Contig-U14711-1 |
Contig ID |
Contig-U14711-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1240 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
734643 |
End point |
735853 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
3 |
Number of EST |
3 |
Link to clone list |
U14711 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.29 |
Homology vs DNA |
Query= Contig-U14711-1 (Contig-U14711-1Q) /CSM_Contig/Contig-U14711-1Q.Seq.d (1240 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 755 0.0 6 (BJ433671) Dictyostelium discoideum cDNA clone:ddv22h15, 3' ... 589 0.0 4 (BJ428352) Dictyostelium discoideum cDNA clone:ddv11j15, 3' ... 672 0.0 2 (AU071790) Dictyostelium discoideum slug cDNA, clone SSC525. 325 2e-84 1 (C84041) Dictyostelium discoideum slug cDNA, clone SSC525. 230 1e-55 1 (BI397338) kt24d04.y3 Strongyloides ratti L1 pAMP1 v3 Chiape... 40 5e-05 2 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 32 2e-04 19 (FC815279) Sr_pAMT7_02j07_T7 S. ratti mixed stage pAMP Stron... 40 2e-04 2 (AC208730) Populus trichocarpa clone JGIACSB1073-H05, comple... 52 0.005 4 (DY887968) CeleSEQ4854 Cunninghamella elegans pBluescript (E... 54 0.013 1 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 34 0.023 12 (AC182658) Populus trichocarpa clone Pop1-124E10, complete s... 52 0.030 3 (DY383037) CL__Ea0001H22.r CL__Ea Curcuma longa cDNA clone C... 40 0.041 2 (CZ539777) SRAA-aad27g01.g1 Strongyloides ratti whole genome... 34 0.043 3 (AF267914) Saccharomyces bayanus tRNA-Thr gene, partial sequ... 52 0.051 1 (AC214278) Populus trichocarpa clone ACSB1213-E16, complete ... 52 0.051 1 (AC212804) Populus trichocarpa clone POP033-C13, complete se... 52 0.051 1 (AC148248) Otolemur garnettii clone CH256-113E5, WORKING DRA... 52 0.051 1 (DY392100) CL__Eb0006G18.r CL__Eb Curcuma longa cDNA clone C... 52 0.051 1 (DN881531) naf01b11.y1 Rabbit eye cornea. Unnormalized (naf)... 52 0.051 1 (CF450325) EST686670 normalized cDNA library of onion Allium... 52 0.051 1 (CF440688) EST677033 normalized cDNA library of onion Allium... 52 0.051 1 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 40 0.086 8 (AL844509) Plasmodium falciparum chromosome 13. 38 0.11 19 (CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.12 21 (AK100462) Oryza sativa Japonica Group cDNA clone:J023091P12... 36 0.15 2 (CT856727) Oryza sativa Indica Group EST sequence:OSIGCFA226... 36 0.15 2 (AX653152) Sequence 3022 from Patent WO03000898. 36 0.15 2 (CV776074) FGAS070478 Triticum aestivum FGAS: Library 2 Gate... 36 0.15 2 (CA209778) SCJLFL1051G05.g FL1 Saccharum officinarum cDNA cl... 38 0.15 2 (CA006808) HU05M05r HU Hordeum vulgare subsp. vulgare cDNA c... 36 0.16 2 (BJ479087) Hordeum vulgare subsp. spontaneum strain H602 cDN... 36 0.16 2 (CX116394) EI104B19 A normalized whole-life-cycle cDNA libra... 36 0.16 2 (CD809020) LcA03H10c Leymus chinensis leaf cDNA library Leym... 36 0.16 2 (CK036662) 36772siceg_0183.z1 Oryza sativa cv. 93-11 tilleri... 36 0.16 2 (AE014831) Plasmodium falciparum 3D7 chromosome 10 section 3... 34 0.19 13 (EG635414) gmapht_0023b23.pDNRm13r.scf Gadus morhua heart li... 50 0.20 1 (DY887886) CeleSEQ4674 Cunninghamella elegans pBluescript (E... 50 0.20 1 (FC073050) gmnbpcic_0010h07.pDNRm13r Gadus morhua pyloric ca... 50 0.20 1 (AC023884) Homo sapiens chromosome 5 clone RP11-370B10, WORK... 36 0.21 7 (CU463318) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.23 6 (AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.26 11 (EA771775) Sequence 59 from patent US 7381808. 36 0.30 4 (DD080769) Method and nucleic acids for the differentiation ... 36 0.30 4 (AX659088) Sequence 59 from Patent WO02103041. 36 0.30 4 (AX657814) Sequence 59 from Patent WO02103042. 36 0.30 4 (AX349075) Sequence 1 from Patent WO0202808. 36 0.30 4 (AX347354) Sequence 1 from Patent WO0200705. 36 0.30 4 (AC091789) Homo sapiens BAC clone RP11-496L12 from 7, comple... 36 0.48 7 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.51 9 (X95276) Plasmodium falciparum complete gene map of plastid-... 40 0.53 3 (CP000939) Clostridium botulinum B1 str. Okra, complete genome. 36 0.53 19 (DT705552) s13dFA47B10RT077_109630 Tall fescue, Festuca arun... 36 0.58 2 (ES224628) MpHnorm_ag6_H14 Myzus persicae, tobacco lineage, ... 36 0.58 2 (AP009180) Candidatus Carsonella ruddii PV DNA, complete gen... 36 0.66 9 (AZ543326) ENTFO37TF Entamoeba histolytica Sheared DNA Entam... 36 0.68 3 (EX953476) IF1_14_H06_A067.b1 Iris fulva EST Library IF1 Iri... 44 0.69 2 (EX955574) IF1_53_H06_A067.b1 Iris fulva EST Library IF1 Iri... 44 0.69 2 (AZ667518) ENTHM60TF Entamoeba histolytica Sheared DNA Entam... 36 0.73 3 (CD154253) ML1-0035T-L176-F04-U.B ML1-0035 Schistosoma manso... 42 0.77 2 (BD452831) Diagnosis of Diseases Associated with tumor suppr... 32 0.80 4 (AX251310) Sequence 278 from Patent WO0168912. 32 0.80 4 (BX248578) Mouse DNA sequence from clone RP23-227K23 on chro... 48 0.80 1 (AC107719) Mus musculus clone RP23-187P2, WORKING DRAFT SEQU... 48 0.80 1 (AC201702) Chlorocebus aethiops clone CH252-447M3, WORKING D... 48 0.80 1 (AZ975674) 2M0250O14R Mouse 10kb plasmid UUGC2M library Mus ... 48 0.80 1 (EK086518) 1092961155634 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1 (EK080779) 1092961102334 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.80 1 (AC053488) Homo sapiens chromosome 5 clone RP11-125H10, WORK... 36 0.99 8 (AC013327) Homo sapiens chromosome 1 clone RP11-419P18 map 1... 42 1.1 6 (DQ832717) Phytophthora sojae mitochondrion, complete genome. 34 1.1 5 (AL035476) Plasmodium falciparum MAL4P3. 36 1.1 14 (AL355136) Human DNA sequence from clone RP11-435P18 on chro... 38 1.4 6 (AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 1.6 12 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 36 1.6 12 (BX005094) Zebrafish DNA sequence from clone CH211-180H17 in... 38 1.6 6 (CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl... 32 1.8 10 (CU138553) Zebrafish DNA sequence from clone DKEY-284I7 in l... 38 1.9 7 (AM477912) Vitis vinifera contig VV78X003048.36, whole genom... 34 1.9 2 (BJ848383) Marchantia polymorpha cDNA clone:lwa2l20, 5' end. 32 2.2 2 (BJ851381) Marchantia polymorpha cDNA clone:lwa38m23, 5' end. 32 2.2 2 (AC211283) Oryza glaberrima clone OG_BBa0063M20, *** SEQUENC... 38 2.2 4 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 40 2.3 11 (DB380084) Homo sapiens cDNA clone PLACE1011043, 3' end, mRN... 42 2.4 2 (AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)... 38 2.5 15 (AC068543) Homo sapiens chromosome Y clone RP11-354H19, WORK... 36 2.7 5 (CR382398) Plasmodium falciparum chromosome 6, complete sequ... 34 2.9 14 (AC112948) Mus musculus chromosome 8, clone RP23-299I18, com... 46 3.0 7 (BC031435) Mus musculus choline phosphotransferase 1, mRNA (... 46 3.2 1 (BC016251) Mus musculus choline phosphotransferase 1, mRNA (... 46 3.2 1 (AY445814) Mus musculus cholinephosphotransferase mRNA, comp... 46 3.2 1 (AC165357) Mus musculus BAC clone RP23-114G24 from chromosom... 46 3.2 1 (AC164567) Mus musculus BAC clone RP23-64B8 from chromosome ... 46 3.2 1 (AC113977) Mus musculus chromosome 1, clone RP23-161E13, com... 46 3.2 1 (AC196108) Pan troglodytes BAC clone CH251-505O10 from chrom... 46 3.2 1 (AC147652) Pan troglodytes BAC clone RP43-136A3 from chromos... 46 3.2 1 (AC146143) Pan troglodytes BAC clone RP43-37I19 from chromos... 46 3.2 1 (CT573420) M.truncatula DNA sequence from clone MTH2-17L3 on... 46 3.2 1 (AC145165) Medicago truncatula clone mth2-4j24, complete seq... 46 3.2 1 (DL051177) COMPOSITIONS AND METHODS FOR THE THERAPY AND DIAG... 46 3.2 1
>(AC117072) Dictyostelium discoideum chromosome 2 map 3879572-4071762 strain AX4, complete sequence. Length = 192187
Score = 755 bits (381), Expect(6) = 0.0 Identities = 381/381 (100%) Strand = Plus / Plus
Query: 213 accaaatttaattacattatttggattcatttcaattatagttagttattttgtaacatt 272 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46605 accaaatttaattacattatttggattcatttcaattatagttagttattttgtaacatt 46664
Query: 273 atattatatggatagaatgaatggagtagcaccaaaatggttatatttatttaatgcact 332 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46665 atattatatggatagaatgaatggagtagcaccaaaatggttatatttatttaatgcact 46724
Query: 333 ttgtatattcatttatcaaacaatggatgcatgtgatggtaaacaagcacgtagagtcca 392 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46725 ttgtatattcatttatcaaacaatggatgcatgtgatggtaaacaagcacgtagagtcca 46784
Query: 393 agcatcgtctggattgggtgaactatttgatcatggttgtgatgcaatgatcacctattt 452 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46785 agcatcgtctggattgggtgaactatttgatcatggttgtgatgcaatgatcacctattt 46844
Query: 453 agtgatgcaaacttttcaatcatctcttcaagttggtgttaatcaaatatcattttttac 512 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46845 agtgatgcaaacttttcaatcatctcttcaagttggtgttaatcaaatatcattttttac 46904
Query: 513 aactctttggatcatgtatgtatttttcatggctcaattggaacaatactcaaccggcgt 572 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46905 aactctttggatcatgtatgtatttttcatggctcaattggaacaatactcaaccggcgt 46964
Query: 573 tatgaatttaggtcatttcgg 593 ||||||||||||||||||||| Sbjct: 46965 tatgaatttaggtcatttcgg 46985
Score = 456 bits (230), Expect(6) = 0.0 Identities = 230/230 (100%) Strand = Plus / Plus
Query: 761 tactttctcaattttaaaaaatggtaatgaatcaattttaacaaacattattaatttagt 820 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47233 tactttctcaattttaaaaaatggtaatgaatcaattttaacaaacattattaatttagt 47292
Query: 821 accaatttcaatattgttaggagtttcaatttattggggcaaatattcaactgtaaatat 880 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47293 accaatttcaatattgttaggagtttcaatttattggggcaaatattcaactgtaaatat 47352
Query: 881 ttttgaaactgcaccacattatttcatgggtatttttggaattttatttgctttagtaac 940 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47353 ttttgaaactgcaccacattatttcatgggtatttttggaattttatttgctttagtaac 47412
Query: 941 tggtaaattgattttagctagaatttgtatggataaattatcaccaattc 990 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47413 tggtaaattgattttagctagaatttgtatggataaattatcaccaattc 47462
Score = 262 bits (132), Expect(6) = 0.0 Identities = 135/136 (99%) Strand = Plus / Plus
Query: 77 gtgtgtatgttagttcaagggcaagagataatatattgaaatataaatatacaggatgtg 136 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct: 46363 gtgtgtatgttagttcaagggcaagagataatatattgaaatataaatatacaggatggg 46422
Query: 137 attcctcatttatttctattcatattatgaatcatttttggaattggtttgtaaatttat 196 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46423 attcctcatttatttctattcatattatgaatcatttttggaattggtttgtaaatttat 46482
Query: 197 tcccaagatcatttgc 212 |||||||||||||||| Sbjct: 46483 tcccaagatcatttgc 46498
Score = 230 bits (116), Expect(6) = 0.0 Identities = 116/116 (100%) Strand = Plus / Plus
Query: 1055 tgatgaaattttattcaccaaagtttatttctttgttgtatttattgtatatattcattt 1114 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47635 tgatgaaattttattcaccaaagtttatttctttgttgtatttattgtatatattcattt 47694
Query: 1115 cgcttatgatgttgtaacatcactaactaaagttttagacatttattgctttacat 1170 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47695 cgcttatgatgttgtaacatcactaactaaagttttagacatttattgctttacat 47750
Score = 196 bits (99), Expect(6) = 0.0 Identities = 102/103 (99%) Strand = Plus / Plus
Query: 593 ggtccgactgaatctcaattctcaatgatggctggtcatatctttacctttttctatggt 652 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 46984 ggtccgactgaatctcaattctcaatgatggctggtcatatctttacctttttctatggt 47043
Query: 653 gaacaattttggctcaatacaattaaatttgaaagttttgaaa 695 |||||||||||| |||||||||||||||||||||||||||||| Sbjct: 47044 gaacaattttggttcaatacaattaaatttgaaagttttgaaa 47086
Score = 133 bits (67), Expect(6) = 0.0 Identities = 67/67 (100%) Strand = Plus / Plus
Query: 694 aaattcaatataatcatttagttttattagttgtaattttaggtggtgttggtacaattt 753 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 47084 aaattcaatataatcatttagttttattagttgtaattttaggtggtgttggtacaattt 47143
Query: 754 tattaaa 760 ||||||| Sbjct: 47144 tattaaa 47150
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,460,441,132 Number of extensions: 94884332 Number of successful extensions: 8292473 Number of sequences better than 10.0: 293 Length of query: 1240 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1216 Effective length of database: 97,308,875,965 Effective search space: 118327593173440 Effective search space used: 118327593173440 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.12 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
1 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |