIPFYDMISYSGYKYVLMVIFQIATILLGSYV
SYIIKCVLSVSIAFFMLKTLRLVFSSVSGVXAP
Translated Amino Acid sequence (All Frames) 
Frame A:
*pintsrfnlwvklwsnlifrw*ticrfkfwkiffifniktifqckqfici**nkiidfp
iyskdmeeknw*nk*c**lsstkr*y*ctrfiysfdgihhllfivwfsngygkeilsrlf
rclyh*rysflgnriidlqmwflffkfkfnsil*ydilfwl*icfngyipncnnftw*lc
iihykmciisincifhvknikisfllsfwcxcs


Frame B:
NPLTQAGLTYGLNYGQTLFSGGKQYVDSNFGKYFSFSTLKPYFNVNNSYVFNKIKLLIFP
YTQKTWKRRIGRTSDVDSYLPPRDDINAPDLYIPLMAFITYFLLYGFQMGMEKKFSPDYL
GACITKGIVFWAIELLIFKCGFFFSNSNSIPFYDMISYSGYKYVLMVIFQIATILLGSYV
SYIIKCVLSVSIAFFMLKTLRLVFSSVSGVXAP


Frame C:
th*hkqv*lmg*imvkpyfqvvnnm*iqilenifhfqh*nhism*tihmylik*ny*fsh
ilkrhgreelveqvmlivifhqemilmhqiyifl*whssltfycmvfkwvwkrnslqii*
vlvslkv*ffgqsny*ssnvvsffqiqiqfhsmi*ylilvinmf*wlysklqqfylvvmy
htl*nvyyqyqlhfsc*kh*d*fspqflvxll
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02803-1 (Contig-U02803-1Q)
/CSM_Contig/Contig-U02803-1Q.Seq.d
         (640 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02803-1 (Contig-U02803-1Q) /CSM_Contig/Conti...  1221  0.0
Contig-U10140-1 (Contig-U10140-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U12541-1 (Contig-U12541-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U12176-1 (Contig-U12176-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U12134-1 (Contig-U12134-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U05743-1 (Contig-U05743-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U05646-1 (Contig-U05646-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U04918-1 (Contig-U04918-1Q) /CSM_Contig/Conti...    36  0.045
Contig-U14676-1 (Contig-U14676-1Q) /CSM_Contig/Conti...    34  0.18
Contig-U14345-1 (Contig-U14345-1Q) /CSM_Contig/Conti...    34  0.18

>Contig-U02803-1 (Contig-U02803-1Q) /CSM_Contig/Contig-U02803-1Q.Seq.d
          Length = 640

 Score = 1221 bits (616), Expect = 0.0
 Identities = 633/640 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taacccattaacacaagcaggtttaacttatgggttaaattatggtcaaaccttattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   taacccattaacacaagcaggtttaacttatgggttaaattatggtcaaaccttattttc 60

                                                                       
Query: 61  aggtggtaaacaatatgtagattcaaattttggaaaatatttttcattttcaacattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aggtggtaaacaatatgtagattcaaattttggaaaatatttttcattttcaacattaaa 120

                                                                       
Query: 121 accatatttcaatgtaaacaattcatatgtatttaataaaataaaattattgattttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 accatatttcaatgtaaacaattcatatgtatttaataaaataaaattattgattttccc 180

                                                                       
Query: 181 atatactcaaaagacatggaagagaagaattggtagaacaagtgatgttgatagttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atatactcaaaagacatggaagagaagaattggtagaacaagtgatgttgatagttatct 240

                                                                       
Query: 241 tccaccaagagatgatattaatgcaccagatttatatattcctttgatggcattcatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 tccaccaagagatgatattaatgcaccagatttatatattcctttgatggcattcatcac 300

                                                                       
Query: 301 ttactttttattgtatggttttcaaatgggtatggaaaagaaattctctccagattattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ttactttttattgtatggttttcaaatgggtatggaaaagaaattctctccagattattt 360

                                                                       
Query: 361 aggtgcttgtatcactaaaggtatagttttttgggcaatcgaattattgatcttcaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aggtgcttgtatcactaaaggtatagttttttgggcaatcgaattattgatcttcaaatg 420

                                                                       
Query: 421 tggtttcnnnnnnncaaattcaaattcaattccattctatgatatgatatcttattctgg 480
           |||||||       ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 tggtttctttttttcaaattcaaattcaattccattctatgatatgatatcttattctgg 480

                                                                       
Query: 481 ttataaatatgttttaatggttatattccaaattgcaacaattttacttggtagttatgt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttataaatatgttttaatggttatattccaaattgcaacaattttacttggtagttatgt 540

                                                                       
Query: 541 atcatacattataaaatgtgtattatcagtatcaattgcatttttcatgttaaaaacatt 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 atcatacattataaaatgtgtattatcagtatcaattgcatttttcatgttaaaaacatt 600

                                                   
Query: 601 aagattagttttctcctcagtttctggtgtanctgctcct 640
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 aagattagttttctcctcagtttctggtgtanctgctcct 640


>Contig-U10140-1 (Contig-U10140-1Q) /CSM_Contig/Contig-U10140-1Q.Seq.d
          Length = 1218

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 159 aaataaaattattgatttt 177
           |||||||||||||||||||
Sbjct: 429 aaataaaattattgatttt 411


>Contig-U12541-1 (Contig-U12541-1Q) /CSM_Contig/Contig-U12541-1Q.Seq.d
          Length = 1390

 Score = 36.2 bits (18), Expect = 0.045
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 435 caaattcaaattcaattccatt 456
           ||||||||||||||||| ||||
Sbjct: 876 caaattcaaattcaatttcatt 897


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,309
Number of Sequences: 6905
Number of extensions: 12309
Number of successful extensions: 2211
Number of sequences better than 10.0: 204
length of query: 640
length of database: 5,674,871
effective HSP length: 16
effective length of query: 624
effective length of database: 5,564,391
effective search space: 3472179984
effective search space used: 3472179984
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2009. 5.21
Homology vs DNA 
Query= Contig-U02803-1 (Contig-U02803-1Q) /CSM_Contig/Contig-U02803-1Q.Seq.d
         (640 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ344143) Dictyostelium discoideum cDNA clone:dda18f15, 3' ...   846   0.0    2
(BJ343215) Dictyostelium discoideum cDNA clone:dda22j11, 3' ...   831   0.0    2
(CV685227) sjs2.13.6_C08_sjs2-13-6C08-T3 SJS Schistosoma jap...    54   2e-04  2
(AY809792) Schistosoma japonicum SJCHGC05273 protein mRNA, p...    54   4e-04  2
(AZ676756) ENTMT94TR Entamoeba histolytica Sheared DNA Entam...    58   4e-04  1
(CX097842) EHAHD10TR E. histolytica Normalized cDNA library ...    58   4e-04  1
(CX089074) EHADR85TR E. histolytica Normalized cDNA library ...    58   4e-04  1
(DY951070) CHPY7354.b1_C15.ab1 CHP(XYZ) plains sunflower Hel...    56   0.002  1
(FC839253) CBHI8228.fwd CBHI Metridium senile tentacle Metri...    56   0.002  1
(AM100235) Lutzomyia longipalpis EST clone SFM-03e01, SFM-03...    54   0.007  1
(AM100234) Lutzomyia longipalpis EST clone SFM-03e01, SFM-03...    54   0.007  1
(AM092619) Lutzomyia longipalpis EST clone NSFM-135d12, sequ...    54   0.007  1
(BY894150) Cryptomeria japonica cDNA clone: CMFL045_I18, 5'e...    54   0.007  1
(BY890207) Cryptomeria japonica cDNA clone: CMFL034_N03, 5'e...    54   0.007  1
(BJ938169) Cryptomeria japonica pollen cDNA, clone:CP10992, ...    54   0.007  1
(BJ936775) Cryptomeria japonica pollen cDNA, clone:CP10083, ...    54   0.007  1
(AC123675) Mus musculus chromosome 15, clone RP23-271I6, com...    42   0.041  4
(AC105233) Homo sapiens chromosome 8, clone RP11-52B19, comp...    48   0.041  2
(EC854547) HDE00002559 Hyperamoeba dachnaya Non-normalized (...    42   0.051  2
(AC167208) Bos taurus clone CH240-190N2, WORKING DRAFT SEQUE...    34   0.064  2
(DU344816) 1098313093885 CHORI-243 Ovis aries genomic clone ...    34   0.082  2
(DU403994) 1098448299829 CHORI-243 Ovis aries genomic clone ...    34   0.082  2
(DU437075) 1098415954244 CHORI-243 Ovis aries genomic clone ...    34   0.082  2
(AX345507) Sequence 578 from Patent WO0200928.                     36   0.090  4
(DK964841) Papilio xuthus mRNA, clone: PxutEST_HY2p15, 5' en...    50   0.10   1
(BX649390) Zebrafish DNA sequence from clone DKEY-261L2 in l...    40   0.12   6
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.16   15
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    34   0.16   15
(AC073539) Homo sapiens chromosome 19 clone RP11-157B13, com...    38   0.17   3
(CR940353) Theileria annulata genomic DNA chromosome 4.            46   0.21   2
(DX429070) BE1082_N01_F IASMA L1 HindIII BAC library Vitis v...    46   0.22   2
(EJ009227) 1095403573049 Global-Ocean-Sampling_GS-26-01-01-1...    42   0.23   2
(AC212929) Populus trichocarpa clone POP068-E20, complete se...    42   0.24   5
(CT239075) Sus scrofa genomic clone CH242-143I8, genomic sur...    38   0.26   2
(DU785603) APKH1203.b2 HF770_12-21-03 uncultured marine micr...    36   0.30   2
(AC092450) Homo sapiens chromosome 12 clone RP11-371M20, ***...    48   0.32   8
(AM469545) Vitis vinifera contig VV78X017612.4, whole genome...    40   0.41   2
(CT954307) N.leucogenys DNA sequence from clone CH271-270A22.      48   0.41   1
(AK126645) Homo sapiens cDNA FLJ44687 fis, clone BRACE3011634.     48   0.41   1
(AF252830) Homo sapiens chromosome 8 clone SCb-295j18 map p2...    48   0.41   1
(AF228730) Homo sapiens chromosome 8 clones SCb-332a23, CTB-...    48   0.41   1
(AC213233) Homo sapiens chromosome 8 clone ABC7_000040279600...    48   0.41   1
(AC193090) Homo sapiens chromosome 8 clone WI2-1590L12, comp...    48   0.41   1
(AC131269) Homo sapiens chromosome 8, clone RP11-416I21, com...    48   0.41   1
(AC130379) Homo sapiens chromosome 17, clone RP13-383M5, com...    48   0.41   1
(AC130366) Homo sapiens chromosome 8, clone RP11-1236K1, com...    48   0.41   1
(AC130365) Homo sapiens chromosome 8, clone RP11-1195F20, co...    48   0.41   1
(AC130352) Homo sapiens chromosome 8, clone RP11-419I17, com...    48   0.41   1
(AC130339) Homo sapiens chromosome 8, clone RP13-941O14, com...    48   0.41   1
(AC130337) Homo sapiens chromosome 8, clone RP13-204L4, comp...    48   0.41   1
(AC109324) Homo sapiens chromosome 8, clone CTD1-2308H5, com...    48   0.41   1
(AC108519) Homo sapiens BAC clone RP11-1286E23 from 4, compl...    48   0.41   1
(AC105214) Homo sapiens chromosome 8, clone RP11-354G4, comp...    48   0.41   1
(AC092745) Homo sapiens 12 BAC RP11-90D4 (Roswell Park Cance...    48   0.41   1
(AC092111) Homo sapiens 12 BAC RP11-266K4 (Roswell Park Canc...    48   0.41   1
(AC087203) Homo sapiens chromosome 8, clone RP11-351I21, com...    48   0.41   1
(AC153286) Bos taurus clone CH240-19N24, WORKING DRAFT SEQUE...    48   0.41   1
(AC144829) Homo sapiens chromosome 8 clone XXfos-87928G6 map...    48   0.41   1
(AC138201) Homo sapiens chromosome 8 clone RP11-98O19 map 8,...    48   0.41   1
(AC131279) Homo sapiens chromosome 8 clone RP11-449I16 map 8...    48   0.41   1
(AC130349) Homo sapiens chromosome 8 clone RP11-543O18 map 8...    48   0.41   1
(AC130338) Homo sapiens chromosome 18 clone RP13-266A13 map ...    48   0.41   1
(AC107459) Homo sapiens chromosome 8 clone RP11-313A1 map 8,...    48   0.41   1
(AC083981) Homo sapiens chromosome 8 clone RP11-171P17 map 8...    48   0.41   1
(AC080046) Homo sapiens chromosome 12 clone RP11-275O8 map 1...    48   0.41   1
(AC074340) Homo sapiens chromosome 8 clone RP11-8O7, WORKING...    48   0.41   1
(AC068974) Homo sapiens chromosome 8 clone RP11-351I21, WORK...    48   0.41   1
(AC068740) Homo sapiens chromosome 12 clone RP11-275O8 map 1...    48   0.41   1
(AC213110) Macaca mulatta chromosome UNKNOWN clone CH250-252...    48   0.41   1
(AC211868) Macaca mulatta chromosome UNKNOWN clone CH250-354...    48   0.41   1
(AC208510) Macaca mulatta chromosome UNKNOWN clone CH250-417...    48   0.41   1
(AC207033) Macaca mulatta chromosome UNKNOWN clone CH250-391...    48   0.41   1
(AC206726) Macaca mulatta chromosome UNKNOWN clone CH250-51L...    48   0.41   1
(AC206723) Macaca mulatta chromosome UNKNOWN clone CH250-465...    48   0.41   1
(AC206467) Macaca mulatta chromosome UNKNOWN clone CH250-260...    48   0.41   1
(AC206100) Macaca mulatta chromosome UNKNOWN clone CH250-183...    48   0.41   1
(AC205866) Macaca mulatta chromosome UNKNOWN clone CH250-191...    48   0.41   1
(AC173303) Bos taurus clone CH240-455K14, WORKING DRAFT SEQU...    48   0.41   1
(AC166402) Bos taurus clone CH240-184B24, WORKING DRAFT SEQU...    48   0.41   1
(AC022770) Homo sapiens clone RP11-363N10, WORKING DRAFT SEQ...    48   0.41   1
(FI161353) MUGQ_CH252P005D13Sp6_CH0261_061 CHORI-252 Vervet ...    48   0.41   1
(FI097985) MUGQ_CH252P473H09T7_CH0149_041 CHORI-252 Vervet M...    48   0.41   1
(EJ959788) 1093018996157 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.41   1
(EJ942114) 1093018894205 Global-Ocean-Sampling_GS-30-02-01-1...    48   0.41   1
(ED484778) MUGQ_CH252P113H08T7_CN66_026 CHORI-252 Vervet Mon...    48   0.41   1
(DX105341) MUGQ_CH252P019D24Sp6_GL331_046 CHORI-252 Vervet M...    48   0.41   1
(DX017844) KBrB010H03F KBrB, Brassica rapa BamHI BAC library...    48   0.41   1
(DU836813) MUGQ_CH252P014L15Sp6_GL288_006 CHORI-252 Vervet M...    48   0.41   1
(EL484685) CHUM650.b1_C20.ab1 CHU(LMS) puzzle sunflower Heli...    48   0.41   1
(EL482123) CHUM4119.b1_M22.ab1 CHU(LMS) puzzle sunflower Hel...    48   0.41   1
(EL479993) CHUM1974.b1_K13.ab1 CHU(LMS) puzzle sunflower Hel...    48   0.41   1
(EL426569) CHCM6004.b1_G14.ab1 CHC(LMS) Texas blueweed Helia...    48   0.41   1
(EL415728) CHCL4377.b1_B15.ab1 CHC(LMS) Texas blueweed Helia...    48   0.41   1
(EE613813) CHWM1238.b1_K21.ab1 CHW(LMS) silverleaf sunflower...    48   0.41   1
(EE532892) 46RDOAG_UP_037_H11_27DEC2004_081 O. Alba 46RDOAG ...    48   0.41   1
(EE456072) BNBS4DCT_UP_036_F01_26MAR2005_005 Brassica napus ...    48   0.41   1
(EE437816) 64ETCOT5_T3_008_E06_14JAN2005_040 Brassica napus ...    48   0.41   1
(EE436193) 5ETGS9H_UP_011_A01_04FEB2005_015 Brassica napus 5...    48   0.41   1
(DY920199) CHAY3582.b1_L07.ab1 CHA(XYZ) common wild sunflowe...    48   0.41   1
(DY915230) CHAY11125.b1_J22.ab1 CHA(XYZ) common wild sunflow...    48   0.41   1
(DR498441) WS02915.C21_K12 SS-IB-A-FL-15 Picea sitchensis cD...    48   0.41   1
(DR490770) WS02915.CR_K12 SS-IB-A-FL-15 Picea sitchensis cDN...    48   0.41   1
(AM388969) Brassica oleracea var. alboglabra EST, clone  AAF...    48   0.41   1
(AM385664) Brassica oleracea var. alboglabra EST, clone  AAF...    48   0.41   1
(AM058604) Brassica oleracea var. alboglabra EST, clone  AAF...    48   0.41   1
(FD955488) RS3G969TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    48   0.41   1
(FD942786) RS2GE58JQ RS2(RS) Raphanus sativus cDNA 3', mRNA ...    48   0.41   1
(EY949939) RS3E664TF RS3(RT) Raphanus sativus cDNA 5', mRNA ...    48   0.41   1
(EY945360) RS3E664JQ RS3(RT) Raphanus sativus cDNA 3', mRNA ...    48   0.41   1
(EX758873) RR2BQ80JQ RR2(MS) Raphanus raphanistrum subsp. ra...    48   0.41   1
(EX754573) RR2BQ80TF RR2(MS) Raphanus raphanistrum subsp. ra...    48   0.41   1
(EX136246) BR120076 root cDNA library KHRT Brassica rapa sub...    48   0.41   1
(EX104242) BR090532 seed and seedling cDNA library KFSD Bras...    48   0.41   1
(EX053446) BR038090 floral buds cDNA library KBFS Brassica r...    48   0.41   1
(EX052399) BR037043 floral buds cDNA library KBFS Brassica r...    48   0.41   1
(EV085439) BNSCS5CT_UP_109_A06_30MAY2007_048 Brassica napus ...    48   0.41   1
(EV077001) BNSCS4CT_UP_241_F07_24MAY2007_053 Brassica napus ...    48   0.41   1
(EV033775) BNSCS2CT_UP_247_G07_03MAY2007_051 Brassica napus ...    48   0.41   1
(ES967632) BNZB_UP_189_F08_13MAR2006_054 Brassica napus BNZB...    48   0.41   1
(ES937167) 39RDBRT_UP_092_E05_25JAN2006_039 Brassica rapa 39...    48   0.41   1
(ES928102) 26RDBNT_UP_099_F10_10MAR2006_070 Brassica napus 2...    48   0.41   1
(ES906459) BNARO5GH_T3_013_H05_30NOV2006_033 Brassica napus ...    48   0.41   1
(ES879092) WS02939.CR_L16 SS-IB-A-FL-15 Picea sitchensis cDN...    48   0.41   1
(CU468431) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   0.53   5
(AC116551) Dictyostelium discoideum chromosome 2 map complem...    34   0.59   7
(AC139600) Medicago truncatula chromosome 6 clone mth2-20m4,...    42   0.59   5
(AC140968) Sus scrofa clone RP44-467M16, WORKING DRAFT SEQUE...    40   0.59   5
(AC215492) Solanum lycopersicum chromosome 2 clone C02SLm012...    36   0.60   5
(FF321443) 280412230 Pea aphid whole body normalized full le...    42   0.62   2
(AC155209) Macropus eugenii clone ME_KBa-151B6, WORKING DRAF...    42   0.65   4
(CR925840) Zebrafish DNA sequence from clone DKEYP-52F9 in l...    44   0.70   3
(CL805082) OR_CBa0018F10.f OR_CBa Oryza rufipogon genomic cl...    40   0.71   2
(FH102015) CHO_OF3098xc23r1.ab1 CHO_OF3 Nicotiana tabacum ge...    38   0.84   2
(CU929851) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    34   0.88   6
(AL731534) Human DNA sequence from clone RP11-550A9 on chrom...    34   0.90   2
(AB007727) Arabidopsis thaliana genomic DNA, chromosome 5, P...    36   0.91   2
(AP010467) Lotus japonicus genomic DNA, chromosome 4, clone:...    34   0.92   5
(AL161794) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   0.92   6
(ER341100) 1092344347167 Global-Ocean-Sampling_GS-34-01-01-1...    38   1.0    2
(AC192552) Gallus gallus chromosome 3 clone CH261-132D12, **...    36   1.0    5
(EK244553) 1095460247293 Global-Ocean-Sampling_GS-31-01-01-1...    32   1.1    3
(EJ805409) 1093017455614 Global-Ocean-Sampling_GS-30-02-01-1...    32   1.1    2
(AC215358) Solanum lycopersicum chromosome 2 clone C02HBa002...    36   1.2    4
(AC004710) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   1.4    5
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    36   1.4    7
(AC141680) Apis mellifera clone CH224-55I19, WORKING DRAFT S...    44   1.5    3
(AC156668) Bos taurus clone CH240-65I7, WORKING DRAFT SEQUEN...    36   1.6    9
(AC154269) Mus musculus BAC clone RP24-259B17 from 13, compl...    46   1.6    1
(AC122934) Mus musculus BAC clone RP23-19A13 from 3, complet...    46   1.6    1
(CU151875) M.truncatula DNA sequence from clone MTH2-49J7 on...    46   1.6    1
(AM434804) Vitis vinifera contig VV78X033615.9, whole genome...    46   1.6    1
(AM431114) Vitis vinifera contig VV78X175832.7, whole genome...    46   1.6    1
(Z81133) Caenorhabditis elegans Cosmid T28B8.                      46   1.6    1
(AC136089) Rattus norvegicus clone CH230-436K23, *** SEQUENC...    46   1.6    1
(AC118168) Rattus norvegicus clone CH230-406G8, WORKING DRAF...    46   1.6    1
(AC094494) Rattus norvegicus clone CH230-4D21, *** SEQUENCIN...    46   1.6    1
(AC094225) Rattus norvegicus clone CH230-3B10, WORKING DRAFT...    46   1.6    1
(AC232429) Choloepus hoffmanni clone CH281-811F13, WORKING D...    46   1.6    1
(AC229637) Monodelphis domestica clone VMRC18-499F6, WORKING...    46   1.6    1
(AC223898) Bos taurus clone CH240-455E16, WORKING DRAFT SEQU...    46   1.6    1
(FI266492) CccaBb034-H10JR CccABb Cajanus cajan genomic clon...    46   1.6    1
(FI237436) CccaBb029-O11JF CccABb Cajanus cajan genomic clon...    46   1.6    1
(ER338094) 1092344323372 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.6    1
(EJ143725) 1092343675480 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.6    1
(CU787616) A BAC library has been constructed from PN40024 g...    46   1.6    1
(CE698421) tigr-gss-dog-17000368747668 Dog Library Canis lup...    46   1.6    1
(EL577636) Physarum00262 Physarum polycephalum starvation st...    46   1.6    1
(EE656039) CHES5685.b1_J06.ab1 CHE(LMS) serpentine sunflower...    46   1.6    1
(EC601589) Y47H05 YLX600 Hevea brasiliensis cDNA clone Y47H0...    46   1.6    1
(EC600796) Y52G01 YLX600 Hevea brasiliensis cDNA clone Y52G0...    46   1.6    1
(DY288793) IC0AAA70CD12RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY285609) IC0AAA63DD05RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY279552) IC0AAA49CH05RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY278457) IC0AAA46CG08RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY274341) IC0AAA36BG03RM2 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY268554) IC0AAA24CB03RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DY264188) IC0AAA13DD12RM1 CitNFL Citrus clementina cDNA 5',...    46   1.6    1
(DN291836) PL030008B20E06 cDNA from sexually mature hermapho...    46   1.6    1
(DK964842) Papilio xuthus mRNA, clone: PxutEST_HY2p15, 3' en...    46   1.6    1
(FD984663) RR4GR64JQ RR4(PB) Raphanus raphanistrum subsp. la...    46   1.6    1
(FD869502) CBHO14513.rev CBHO Volvox carteri f. nagariensis ...    46   1.6    1
(FD543918) RR2FQ86TF RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(FD543381) RR2FK57TF RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(FD539643) RR2FQ86JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(FD539224) RR2FK57JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(FC918047) IC0AAA13DD12RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC917743) IC0AAA24CB03RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC911825) IC0AAA63DD05RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC905108) IC0AAA36BG03RM2 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC896558) IC0AAA70CD12RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC893222) IC0AAA46CG08RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(FC885416) IC0AAA49CH05RM1 IVIA1 Citrus clementina cDNA clon...    46   1.6    1
(EY930247) RS1D857TF RS1(AR) Raphanus sativus var. oleiformi...    46   1.6    1
(EX922132) la63c01.g1 Cycas ovule - normalized (NYBG) Cycas ...    46   1.6    1
(EX761738) RR2CZ43JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(EX760406) RR2CE90JQ RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(EX758352) RR2CZ43TF RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(EX756640) RR2CE90TF RR2(MS) Raphanus raphanistrum subsp. ra...    46   1.6    1
(EX082821) BR067465 silique cDNA library KBSP Brassica rapa ...    46   1.6    1
(ES807901) UFL_639_83 Cotton fiber 0-10 day post anthesis Go...    46   1.6    1
(CP000099) Methanosarcina barkeri str. Fusaro, complete genome.    46   1.6    1
(AC012439) Homo sapiens clone RP11-11G23, WORKING DRAFT SEQU...    38   2.0    4
(AC188695) Taeniopygia guttata chromosome UNK clone TGMCBa-2...    34   2.1    5
(AC024033) Homo sapiens chromosome 3 clone RP11-215L17, WORK...    36   2.1    4
(BI746058) rm22b10.y1 Meloidogyne arenaria egg pAMP1 v1 Chia...    40   2.6    2
(CT971574) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.6    7
(AC119741) Homo sapiens 3 BAC RP11-570O24 (Roswell Park Canc...    36   2.9    4
(AX345323) Sequence 394 from Patent WO0200928.                     34   2.9    3
(CT573388) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    42   3.0    8
(EK027914) 1092955383149 Global-Ocean-Sampling_GS-31-01-01-1...    36   3.0    2
(CU633801) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   3.0    7
(AC149886) Xenopus (Silurana) tropicalis clone ISB-145C16, c...    40   3.1    3
(AC105834) Rattus norvegicus clone CH230-46C16, *** SEQUENCI...    32   3.1    2
(AC103082) Rattus norvegicus clone CH230-227E4, *** SEQUENCI...    32   3.1    2
(AC024830) Caenorhabditis elegans cosmid Y55F3BR, complete s...    36   3.1    3
(AC160755) Bos taurus clone CH240-91O18, WORKING DRAFT SEQUE...    36   3.2    8
(AL935115) Zebrafish DNA sequence from clone CH211-199D18 in...    32   3.2    2
(DW261534) UI-S-GG1-abe-n-24-0-UI.s1 UI-S-GG1 Euprymna scolo...    42   3.2    2
(CR589875) Zebrafish DNA sequence from clone DKEY-15K16 in l...    38   3.2    7
(AC209725) Zea mays chromosome 5 clone CH201-142C17; ZMMBBc0...    32   3.2    2
(AC202088) Zea mays chromosome 5 clone CH201-535P14; ZMMBBc0...    32   3.2    2
(AC096646) Homo sapiens BAC clone RP11-2F5 from 2, complete ...    32   3.2    2
(CC115092) NDL.69N16.T7 Notre Dame Liverpool Aedes aegypti g...    40   3.2    2
(AL096854) Human DNA sequence from clone RP1-224E15 on chrom...    32   3.3    2
(AC139150) Homo sapiens chromosome 17 clone RP11-498C9 map 1...    32   3.3    2
(AC034248) Homo sapiens chromosome 5 clone RP11-359D9, WORKI...    34   3.3    6
(BX538350) Cryptosporidium parvum chromosome 6, complete seq...    34   3.3    7
(AC025314) Homo sapiens chromosome 18 clone RP11-169D18 map ...    36   3.4    5
(AC172998) Bos taurus clone CH240-439M23, WORKING DRAFT SEQU...    34   3.4    6
(AC181345) Strongylocentrotus purpuratus clone R3-40H23, WOR...    44   3.5    4
(AC201301) Strongylocentrotus purpuratus clone R3-16I19, WOR...    32   3.6    8
(AC229722) Medicago truncatula clone mth2-18g18, WORKING DRA...    34   3.7    7
(AY553651) Glycine max 24 kDa seed coat protein gene, comple...    34   3.7    2
(CU856439) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   3.7    7
(EJ157933) 1092344036833 Global-Ocean-Sampling_GS-27-01-01-1...    40   3.8    2
(AC008345) Drosophila melanogaster clone BACR22J12, complete...    36   3.8    5
(AF016664) Caenorhabditis elegans cosmid D2062, complete seq...    34   4.0    4
(AC140081) Danio rerio strain Tue clone CH211-253G17, WORKIN...    34   4.1    6
(AM469183) Vitis vinifera contig VV78X221882.9, whole genome...    36   4.1    4
(CG133545) PUJDE34TD ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   4.2    2
(ET090930) QM0AAA16AD09RM1 CCL1 Citrus clementina genomic cl...    34   4.3    2
(AL139156) Human DNA sequence from clone RP4-800M22 on chrom...    38   4.3    4
(AC036155) Homo sapiens chromosome 8 clone RP11-352P8 map 8,...    36   4.3    6
(BZ758367) PUFBN50TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    32   4.3    2
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4...    36   4.3    10
(CG255916) OGVDA26TV ZM_0.7_1.5_KB Zea mays genomic clone ZM...    32   4.4    2
(AC176912) Strongylocentrotus purpuratus clone R3-32G2, WORK...    36   4.6    6
(FP085409) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   4.7    4
(AC177691) Strongylocentrotus purpuratus clone R3-1013G13, W...    36   4.7    5
(AL773593) Zebrafish DNA sequence from clone CH211-202N20 in...    34   4.7    9
(AC179309) Strongylocentrotus purpuratus clone R3-1105A8, WO...    40   4.9    3
(AC021507) Homo sapiens chromosome 2 clone RP11-176J6 map 2,...    36   4.9    3
(AC011715) Homo sapiens chromosome 8 clone RP11-22A24, WORKI...    36   5.0    3
(AC112489) Homo sapiens chromosome 3q clone RP11-21I23, WORK...    36   5.1    4
(AM458030) Vitis vinifera contig VV78X093717.2, whole genome...    38   5.1    2
(AL132862) Caenorhabditis elegans YAC Y73F8A.                      34   5.6    7
(AC154889) Bos taurus clone CH240-27I14, WORKING DRAFT SEQUE...    34   5.6    5
(CU695298) Brassica rapa subsp. pekinensis clone KBrH038B24,...    38   6.1    4
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    38   6.1    7
(CR954193) Medicago truncatula chromosome 5 clone mth2-27a1,...    34   6.3    5
(AC173023) Bos taurus clone CH240-307I16, WORKING DRAFT SEQU...    32   6.3    10
(CT737314) Pig DNA sequence from clone CH242-142H17 on chrom...    40   6.3    3
(AC208378) Populus trichocarpa clone JGIACSB249-L15, complet...    36   6.4    3
(CT025939) Zebrafish DNA sequence from clone DKEY-99P10 in l...    44   6.5    1
(CR759955) Zebrafish DNA sequence from clone DKEY-269G4 in l...    44   6.5    1
(CR386067) Gallus gallus finished cDNA, clone ChEST1035p4.         44   6.5    1
(BX000460) Zebrafish DNA sequence from clone CH211-15E22 in ...    44   6.5    1
(AC156501) Mus musculus BAC clone RP23-358M3 from chromosome...    44   6.5    1
(AC108781) Mus musculus, clone RP23-304K14, complete sequence.     44   6.5    1
(AC146133) Pan troglodytes BAC clone RP43-38C10 from chromos...    44   6.5    1
(AY347307) Penicillium marneffei strain MP1 mitochonrion, co...    44   6.5    1
(AM438342) Vitis vinifera, whole genome shotgun sequence, co...    44   6.5    1
(AC226519) Solanum lycopersicum chromosome 2 clone C02SLm002...    44   6.5    1
(AC226510) Solanum lycopersicum chromosome 2 clone C02HBa017...    44   6.5    1
(AC215395) Solanum lycopersicum chromosome 2 clone C02HBa014...    44   6.5    1
(AC212437) Solanum lycopersicum chromosome 11 clone C11HBa01...    44   6.5    1
(GC698399) Sequence 13644 from patent US 6812339.                  44   6.5    1
(Z82096) Caenorhabditis elegans Cosmid ZK909.                      44   6.5    1
(U60979) Caenorhabditis elegans programmed cell death specif...    44   6.5    1
(AC007317) Homo sapiens BAC clone RP11-414K7 from 2, complet...    44   6.5    1
(AC002477) Human PAC clone RP3-327A19 from Xq25-q26, complet...    44   6.5    1
(AC158274) Atelerix albiventris clone LB4-367L16, WORKING DR...    44   6.5    1
(AC131378) Strongylocentrotus purpuratus clone Sp117A3, *** ...    44   6.5    1
(AC112323) Rattus norvegicus clone CH230-172G11, *** SEQUENC...    44   6.5    1
(AC110930) Rattus norvegicus clone CH230-215F2, *** SEQUENCI...    44   6.5    1
(CU928070) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.5    1
(CU915469) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.5    1
(CU856022) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.5    1
(AC079189) Homo sapiens chromosome 11 clone RP11-414K17 map ...    44   6.5    1
(CU463906) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.5    1
(AP009901) Lotus japonicus genomic DNA, clone: LjT11L09, TM2...    44   6.5    1
(AL589985) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.5    1
(AC219218) Solanum lycopersicum chromosome 6 clone C06SLe008...    44   6.5    1
(AC196585) Macaca mulatta clone CH250-100C14, WORKING DRAFT ...    44   6.5    1
(AQ605132) HS_2119_B2_F06_T7C CIT Approved Human Genomic Spe...    44   6.5    1
(FH349989) CHO_OF4655xh21r1.ab1 CHO_OF4 Nicotiana tabacum ge...    44   6.5    1
(EK156417) 1095458006925 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.5    1
(EJ909212) 1093018530358 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.5    1
(EJ864247) 1093018253514 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.5    1
(EJ773791) 1092979401078 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.5    1
(EJ767818) 1092963327362 Global-Ocean-Sampling_GS-30-02-01-1...    44   6.5    1
(EJ230143) 1092402575765 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.5    1
(EJ104659) 1092343132435 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.5    1
(DU592906) OO__Ba0087F03.r OO__Ba Oryza officinalis genomic ...    44   6.5    1
(DE404288) Bombyx mori genomic DNA, BAC clone:5D3C.                44   6.5    1
(CU979198) Brassica napus GSS, clone JBnB085P18, end read, p...    44   6.5    1
(CU059686) Equus caballus GSS, BAC clone CH241-164A20, T7 en...    44   6.5    1
(AG543719) Mus musculus molossinus DNA, clone:MSMg01-457L12....    44   6.5    1
(AG225729) Lotus japonicus DNA, clone:LjB12n15_f.                  44   6.5    1
(EG623041) EMBRYOF095453I2 POSSUM_01-POSSUM-C-EMBRYO-2KB Tri...    44   6.5    1
(EC823871) SME00007310 esmbsro2 Sawyeria marylandensis cDNA,...    44   6.5    1
(EC822416) SME00008399 esmbsro2 Sawyeria marylandensis cDNA,...    44   6.5    1
(DY924285) CHAY7412.b1_H05.ab1 CHA(XYZ) common wild sunflowe...    44   6.5    1
(DW026930) CFW236-F06.x1d-t SHGC-CFW2 Gasterosteus aculeatus...    44   6.5    1
(DT587761) she01-25ms1-h07 She01 Saruma henryi cDNA clone sh...    44   6.5    1
(DT584647) she01-5ms4-g07 She01 Saruma henryi cDNA clone she...    44   6.5    1
(DT583393) she01-12ms4-f08 She01 Saruma henryi cDNA clone sh...    44   6.5    1
(DN201339) USDA-FP_136430 Asian citrus psyllid Diaphorina ci...    44   6.5    1
(DB776229) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.5    1
(DB761808) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.5    1
(DB755922) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.5    1
(DB751748) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.5    1
(DB736921) Apis mellifera head cDNA, RIKEN full-length enric...    44   6.5    1
(CX590967) TTE00031107 Amplicon Express - Conjugative Form T...    44   6.5    1
(AM055412) Polyplastron multivesiculatum EST, clone Pm03_C08.      44   6.5    1
(BU352065) 603529987F1 CSEQCHN69 Gallus gallus cDNA clone Ch...    44   6.5    1
(BU345060) 604171716F1 CSEQCHN68 Gallus gallus cDNA clone Ch...    44   6.5    1
(BU295122) 603736464F1 CSEQCHN56 Gallus gallus cDNA clone Ch...    44   6.5    1
(BU283802) 603865834F1 CSEQCHN54 Gallus gallus cDNA clone Ch...    44   6.5    1
(BU283757) 603602577F1 CSEQCHN54 Gallus gallus cDNA clone Ch...    44   6.5    1
(BU279686) 603867828F1 CSEQCHN54 Gallus gallus cDNA clone Ch...    44   6.5    1
(BQ120259) EST605835 mixed potato tissues Solanum tuberosum ...    44   6.5    1
(BI925570) EST545459 tomato flower, buds 0-3 mm Solanum lyco...    44   6.5    1
(BI924419) EST544308 tomato flower, buds 0-3 mm Solanum lyco...    44   6.5    1
(BI511278) BB160005A20A06.5 Bee Brain Normalized Library, BB...    44   6.5    1
(GD266247) USDA-FP_198001 Asian citrus psyllid testes (Hemip...    44   6.5    1
(FF574351) TTEER66THB Tetrahymena thermophila conjugation cD...    44   6.5    1
(ES463850) piTA001nF01.b1.ab1 PiTA - Interaction library bet...    44   6.5    1
(EU795129) Uncultured Rickettsiales bacterium ANIW_[384]097M...    44   6.5    1
(EU016579) Uncultured marine microorganism HF4000_097M14 fos...    44   6.5    1
(CP000853) Alkaliphilus oremlandii OhILAs, complete genome.        44   6.5    1
(CP000825) Prochlorococcus marinus str. MIT 9215, complete g...    44   6.5    1
(CP000108) Chlorobium chlorochromatii CaD3, complete genome.       44   6.5    1
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   6.6    8
(AC012450) Homo sapiens BAC clone RP11-351J7 from 2, complet...    36   6.8    3
(AC171563) Bos taurus clone CH240-276M17, WORKING DRAFT SEQU...    36   6.9    8
(AM461821) Vitis vinifera contig VV78X076849.15, whole genom...    38   7.1    4
(AM467112) Vitis vinifera contig VV78X086183.2, whole genome...    36   7.3    2
(AC195865) Zea mays chromosome 8 clone ZMMBBb-343M22; ZMMBBb...    42   7.3    2
(AC091125) Caenorhabditis elegans cosmid Y67D2, complete seq...    40   7.4    3
(Z82264) Caenorhabditis elegans Cosmid C49C3.                      40   7.5    4
(AM477306) Vitis vinifera, whole genome shotgun sequence, co...    36   7.6    3
(AC119525) Rattus norvegicus clone CH230-392O2, WORKING DRAF...    40   7.7    3
(DX496659) Cpl38558 Papaya Genomic DNA BAC Library Carica pa...    38   8.0    2
(AC177082) Strongylocentrotus purpuratus clone R3-1038A04, W...    36   8.2    4
(AC146584) Medicago truncatula clone mth2-68k18, complete se...    36   8.2    4
(DU110753) JBnY030D15F.1 Brassica napus BAC library JBnY Bra...    38   8.5    2
(AC008064) Homo sapiens BAC clone RP11-178E24 from 2, comple...    34   8.6    7
(FP236284) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   8.7    4
(AC211086) Solanum lycopersicum chromosome 6 clone C06SLm012...    32   8.7    7
(AM439009) Vitis vinifera contig VV78X148806.7, whole genome...    32   8.8    4
(DX493772) Cpl35630 Papaya Genomic DNA BAC Library Carica pa...    38   8.9    2
(AC212786) Macaca mulatta  BAC CH250-227D19 (Children's Hosp...    42   9.0    4
(AC202755) Callithrix jacchus clone CH259-211A21, WORKING DR...    40   9.0    4
(CF358312) rm89a05.y1 Meloidogyne arenaria J2 SMART pGEM Mel...    40   9.1    2
(EK119526) 1092963345389 Global-Ocean-Sampling_GS-31-01-01-1...    38   9.3    2
(FP102502) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   9.3    5
(CS605051) Sequence 4037 from Patent WO2007039234.                 42   9.4    2
(EL501913) 096_PFLAB1-M-P27B.AB1 Blood stage Plasmodium falc...    34   9.4    2
(BX001014) Zebrafish DNA sequence from clone DKEY-11C5 in li...    40   9.5    4
(CP000746) Actinobacillus succinogenes 130Z, complete genome.      30   9.5    2
(AM427836) Vitis vinifera contig VV78X200976.10, whole genom...    34   9.7    4
(CE563774) tigr-gss-dog-17000312698749 Dog Library Canis lup...    40   9.7    2
(DN186375) HO29J14w HO Hordeum vulgare cDNA clone HO29J14 3-...    40   10.0   2

>(BJ344143) Dictyostelium discoideum cDNA clone:dda18f15, 3' end,
           single read.
          Length = 641

 Score =  846 bits (427), Expect(2) = 0.0
 Identities = 427/427 (100%)
 Strand = Plus / Minus


Query: 1   taacccattaacacaagcaggtttaacttatgggttaaattatggtcaaaccttattttc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 taacccattaacacaagcaggtttaacttatgggttaaattatggtcaaaccttattttc 582


Query: 61  aggtggtaaacaatatgtagattcaaattttggaaaatatttttcattttcaacattaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 aggtggtaaacaatatgtagattcaaattttggaaaatatttttcattttcaacattaaa 522


Query: 121 accatatttcaatgtaaacaattcatatgtatttaataaaataaaattattgattttccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 521 accatatttcaatgtaaacaattcatatgtatttaataaaataaaattattgattttccc 462


Query: 181 atatactcaaaagacatggaagagaagaattggtagaacaagtgatgttgatagttatct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 461 atatactcaaaagacatggaagagaagaattggtagaacaagtgatgttgatagttatct 402


Query: 241 tccaccaagagatgatattaatgcaccagatttatatattcctttgatggcattcatcac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 tccaccaagagatgatattaatgcaccagatttatatattcctttgatggcattcatcac 342


Query: 301 ttactttttattgtatggttttcaaatgggtatggaaaagaaattctctccagattattt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttactttttattgtatggttttcaaatgggtatggaaaagaaattctctccagattattt 282


Query: 361 aggtgcttgtatcactaaaggtatagttttttgggcaatcgaattattgatcttcaaatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 281 aggtgcttgtatcactaaaggtatagttttttgggcaatcgaattattgatcttcaaatg 222


Query: 421 tggtttc 427
           |||||||
Sbjct: 221 tggtttc 215

 Score =  402 bits (203), Expect(2) = 0.0
 Identities = 206/206 (100%)
 Strand = Plus / Minus


Query: 435 caaattcaaattcaattccattctatgatatgatatcttattctggttataaatatgttt 494
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caaattcaaattcaattccattctatgatatgatatcttattctggttataaatatgttt 148


Query: 495 taatggttatattccaaattgcaacaattttacttggtagttatgtatcatacattataa 554
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 taatggttatattccaaattgcaacaattttacttggtagttatgtatcatacattataa 88


Query: 555 aatgtgtattatcagtatcaattgcatttttcatgttaaaaacattaagattagttttct 614
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 87  aatgtgtattatcagtatcaattgcatttttcatgttaaaaacattaagattagttttct 28


Query: 615 cctcagtttctggtgtanctgctcct 640
           ||||||||||||||||||||||||||
Sbjct: 27  cctcagtttctggtgtanctgctcct 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 952,883,540
Number of extensions: 64104078
Number of successful extensions: 6471092
Number of sequences better than 10.0: 376
Length of query: 640
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 616
Effective length of database: 99,340,224,878
Effective search space: 61193578524848
Effective search space used: 61193578524848
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.21
Homology vs Protein 
Query= Contig-U02803-1 (Contig-U02803-1Q) /CSM_Contig/Contig-U02803-1Q.Seq.d
         (640 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC046046_1(BC046046|pid:none) Danio rerio zgc:73136, mRNA (cDNA ...   152   6e-36
(Q6PC24) RecName: Full=Protein YIF1A; AltName: Full=YIP1-interac...   152   6e-36
FM992695_505(FM992695|pid:none) Candida dubliniensis CD36 chromo...   150   4e-35
(O95070) RecName: Full=Protein YIF1A; AltName: Full=YIP1-interac...   149   7e-35
AF004876_1(AF004876|pid:none) Homo sapiens 54TMp (54tm) mRNA, co...   147   3e-34
(Q3T196) RecName: Full=Protein YIF1A; AltName: Full=YIP1-interac...   146   4e-34
(Q91XB7) RecName: Full=Protein YIF1A; AltName: Full=YIP1-interac...   146   4e-34
AM270336_48(AM270336|pid:none) Aspergillus niger contig An15c009...   146   6e-34
BC158578_1(BC158578|pid:none) Rattus norvegicus Yip1 interacting...   145   7e-34
DQ440452_1(DQ440452|pid:none) Aedes aegypti clone AET-612 predic...   145   1e-33
(Q4FZQ0) RecName: Full=Protein YIF1B-B; AltName: Full=YIP1-inter...   144   2e-33
BC072309_1(BC072309|pid:none) Xenopus laevis hypothetical protei...   144   2e-33
AY118289_1(AY118289|pid:none) Drosophila melanogaster AT18469 fu...   143   4e-33
BT011135_1(BT011135|pid:none) Drosophila melanogaster GM14490 fu...   143   4e-33
AE014297_4153(AE014297|pid:none) Drosophila melanogaster chromos...   143   4e-33
FN318972_1(FN318972|pid:none) Schistosoma japonicum isolate Anhu...   142   6e-33
(Q6P301) RecName: Full=Protein YIF1B; AltName: Full=YIP1-interac...   142   8e-33
AM920435_1325(AM920435|pid:none) Penicillium chrysogenum Wiscons...   141   1e-32
(Q6GN58) RecName: Full=Protein YIF1B-A; AltName: Full=YIP1-inter...   141   1e-32
FN357336_29(FN357336|pid:none) Schistosoma mansoni genome sequen...   141   2e-32
CR382131_1074(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   139   7e-32
AE017343_186(AE017343|pid:none) Cryptococcus neoformans var. neo...   137   2e-31
BT072739_1(BT072739|pid:none) Salmo salar clone ssal-rgf-538-307...   137   3e-31
CU633899_59(CU633899|pid:none) Podospora anserina genomic DNA ch...   136   6e-31
(P87148) RecName: Full=Protein transport protein yif1; AltName: ...   135   8e-31
AK135529_1(AK135529|pid:none) Mus musculus 12 days embryo female...   134   3e-30
BC109331_1(BC109331|pid:none) Mus musculus Yip1 interacting fact...   134   3e-30
EF085130_1(EF085130|pid:none) Picea sitchensis clone WS02813_D10...   130   2e-29
AK020444_1(AK020444|pid:none) Mus musculus 12 days embryo embryo...   130   2e-29
(Q5BJH7) RecName: Full=Protein YIF1B; AltName: Full=YIP1-interac...   130   4e-29
AL138659_5(AL138659|pid:none) Arabidopsis thaliana DNA chromosom...   128   2e-28
BT081010_1(BT081010|pid:none) Caligus clemensi clone ccle-evs-51...   127   3e-28
BT010138_1(BT010138|pid:none) Arabidopsis thaliana At3g59500 gen...   126   6e-28
AC000107_24(AC000107|pid:none) Genomic sequence for Arabidopsis ...   126   6e-28
AL442113_8(AL442113|pid:none) Oryza sativa genomic DNA, chromoso...   124   2e-27
BT039078_1(BT039078|pid:none) Zea mays full-length cDNA clone ZM...   122   9e-27
BC014974_1(BC014974|pid:none) Homo sapiens Yip1 interacting fact...   122   9e-27
EU956046_1(EU956046|pid:none) Zea mays clone 1556163 protein YIF...   122   1e-26
EU974316_1(EU974316|pid:none) Zea mays clone 445965 protein YIF1...   122   1e-26
BT037719_1(BT037719|pid:none) Zea mays full-length cDNA clone ZM...   118   1e-25
EU959608_1(EU959608|pid:none) Zea mays clone 218849 protein YIF1...   117   3e-25
AP003539_7(AP003539|pid:none) Oryza sativa Japonica Group genomi...   116   5e-25
AK059836_1(AK059836|pid:none) Oryza sativa Japonica Group cDNA c...   116   5e-25
Z70781_2(Z70781|pid:none) Caenorhabditis elegans Cosmid F57A8, c...   111   2e-23
Z70781_3(Z70781|pid:none) Caenorhabditis elegans Cosmid F57A8, c...   111   2e-23
CR380956_343(CR380956|pid:none) Candida glabrata strain CBS138 c...   110   3e-23
CP000582_468(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...   110   3e-23
CU928170_109(CU928170|pid:none) Kluyveromyces thermotolerans str...   101   2e-20
AE016819_892(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...   101   2e-20
CP001332_24(CP001332|pid:none) Micromonas sp. RCC299 chromosome ...    99   1e-19
(Q6PEC3) RecName: Full=Protein YIF1B; AltName: Full=YIP1-interac...    91   4e-17
BC058153_1(BC058153|pid:none) Rattus norvegicus Yip1 interacting...    91   4e-17
CU571396_3(CU571396|pid:none) Zebrafish DNA sequence from clone ...    89   1e-16
AL929603_191(AL929603|pid:none) Trypanosoma brucei chromosome 1,...    65   2e-09
AY915271_1(AY915271|pid:none) Schistosoma japonicum SJCHGC04045 ...    60   5e-08
AM502238_118(AM502238|pid:none) Leishmania infantum chromosome 20.     54   3e-06
U96490_1(U96490|pid:none) Rattus norvegicus liver mRNA, complete...    49   9e-05
AL844507_196(AL844507|pid:none) Plasmodium falciparum 3D7 chromo...    46   0.001
DQ927304_36(DQ927304|pid:none) Tetrahymena paravorax strain RP m...    39   0.13
AF250387_2(AF250387|pid:none) Carsonella ruddii RNA polymerase b...    37   0.64
AY003872_19(AY003872|pid:none) Plasmodium vivax YAC 1H14, comple...    36   0.82
CP000844_21(CP000844|pid:none) Acaryochloris marina MBIC11017 pl...    36   0.83
AY047358_2(AY047358|pid:none) Staphylococcus aureus fusidic acid...    36   0.83
AM292600_21(AM292600|pid:none) Staphylococcus aureus antibiotic ...    36   0.83
AF256203_2(AF256203|pid:none) Squash leaf curl virus strain SLCV...    35   2.4
DQ285016_2(DQ285016|pid:none) Squash leaf curl virus isolate 10 ...    35   2.4
AF099922_1(AF099922|pid:none) Caenorhabditis elegans cosmid F56F...    35   2.4
T33632(T33632)hypothetical protein F56F11.5 - Caenorhabditis ele...    35   2.4
CP000076_5782(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c...    35   2.4
CP000764_1849(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    35   2.4
CP000932_1492(CP000932|pid:none) Campylobacter lari RM2100, comp...    35   2.4
CP000805_509(CP000805|pid:none) Treponema pallidum subsp. pallid...    34   3.2
CR628336_2856(CR628336|pid:none) Legionella pneumophila str. Par...    34   3.2
CP001185_393(CP001185|pid:none) Thermosipho africanus TCF52B, co...    34   3.2
AE000520_511(AE000520|pid:none) Treponema pallidum subsp. pallid...    34   3.2
CP000675_2977(CP000675|pid:none) Legionella pneumophila str. Cor...    34   3.2
CU468135_2572(CU468135|pid:none) Erwinia tasmaniensis strain ET1...    34   4.1
CP000103_713(CP000103|pid:none) Nitrosospira multiformis ATCC 25...    33   5.4
T16663(T16663)hypothetical protein R03G5.3 - Caenorhabditis eleg...    33   5.4
CP000679_2412(CP000679|pid:none) Caldicellulosiruptor saccharoly...    33   5.4
BT045119_1(BT045119|pid:none) Salmo salar clone ssal-rgf-512-276...    33   5.4
AC116963_55(AC116963|pid:none) Dictyostelium discoideum chromoso...    33   5.4
AY064391_2(AY064391|pid:none) Squash yellow mild mottle virus-[C...    33   7.0
BX538353_102(BX538353|pid:none) Cryptosporidium parvum chromosom...    33   7.0
BT084072_1(BT084072|pid:none) Zea mays full-length cDNA clone ZM...    33   7.0
CP001404_462(CP001404|pid:none) Sulfolobus islandicus Y.N.15.51,...    33   9.2
AF329453_1(AF329453|pid:none) Actinobacillus pleuropneumoniae st...    33   9.2
Z81039_13(Z81039|pid:none) Caenorhabditis elegans Cosmid C25D7, ...    33   9.2

>BC046046_1(BC046046|pid:none) Danio rerio zgc:73136, mRNA (cDNA
           clone IMAGE:5602557), partial cds.
          Length = 340

 Score =  152 bits (385), Expect = 6e-36
 Identities = 78/197 (39%), Positives = 123/197 (62%), Gaps = 2/197 (1%)
 Frame = +2

Query: 41  YGQTLFSGGKQYVDSNFGKYFSFSTLKPYFNVNNSYVFNKIKLLIFPYTQKTWKRRIGRT 220
           YG TL + GK  V+    ++ S + LK +F V+  YV  K+ LL+FPYT + W+ R  R
Sbjct: 109 YGSTLANQGKDIVNKEINRFMSVNKLKYFFAVDTKYVMKKLLLLMFPYTHQDWEVRYHR- 167

Query: 221 SDVDSYLPPRDDINAPDLYIPLMAFITYFLLYGFQMGMEKKFSPDYLGACITKGIVFWAI 400
              D+ L PR D+NAPDLYIP MAFITY LL G  +G++K+FSP+ LG C +  +V+  I
Sbjct: 168 ---DTPLTPRHDVNAPDLYIPTMAFITYILLAGMALGIQKRFSPEVLGLCASTALVWMII 224

Query: 401 ELLIFKCGFFFSNSNS-IPFYDMISYSGYKYVLMVIFQIATILLGSYVSYIIKCVLSVSI 577
           E+L+     +    ++ +  +D+++YSGYKYV M++     +L GS   Y+     S ++
Sbjct: 225 EVLVMLLSLYLLTVHTDLSTFDLVAYSGYKYVGMILTVFCGLLFGSDGYYVALAWSSCAL 284

Query: 578 AFFMLKTLRL-VFSSVS 625
            FF++++L++ + SS+S
Sbjct: 285 MFFIVRSLKMKILSSIS 301

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,076,348,759
Number of extensions: 22635168
Number of successful extensions: 55325
Number of sequences better than 10.0: 88
Number of HSP's gapped: 55213
Number of HSP's successfully gapped: 90
Length of query: 213
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 90
Effective length of database: 653,084,107
Effective search space: 58777569630
Effective search space used: 58777569630
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.83  gvh: 0.39  alm: 0.26  top: 0.80  tms: 0.27  mit: 0.23  mip: 0.12
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 1.00  m_ : 0.00 

	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 16.0 %: vacuolar
	 12.0 %: mitochondrial
	  8.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: cytoplasmic

>> prediction for Contig-U02803-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 2
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0