Contig-U14711-1
Contig ID Contig-U14711-1
Contig update 2002.12.18
Contig sequence
>Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Contig-U14711-1Q.Seq.d
AAATACTTATACAAATAAATAATATATATACTATCAGTAGTAAAAATGAA
CACTAATAATAAAAATGATTTTAAAAGTGTGTATGTTAGTTCAAGGGCAA
GAGATAATATATTGAAATATAAATATACAGGATGTGATTCCTCATTTATT
TCTATTCATATTATGAATCATTTTTGGAATTGGTTTGTAAATTTATTCCC
AAGATCATTTGCACCAAATTTAATTACATTATTTGGATTCATTTCAATTA
TAGTTAGTTATTTTGTAACATTATATTATATGGATAGAATGAATGGAGTA
GCACCAAAATGGTTATATTTATTTAATGCACTTTGTATATTCATTTATCA
AACAATGGATGCATGTGATGGTAAACAAGCACGTAGAGTCCAAGCATCGT
CTGGATTGGGTGAACTATTTGATCATGGTTGTGATGCAATGATCACCTAT
TTAGTGATGCAAACTTTTCAATCATCTCTTCAAGTTGGTGTTAATCAAAT
ATCATTTTTTACAACTCTTTGGATCATGTATGTATTTTTCATGGCTCAAT
TGGAACAATACTCAACCGGCGTTATGAATTTAGGTCATTTCGGGTCCGAC
TGAATCTCAATTCTCAATGATGGCTGGTCATATCTTTACCTTTTTCTATG
GTGAACAATTTTGGCTCAATACAATTAAATTTGAAAGTTTTGAAAATTCA
ATATAATCATTTAGTTTTATTAGTTGTAATTTTAGGTGGTGTTGGTACAA
TTTTATTAAATACTTTCTCAATTTTAAAAAATGGTAATGAATCAATTTTA
ACAAACATTATTAATTTAGTACCAATTTCAATATTGTTAGGAGTTTCAAT
TTATTGGGGCAAATATTCAACTGTAAATATTTTTGAAACTGCACCACATT
ATTTCATGGGTATTTTTGGAATTTTATTTGCTTTAGTAACTGGTAAATTG
ATTTTAGCTAGAATTTGTATGGATAAATTATCACCAATTCAATTAATTAT
GTTACCATTAATTGCTGTTATTTTAAATATTTATAAATTTAATGGTGAAT
TATTTGATGAAATTTTATTCACCAAAGTTTATTTCTTTGTTGTATTTATT
GTATATATTCATTTCGCTTATGATGTTGTAACATCACTAACTAAAGTTTT
AGACATTTATTGCTTTACATTAAAGAAATAAAAAACAAGACATAATAATA
ATAATAATAACTACTCAAATAAATTAAATAATTATAAAAA

Gap no gap
Contig length 1240
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 734643
End point 735853
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U14711
List of clone(s)

est1=SSC525E,1,1240
est2=VFK760Z,576,1237
est3=VFF361Z,648,1241
Translated Amino Acid sequence
kylyk*IIYILSVVKMNTNNKNDFKSVYVSSRARDNILKYKYTGCDSSFISIHIMNHFWN
WFVNLFPRSFAPNLITLFGFISIIVSYFVTLYYMDRMNGVAPKWLYLFNALCIFIYQTMD
ACDGKQARRVQASSGLGELFDHGCDAMITYLVMQTFQSSLQVGVNQISFFTTLWIMYVFF
MAQLEQYSTGVMNLGHFGSD*isilndgwsylylflw*tilaqyn*i*kf*kfniii*fy
*l*f*vvlvqfy*ilsqf*kmvmnqf*qtlli*yqfqyc*efqfiganiql*iflklhhi
iswvflefyll**lvn*f*lefvwinyhqfn*lcyh*lllf*ifinlmvnylmkfyspkf
isllyllyifislmml*hh*lkf*tfialh*rnkkqdiiiiiittqin*iiik


Translated Amino Acid sequence (All Frames)
Frame A:
kylyk*IIYILSVVKMNTNNKNDFKSVYVSSRARDNILKYKYTGCDSSFISIHIMNHFWN
WFVNLFPRSFAPNLITLFGFISIIVSYFVTLYYMDRMNGVAPKWLYLFNALCIFIYQTMD
ACDGKQARRVQASSGLGELFDHGCDAMITYLVMQTFQSSLQVGVNQISFFTTLWIMYVFF
MAQLEQYSTGVMNLGHFGSD*isilndgwsylylflw*tilaqyn*i*kf*kfniii*fy
*l*f*vvlvqfy*ilsqf*kmvmnqf*qtlli*yqfqyc*efqfiganiql*iflklhhi
iswvflefyll**lvn*f*lefvwinyhqfn*lcyh*lllf*ifinlmvnylmkfyspkf
isllyllyifislmml*hh*lkf*tfialh*rnkkqdiiiiiittqin*iiik


Frame B:
ntytnk*yiyyq**k*tliikmilkvcmlvqgqeiiy*niniqdviphlflfil*iifgi
gl*iysqdhlhqi*lhyldsfql*lvil*hyiiwie*me*hqngyiylmhfvysfikqwm
hvmvnkhveskhrldwvnylimvvmq*spi**cklfnhlfklvlikyhflqlfgscmyfs
wlnwnntqpal*i*visgptesqfsmmaghiftffygeqfwlntikfesfensi*sfsfi
scnfrwcwynfikyflnfkkw**infnkhy*fstnfnivrsfnllgqifnckyf*ncttl
fhgyfwnficfsnw*idfs*nlyg*iitnsinyvtinccyfkyl*i*w*ii**nfihqsl
flcciyciysfrl*ccnitn*sfrhlllyikeiknkt******llk*ik*l*k


Frame C:
iliqinniytisskneh***k*f*kcvc*fkgkr*yiei*iyrm*fliyfysyyesflel
vckfipkiictkfnyiiwihfnys*lfcniilyg*newsstkmvifi*ctlyihlsnngc
m*w*tst*spsivwig*ti*swl*cndhlfsdanfsiissswc*sniifynsldhvcifh
gsigtilnrryefrsfrvrlnlnsq*wlvislpfsmvnnfgsiqlnlkvlkiqynhlvll
vvilggvgtillntfsilkngnesiltniinlvpisillgvsiywgkystvnifetaphy
fmgifgilfalvtgklilaricmdklspiqlimlpliavilniykfngelfdeilftkvy
ffvvfivyihfaydvvtsltkvldiycftlkk*ktrhnnnnnnysnklnnyk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14711-1 (Contig-U14711-1Q)
/CSM_Contig/Contig-U14711-1Q.Seq.d
(1240 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Conti... 2234 0.0
Contig-U13789-1 (Contig-U13789-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12088-1 (Contig-U12088-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12651-1 (Contig-U12651-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12254-1 (Contig-U12254-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U03115-1 (Contig-U03115-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12865-1 (Contig-U12865-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U12131-1 (Contig-U12131-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U11803-1 (Contig-U11803-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U11701-1 (Contig-U11701-1Q) /CSM_Contig/Conti... 38 0.022

>Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Contig-U14711-1Q.Seq.d
Length = 1240

Score = 2234 bits (1127), Expect = 0.0
Identities = 1127/1127 (100%)
Strand = Plus / Plus


Query: 65 atgattttaaaagtgtgtatgttagttcaagggcaagagataatatattgaaatataaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 atgattttaaaagtgtgtatgttagttcaagggcaagagataatatattgaaatataaat 124


Query: 125 atacaggatgtgattcctcatttatttctattcatattatgaatcatttttggaattggt 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 atacaggatgtgattcctcatttatttctattcatattatgaatcatttttggaattggt 184


Query: 185 ttgtaaatttattcccaagatcatttgcaccaaatttaattacattatttggattcattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ttgtaaatttattcccaagatcatttgcaccaaatttaattacattatttggattcattt 244


Query: 245 caattatagttagttattttgtaacattatattatatggatagaatgaatggagtagcac 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 caattatagttagttattttgtaacattatattatatggatagaatgaatggagtagcac 304


Query: 305 caaaatggttatatttatttaatgcactttgtatattcatttatcaaacaatggatgcat 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 caaaatggttatatttatttaatgcactttgtatattcatttatcaaacaatggatgcat 364


Query: 365 gtgatggtaaacaagcacgtagagtccaagcatcgtctggattgggtgaactatttgatc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 gtgatggtaaacaagcacgtagagtccaagcatcgtctggattgggtgaactatttgatc 424


Query: 425 atggttgtgatgcaatgatcacctatttagtgatgcaaacttttcaatcatctcttcaag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 atggttgtgatgcaatgatcacctatttagtgatgcaaacttttcaatcatctcttcaag 484


Query: 485 ttggtgttaatcaaatatcattttttacaactctttggatcatgtatgtatttttcatgg 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttggtgttaatcaaatatcattttttacaactctttggatcatgtatgtatttttcatgg 544


Query: 545 ctcaattggaacaatactcaaccggcgttatgaatttaggtcatttcgggtccgactgaa 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 ctcaattggaacaatactcaaccggcgttatgaatttaggtcatttcgggtccgactgaa 604


Query: 605 tctcaattctcaatgatggctggtcatatctttacctttttctatggtgaacaattttgg 664
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tctcaattctcaatgatggctggtcatatctttacctttttctatggtgaacaattttgg 664


Query: 665 ctcaatacaattaaatttgaaagttttgaaaattcaatataatcatttagttttattagt 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ctcaatacaattaaatttgaaagttttgaaaattcaatataatcatttagttttattagt 724


Query: 725 tgtaattttaggtggtgttggtacaattttattaaatactttctcaattttaaaaaatgg 784
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 725 tgtaattttaggtggtgttggtacaattttattaaatactttctcaattttaaaaaatgg 784


Query: 785 taatgaatcaattttaacaaacattattaatttagtaccaatttcaatattgttaggagt 844
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 785 taatgaatcaattttaacaaacattattaatttagtaccaatttcaatattgttaggagt 844


Query: 845 ttcaatttattggggcaaatattcaactgtaaatatttttgaaactgcaccacattattt 904
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 845 ttcaatttattggggcaaatattcaactgtaaatatttttgaaactgcaccacattattt 904


Query: 905 catgggtatttttggaattttatttgctttagtaactggtaaattgattttagctagaat 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 905 catgggtatttttggaattttatttgctttagtaactggtaaattgattttagctagaat 964


Query: 965 ttgtatggataaattatcaccaattcaattaattatgttaccattaattgctgttatttt 1024
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 965 ttgtatggataaattatcaccaattcaattaattatgttaccattaattgctgttatttt 1024


Query: 1025 aaatatttataaatttaatggtgaattatttgatgaaattttattcaccaaagtttattt 1084
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1025 aaatatttataaatttaatggtgaattatttgatgaaattttattcaccaaagtttattt 1084


Query: 1085 ctttgttgtatttattgtatatattcatttcgcttatgatgttgtaacatcactaactaa 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1085 ctttgttgtatttattgtatatattcatttcgcttatgatgttgtaacatcactaactaa 1144


Query: 1145 agttttagacatttattgctttacattaaagaaataaaaaacaagac 1191
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1145 agttttagacatttattgctttacattaaagaaataaaaaacaagac 1191


>Contig-U13789-1 (Contig-U13789-1Q) /CSM_Contig/Contig-U13789-1Q.Seq.d
Length = 714

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 729 attttaggtggtgttggtaca 749
|||||||||||||||||||||
Sbjct: 234 attttaggtggtgttggtaca 254


>Contig-U12088-1 (Contig-U12088-1Q) /CSM_Contig/Contig-U12088-1Q.Seq.d
Length = 2665

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 729 attttaggtggtgttggtaca 749
|||||||||||||||||||||
Sbjct: 174 attttaggtggtgttggtaca 194


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,533
Number of Sequences: 6905
Number of extensions: 25533
Number of successful extensions: 2887
Number of sequences better than 10.0: 329
length of query: 1240
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1224
effective length of database: 5,564,391
effective search space: 6810814584
effective search space used: 6810814584
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.29
Homology vs DNA
Query= Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Contig-U14711-1Q.Seq.d
(1240 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 755 0.0 6
(BJ433671) Dictyostelium discoideum cDNA clone:ddv22h15, 3' ... 589 0.0 4
(BJ428352) Dictyostelium discoideum cDNA clone:ddv11j15, 3' ... 672 0.0 2
(AU071790) Dictyostelium discoideum slug cDNA, clone SSC525. 325 2e-84 1
(C84041) Dictyostelium discoideum slug cDNA, clone SSC525. 230 1e-55 1
(BI397338) kt24d04.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 40 5e-05 2
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 2e-04 19
(FC815279) Sr_pAMT7_02j07_T7 S. ratti mixed stage pAMP Stron... 40 2e-04 2
(AC208730) Populus trichocarpa clone JGIACSB1073-H05, comple... 52 0.005 4
(DY887968) CeleSEQ4854 Cunninghamella elegans pBluescript (E... 54 0.013 1
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.023 12
(AC182658) Populus trichocarpa clone Pop1-124E10, complete s... 52 0.030 3
(DY383037) CL__Ea0001H22.r CL__Ea Curcuma longa cDNA clone C... 40 0.041 2
(CZ539777) SRAA-aad27g01.g1 Strongyloides ratti whole genome... 34 0.043 3
(AF267914) Saccharomyces bayanus tRNA-Thr gene, partial sequ... 52 0.051 1
(AC214278) Populus trichocarpa clone ACSB1213-E16, complete ... 52 0.051 1
(AC212804) Populus trichocarpa clone POP033-C13, complete se... 52 0.051 1
(AC148248) Otolemur garnettii clone CH256-113E5, WORKING DRA... 52 0.051 1
(DY392100) CL__Eb0006G18.r CL__Eb Curcuma longa cDNA clone C... 52 0.051 1
(DN881531) naf01b11.y1 Rabbit eye cornea. Unnormalized (naf)... 52 0.051 1
(CF450325) EST686670 normalized cDNA library of onion Allium... 52 0.051 1
(CF440688) EST677033 normalized cDNA library of onion Allium... 52 0.051 1
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.086 8
(AL844509) Plasmodium falciparum chromosome 13. 38 0.11 19
(CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.12 21
(AK100462) Oryza sativa Japonica Group cDNA clone:J023091P12... 36 0.15 2
(CT856727) Oryza sativa Indica Group EST sequence:OSIGCFA226... 36 0.15 2
(AX653152) Sequence 3022 from Patent WO03000898. 36 0.15 2
(CV776074) FGAS070478 Triticum aestivum FGAS: Library 2 Gate... 36 0.15 2
(CA209778) SCJLFL1051G05.g FL1 Saccharum officinarum cDNA cl... 38 0.15 2
(CA006808) HU05M05r HU Hordeum vulgare subsp. vulgare cDNA c... 36 0.16 2
(BJ479087) Hordeum vulgare subsp. spontaneum strain H602 cDN... 36 0.16 2
(CX116394) EI104B19 A normalized whole-life-cycle cDNA libra... 36 0.16 2
(CD809020) LcA03H10c Leymus chinensis leaf cDNA library Leym... 36 0.16 2
(CK036662) 36772siceg_0183.z1 Oryza sativa cv. 93-11 tilleri... 36 0.16 2
(AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.19 13
(EG635414) gmapht_0023b23.pDNRm13r.scf Gadus morhua heart li... 50 0.20 1
(DY887886) CeleSEQ4674 Cunninghamella elegans pBluescript (E... 50 0.20 1
(FC073050) gmnbpcic_0010h07.pDNRm13r Gadus morhua pyloric ca... 50 0.20 1
(AC023884) Homo sapiens chromosome 5 clone RP11-370B10, WORK... 36 0.21 7
(CU463318) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.23 6
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.26 11
(EA771775) Sequence 59 from patent US 7381808. 36 0.30 4
(DD080769) Method and nucleic acids for the differentiation ... 36 0.30 4
(AX659088) Sequence 59 from Patent WO02103041. 36 0.30 4
(AX657814) Sequence 59 from Patent WO02103042. 36 0.30 4
(AX349075) Sequence 1 from Patent WO0202808. 36 0.30 4
(AX347354) Sequence 1 from Patent WO0200705. 36 0.30 4
(AC091789) Homo sapiens BAC clone RP11-496L12 from 7, comple... 36 0.48 7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.51 9
(X95276) Plasmodium falciparum complete gene map of plastid-... 40 0.53 3
(CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 0.53 19
(DT705552) s13dFA47B10RT077_109630 Tall fescue, Festuca arun... 36 0.58 2
(ES224628) MpHnorm_ag6_H14 Myzus persicae, tobacco lineage, ... 36 0.58 2
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.66 9
(AZ543326) ENTFO37TF Entamoeba histolytica Sheared DNA Entam... 36 0.68 3
(EX953476) IF1_14_H06_A067.b1 Iris fulva EST Library IF1 Iri... 44 0.69 2
(EX955574) IF1_53_H06_A067.b1 Iris fulva EST Library IF1 Iri... 44 0.69 2
(AZ667518) ENTHM60TF Entamoeba histolytica Sheared DNA Entam... 36 0.73 3
(CD154253) ML1-0035T-L176-F04-U.B ML1-0035 Schistosoma manso... 42 0.77 2
(BD452831) Diagnosis of Diseases Associated with tumor suppr... 32 0.80 4
(AX251310) Sequence 278 from Patent WO0168912. 32 0.80 4
(BX248578) Mouse DNA sequence from clone RP23-227K23 on chro... 48 0.80 1
(AC107719) Mus musculus clone RP23-187P2, WORKING DRAFT SEQU... 48 0.80 1
(AC201702) Chlorocebus aethiops clone CH252-447M3, WORKING D... 48 0.80 1
(AZ975674) 2M0250O14R Mouse 10kb plasmid UUGC2M library Mus ... 48 0.80 1
(EK086518) 1092961155634 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1
(EK080779) 1092961102334 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1
(AC053488) Homo sapiens chromosome 5 clone RP11-125H10, WORK... 36 0.99 8
(AC013327) Homo sapiens chromosome 1 clone RP11-419P18 map 1... 42 1.1 6
(DQ832717) Phytophthora sojae mitochondrion, complete genome. 34 1.1 5
(AL035476) Plasmodium falciparum MAL4P3. 36 1.1 14
(AL355136) Human DNA sequence from clone RP11-435P18 on chro... 38 1.4 6
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 1.6 12
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 36 1.6 12
(BX005094) Zebrafish DNA sequence from clone CH211-180H17 in... 38 1.6 6
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 1.8 10
(CU138553) Zebrafish DNA sequence from clone DKEY-284I7 in l... 38 1.9 7
(AM477912) Vitis vinifera contig VV78X003048.36, whole genom... 34 1.9 2
(BJ848383) Marchantia polymorpha cDNA clone:lwa2l20, 5' end. 32 2.2 2
(BJ851381) Marchantia polymorpha cDNA clone:lwa38m23, 5' end. 32 2.2 2
(AC211283) Oryza glaberrima clone OG_BBa0063M20, *** SEQUENC... 38 2.2 4
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 2.3 11
(DB380084) Homo sapiens cDNA clone PLACE1011043, 3' end, mRN... 42 2.4 2
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 2.5 15
(AC068543) Homo sapiens chromosome Y clone RP11-354H19, WORK... 36 2.7 5
(CR382398) Plasmodium falciparum chromosome 6, complete sequ... 34 2.9 14
(AC112948) Mus musculus chromosome 8, clone RP23-299I18, com... 46 3.0 7
(BC031435) Mus musculus choline phosphotransferase 1, mRNA (... 46 3.2 1
(BC016251) Mus musculus choline phosphotransferase 1, mRNA (... 46 3.2 1
(AY445814) Mus musculus cholinephosphotransferase mRNA, comp... 46 3.2 1
(AC165357) Mus musculus BAC clone RP23-114G24 from chromosom... 46 3.2 1
(AC164567) Mus musculus BAC clone RP23-64B8 from chromosome ... 46 3.2 1
(AC113977) Mus musculus chromosome 1, clone RP23-161E13, com... 46 3.2 1
(AC196108) Pan troglodytes BAC clone CH251-505O10 from chrom... 46 3.2 1
(AC147652) Pan troglodytes BAC clone RP43-136A3 from chromos... 46 3.2 1
(AC146143) Pan troglodytes BAC clone RP43-37I19 from chromos... 46 3.2 1
(CT573420) M.truncatula DNA sequence from clone MTH2-17L3 on... 46 3.2 1
(AC145165) Medicago truncatula clone mth2-4j24, complete seq... 46 3.2 1
(DL051177) COMPOSITIONS AND METHODS FOR THE THERAPY AND DIAG... 46 3.2 1

>(AC117072) Dictyostelium discoideum chromosome 2 map 3879572-4071762
strain AX4, complete sequence.
Length = 192187

Score = 755 bits (381), Expect(6) = 0.0
Identities = 381/381 (100%)
Strand = Plus / Plus


Query: 213 accaaatttaattacattatttggattcatttcaattatagttagttattttgtaacatt 272
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46605 accaaatttaattacattatttggattcatttcaattatagttagttattttgtaacatt 46664


Query: 273 atattatatggatagaatgaatggagtagcaccaaaatggttatatttatttaatgcact 332
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46665 atattatatggatagaatgaatggagtagcaccaaaatggttatatttatttaatgcact 46724


Query: 333 ttgtatattcatttatcaaacaatggatgcatgtgatggtaaacaagcacgtagagtcca 392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46725 ttgtatattcatttatcaaacaatggatgcatgtgatggtaaacaagcacgtagagtcca 46784


Query: 393 agcatcgtctggattgggtgaactatttgatcatggttgtgatgcaatgatcacctattt 452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46785 agcatcgtctggattgggtgaactatttgatcatggttgtgatgcaatgatcacctattt 46844


Query: 453 agtgatgcaaacttttcaatcatctcttcaagttggtgttaatcaaatatcattttttac 512
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46845 agtgatgcaaacttttcaatcatctcttcaagttggtgttaatcaaatatcattttttac 46904


Query: 513 aactctttggatcatgtatgtatttttcatggctcaattggaacaatactcaaccggcgt 572
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46905 aactctttggatcatgtatgtatttttcatggctcaattggaacaatactcaaccggcgt 46964


Query: 573 tatgaatttaggtcatttcgg 593
|||||||||||||||||||||
Sbjct: 46965 tatgaatttaggtcatttcgg 46985

Score = 456 bits (230), Expect(6) = 0.0
Identities = 230/230 (100%)
Strand = Plus / Plus


Query: 761 tactttctcaattttaaaaaatggtaatgaatcaattttaacaaacattattaatttagt 820
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47233 tactttctcaattttaaaaaatggtaatgaatcaattttaacaaacattattaatttagt 47292


Query: 821 accaatttcaatattgttaggagtttcaatttattggggcaaatattcaactgtaaatat 880
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47293 accaatttcaatattgttaggagtttcaatttattggggcaaatattcaactgtaaatat 47352


Query: 881 ttttgaaactgcaccacattatttcatgggtatttttggaattttatttgctttagtaac 940
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47353 ttttgaaactgcaccacattatttcatgggtatttttggaattttatttgctttagtaac 47412


Query: 941 tggtaaattgattttagctagaatttgtatggataaattatcaccaattc 990
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47413 tggtaaattgattttagctagaatttgtatggataaattatcaccaattc 47462

Score = 262 bits (132), Expect(6) = 0.0
Identities = 135/136 (99%)
Strand = Plus / Plus


Query: 77 gtgtgtatgttagttcaagggcaagagataatatattgaaatataaatatacaggatgtg 136
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 46363 gtgtgtatgttagttcaagggcaagagataatatattgaaatataaatatacaggatggg 46422


Query: 137 attcctcatttatttctattcatattatgaatcatttttggaattggtttgtaaatttat 196
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46423 attcctcatttatttctattcatattatgaatcatttttggaattggtttgtaaatttat 46482


Query: 197 tcccaagatcatttgc 212
||||||||||||||||
Sbjct: 46483 tcccaagatcatttgc 46498

Score = 230 bits (116), Expect(6) = 0.0
Identities = 116/116 (100%)
Strand = Plus / Plus


Query: 1055 tgatgaaattttattcaccaaagtttatttctttgttgtatttattgtatatattcattt 1114
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47635 tgatgaaattttattcaccaaagtttatttctttgttgtatttattgtatatattcattt 47694


Query: 1115 cgcttatgatgttgtaacatcactaactaaagttttagacatttattgctttacat 1170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47695 cgcttatgatgttgtaacatcactaactaaagttttagacatttattgctttacat 47750

Score = 196 bits (99), Expect(6) = 0.0
Identities = 102/103 (99%)
Strand = Plus / Plus


Query: 593 ggtccgactgaatctcaattctcaatgatggctggtcatatctttacctttttctatggt 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 46984 ggtccgactgaatctcaattctcaatgatggctggtcatatctttacctttttctatggt 47043


Query: 653 gaacaattttggctcaatacaattaaatttgaaagttttgaaa 695
|||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 47044 gaacaattttggttcaatacaattaaatttgaaagttttgaaa 47086

Score = 133 bits (67), Expect(6) = 0.0
Identities = 67/67 (100%)
Strand = Plus / Plus


Query: 694 aaattcaatataatcatttagttttattagttgtaattttaggtggtgttggtacaattt 753
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 47084 aaattcaatataatcatttagttttattagttgtaattttaggtggtgttggtacaattt 47143


Query: 754 tattaaa 760
|||||||
Sbjct: 47144 tattaaa 47150

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,460,441,132
Number of extensions: 94884332
Number of successful extensions: 8292473
Number of sequences better than 10.0: 293
Length of query: 1240
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1216
Effective length of database: 97,308,875,965
Effective search space: 118327593173440
Effective search space used: 118327593173440
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.12
Homology vs Protein
Query= Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Contig-U14711-1Q.Seq.d
(1240 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC117072_20(AC117072|pid:none) Dictyostelium discoideum chromoso... 375 0.0
AF019108_1(AF019108|pid:none) Dictyostelium discoideum LipB (lip... 148 5e-34
(Q550W1) RecName: Full=Uncharacterized CDP-alcohol phosphatidylt... 145 4e-33
AK068133_1(AK068133|pid:none) Oryza sativa Japonica Group cDNA c... 134 4e-33
BT052676_1(BT052676|pid:none) Medicago truncatula clone MTYFD_FE... 129 2e-30
T06384(T06384) probable ethanolaminephosphotransferase (EC 2.7.8... 128 4e-30
CR382129_422(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 132 8e-30
AF446089_1(AF446089|pid:none) Brassica rapa subsp. pekinensis am... 127 8e-30
(Q54XM0) RecName: Full=Uncharacterized CDP-alcohol phosphatidylt... 133 1e-29
AE016820_713(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 133 2e-29
EU972853_1(EU972853|pid:none) Zea mays clone 389079 ethanolamine... 133 2e-29
T14412(T14412) ethanolaminephosphotransferase homolog - turnip ... 125 2e-29
AP008212_563(AP008212|pid:none) Oryza sativa (japonica cultivar-... 124 2e-29
(P17898) RecName: Full=Cholinephosphotransferase 1; EC=... 128 4e-28
AF183933_1(AF183933|pid:none) Brassica rapa aminoalcoholphosphot... 122 4e-28
AE013599_1803(AE013599|pid:none) Drosophila melanogaster chromos... 108 5e-28
AE013599_1804(AE013599|pid:none) Drosophila melanogaster chromos... 108 6e-28
U96439_1(U96439|pid:none) Pimpinella brachycarpa aminoalcoholpho... 115 7e-28
CR380957_407(CR380957|pid:none) Candida glabrata strain CBS138 c... 127 1e-27
AL033396_1(AL033396|pid:none) C.albicans cosmid Ca35A5. &T18217... 126 1e-27
AP006852_250(AP006852|pid:none) Candida albicans genomic DNA, ch... 126 1e-27
S63075(S63075;A35022;S55153;S59258) diacylglycerol cholinephosph... 125 3e-27
FN317405_1(FN317405|pid:none) Schistosoma japonicum isolate Anhu... 124 5e-27
(P22140) RecName: Full=Choline/ethanolaminephosphotransferase 1;... 123 1e-26
AM270250_6(AM270250|pid:none) Aspergillus niger contig An11c0330... 123 1e-26
(Q7ZYQ3) RecName: Full=Choline/ethanolaminephosphotransferase 1;... 122 2e-26
BC151968_1(BC151968|pid:none) Danio rerio zgc:171762, mRNA (cDNA... 122 2e-26
CU633899_636(CU633899|pid:none) Podospora anserina genomic DNA c... 122 2e-26
(Q7ZW02) RecName: Full=Cholinephosphotransferase 1; EC=... 108 2e-26
CR382134_270(CR382134|pid:none) Debaryomyces hansenii strain CBS... 120 1e-25
BT044797_1(BT044797|pid:none) Salmo salar clone ssal-rgf-504-039... 120 1e-25
AY375472_1(AY375472|pid:none) Chlamydomonas reinhardtii ethanola... 118 4e-25
AE014134_1401(AE014134|pid:none) Drosophila melanogaster chromos... 117 9e-25
AJ719721_1(AJ719721|pid:none) Gallus gallus mRNA for hypothetica... 117 1e-24
BC076643_1(BC076643|pid:none) Xenopus laevis selenoprotein I, mR... 115 2e-24
AY069783_1(AY069783|pid:none) Drosophila melanogaster SD02518 fu... 115 3e-24
AE014134_3225(AE014134|pid:none) Drosophila melanogaster chromos... 115 3e-24
CR382126_1038(CR382126|pid:none) Kluyveromyces lactis strain NRR... 114 4e-24
AB051511_1(AB051511|pid:none) Homo sapiens mRNA for KIAA1724 pro... 113 1e-23
AL033512_1(AL033512|pid:none) Caenorhabditis elegans YAC Y49A3A,... 113 2e-23
AK040745_1(AK040745|pid:none) Mus musculus adult male aorta and ... 112 2e-23
BC106097_1(BC106097|pid:none) Mus musculus DNA segment, Chr 5, W... 112 2e-23
CR380958_562(CR380958|pid:none) Candida glabrata strain CBS138 c... 112 3e-23
AJ720153_1(AJ720153|pid:none) Gallus gallus mRNA for hypothetica... 111 5e-23
(Q66H21) RecName: Full=Cholinephosphotransferase 1; EC=... 111 5e-23
(Q5ZKD1) RecName: Full=Choline/ethanolaminephosphotransferase 1;... 111 5e-23
AF039712_5(AF039712|pid:none) Caenorhabditis elegans cosmid F54D... 111 6e-23
(O13901) RecName: Full=Uncharacterized CDP-alcohol phosphatidylt... 111 6e-23
BC021753_1(BC021753|pid:none) Mus musculus choline/ethanolaminep... 110 8e-23
BC016251_1(BC016251|pid:none) Mus musculus choline phosphotransf... 110 8e-23
AY445814_1(AY445814|pid:none) Mus musculus cholinephosphotransfe... 110 8e-23
(Q8C025) RecName: Full=Cholinephosphotransferase 1; EC=... 110 1e-22
BC031435_1(BC031435|pid:none) Mus musculus choline phosphotransf... 110 1e-22
AF466199_2(AF466199|pid:none) Sorghum bicolor putative receptor ... 110 1e-22
CR926492_1(CR926492|pid:none) Pongo abelii mRNA; cDNA DKFZp469K0... 110 1e-22
(Q8BGS7) RecName: Full=Choline/ethanolaminephosphotransferase 1;... 109 2e-22
(Q9Y6K0) RecName: Full=Choline/ethanolaminephosphotransferase 1;... 109 2e-22
AK023381_1(AK023381|pid:none) Homo sapiens cDNA FLJ13319 fis, cl... 109 2e-22
AF138862_1(AF138862|pid:none) Homo sapiens clone FLB4244 mRNA se... 109 2e-22
AF195623_1(AF195623|pid:none) Homo sapiens cholinephosphotransfe... 108 3e-22
AF195624_1(AF195624|pid:none) Homo sapiens cholinephosphotransfe... 108 3e-22
BT031002_1(BT031002|pid:none) Drosophila melanogaster LP04953 fu... 108 4e-22
AC115584_15(AC115584|pid:none) Dictyostelium discoideum chromoso... 108 5e-22
T21271(T21271;T25145)hypothetical protein F22E10.5 - Caenorhabdi... 108 5e-22
Z50797_2(Z50797|pid:none) Caenorhabditis elegans Cosmid T22H6, c... 108 5e-22
Z50797_1(Z50797|pid:none) Caenorhabditis elegans Cosmid T22H6, c... 108 5e-22
(Q1LZE6) RecName: Full=Cholinephosphotransferase 1; EC=... 107 9e-22
BC161770_1(BC161770|pid:none) Xenopus tropicalis hypothetical pr... 105 3e-21
FN357339_28(FN357339|pid:none) Schistosoma mansoni genome sequen... 105 4e-21
(Q5ZHQ5) RecName: Full=Cholinephosphotransferase 1; EC=... 103 1e-20
CU928166_223(CU928166|pid:none) Kluyveromyces thermotolerans str... 99 1e-19
BT050077_1(BT050077|pid:none) Salmo salar clone ssal-evd-524-174... 100 1e-19
AK014530_1(AK014530|pid:none) Mus musculus 0 day neonate skin cD... 99 4e-19
CS072360_1(CS072360|pid:none) Sequence 108 from Patent WO2001042... 98 7e-19
CP001323_475(CP001323|pid:none) Micromonas sp. RCC299 chromosome... 97 9e-19
AL833102_1(AL833102|pid:none) Homo sapiens mRNA; cDNA DKFZp313G0... 97 2e-18
CR954203_553(CR954203|pid:none) Ostreococcus tauri strain OTTH05... 97 2e-18
AM910993_210(AM910993|pid:none) Plasmodium knowlesi strain H chr... 96 3e-18
CP001160_99(CP001160|pid:none) Thalassiosira pseudonana CCMP1335... 95 5e-18
AP004084_14(AP004084|pid:none) Oryza sativa Japonica Group genom... 83 9e-18
AL844505_278(AL844505|pid:none) Plasmodium falciparum 3D7 chromo... 93 2e-17
BC071114_1(BC071114|pid:none) Xenopus laevis MGC81337 protein, m... 92 5e-17
FN313698_1(FN313698|pid:none) Schistosoma japonicum isolate Anhu... 87 1e-15
CP000583_551(CP000583|pid:none) Ostreococcus lucimarinus CCE9901... 87 2e-15
AY816031_1(AY816031|pid:none) Schistosoma japonicum clone SJCHGC... 86 4e-15
AF047431_1(AF047431|pid:none) Homo sapiens AAPT1-like protein mR... 85 5e-15
CR940347_50(CR940347|pid:none) Theileria annulata strain Ankara ... 84 1e-14
T32738(T32738)hypothetical protein F54D7.2 - Caenorhabditis eleg... 83 2e-14
AY179560_1(AY179560|pid:none) Brassica napus aminoalcoholphospho... 82 5e-14
CP000587_260(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 81 9e-14
CU928179_249(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 76 4e-13
AY812805_1(AY812805|pid:none) Schistosoma japonicum SJCHGC00742 ... 78 6e-13
DQ399499_1(DQ399499|pid:none) Ictalurus punctatus clone SFFC12R ... 78 7e-13
(Q8T2Q6) RecName: Full=Uncharacterized CDP-alcohol phosphatidylt... 75 5e-12
AX970899_1(AX970899|pid:none) Sequence 1702 from Patent EP1104808. 63 2e-08
AE000520_663(AE000520|pid:none) Treponema pallidum subsp. pallid... 59 4e-07
AY530952_5(AY530952|pid:none) Zea mays unknown (Z576C20.2), puta... 53 3e-05
AC116314_1(AC116314|pid:none) Trypanosoma cruzi strain CL Brener... 48 6e-04
CP000927_1673(CP000927|pid:none) Caulobacter sp. K31, complete g... 44 0.016
AM494955_89(AM494955|pid:none) Leishmania braziliensis chromosom... 43 0.020
BT056298_1(BT056298|pid:none) Drosophila melanogaster MIP02933 f... 33 0.075
CP000450_1066(CP000450|pid:none) Nitrosomonas eutropha C91, comp... 40 0.23
AE005673_1155(AE005673|pid:none) Caulobacter crescentus CB15, co... 40 0.23
CP000158_1557(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 39 0.30
EU686628_6(EU686628|pid:none) Uncultured marine group III euryar... 39 0.39
AY166717_1(AY166717|pid:none) Homo sapiens cholinephosphotransfe... 38 0.66
CP001365_1328(CP001365|pid:none) Halorubrum lacusprofundi ATCC 4... 38 0.66
AP008981_1344(AP008981|pid:none) Orientia tsutsugamushi str. Ike... 38 0.86
AY714819_32(AY714819|pid:none) Uncultured archaeon GZfos13E1 clo... 38 0.86
AY289755_1(AY289755|pid:none) Cavia porcellus cholinephosphotran... 37 1.1
CP000448_986(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 37 1.1
AM494963_241(AM494963|pid:none) Leishmania braziliensis chromoso... 37 1.5
AY280610_1(AY280610|pid:none) Homo sapiens cell-line MCF-7 choli... 37 1.9
AK093067_1(AK093067|pid:none) Homo sapiens cDNA FLJ35748 fis, cl... 37 1.9
AY294627_1(AY294627|pid:none) Homo sapiens cell-line MCF-12F cho... 37 1.9
AF111803_1(AF111803|pid:none) Homo sapiens MSTP022 (MST022) mRNA... 37 1.9
AY166718_1(AY166718|pid:none) Homo sapiens cholinephosphotransfe... 37 1.9
AM889285_630(AM889285|pid:none) Gluconacetobacter diazotrophicus... 37 1.9
CP000521_3315(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 37 1.9
CP000539_2941(CP000539|pid:none) Acidovorax sp. JS42, complete g... 36 3.3
CP000488_403(CP000488|pid:none) Candidatus Ruthia magnifica str.... 36 3.3
CR931699_10(CR931699|pid:none) Streptococcus pneumoniae strain E... 35 4.3
AB065374_11(AB065374|pid:none) Venerupis philippinarum mitochond... 35 5.5
AM180088_2436(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 35 5.6
CP000082_564(CP000082|pid:none) Psychrobacter arcticus 273-4, co... 35 5.6
AY750070_1(AY750070|pid:none) Drosophila yunnanensis NADH dehydr... 35 7.3
CP000488_141(CP000488|pid:none) Candidatus Ruthia magnifica str.... 35 7.3
CP001047_450(CP001047|pid:none) Mycoplasma arthritidis 158L3-1, ... 35 7.3
CP000712_1746(CP000712|pid:none) Pseudomonas putida F1, complete... 34 9.5
CR543861_2838(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 34 9.5
CP000713_640(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 34 9.5

>AC117072_20(AC117072|pid:none) Dictyostelium discoideum chromosome
2 map 3879572-4071762 strain AX4, complete sequence.
Length = 381

Score = 375 bits (964), Expect(3) = 0.0
Identities = 181/183 (98%), Positives = 181/183 (98%)
Frame = +1

Query: 46 MNTNNKNDFKSVYVSSRARDNILKYKYTGCDSSFISIHIMNHFWNWFVNLFPRSFAPNLI 225
M TNNKNDFKSVYVSSRARDNILKYKYTG DSSFISIHIMNHFWNWFVNLFPRSFAPNLI
Sbjct: 1 MTTNNKNDFKSVYVSSRARDNILKYKYTGWDSSFISIHIMNHFWNWFVNLFPRSFAPNLI 60

Query: 226 TLFGFISIIVSYFVTLYYMDRMNGVAPKWLYLFNALCIFIYQTMDACDGKQARRVQASSG 405
TLFGFISIIVSYFVTLYYMDRMNGVAPKWLYLFNALCIFIYQTMDACDGKQARRVQASSG
Sbjct: 61 TLFGFISIIVSYFVTLYYMDRMNGVAPKWLYLFNALCIFIYQTMDACDGKQARRVQASSG 120

Query: 406 LGELFDHGCDAMITYLVMQTFQSSLQVGVNQISFFTTLWIMYVFFMAQLEQYSTGVMNLG 585
LGELFDHGCDAMITYLVMQTFQSSLQVGVNQISFFTTLWIMYVFFMAQLEQYSTGVMNLG
Sbjct: 121 LGELFDHGCDAMITYLVMQTFQSSLQVGVNQISFFTTLWIMYVFFMAQLEQYSTGVMNLG 180

Query: 586 HFG 594
HFG
Sbjct: 181 HFG 183

Score = 251 bits (641), Expect(3) = 0.0
Identities = 132/170 (77%), Positives = 135/170 (79%)
Frame = +3

Query: 675 LNLKVLKIQYNHXXXXXXXXXXXXXXXXNTFSILKNGNESILTNIINLVPISILLGVSIY 854
+ + +IQYNH NTFSILKNGNESILTNIINLVPISILLGVSIY
Sbjct: 210 IKFESFEIQYNHLVLLVVILGGVGTILLNTFSILKNGNESILTNIINLVPISILLGVSIY 269

Query: 855 WGKYSTVNIFETAPHYFMGIFGILFALVTGKLILARICMDKLSPIQLIMLPLIAVILNIY 1034
WGKYSTVNIFETAPHYFMGIFGILFALVTGKLILARICMDKLSPIQLIMLPLIAVILNIY
Sbjct: 270 WGKYSTVNIFETAPHYFMGIFGILFALVTGKLILARICMDKLSPIQLIMLPLIAVILNIY 329

Query: 1035 KFNGELFDEILFTKXXXXXXXXXXXXXAYDVVTSLTKVLDIYCFTLKK*K 1184
KFNGELFDEILFTK AYDVVTSLTKVLDIYCFTLK K
Sbjct: 330 KFNGELFDEILFTKVYFFVVFIVYIHFAYDVVTSLTKVLDIYCFTLKNKK 379

Score = 65.1 bits (157), Expect(3) = 0.0
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +2

Query: 593 GPTESQFSMMAGHIFTFFYGEQFWLNTIK 679
GPTESQFSMMAGHIFTFFYGEQFW NTIK
Sbjct: 183 GPTESQFSMMAGHIFTFFYGEQFWFNTIK 211

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,735,918,559
Number of extensions: 32877870
Number of successful extensions: 74725
Number of sequences better than 10.0: 131
Number of HSP's gapped: 74621
Number of HSP's successfully gapped: 179
Length of query: 413
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 282
Effective length of database: 627,191,635
Effective search space: 176868041070
Effective search space used: 176868041070
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.42 gvh: 0.31 alm: 0.26 top: 0.50 tms: 0.07 mit: 0.26 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 1.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 1.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 0.00

24.0 %: mitochondrial
24.0 %: nuclear
20.0 %: cytoplasmic
20.0 %: endoplasmic reticulum
4.0 %: vacuolar
4.0 %: plasma membrane
4.0 %: vesicles of secretory system

>> prediction for Contig-U14711-1 is mit

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 2
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0