NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14708-1
Contig ID Contig-U14708-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Contig-U14708-1Q.Seq.d
CATATAAAAAAAAATAAAAAAATGAATAAAACTAATCAATTAATTAATAT
TTGTATTTTGGTCACATTATTTTTAATTGGAAGTTCATCAGCATTAACAT
TACAAGTTGAACCAAAATCACAAGAATGTTTTTATAATTTCATAGAGTCT
GGAAAGACTTCTTTACTCCTCTATCAAGTTATTAGAGGTGGCTTATTAGA
TATTAATGTTAAGCTCACAGATCCAAAAGGAAATACAATTTTTGAACGTC
TTCATTTTGATACACAAATGAAAGGTAAACAAAGTTTTACCGCTGGTGAA
TCAGGTGCATACAAAGTTTGTTTCAATAATGAAATGTCAAGATTTACCGC
CAAAGTTGTCACATTTACATGGGCTTCTGAAGAAGAAGGTGTCAAAGAAG
TTGCCAAAGGTGATTCAATCACTCCAATGGATCAATCAGTTCAAAAGATT
GAAAGAGTTCTTCAATCAGTTATTCATGAACAAAAGAAATTAAGATATAG
AGAACAAGCAAACAGAGATACCTCTGAAAGTACTAATGCACGTGTTGTAT
GGTGGACAATCGCTGAGGTTATTGTATTAGTTGTAATGGGTGTTGGTCAA
ATTTGGTATTTAAGAAAATGGTTTGATAATAAATCAACAGGAAGAGTTTA
AAATAATTTTTTAAAAAAAAAGAAATAAAAAAAAAAATAAATAAACAATT
ATAATAAATAAAATAATTTTTTATAAA
Gap no gap
Contig length 727
Chromosome number (1..6, M) 6
Chromosome length 3595308
Start point 3009008
End point 3009739
Strand (PLUS/MINUS) PLUS
Number of clones 9
Number of EST 9
Link to clone list U14708
List of clone(s) 

est1=VHN650E,-4,620
est2=VSJ565E,1,618
est3=VSK458E,4,703
est4=VSF644E,13,701
est5=SSC132E,29,728
est6=VSA101E,116,662
est7=SSI226E,152,725
est8=VSH869Z,173,712
est9=VSE315Z,484,677
Translated Amino Acid sequence 
HIKKNKKMNKTNQLINICILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQV
IRGGLLDINVKLTDPKGNTIFERLHFDTQMKGKQSFTAGESGAYKVCFNNEMSRFTAKVV
TFTWASEEEGVKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNA
RVVWWTIAEVIVLVVMGVGQIWYLRKWFDNKSTGRV*nnflkkkk*kkk*innynk*nnf
l*
Translated Amino Acid sequence (All Frames) 
Frame A:
HIKKNKKMNKTNQLINICILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQV
IRGGLLDINVKLTDPKGNTIFERLHFDTQMKGKQSFTAGESGAYKVCFNNEMSRFTAKVV
TFTWASEEEGVKEVAKGDSITPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNA
RVVWWTIAEVIVLVVMGVGQIWYLRKWFDNKSTGRV*nnflkkkk*kkk*innynk*nnf
l*


Frame B:
i*kkikk*iklin*lifvfwshyf*levhqh*hyklnqnhknvfiis*slerllyssikl
levay*ilmlssqiqkeiqflnvfilihk*kvnkvlplvnqvhtkfvsimkcqdlppkls
hlhgllkkkvskklpkviqslqwinqfkrlkeffnqlfmnkrn*dienkqteiplkvlmh
vlyggqslrlly*l*wvlvkfgi*engliinqqeefkiif*kkrnkkknk*tiiinkiif
yk


Frame C:
ykkk*kne*n*sin*ylyfghiifnwkfisinits*tkitrmfl*fhrvwkdfftplssy
*rwliry*c*ahrskrkynf*tssf*ytner*tkfyrw*irciqslfq**nvkiyrqsch
iymgf*rrrcqrscqr*fnhsngsisskd*ksssisys*tkeiki*rtskqryl*ky*ct
ccmvdnr*gyciscngcwsnlvfkkmv***inrkslk*ffkkkeikkkinkql**ik*ff
i
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14708-1 (Contig-U14708-1Q)
/CSM_Contig/Contig-U14708-1Q.Seq.d
         (727 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Conti...  1269  0.0
Contig-U01681-1 (Contig-U01681-1Q) /CSM_Contig/Conti...    38  0.013
Contig-U11517-1 (Contig-U11517-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U11258-1 (Contig-U11258-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U10122-1 (Contig-U10122-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U10024-1 (Contig-U10024-1Q) /CSM_Contig/Conti...    36  0.051
Contig-U14532-1 (Contig-U14532-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U13634-1 (Contig-U13634-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U13615-1 (Contig-U13615-1Q) /CSM_Contig/Conti...    34  0.20
Contig-U11179-1 (Contig-U11179-1Q) /CSM_Contig/Conti...    34  0.20

>Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Contig-U14708-1Q.Seq.d
          Length = 727

 Score = 1269 bits (640), Expect = 0.0
 Identities = 640/640 (100%)
 Strand = Plus / Plus

                                                                       
Query: 23  tgaataaaactaatcaattaattaatatttgtattttggtcacattatttttaattggaa 82
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23  tgaataaaactaatcaattaattaatatttgtattttggtcacattatttttaattggaa 82

                                                                       
Query: 83  gttcatcagcattaacattacaagttgaaccaaaatcacaagaatgtttttataatttca 142
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 83  gttcatcagcattaacattacaagttgaaccaaaatcacaagaatgtttttataatttca 142

                                                                       
Query: 143 tagagtctggaaagacttctttactcctctatcaagttattagaggtggcttattagata 202
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 tagagtctggaaagacttctttactcctctatcaagttattagaggtggcttattagata 202

                                                                       
Query: 203 ttaatgttaagctcacagatccaaaaggaaatacaatttttgaacgtcttcattttgata 262
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 ttaatgttaagctcacagatccaaaaggaaatacaatttttgaacgtcttcattttgata 262

                                                                       
Query: 263 cacaaatgaaaggtaaacaaagttttaccgctggtgaatcaggtgcatacaaagtttgtt 322
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cacaaatgaaaggtaaacaaagttttaccgctggtgaatcaggtgcatacaaagtttgtt 322

                                                                       
Query: 323 tcaataatgaaatgtcaagatttaccgccaaagttgtcacatttacatgggcttctgaag 382
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 tcaataatgaaatgtcaagatttaccgccaaagttgtcacatttacatgggcttctgaag 382

                                                                       
Query: 383 aagaaggtgtcaaagaagttgccaaaggtgattcaatcactccaatggatcaatcagttc 442
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 aagaaggtgtcaaagaagttgccaaaggtgattcaatcactccaatggatcaatcagttc 442

                                                                       
Query: 443 aaaagattgaaagagttcttcaatcagttattcatgaacaaaagaaattaagatatagag 502
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 aaaagattgaaagagttcttcaatcagttattcatgaacaaaagaaattaagatatagag 502

                                                                       
Query: 503 aacaagcaaacagagatacctctgaaagtactaatgcacgtgttgtatggtggacaatcg 562
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 aacaagcaaacagagatacctctgaaagtactaatgcacgtgttgtatggtggacaatcg 562

                                                                       
Query: 563 ctgaggttattgtattagttgtaatgggtgttggtcaaatttggtatttaagaaaatggt 622
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ctgaggttattgtattagttgtaatgggtgttggtcaaatttggtatttaagaaaatggt 622

                                                   
Query: 623 ttgataataaatcaacaggaagagtttaaaataatttttt 662
           ||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 ttgataataaatcaacaggaagagtttaaaataatttttt 662


>Contig-U01681-1 (Contig-U01681-1Q) /CSM_Contig/Contig-U01681-1Q.Seq.d
          Length = 1288

 Score = 38.2 bits (19), Expect = 0.013
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                      
Query: 33  taatcaattaattaatatttgtatttt 59
           |||||||||||||| ||||| ||||||
Sbjct: 355 taatcaattaattattatttttatttt 381


>Contig-U11517-1 (Contig-U11517-1Q) /CSM_Contig/Contig-U11517-1Q.Seq.d
          Length = 2362

 Score = 36.2 bits (18), Expect = 0.051
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 399  agttgccaaaggtgattcaatc 420
            ||||||||||||||| ||||||
Sbjct: 1632 agttgccaaaggtgaatcaatc 1653


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,288
Number of Sequences: 6905
Number of extensions: 10288
Number of successful extensions: 1092
Number of sequences better than 10.0: 112
length of query: 727
length of database: 5,674,871
effective HSP length: 16
effective length of query: 711
effective length of database: 5,564,391
effective search space: 3956282001
effective search space used: 3956282001
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.29
Homology vs DNA 
Query= Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Contig-U14708-1Q.Seq.d
         (727 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU270124) Dictyostelium discoideum vegetative cDNA clone:VS...  1116   0.0    2
(BJ426295) Dictyostelium discoideum cDNA clone:ddv58c14, 5' ...  1110   0.0    1
(AU265546) Dictyostelium discoideum vegetative cDNA clone:VS...  1080   0.0    1
(AU261276) Dictyostelium discoideum vegetative cDNA clone:VS...  1076   0.0    1
(AU271234) Dictyostelium discoideum vegetative cDNA clone:VS...  1061   0.0    1
(C92061) Dictyostelium discoideum slug cDNA, clone SSC132.       1035   0.0    1
(AU270123) Dictyostelium discoideum vegetative cDNA clone:VS...  1017   0.0    2
(AB112542) Dictyostelium discoideum empB gene for emp24/gp25...   498   0.0    3
(C90187) Dictyostelium discoideum slug cDNA, clone SSI226.       1013   0.0    1
(AU265547) Dictyostelium discoideum vegetative cDNA clone:VS...   942   0.0    1
(AU268098) Dictyostelium discoideum vegetative cDNA clone:VS...   890   0.0    1
(BJ445123) Dictyostelium discoideum cDNA clone:ddv58c14, 3' ...   698   0.0    1
(AU271235) Dictyostelium discoideum vegetative cDNA clone:VS...   688   0.0    1
(AU263015) Dictyostelium discoideum vegetative cDNA clone:VS...   339   9e-89  1
(AU034779) Dictyostelium discoideum slug cDNA, clone SLE321.      188   2e-43  1
(AU268097) Dictyostelium discoideum vegetative cDNA clone:VS...    60   1e-04  1
(AM446926) Vitis vinifera contig VV78X158346.4, whole genome...    36   0.022  2
(DU171236) 1098538163373 CHORI-243 Ovis aries genomic clone ...    36   0.036  3
(EY169514) CBTI2231.g1_N06.ab1:P Triphysaria pusilla root ti...    40   0.080  2
(AC155678) Bos taurus clone CH240-40P5, WORKING DRAFT SEQUEN...    34   0.26   2
(BM170966) EST573489 PyBS Plasmodium yoelii yoelii cDNA clon...    38   0.27   3
(BC134575) Bos taurus ring finger and SPRY domain containing...    34   0.32   2
(DN530828) 1358678 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    34   0.34   2
(DN513881) 1250887 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    34   0.34   2
(EV700055) LB01450.C21_D20 GC_BGC-14 Bos taurus cDNA clone I...    34   0.34   2
(EV693794) LB004140.C21_E13 GC_BGC-04 Bos taurus cDNA clone ...    34   0.34   2
(DY043878) 000927BEMN026583HT BEMN Bos taurus cDNA 5', mRNA ...    34   0.35   2
(BF599965) 264374 MARC 3BOV Bos taurus cDNA 5', mRNA sequence.     34   0.35   2
(AM471693) Vitis vinifera contig VV78X028385.7, whole genome...    48   0.46   1
(CT488725) A BAC library has been constructed from cultivar ...    48   0.46   1
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    32   1.0    9
(CS374510) Sequence 613 from Patent WO2006034879.                  32   1.2    4
(CS374238) Sequence 341 from Patent WO2006034879.                  32   1.2    4
(AC188791) Callithrix jacchus BAC clone CH259-6H12 from chro...    32   1.4    7
(BX649397) Zebrafish DNA sequence from clone CH211-14J20 in ...    46   1.8    1
(AM428513) Vitis vinifera contig VV78X146330.3, whole genome...    46   1.8    1
(AC191191) Aotus nancymaae clone CH258-425J23, WORKING DRAFT...    46   1.8    1
(EK410233) 1095505158615 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.8    1
(EH305031) UAHYP_17A_F_G05 UaHyphae_ARS Uromyces appendicula...    46   1.8    1
(EH305027) UAHYP_17A_R_G05 UaHyphae_ARS Uromyces appendicula...    46   1.8    1
(FE664390) UAHYP_21C_R_A09 UaHyphae_ARS Uromyces appendicula...    46   1.8    1
(BX119926) Zebrafish DNA sequence from clone CH211-42C8 in l...    42   3.5    4
(AC126910) Rattus norvegicus clone CH230-175J11, *** SEQUENC...    40   3.6    2
(AL590626) Mouse DNA sequence from clone RP23-143O13 on chro...    38   3.8    4
(CB445550) 696913 MARC 6BOV Bos taurus cDNA 3', mRNA sequence.     34   4.1    3
(CU467829) Zebrafish DNA sequence from clone CH211-237E19 in...    42   4.7    3
(FF327081) 280431198 Pea aphid whole body normalized full le...    32   4.7    2
(EE781602) 020709OMGB11053047HT OMGB1 Ovis aries cDNA, mRNA ...    34   4.8    2
(EJ233378) 1092404060271 Global-Ocean-Sampling_GS-27-01-01-1...    30   5.0    3
(AC188150) Canis Familiaris chromosome 6, clone XX-346D24, c...    36   5.3    6
(AP007663) Lotus japonicus genomic DNA, chromosome 1, clone:...    36   5.7    4
(CU856378) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   6.2    4
(AC225406) Nomascus leucogenys leucogenys clone CH271-17G2, ...    36   6.8    5
(AC162375) Mus musculus BAC clone RP24-466F1 from chromosome...    44   7.2    1
(AC134337) Mus musculus BAC clone RP23-252I24 from 8, comple...    44   7.2    1
(AC121604) Mus musculus BAC clone RP23-312E2 from chromosome...    44   7.2    1
(AL137226) Human chromosome 14 DNA sequence BAC R-356A6 of l...    44   7.2    1
(AC090568) Homo sapiens chromosome 8, clone RP11-69I13, comp...    44   7.2    1
(AC027259) Homo sapiens, clone RP11-74D11, complete sequence.      44   7.2    1
(AC161710) Atelerix albiventris clone LB4-114L17, WORKING DR...    44   7.2    1
(AC155043) Bos taurus clone CH240-35C19, WORKING DRAFT SEQUE...    44   7.2    1
(AC152578) Bos taurus clone CH240-16J19, WORKING DRAFT SEQUE...    44   7.2    1
(CU914594) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.2    1
(CU442710) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.2    1
(CT737360) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   7.2    1
(AP007874) Lotus japonicus genomic DNA, chromosome 1, clone:...    44   7.2    1
(AL139165) Human chromosome 14 DNA sequence *** IN PROGRESS ...    44   7.2    1
(AC232047) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.2    1
(AC232016) Solanum tuberosum strain Diploid genotype RH89-03...    44   7.2    1
(AC222588) Bos taurus clone CH240-445D18, WORKING DRAFT SEQU...    44   7.2    1
(AC218562) Bos taurus clone CH240-312F16, WORKING DRAFT SEQU...    44   7.2    1
(AC215530) Oryza officinalis clone OO__Ba0108P04, *** SEQUEN...    44   7.2    1
(AC182885) Bos taurus clone CH240-524C1, WORKING DRAFT SEQUE...    44   7.2    1
(AC174658) Bos taurus clone CH240-524G16, WORKING DRAFT SEQU...    44   7.2    1
(AC165556) Bos taurus clone CH240-172N15, WORKING DRAFT SEQU...    44   7.2    1
(AC024063) Homo sapiens chromosome 8 clone RP11-69I13, WORKI...    44   7.2    1
(AC009618) Homo sapiens chromosome 14 clone RP11-363G18 map ...    44   7.2    1
(AZ105156) RPCI-23-37O24.TV RPCI-23 Mus musculus genomic clo...    44   7.2    1
(ET954930) CHO_OF568xe11r1.ab1 CHO_OF Nicotiana tabacum geno...    44   7.2    1
(ER286290) 1092343571739 Global-Ocean-Sampling_GS-34-01-01-1...    44   7.2    1
(EK301757) 1095462367062 Global-Ocean-Sampling_GS-31-01-01-1...    44   7.2    1
(EJ624949) 1092963140480 Global-Ocean-Sampling_GS-29-01-01-1...    44   7.2    1
(EJ084172) 1095460082220 Global-Ocean-Sampling_GS-26-01-01-1...    44   7.2    1
(CW485823) fsbb001f248m03f0 Sorghum methylation filtered lib...    44   7.2    1
(CR826261) GR0AAA57CH08RM1 INRA BAC Bos taurus genomic clone...    44   7.2    1
(BZ386358) EINBP85TR EI_10_12_KB Entamoeba invadens genomic ...    44   7.2    1
(ES752479) C20L_12_H05_E002.g1 USDA-Tifton Peanut Library C2...    44   7.2    1
(EL528515) EST_omor_eva_7668 omoreva mixed_tissue Osmerus mo...    44   7.2    1
(DN137369) ACAE-aaa08j21.b3 Hydra EST UCI 5 Hydra magnipapil...    44   7.2    1
(DB758204) Apis mellifera head cDNA, RIKEN full-length enric...    44   7.2    1
(AM165173) Tuber borchii EST, clone T1I9.                          44   7.2    1
(CN557950) tae45h06.y1 Hydra EST Darmstadt I Hydra magnipapi...    44   7.2    1
(CD566395) tac04g08.x1 Hydra EST -III Hydra magnipapillata c...    44   7.2    1
(CD285848) tab02d12.x1 Hydra EST -III Hydra magnipapillata c...    44   7.2    1
(FE772204) CCAG6523.g1 CCAG Petrolisthes cinctipes heart, gi...    44   7.2    1
(FE764827) CCAG2292.g1 CCAG Petrolisthes cinctipes heart, gi...    44   7.2    1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen...    44   7.2    1
(AC176275) Strongylocentrotus purpuratus clone R3-3060D17, W...    40   7.5    4
(AC196906) Atelerix albiventris clone LB4-422P18, WORKING DR...    36   8.3    4

>(AU270124) Dictyostelium discoideum vegetative cDNA clone:VSJ565,
           3' end single read.
          Length = 586

 Score = 1116 bits (563), Expect(2) = 0.0
 Identities = 563/563 (100%)
 Strand = Plus / Plus


Query: 31  actaatcaattaattaatatttgtattttggtcacattatttttaattggaagttcatca 90
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   actaatcaattaattaatatttgtattttggtcacattatttttaattggaagttcatca 60


Query: 91  gcattaacattacaagttgaaccaaaatcacaagaatgtttttataatttcatagagtct 150
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  gcattaacattacaagttgaaccaaaatcacaagaatgtttttataatttcatagagtct 120


Query: 151 ggaaagacttctttactcctctatcaagttattagaggtggcttattagatattaatgtt 210
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggaaagacttctttactcctctatcaagttattagaggtggcttattagatattaatgtt 180


Query: 211 aagctcacagatccaaaaggaaatacaatttttgaacgtcttcattttgatacacaaatg 270
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aagctcacagatccaaaaggaaatacaatttttgaacgtcttcattttgatacacaaatg 240


Query: 271 aaaggtaaacaaagttttaccgctggtgaatcaggtgcatacaaagtttgtttcaataat 330
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 aaaggtaaacaaagttttaccgctggtgaatcaggtgcatacaaagtttgtttcaataat 300


Query: 331 gaaatgtcaagatttaccgccaaagttgtcacatttacatgggcttctgaagaagaaggt 390
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gaaatgtcaagatttaccgccaaagttgtcacatttacatgggcttctgaagaagaaggt 360


Query: 391 gtcaaagaagttgccaaaggtgattcaatcactccaatggatcaatcagttcaaaagatt 450
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 gtcaaagaagttgccaaaggtgattcaatcactccaatggatcaatcagttcaaaagatt 420


Query: 451 gaaagagttcttcaatcagttattcatgaacaaaagaaattaagatatagagaacaagca 510
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 gaaagagttcttcaatcagttattcatgaacaaaagaaattaagatatagagaacaagca 480


Query: 511 aacagagatacctctgaaagtactaatgcacgtgttgtatggtggacaatcgctgaggtt 570
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aacagagatacctctgaaagtactaatgcacgtgttgtatggtggacaatcgctgaggtt 540


Query: 571 attgtattagttgtaatgggtgt 593
           |||||||||||||||||||||||
Sbjct: 541 attgtattagttgtaatgggtgt 563

 Score = 32.2 bits (16), Expect(2) = 0.0
 Identities = 16/16 (100%)
 Strand = Plus / Plus


Query: 603 ttggtatttaagaaaa 618
           ||||||||||||||||
Sbjct: 571 ttggtatttaagaaaa 586

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 866,284,170
Number of extensions: 56501562
Number of successful extensions: 4665513
Number of sequences better than 10.0: 101
Length of query: 727
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 703
Effective length of database: 97,308,875,965
Effective search space: 68408139803395
Effective search space used: 68408139803395
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14708-1 (Contig-U14708-1Q) /CSM_Contig/Contig-U14708-1Q.Seq.d
         (727 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT046693_1(BT046693|pid:none) Salmo salar clone ssal-eve-549-119...   132   1e-29
BT078311_1(BT078311|pid:none) Lepeophtheirus salmonis Pacific fo...   128   2e-28
BC050165_1(BC050165|pid:none) Danio rerio transmembrane emp24 do...   127   3e-28
(A7SXK3) RecName: Full=Transmembrane emp24 domain-containing pro...   127   3e-28
AE014298_657(AE014298|pid:none) Drosophila melanogaster chromoso...   125   1e-27
BT077340_1(BT077340|pid:none) Lepeophtheirus salmonis Pacific fo...   125   2e-27
BT079590_1(BT079590|pid:none) Esox lucius clone eluc-evq-534-324...   124   4e-27
(Q769F9) RecName: Full=Transmembrane emp24 domain-containing pro...   124   4e-27
BC044095_1(BC044095|pid:none) Xenopus laevis coated vesicle memb...   123   7e-27
AK027512_1(AK027512|pid:none) Homo sapiens cDNA FLJ14606 fis, cl...   123   7e-27
BT075513_1(BT075513|pid:none) Osmerus mordax clone omor-eva-518-...   122   9e-27
(P49020) RecName: Full=Transmembrane emp24 domain-containing pro...   122   1e-26
(Q63524) RecName: Full=Transmembrane emp24 domain-containing pro...   122   1e-26
(Q9R0Q3) RecName: Full=Transmembrane emp24 domain-containing pro...   122   1e-26
(O17528) RecName: Full=Suppressor/enhancer of lin-12 protein 9; ...   121   2e-26
BC079781_1(BC079781|pid:none) Xenopus laevis MGC86295 protein, m...   121   3e-26
(Q15363) RecName: Full=Transmembrane emp24 domain-containing pro...   121   3e-26
BC082914_1(BC082914|pid:none) Xenopus laevis MGC86295 protein, m...   121   3e-26
AF151867_1(AF151867|pid:none) Homo sapiens CGI-109 protein mRNA,...   120   3e-26
BC064279_1(BC064279|pid:none) Xenopus tropicalis transmembrane e...   120   4e-26
CR942760_1(CR942760|pid:none) Xenopus tropicalis finished cDNA, ...   120   4e-26
AJ720174_1(AJ720174|pid:none) Gallus gallus mRNA for hypothetica...   119   1e-25
AE017341_60(AE017341|pid:none) Cryptococcus neoformans var. neof...   117   3e-25
BC067383_1(BC067383|pid:none) Danio rerio transmembrane emp24 pr...   116   8e-25
AB023969_1(AB023969|pid:none) Polysphondylium pallidum lbrA gene...   115   2e-24
FN314585_1(FN314585|pid:none) Schistosoma japonicum isolate Anhu...   114   2e-24
FN357408_8(FN357408|pid:none) Schistosoma mansoni genome sequenc...   114   3e-24
DQ440427_1(DQ440427|pid:none) Aedes aegypti clone AET-572 membra...   112   1e-23
BT073722_1(BT073722|pid:none) Oncorhynchus mykiss clone omyk-evo...   111   3e-23
BT078822_1(BT078822|pid:none) Esox lucius clone eluc-evq-527-370...   110   3e-23
BT049188_1(BT049188|pid:none) Salmo salar clone ssal-eve-570-075...   110   6e-23
AJ627205_1(AJ627205|pid:none) Oncorhynchus mykiss mRNA for membr...   108   1e-22
BT056538_1(BT056538|pid:none) Salmo salar clone ssal-eve-542-084...   108   1e-22
BT073768_1(BT073768|pid:none) Oncorhynchus mykiss clone omyk-evo...   108   1e-22
BT073999_1(BT073999|pid:none) Oncorhynchus mykiss clone omyk-evo...   108   1e-22
AK089965_1(AK089965|pid:none) Mus musculus colon RCB-0549 Cle-H3...   106   6e-22
BT075180_1(BT075180|pid:none) Osmerus mordax clone omor-eva-512-...   105   1e-21
BT056994_1(BT056994|pid:none) Salmo salar clone ssal-eve-535-246...   105   1e-21
BC133434_1(BC133434|pid:none) Bos taurus transmembrane emp24 pro...   103   7e-21
BC056540_1(BC056540|pid:none) Danio rerio transmembrane emp24 pr...   103   7e-21
(Q9Y3Q3) RecName: Full=Transmembrane emp24 domain-containing pro...   101   2e-20
CR382131_1453(CR382131|pid:none) Yarrowia lipolytica strain CLIB...   100   6e-20
AL451018_3(AL451018|pid:none) Neurospora crassa DNA linkage grou...   100   8e-20
AY304581_1(AY304581|pid:none) Homo sapiens TIRAP3b long form (TI...    99   1e-19
AE014298_1774(AE014298|pid:none) Drosophila melanogaster chromos...    99   2e-19
FM992695_671(FM992695|pid:none) Candida dubliniensis CD36 chromo...    99   2e-19
AM270206_15(AM270206|pid:none) Aspergillus niger contig An09c017...    97   4e-19
AP007162_436(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...    96   1e-18
AY552062_1(AY552062|pid:none) Aedes aegypti putative coated vesi...    95   2e-18
FN357365_53(FN357365|pid:none) Schistosoma mansoni genome sequen...    95   2e-18
AK075218_1(AK075218|pid:none) Homo sapiens cDNA FLJ90737 fis, cl...    95   3e-18
BT081175_1(BT081175|pid:none) Caligus clemensi clone ccle-evs-50...    94   4e-18
DQ151584_1(DQ151584|pid:none) Pichia angusta Erp3p (ERP3) and Em...    94   4e-18
AB261040_1(AB261040|pid:none) Entamoeba histolytica gene for EhE...    93   7e-18
AM920436_1617(AM920436|pid:none) Penicillium chrysogenum Wiscons...    92   2e-17
CU633438_492(CU633438|pid:none) Podospora anserina genomic DNA c...    91   4e-17
(O13770) RecName: Full=Uncharacterized membrane protein C17A5.08...    91   4e-17
BC080371_1(BC080371|pid:none) Xenopus tropicalis transmembrane e...    91   5e-17
BT077795_1(BT077795|pid:none) Lepeophtheirus salmonis Pacific fo...    89   2e-16
BC059496_1(BC059496|pid:none) Danio rerio transmembrane emp24-li...    88   2e-16
(O35587) RecName: Full=Transmembrane protein Tmp21; AltName: Ful...    88   2e-16
AY222960_1(AY222960|pid:none) Schistosoma japonicum SJCHGC06199 ...    88   3e-16
BT056983_1(BT056983|pid:none) Salmo salar clone ssal-rgb-543-297...    87   4e-16
(Q9P7I9) RecName: Full=Endosomal protein P24B; Flags: Precursor;...    87   5e-16
BC054179_1(BC054179|pid:none) Xenopus laevis hypothetical protei...    87   5e-16
DQ151584_2(DQ151584|pid:none) Pichia angusta Erp3p (ERP3) and Em...    87   5e-16
AK304210_1(AK304210|pid:none) Homo sapiens cDNA FLJ57776 complet...    87   7e-16
BC107426_1(BC107426|pid:none) Homo sapiens transmembrane emp24 p...    87   7e-16
(Q63584) RecName: Full=Transmembrane emp24 domain-containing pro...    86   1e-15
BC054154_1(BC054154|pid:none) Xenopus laevis transmembrane prote...    86   1e-15
BT044389_1(BT044389|pid:none) Drosophila melanogaster FI08064 fu...    86   1e-15
BT075301_1(BT075301|pid:none) Osmerus mordax clone omor-eva-510-...    86   2e-15
T22362(T22362) hypothetical protein F47G9.1 - Caenorhabditis ele...    86   2e-15
(Q5E971) RecName: Full=Transmembrane emp24 domain-containing pro...    85   2e-15
BC118699_1(BC118699|pid:none) Xenopus tropicalis hypothetical pr...    85   2e-15
AM494969_223(AM494969|pid:none) Leishmania braziliensis chromoso...    85   2e-15
AK340677_1(AK340677|pid:none) Acyrthosiphon pisum ACYPI010154 mR...    85   3e-15
X90517_1(X90517|pid:none) X.laevis mRNA for translocon-associate...    84   3e-15
AP005393_18(AP005393|pid:none) Oryza sativa Japonica Group genom...    84   4e-15
CP000501_144(CP000501|pid:none) Pichia stipitis CBS 6054 chromos...    84   4e-15
BT053421_1(BT053421|pid:none) Medicago truncatula clone MTYFP_FQ...    84   6e-15
(Q5RE32) RecName: Full=Transmembrane emp24 domain-containing pro...    83   8e-15
AM502250_253(AM502250|pid:none) Leishmania infantum chromosome 32.     83   1e-14
BT011389_1(BT011389|pid:none) Drosophila melanogaster AT29354 fu...    82   1e-14
BC064755_1(BC064755|pid:none) Mus musculus transmembrane emp24-l...    82   1e-14
(Q9D1D4) RecName: Full=Transmembrane emp24 domain-containing pro...    82   1e-14
AE017347_301(AE017347|pid:none) Cryptococcus neoformans var. neo...    82   2e-14
BX248754_1(BX248754|pid:none) human full-length cDNA 5-PRIME end...    82   2e-14
BT049368_1(BT049368|pid:none) Salmo salar clone ssal-rgb-537-051...    82   2e-14
(P49755) RecName: Full=Transmembrane emp24 domain-containing pro...    82   2e-14
BT073560_1(BT073560|pid:none) Oncorhynchus mykiss clone omyk-evn...    82   2e-14
AJ720718_1(AJ720718|pid:none) Gallus gallus mRNA for hypothetica...    82   2e-14
AP001300_1(AP001300|pid:none) Arabidopsis thaliana genomic DNA, ...    82   2e-14
AK150560_1(AK150560|pid:none) Mus musculus bone marrow macrophag...    82   2e-14
CR382137_150(CR382137|pid:none) Debaryomyces hansenii strain CBS...    82   2e-14
BT071857_1(BT071857|pid:none) Salmo salar clone ssal-rgf-002-249...    81   3e-14
AE016819_398(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    81   3e-14
BT081028_1(BT081028|pid:none) Caligus clemensi clone ccle-evs-51...    81   3e-14
AL832012_1(AL832012|pid:none) Homo sapiens mRNA; cDNA DKFZp451D0...    81   4e-14
EF145918_1(EF145918|pid:none) Populus trichocarpa clone WS0114_E...    81   4e-14
AK152581_1(AK152581|pid:none) Mus musculus bone marrow macrophag...    80   5e-14
(Q9CXE7) RecName: Full=Transmembrane emp24 domain-containing pro...    80   5e-14
BC020076_1(BC020076|pid:none) Mus musculus transmembrane emp24 p...    80   6e-14
BT037055_1(BT037055|pid:none) Zea mays full-length cDNA clone ZM...    80   8e-14
(Q9BVK6) RecName: Full=Transmembrane emp24 domain-containing pro...    80   8e-14
AP004125_8(AP004125|pid:none) Oryza sativa Japonica Group genomi...    80   8e-14
BC001123_1(BC001123|pid:none) Homo sapiens transmembrane emp24 p...    80   8e-14
AK313292_1(AK313292|pid:none) Homo sapiens cDNA, FLJ93804, highl...    80   8e-14
AM294798_1(AM294798|pid:none) Drosophila melanogaster CG11785 ge...    80   8e-14
(Q6AXN3) RecName: Full=Transmembrane emp24 domain-containing pro...    79   1e-13
BT041117_1(BT041117|pid:none) Zea mays full-length cDNA clone ZM...    79   1e-13
AM269977_22(AM269977|pid:none) Aspergillus niger contig An01c030...    79   1e-13
CU928179_812(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    79   1e-13
FN315258_1(FN315258|pid:none) Schistosoma japonicum isolate Anhu...    79   2e-13
AE014297_1026(AE014297|pid:none) Drosophila melanogaster chromos...    79   2e-13
BT074939_1(BT074939|pid:none) Osmerus mordax clone omor-rgc-518-...    79   2e-13
EZ000131_1(EZ000131|pid:none) TSA: Schistosoma japonicum SJCHGC0...    79   2e-13
BC071427_1(BC071427|pid:none) Danio rerio zgc:86755, mRNA (cDNA ...    79   2e-13
EU934418_1(EU934418|pid:none) TSA: Anopheles darlingi AD-295 emp...    79   2e-13
BC074441_1(BC074441|pid:none) Xenopus laevis MGC84702 protein, m...    78   2e-13
FM992690_586(FM992690|pid:none) Candida dubliniensis CD36 chromo...    78   2e-13
(Q90515) RecName: Full=Transmembrane emp24 domain-containing pro...    78   2e-13
BT077508_1(BT077508|pid:none) Lepeophtheirus salmonis Pacific fo...    78   2e-13
AM294801_1(AM294801|pid:none) Drosophila melanogaster CG11785 ge...    78   2e-13
(Q9HEK4) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    78   2e-13
AK294122_1(AK294122|pid:none) Homo sapiens cDNA FLJ53032 complet...    78   3e-13
BT048675_1(BT048675|pid:none) Salmo salar clone ssal-eve-564-043...    78   3e-13
BC168726_1(BC168726|pid:none) Rattus norvegicus transmembrane em...    78   3e-13
CR382135_246(CR382135|pid:none) Debaryomyces hansenii strain CBS...    78   3e-13
(Q9Y3A6) RecName: Full=Transmembrane emp24 domain-containing pro...    78   3e-13
(Q7Z7H5) RecName: Full=Transmembrane emp24 domain-containing pro...    78   3e-13
AJ719300_1(AJ719300|pid:none) Gallus gallus mRNA for hypothetica...    77   4e-13
(Q99KF1) RecName: Full=Transmembrane emp24 domain-containing pro...    77   4e-13
AC155889_16(AC155889|pid:none) Medicago truncatula chromosome 2 ...    77   5e-13
BC089720_1(BC089720|pid:none) Xenopus tropicalis MGC108344 prote...    77   5e-13
BC088422_1(BC088422|pid:none) Rattus norvegicus transmembrane em...    77   7e-13
AL451017_23(AL451017|pid:none) Neurospora crassa DNA linkage gro...    77   7e-13
BT045554_1(BT045554|pid:none) Salmo salar clone ssal-rgf-524-314...    77   7e-13
BC123580_1(BC123580|pid:none) Bos taurus transmembrane emp24 pro...    76   9e-13
AK169001_1(AK169001|pid:none) Mus musculus 17 days embryo kidney...    76   9e-13
X90872_1(X90872|pid:none) H.sapiens mRNA for gp25L2 protein.           76   9e-13
(P32803) RecName: Full=Endosomal protein P24B; AltName: Full=Bas...    76   1e-12
AK044120_1(AK044120|pid:none) Mus musculus 10 days neonate corte...    75   2e-12
AM432265_5(AM432265|pid:none) Vitis vinifera contig VV78X079613....    75   2e-12
FN392321_700(FN392321|pid:none) Pichia pastoris GS115 chromosome...    75   2e-12
AM920437_316(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    75   2e-12
CU928176_549(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    75   3e-12
(Q5A302) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    75   3e-12
BT021063_1(BT021063|pid:none) Bos taurus transmembrane emp24 pro...    75   3e-12
(Q6BTC2) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    74   4e-12
CR382126_541(CR382126|pid:none) Kluyveromyces lactis strain NRRL...    74   4e-12
(Q5B5L5) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    74   4e-12
BC087506_1(BC087506|pid:none) Xenopus laevis hypothetical protei...    74   4e-12
BT041017_1(BT041017|pid:none) Zea mays full-length cDNA clone ZM...    74   4e-12
EU971148_1(EU971148|pid:none) Zea mays clone 358430 transmembran...    74   5e-12
FM253350_1(FM253350|pid:none) Blattella germanica partial mRNA f...    73   8e-12
CU640366_128(CU640366|pid:none) Podospora anserina genomic DNA c...    73   8e-12
BT076683_1(BT076683|pid:none) Caligus rogercresseyi clone crog-e...    73   8e-12
BC054575_1(BC054575|pid:none) Danio rerio transmembrane emp24 pr...    73   8e-12
DQ443143_1(DQ443143|pid:none) Bombyx mori transmembrane traffick...    72   1e-11
EF145610_1(EF145610|pid:none) Populus trichocarpa clone WS01126_...    72   1e-11
EF145950_1(EF145950|pid:none) Populus trichocarpa clone WS0114_H...    72   1e-11
AE016817_426(AE016817|pid:none) Ashbya gossypii (= Eremothecium ...    72   1e-11
BC084535_1(BC084535|pid:none) Xenopus tropicalis hypothetical LO...    72   2e-11
BC123278_1(BC123278|pid:none) Xenopus laevis transmembrane emp24...    72   2e-11
DQ440320_1(DQ440320|pid:none) Aedes aegypti clone AET-409 transm...    72   2e-11
(P53198) RecName: Full=Protein ERP6; Flags: Precursor;  &S64004(...    72   2e-11
AM466070_1(AM466070|pid:none) Vitis vinifera contig VV78X151322....    71   3e-11
BT044973_1(BT044973|pid:none) Salmo salar clone ssal-rgf-508-296...    71   4e-11
AB261038_1(AB261038|pid:none) Entamoeba histolytica gene for EhE...    71   4e-11
AC119412_20(AC119412|pid:none) Medicago truncatula clone mth2-31...    70   5e-11
AK293308_1(AK293308|pid:none) Homo sapiens cDNA FLJ54845 complet...    70   5e-11
BC129377_1(BC129377|pid:none) Danio rerio zgc:158680, mRNA (cDNA...    70   7e-11
EF082959_1(EF082959|pid:none) Picea sitchensis clone WS02722_I15...    70   9e-11
CR380954_199(CR380954|pid:none) Candida glabrata strain CBS138 c...    70   9e-11
CR382124_610(CR382124|pid:none) Kluyveromyces lactis strain NRRL...    69   1e-10
AC084766_4(AC084766|pid:none) Oryza sativa chromosome 3 BAC OSJN...    69   1e-10
(Q6C503) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    69   2e-10
CU928169_261(CU928169|pid:none) Kluyveromyces thermotolerans str...    68   3e-10
AK341432_1(AK341432|pid:none) Acyrthosiphon pisum ACYPI008048 mR...    68   3e-10
AE014298_2184(AE014298|pid:none) Drosophila melanogaster chromos...    68   3e-10
EU955673_1(EU955673|pid:none) Zea mays clone 1542082 transmembra...    68   3e-10
EF148792_1(EF148792|pid:none) Populus trichocarpa x Populus delt...    68   3e-10
BC038511_1(BC038511|pid:none) Homo sapiens transmembrane emp24 p...    68   3e-10
BC082910_1(BC082910|pid:none) Xenopus laevis hypothetical LOC494...    68   3e-10
AY693075_1(AY693075|pid:none) Saccharomyces cerevisiae clone FLH...    67   4e-10
CU928171_159(CU928171|pid:none) Kluyveromyces thermotolerans str...    67   6e-10
(Q3V009) RecName: Full=Transmembrane emp24 domain-containing pro...    67   6e-10
(Q2TBK5) RecName: Full=Transmembrane emp24 domain-containing pro...    67   6e-10
U41805_1(U41805|pid:none) Mus musculus putative T1/ST2 receptor ...    67   6e-10
(Q13445) RecName: Full=Transmembrane emp24 domain-containing pro...    66   1e-09
(Q5R7E6) RecName: Full=Transmembrane emp24 domain-containing pro...    66   1e-09
AB097009_1(AB097009|pid:none) Homo sapiens mRNA for putative NFk...    66   1e-09
AK297710_1(AK297710|pid:none) Homo sapiens cDNA FLJ58917 complet...    66   1e-09
AY061384_1(AY061384|pid:none) Drosophila melanogaster LD30746 fu...    65   2e-09
FN357583_13(FN357583|pid:none) Schistosoma mansoni genome sequen...    65   2e-09
AM920437_1876(AM920437|pid:none) Penicillium chrysogenum Wiscons...    65   2e-09
AY543009_1(AY543009|pid:none) Bigelowiella natans COP protein mR...    65   2e-09
CP001574_100(CP001574|pid:none) Micromonas sp. RCC299 chromosome...    65   3e-09
FN392321_1171(FN392321|pid:none) Pichia pastoris GS115 chromosom...    65   3e-09
AM424591_1(AM424591|pid:none) Vitis vinifera contig VV78X035889....    65   3e-09
EU972004_1(EU972004|pid:none) Zea mays clone 373329 transmembran...    64   4e-09
AK075642_1(AK075642|pid:none) Mus musculus 18-day embryo whole b...    64   4e-09
AK304148_1(AK304148|pid:none) Homo sapiens cDNA FLJ58873 complet...    64   4e-09
BT080990_1(BT080990|pid:none) Caligus clemensi clone ccle-evs-50...    64   4e-09
AB172136_1(AB172136|pid:none) Macaca fascicularis brain cDNA clo...    64   5e-09
AC006535_7(AC006535|pid:none) Genomic sequence for Arabidopsis t...    64   5e-09
CP000583_483(CP000583|pid:none) Ostreococcus lucimarinus CCE9901...    64   5e-09
BT015148_1(BT015148|pid:none) Arabidopsis thaliana At2g03290 gen...    64   6e-09
Y17127_1(Y17127|pid:none) Cyprinus carpio mRNA for S31 protein.        64   6e-09
AK075529_1(AK075529|pid:none) Homo sapiens cDNA PSEC0228 fis, cl...    63   8e-09
AK302920_1(AK302920|pid:none) Homo sapiens cDNA FLJ52032 complet...    63   8e-09
AC161863_28(AC161863|pid:none) Medicago truncatula clone mth2-17...    63   8e-09
AC161863_26(AC161863|pid:none) Medicago truncatula clone mth2-17...    62   1e-08
AX969249_1(AX969249|pid:none) Sequence 52 from Patent EP1104808.       62   2e-08
CU928169_341(CU928169|pid:none) Kluyveromyces thermotolerans str...    61   3e-08
(Q0VCA9) RecName: Full=Transmembrane emp24 domain-containing pro...    61   3e-08
AJ606027_1(AJ606027|pid:none) Triticum aestivum partial mRNA for...    60   5e-08
(Q9CQG0) RecName: Full=Transmembrane emp24 domain-containing pro...    60   7e-08
AY557710_1(AY557710|pid:none) Saccharomyces cerevisiae clone FLH...    60   7e-08
(O14324) RecName: Full=Uncharacterized membrane protein C16E9.09...    60   7e-08
FM992688_1009(FM992688|pid:none) Candida dubliniensis CD36 chrom...    60   7e-08
AM502249_147(AM502249|pid:none) Leishmania infantum chromosome 31.     60   9e-08
AM502249_146(AM502249|pid:none) Leishmania infantum chromosome 31.     60   9e-08
CU928179_433(CU928179|pid:none) Zygosaccharomyces rouxii strain ...    60   9e-08
(Q8WW62) RecName: Full=Transmembrane emp24 domain-containing pro...    59   1e-07
AM883112_1(AM883112|pid:none) Anas platyrhynchos partial mRNA fo...    59   1e-07
AY849658_1(AY849658|pid:none) Magnaporthe grisea ERP1 protein-li...    59   1e-07
(Q5KMQ3) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    59   2e-07
BX295540_3(BX295540|pid:none) Neurospora crassa DNA linkage grou...    59   2e-07
AE017344_505(AE017344|pid:none) Cryptococcus neoformans var. neo...    59   2e-07
CU928173_209(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    59   2e-07
AC068197_23(AC068197|pid:none) Genomic sequence for Arabidopsis ...    59   2e-07
CR382139_628(CR382139|pid:none) Debaryomyces hansenii strain CBS...    58   3e-07
FN319598_1(FN319598|pid:none) Schistosoma japonicum isolate Anhu...    58   3e-07
AC073178_16(AC073178|pid:none) Arabidopsis thaliana chromosome 1...    58   3e-07
AM910996_133(AM910996|pid:none) Plasmodium knowlesi strain H chr...    58   3e-07
(A8MT96) RecName: Full=Glycoprotein 25L;          Short=GP25L; F...    58   3e-07
AK118529_1(AK118529|pid:none) Arabidopsis thaliana At1g26690 mRN...    57   6e-07
CR382121_367(CR382121|pid:none) Kluyveromyces lactis strain NRRL...    57   6e-07
BC020827_1(BC020827|pid:none) Homo sapiens transmembrane emp24 p...    56   1e-06
CT005268_113(CT005268|pid:none) Leishmania major strain Friedlin...    56   1e-06
AE014296_1127(AE014296|pid:none) Drosophila melanogaster chromos...    56   1e-06
FN319600_1(FN319600|pid:none) Schistosoma japonicum isolate Anhu...    55   2e-06
CR380957_72(CR380957|pid:none) Candida glabrata strain CBS138 ch...    55   2e-06
AK296800_1(AK296800|pid:none) Homo sapiens cDNA FLJ53754 complet...    55   2e-06
AE016819_229(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    55   3e-06
AK159813_1(AK159813|pid:none) Mus musculus osteoclast-like cell ...    55   3e-06
(Q9D2R4) RecName: Full=Glycoprotein 25L;          Short=GP25L; F...    55   3e-06
CR380955_47(CR380955|pid:none) Candida glabrata strain CBS138 ch...    54   4e-06
(P38819) RecName: Full=Protein ERP5; Flags: Precursor;  &S48952(...    54   5e-06
CU928178_409(CU928178|pid:none) Zygosaccharomyces rouxii strain ...    54   5e-06
CR382133_365(CR382133|pid:none) Debaryomyces hansenii strain CBS...    54   5e-06
AB112544_1(AB112544|pid:none) Dictyostelium discoideum empD mRNA...    53   8e-06
AC159404_21(AC159404|pid:none) Trypanosoma brucei chromosome 8 c...    53   8e-06
CP000585_128(CP000585|pid:none) Ostreococcus lucimarinus CCE9901...    52   1e-05
AC009176_13(AC009176|pid:none) Arabidopsis thaliana chromosome I...    52   2e-05
(O13946) RecName: Full=Endoplasmic reticulum vesicle protein 25;...    52   2e-05
CR382125_930(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    52   2e-05
CR380953_21(CR380953|pid:none) Candida glabrata strain CBS138 ch...    51   4e-05
BC087777_1(BC087777|pid:none) Xenopus tropicalis transmembrane e...    51   4e-05
AL109673_1(AL109673|pid:none) Homo sapiens mRNA full length inse...    50   5e-05
AL117354_3(AL117354|pid:none) Human DNA sequence from clone RP5-...    50   9e-05
AX058594_1(AX058594|pid:none) Sequence 1 from Patent WO0075321. ...    49   1e-04
AL844509_145(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    49   1e-04
BC100009_1(BC100009|pid:none) Danio rerio transmembrane emp24 pr...    48   3e-04
(Q12403) RecName: Full=Protein ERP3; Flags: Precursor;  &S52501(...    48   4e-04
AM502249_343(AM502249|pid:none) Leishmania infantum chromosome 31.     47   6e-04
CR940347_25(CR940347|pid:none) Theileria annulata strain Ankara ...    47   8e-04
FN357348_11(FN357348|pid:none) Schistosoma mansoni genome sequen...    46   0.001
AM910994_195(AM910994|pid:none) Plasmodium knowlesi strain H chr...    46   0.001
CR382132_971(CR382132|pid:none) Yarrowia lipolytica strain CLIB1...    45   0.002
G01160(G01160) transmembrane protein - human (fragment)  &X97444...    45   0.002
CP000496_469(CP000496|pid:none) Pichia stipitis CBS 6054 chromos...    44   0.005
AC159429_19(AC159429|pid:none) Trypanosoma brucei chromosome 7 c...    44   0.005
CT005268_278(CT005268|pid:none) Leishmania major strain Friedlin...    44   0.007
CU928169_682(CU928169|pid:none) Kluyveromyces thermotolerans str...    43   0.009
Y17129_1(Y17129|pid:none) Anguilla anguilla mRNA for S31 protein.      43   0.009
AP008215_795(AP008215|pid:none) Oryza sativa (japonica cultivar-...    42   0.015
CR954201_414(CR954201|pid:none) Ostreococcus tauri strain OTTH05...    42   0.015
AE016818_589(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    40   0.097
AL844504_266(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    39   0.13
AM494968_308(AM494968|pid:none) Leishmania braziliensis chromoso...    39   0.16
AK014065_1(AK014065|pid:none) Mus musculus 13 days embryo head c...    38   0.37
AE004438_144(AE004438|pid:none) Halobacterium sp. NRC-1 plasmid ...    37   0.63
FN357348_10(FN357348|pid:none) Schistosoma mansoni genome sequen...    37   0.82
CR382131_930(CR382131|pid:none) Yarrowia lipolytica strain CLIB1...    37   0.82
CP000884_3257(CP000884|pid:none) Delftia acidovorans SPH-1, comp...    35   1.8
BC038498_1(BC038498|pid:none) Mus musculus transmembrane emp24 d...    35   1.8
AK102604_1(AK102604|pid:none) Oryza sativa Japonica Group cDNA c...    34   4.1
EU262986_1(EU262986|pid:none) Myxococcus fulvus strain 0159-5 ch...    34   4.1
EU262988_1(EU262988|pid:none) Myxococcus fulvus strain 0189-5 ch...    34   4.1
EU262987_1(EU262987|pid:none) Corallococcus coralloides strain 0...    34   5.3
BT063434_1(BT063434|pid:none) Zea mays full-length cDNA clone ZM...    33   9.0
EU564904_1(EU564904|pid:none) Uncultured soil bacterium clone gl...    33   9.0
DQ864957_1(DQ864957|pid:none) Pfiesteria piscicida clone Ppi-115...    33   9.0
BT067302_1(BT067302|pid:none) Zea mays full-length cDNA clone ZM...    33   9.0
AC159435_20(AC159435|pid:none) Trypanosoma brucei chromosome 8 c...    33   9.0
BT066356_1(BT066356|pid:none) Zea mays full-length cDNA clone ZM...    33   9.0
BT036383_1(BT036383|pid:none) Zea mays full-length cDNA clone ZM...    33   9.0

>BT046693_1(BT046693|pid:none) Salmo salar clone ssal-eve-549-119
           Transmembrane emp24 domain-containing protein 2
           precursor putative mRNA, complete cds.
          Length = 201

 Score =  132 bits (332), Expect = 1e-29
 Identities = 67/198 (33%), Positives = 117/198 (59%), Gaps = 6/198 (3%)
 Frame = +1

Query: 52  CILVTLFLIGSSSALTLQVEPKSQECFYNFIESGKTSLLLYQVIRGGLLDINVKLTDPKG 231
           C+++   L  ++S   + ++  ++ECF+  + SG    L+++V  GG LDI+V++T P G
Sbjct: 7   CMVILAMLSATASGYFVSIDAHAEECFFERVNSGTKMGLMFEVAEGGFLDIDVEITGPDG 66

Query: 232 NTIFERLHFDTQMKGKQSFTAGESGAYKVCFNNEMSRFTAKVVTFTWASEEEGVKEVAKG 411
             I++    D +  GK S  A   G YK CF+N+MS  T K+V FT      G+ E  KG
Sbjct: 67  KQIYKG---DRESSGKYSVAAHMDGTYKFCFSNKMSTMTPKIVMFTI-----GIGEAPKG 118

Query: 412 DSI------TPMDQSVQKIERVLQSVIHEQKKLRYREQANRDTSESTNARVVWWTIAEVI 573
           D +        +++ + ++   + +V HEQ+ +  RE+ +R  +++TN+RVV W+  E +
Sbjct: 119 DGMETEAHQNKLEEMINELAVAMTAVKHEQEYMEVRERIHRAINDNTNSRVVLWSFFEAL 178

Query: 574 VLVVMGVGQIWYLRKWFD 627
           VLV M +GQI+YL+++F+
Sbjct: 179 VLVAMTLGQIYYLKRFFE 196

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 899,813,490
Number of extensions: 14708565
Number of successful extensions: 37577
Number of sequences better than 10.0: 300
Number of HSP's gapped: 37265
Number of HSP's successfully gapped: 301
Length of query: 242
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 117
Effective length of database: 646,610,989
Effective search space: 75653485713
Effective search space used: 75653485713
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.98  gvh: 0.75  alm: 0.24  top: -0.03  tms: 0.07  mit: 0.31  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.30  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.28  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 1.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: extracellular, including cell wall
	 32.0 %: plasma membrane
	 20.0 %: endoplasmic reticulum
	 12.0 %: Golgi

>> prediction for Contig-U14708-1 is exc
VS (DIR, S) 6
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0