NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | 利用許諾 | ヘルプ
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14702-1
Contig ID Contig-U14702-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Contig-U14702-1Q.Seq.d
AATAATTTGAAAAAGATACTTAAAAAAAAAAAAAGAAAAGAAAATGACAA
CATTAGTTTATGCATATGCAATTTTACTTGCAATTGGTGGGTTGATTGGT
TACTTAAAAGCAAATTCAATGCCATCTCTTATCATGGGTTTACTTAGTGG
TTTATTAGTTGGTTATAGTGCTAACCTTACTACCACCAATAAAAAGAATG
GTACACAATTAACAATGGCATTATCATTGGTACTTTTAATTATAATGGGA
ATGAGATTTGTAAATTCTGGTAAATTTTTCCCTGCTGGTTTAGTATCTGT
CTTTAGTGCAATAATATTAGTAAAGTCTTTTTTATCACTTTCCCAAATGT
AATTGAATTCAATCATACTCCAAAACAAAAGAAAAAGAATTTAAAAATTA
GAATACAAGAAGAACAAAATGAAATAAATAGAAAACAAGGTATTGAAATT
GATGAAATTAAAAATTTTAAAATATATAGATAATATTTTTAAAAAAAATA
AAAAATCTCAATTACAAATGGGAAATAATAAAAAAAAAAAAAAAAAA
Gap no gap
Contig length 547
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1905716
End point 1905169
Strand (PLUS/MINUS) MINUS
Number of clones 5
Number of EST 6
Link to clone list U14702
List of clone(s) 

est1=VSJ283Z,-10,494
est2=SSA701F,1,198
est3=SSH438E,1,548
est4=VHA730Z,5,518
est5=VSK419F,25,381
est6=VSK419Z,25,351
Translated Amino Acid sequence 
ii*KRYLKKKKEKKMTTLVYAYAILLAIGGLIGYLKANSMPSLIMGLLSGLLVGYSANLT
TTNKKNGTQLTMALSLVLLIIMGMRFVNSGKFFPAGLVSVFSAIILVKSFLSLSQM*lns
iilqnkrkri*kleykknkmk*ienkvlklmklkilkyidnifkknkksqlqmgnnkkkk
kk
Translated Amino Acid sequence (All Frames) 
Frame A:
nnlkkilkkkkrkendnislcicnftcnwwvdwllkskfnaisyhgft*wfiswl*c*py
yhq*kewytinngiiigtfnyngneickfw*ifpcwfsicl*cnniskvffitfpnvief
nhtpkqkkknlkiriqeeqneinrkqgieideiknfkiyr*yf*kk*kisitngk**kkk
kk


Frame B:
ii*KRYLKKKKEKKMTTLVYAYAILLAIGGLIGYLKANSMPSLIMGLLSGLLVGYSANLT
TTNKKNGTQLTMALSLVLLIIMGMRFVNSGKFFPAGLVSVFSAIILVKSFLSLSQM*lns
iilqnkrkri*kleykknkmk*ienkvlklmklkilkyidnifkknkksqlqmgnnkkkk
kk


Frame C:
*fekdt*kkkkkrk*qh*fmhmqfylqlvg*lvt*kqiqchllswvylvvy*lvivltll
ppikrmvhn*qwhyhwyf*l*we*dl*ilvnfsllv*ylslvq*y**slfyhfpkcn*iq
sysktkekefkn*ntrrtk*nk*ktry*n**n*kf*ni*iiflkkiknlnykweiikkkk
k
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14702-1 (Contig-U14702-1Q)
/CSM_Contig/Contig-U14702-1Q.Seq.d
         (547 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Conti...   757  0.0
Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U12590-1 (Contig-U12590-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U06332-1 (Contig-U06332-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U05147-1 (Contig-U05147-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U04842-1 (Contig-U04842-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14003-1 (Contig-U14003-1Q) /CSM_Contig/Conti...    36  0.038
Contig-U10739-1 (Contig-U10739-1Q) /CSM_Contig/Conti...    36  0.038

>Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Contig-U14702-1Q.Seq.d
          Length = 547

 Score =  757 bits (382), Expect = 0.0
 Identities = 382/382 (100%)
 Strand = Plus / Plus

                                                                       
Query: 35  gaaaagaaaatgacaacattagtttatgcatatgcaattttacttgcaattggtgggttg 94
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 35  gaaaagaaaatgacaacattagtttatgcatatgcaattttacttgcaattggtgggttg 94

                                                                       
Query: 95  attggttacttaaaagcaaattcaatgccatctcttatcatgggtttacttagtggttta 154
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95  attggttacttaaaagcaaattcaatgccatctcttatcatgggtttacttagtggttta 154

                                                                       
Query: 155 ttagttggttatagtgctaaccttactaccaccaataaaaagaatggtacacaattaaca 214
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 ttagttggttatagtgctaaccttactaccaccaataaaaagaatggtacacaattaaca 214

                                                                       
Query: 215 atggcattatcattggtacttttaattataatgggaatgagatttgtaaattctggtaaa 274
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 atggcattatcattggtacttttaattataatgggaatgagatttgtaaattctggtaaa 274

                                                                       
Query: 275 tttttccctgctggtttagtatctgtctttagtgcaataatattagtaaagtctttttta 334
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 tttttccctgctggtttagtatctgtctttagtgcaataatattagtaaagtctttttta 334

                                                                       
Query: 335 tcactttcccaaatgtaattgaattcaatcatactccaaaacaaaagaaaaagaatttaa 394
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tcactttcccaaatgtaattgaattcaatcatactccaaaacaaaagaaaaagaatttaa 394

                                 
Query: 395 aaattagaatacaagaagaaca 416
           ||||||||||||||||||||||
Sbjct: 395 aaattagaatacaagaagaaca 416


 Score = 48.1 bits (24), Expect = 1e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 506 tctcaattacaaatgggaaataat 529
           ||||||||||||||||||||||||
Sbjct: 506 tctcaattacaaatgggaaataat 529


 Score = 42.1 bits (21), Expect = 6e-04
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 1  aataatttgaaaaagatactt 21
          |||||||||||||||||||||
Sbjct: 1  aataatttgaaaaagatactt 21


>Contig-U04264-1 (Contig-U04264-1Q) /CSM_Contig/Contig-U04264-1Q.Seq.d
          Length = 848

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 377 aaaagaaaaagaatttaaaaatta 400
           |||||||| |||||||||||||||
Sbjct: 191 aaaagaaacagaatttaaaaatta 214


>Contig-U14670-1 (Contig-U14670-1Q) /CSM_Contig/Contig-U14670-1Q.Seq.d
          Length = 825

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 377 aaaagaaaaagaatttaaa 395
           |||||||||||||||||||
Sbjct: 349 aaaagaaaaagaatttaaa 367


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8092
Number of Sequences: 6905
Number of extensions: 8092
Number of successful extensions: 1161
Number of sequences better than 10.0: 316
length of query: 547
length of database: 5,674,871
effective HSP length: 16
effective length of query: 531
effective length of database: 5,564,391
effective search space: 2954691621
effective search space used: 2954691621
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.28
Homology vs DNA 
Query= Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Contig-U14702-1Q.Seq.d
         (547 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU038223) Dictyostelium discoideum slug cDNA, clone SSH438.      646   0.0    2
(BJ436842) Dictyostelium discoideum cDNA clone:ddv32l07, 3' ...   646   0.0    1
(AU269695) Dictyostelium discoideum vegetative cDNA clone:VS...   634   e-179  2
(AU271160) Dictyostelium discoideum vegetative cDNA clone:VS...   640   e-179  1
(AU271161) Dictyostelium discoideum vegetative cDNA clone:VS...   571   e-159  1
(AU072722) Dictyostelium discoideum slug cDNA, clone SSA701.      299   2e-83  2
(CU468224) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    48   0.33   1
(CU326378) S.lycopersicum DNA sequence *** SEQUENCING IN PRO...    48   0.33   1
(ET165833) CON_304 Tomato Genome SNP,Indel Search Library So...    48   0.33   1
(ET165759) CON_238 Tomato Genome SNP,Indel Search Library So...    48   0.33   1
(AC094527) Rattus norvegicus 5 BAC CH230-4L11 (Children's Ho...    46   1.3    1
(AM456531) Vitis vinifera contig VV78X013658.3, whole genome...    46   1.3    1
(AC152147) Dasypus novemcinctus clone VMRC5-398G7, WORKING D...    46   1.3    1
(AC094487) Rattus norvegicus clone CH230-4B23, *** SEQUENCIN...    46   1.3    1
(AQ745812) HS_2273_A1_B06_T7C CIT Approved Human Genomic Spe...    34   3.4    2
(AC200426) Pongo abelii BAC clone CH276-522E18 from chromoso...    44   5.2    1
(AC159108) Pan troglodytes BAC clone CH251-550P7 from chromo...    44   5.2    1
(CQ573017) Sequence 775 from Patent WO0171042.                     44   5.2    1
(CU467914) Pig DNA sequence from clone CH242-238F10 on chrom...    44   5.2    1
(AC186204) Canis Familiaris chromosome X, clone XX-300P9, co...    44   5.2    1
(AC150694) Bos taurus  BAC CH240-144A17 (Children's Hospital...    44   5.2    1
(AE014296) Drosophila melanogaster chromosome 3L, complete s...    44   5.2    1
(AC091127) Drosophila melanogaster 3L BAC RP98-27E18 (Roswel...    44   5.2    1
(AC010032) Drosophila melanogaster 3L BAC RP98-2N23 (Roswell...    44   5.2    1
(AL355476) Human DNA sequence from clone RP11-517O1 on chrom...    44   5.2    1
(AC156772) Rhinolophus ferrumequinum clone VMRC7-193N15, WOR...    44   5.2    1
(AC150653) Bos taurus clone CH240-226L9, WORKING DRAFT SEQUE...    44   5.2    1
(AC149560) Papio anubis clone RP41-278E20, WORKING DRAFT SEQ...    44   5.2    1
(AC116539) Drosophila melanogaster clone RP98-18E1, WORKING ...    44   5.2    1
(AC026085) Homo sapiens chromosome X clone RP11-517O1, WORKI...    44   5.2    1
(AC026084) Homo sapiens chromosome X clone RP11-477A22, WORK...    44   5.2    1
(AC218883) Pteropus vampyrus clone CH279-316A8, WORKING DRAF...    44   5.2    1
(AC216154) Equus caballus clone CH241-249J14, WORKING DRAFT ...    44   5.2    1
(AC215961) Procavia capensis clone CH280-196B1, WORKING DRAF...    44   5.2    1
(AC215739) Cavia porcellus clone CH234-182A19, WORKING DRAFT...    44   5.2    1
(AC215596) Oryctolagus cuniculus clone LB1-98O15, WORKING DR...    44   5.2    1
(AC213936) Equus caballus clone CH241-226I13, WORKING DRAFT ...    44   5.2    1
(AC211831) Chlorocebus aethiops clone CH252-326K22, WORKING ...    44   5.2    1
(AC209142) Saimiri boliviensis boliviensis clone CH254-86G9,...    44   5.2    1
(AC207866) Spermophilus tridecemlineatus clone VMRC20-232J12...    44   5.2    1
(AC206802) Echinops telfairi clone CH238-381E3, WORKING DRAF...    44   5.2    1
(AC205743) Nomascus leucogenys leucogenys clone CH271-283P7,...    44   5.2    1
(AC204205) Spermophilus tridecemlineatus clone VMRC20-414J24...    44   5.2    1
(AC200386) Nomascus leucogenys leucogenys clone CH271-479O24...    44   5.2    1
(AC199840) Pan troglodytes chromosome X clone CH251-268H15, ...    44   5.2    1
(AC196348) Callicebus moloch clone LB5-65D17, WORKING DRAFT ...    44   5.2    1
(AC196334) Otolemur garnettii clone CH256-145J8, WORKING DRA...    44   5.2    1
(AC193834) Colobus guereza clone CH272-172D6, WORKING DRAFT ...    44   5.2    1
(AC190470) Rhinolophus ferrumequinum clone VMRC7-276B19, WOR...    44   5.2    1
(AC190068) Cavia porcellus clone CH234-118A4, WORKING DRAFT ...    44   5.2    1
(AC190001) Aotus nancymaae clone CH258-260M23, WORKING DRAFT...    44   5.2    1
(AC188336) Aotus nancymaae clone CH258-143M4, WORKING DRAFT ...    44   5.2    1
(AC186951) Loxodonta africana clone VMRC15-414C10, WORKING D...    44   5.2    1
(AC186247) Microcebus murinus clone CH257-166K1, WORKING DRA...    44   5.2    1
(AC186099) Microcebus murinus clone CH257-264A19, WORKING DR...    44   5.2    1
(AC186065) Canis familiaris chromosome X clone XX-152N8 map ...    44   5.2    1
(AC185393) Felis catus clone RP86-222N11, WORKING DRAFT SEQU...    44   5.2    1
(AC185166) Felis catus clone RP86-121A23, WORKING DRAFT SEQU...    44   5.2    1
(AC182527) Oryctolagus cuniculus clone LB1-147A21, WORKING D...    44   5.2    1
(AC175815) Rhinolophus ferrumequinum clone VMRC7-116J5, WORK...    44   5.2    1
(AC166890) Loxodonta africana clone VMRC15-222I3, WORKING DR...    44   5.2    1
(AC166882) Oryctolagus cuniculus clone LB1-5E23, WORKING DRA...    44   5.2    1
(AC166871) Oryctolagus cuniculus clone LB1-207H19, WORKING D...    44   5.2    1
(AC014121) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    44   5.2    1
(EJ868214) 1093018294719 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.2    1
(AM628289) Entamoeba dispar GSS, clone dispar28b09.q1k.            44   5.2    1
(EJ785615) 1093017314044 Global-Ocean-Sampling_GS-30-02-01-1...    44   5.2    1
(DX276117) OR_ABa0173O05.f OR_ABa Oryza ridleyi genomic clon...    44   5.2    1
(DU225853) 1098574203520 CHORI-243 Ovis aries genomic clone ...    44   5.2    1
(CO648129) ILLUMIGEN_MCQ_41411 Katze_MMPB2 Macaca mulatta cD...    44   5.2    1
(ER586982) 1093015882403 Global-Ocean-Sampling_GS-36-01-01-2...    38   9.0    2

>(AU038223) Dictyostelium discoideum slug cDNA, clone SSH438.
          Length = 548

 Score =  646 bits (326), Expect(2) = 0.0
 Identities = 326/326 (100%)
 Strand = Plus / Plus


Query: 45  tgacaacattagtttatgcatatgcaattttacttgcaattggtgggttgattggttact 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 45  tgacaacattagtttatgcatatgcaattttacttgcaattggtgggttgattggttact 104


Query: 105 taaaagcaaattcaatgccatctcttatcatgggtttacttagtggtttattagttggtt 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 105 taaaagcaaattcaatgccatctcttatcatgggtttacttagtggtttattagttggtt 164


Query: 165 atagtgctaaccttactaccaccaataaaaagaatggtacacaattaacaatggcattat 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 165 atagtgctaaccttactaccaccaataaaaagaatggtacacaattaacaatggcattat 224


Query: 225 cattggtacttttaattataatgggaatgagatttgtaaattctggtaaatttttccctg 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 cattggtacttttaattataatgggaatgagatttgtaaattctggtaaatttttccctg 284


Query: 285 ctggtttagtatctgtctttagtgcaataatattagtaaagtcttttttatcactttccc 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ctggtttagtatctgtctttagtgcaataatattagtaaagtcttttttatcactttccc 344


Query: 345 aaatgtaattgaattcaatcatactc 370
           ||||||||||||||||||||||||||
Sbjct: 345 aaatgtaattgaattcaatcatactc 370

 Score = 42.1 bits (21), Expect(2) = 0.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus


Query: 1  aataatttgaaaaagatactt 21
          |||||||||||||||||||||
Sbjct: 1  aataatttgaaaaagatactt 21

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 419,528,107
Number of extensions: 23543500
Number of successful extensions: 1822719
Number of sequences better than 10.0: 72
Length of query: 547
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 524
Effective length of database: 93,106,754,628
Effective search space: 48787939425072
Effective search space used: 48787939425072
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14702-1 (Contig-U14702-1Q) /CSM_Contig/Contig-U14702-1Q.Seq.d
         (547 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK340008_1(AK340008|pid:none) Acyrthosiphon pisum ACYPI002634 mR...    62   1e-08
BT082874_1(BT082874|pid:none) Anoplopoma fimbria clone afim-evh-...    60   3e-08
AK008495_1(AK008495|pid:none) Mus musculus adult male small inte...    57   3e-07
(Q9CQN6) RecName: Full=Transmembrane protein 14C;  &AK003891_1(A...    57   3e-07
AK223462_1(AK223462|pid:none) Homo sapiens mRNA for transmembran...    56   5e-07
(Q5R751) RecName: Full=Transmembrane protein 14C;  &CR860267_1(C...    54   3e-06
(Q924P2) RecName: Full=Transmembrane protein 14C; AltName: Full=...    54   3e-06
(Q9W1K0) RecName: Full=UPF0136 membrane protein CG5532;  &AE0135...    54   3e-06
BC122294_1(BC122294|pid:none) Danio rerio zgc:153439, mRNA (cDNA...    53   6e-06
CP000806_435(CP000806|pid:none) Cyanothece sp. ATCC 51142 circul...    53   6e-06
BT082648_1(BT082648|pid:none) Anoplopoma fimbria clone afim-evh-...    52   1e-05
(Q9Y6G1) RecName: Full=Transmembrane protein 14A;  &AF078864_1(A...    52   1e-05
(P56983) RecName: Full=Transmembrane protein 14A;  &BC034768_1(B...    51   2e-05
AX969419_1(AX969419|pid:none) Sequence 222 from Patent EP1104808.      50   3e-05
CP000117_394(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    48   1e-04
AK017734_1(AK017734|pid:none) Mus musculus 8 days embryo whole b...    47   2e-04
DQ443434_1(DQ443434|pid:none) Bombyx mori transmembrane protein ...    47   3e-04
(Q9NUH8) RecName: Full=Transmembrane protein 14B;  &AL024498_1(A...    46   5e-04
AL606690_17(AL606690|pid:none) Oryza sativa genomic DNA, chromos...    45   0.001
(A8MWL7) RecName: Full=Transmembrane protein 14D;                      45   0.002
AX969394_1(AX969394|pid:none) Sequence 197 from Patent EP1104808.      45   0.002
AK294152_1(AK294152|pid:none) Homo sapiens cDNA FLJ58456 complet...    44   0.002
BC134220_1(BC134220|pid:none) Danio rerio zgc:163080, mRNA (cDNA...    44   0.003
BC001033_1(BC001033|pid:none) Homo sapiens transmembrane protein...    43   0.005
BC007080_1(BC007080|pid:none) Homo sapiens transmembrane protein...    43   0.005
BT082558_1(BT082558|pid:none) Anoplopoma fimbria clone afim-evh-...    43   0.005
AY050422_1(AY050422|pid:none) Arabidopsis thaliana AT3g43520/T18...    43   0.006
AY086820_1(AY086820|pid:none) Arabidopsis thaliana clone 281 mRN...    43   0.006
CP001037_3199(CP001037|pid:none) Nostoc punctiforme PCC 73102, c...    42   0.008
CP000239_2327(CP000239|pid:none) Synechococcus sp. JA-3-3Ab, com...    42   0.008
DQ886873_1(DQ886873|pid:none) Argas monolakensis transmembrane p...    41   0.018
AK176567_1(AK176567|pid:none) Arabidopsis thaliana mRNA, complet...    41   0.018
AM398681_385(AM398681|pid:none) Flavobacterium psychrophilum JIP...    39   0.11
EU971920_1(EU971920|pid:none) Zea mays clone 372369 hypothetical...    39   0.11
BC081484_1(BC081484|pid:none) Danio rerio zgc:103519, mRNA (cDNA...    38   0.20
EF148250_1(EF148250|pid:none) Populus trichocarpa x Populus delt...    38   0.20
AE017308_339(AE017308|pid:none) Mycoplasma mobile 163K complete ...    38   0.20
AM270352_17(AM270352|pid:none) Aspergillus niger contig An15c025...    38   0.20
AC084319_4(AC084319|pid:none) Oryza sativa chromosome 3 BAC OSJN...    38   0.20
BT051376_1(BT051376|pid:none) Medicago truncatula clone MTYF1_F2...    37   0.26
BT065671_1(BT065671|pid:none) Zea mays full-length cDNA clone ZM...    37   0.26
AM457243_1(AM457243|pid:none) Vitis vinifera contig VV78X040505....    37   0.33
AC079027_3(AC079027|pid:none) Arabidopsis thaliana chromosome 1 ...    36   0.57
BX908798_980(BX908798|pid:none) Parachlamydia-related symbiont U...    36   0.57
CR382125_269(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    36   0.57
AC133003_8(AC133003|pid:none) Oryza sativa chromosome 3 BAC OSJN...    35   0.97
CR954206_488(CR954206|pid:none) Ostreococcus tauri strain OTTH05...    35   0.97
EU961268_1(EU961268|pid:none) Zea mays clone 234126 hypothetical...    35   0.97
CP000393_3543(CP000393|pid:none) Trichodesmium erythraeum IMS101...    35   1.3
CP000133_672(CP000133|pid:none) Rhizobium etli CFN 42, complete ...    30   1.3
EU967426_1(EU967426|pid:none) Zea mays clone 302762 unknown mRNA.      35   1.7
EU975218_1(EU975218|pid:none) Zea mays clone 484722 hypothetical...    33   4.8
CP001074_750(CP001074|pid:none) Rhizobium etli CIAT 652, complet...    28   5.9
CP001185_1676(CP001185|pid:none) Thermosipho africanus TCF52B, c...    33   6.3
CP001191_341(CP001191|pid:none) Rhizobium leguminosarum bv. trif...    28   7.6
(O64847) RecName: Full=UPF0136 membrane protein At2g26240;  &A84...    32   8.2

>AK340008_1(AK340008|pid:none) Acyrthosiphon pisum ACYPI002634 mRNA,
           clone: 609I11, complete cds, full-insert cDNA sequence
           based on the ESTs (5'-EST:FF333364, 3'-EST:FF334695).
          Length = 109

 Score = 61.6 bits (148), Expect = 1e-08
 Identities = 34/73 (46%), Positives = 48/73 (65%)
 Frame = +2

Query: 107 KANSMPSLIMGLLSGLLVGYSANLTTTNKKNGTQLTMALSLVLLIIMGMRFVNSGKFFPA 286
           KA S+PSL  GLL G L+GY A  TT N  N   L++  S VL  IMG+R++NSGK  PA
Sbjct: 24  KAASIPSLSAGLLFGSLLGYGAYQTTKNPNN-LALSLGTSAVLGGIMGVRYLNSGKVMPA 82

Query: 287 GLVSVFSAIILVK 325
           G+++  S  ++++
Sbjct: 83  GILAALSLAMVIR 95

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 578,197,361
Number of extensions: 9248519
Number of successful extensions: 32232
Number of sequences better than 10.0: 56
Number of HSP's gapped: 32214
Number of HSP's successfully gapped: 59
Length of query: 182
Length of database: 1,051,180,864
Length adjustment: 121
Effective length of query: 61
Effective length of database: 659,557,225
Effective search space: 40232990725
Effective search space used: 40232990725
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.94  gvh: 0.55  alm: 0.26  top: 0.07  tms: 0.27  mit: 0.44  mip: 0.00
 nuc: 0.04  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 36.0 %: endoplasmic reticulum
	 24.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  8.0 %: plasma membrane
	  8.0 %: nuclear
	  8.0 %: cytoplasmic
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14702-1 is end
VS (DIR, S) 2
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0