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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14695-1
Contig ID Contig-U14695-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Contig-U14695-1Q.Seq.d
AAGAACTAAAATTAAAATAAAAATAGACGTATACTAGAATGTTAAGATCA
AAGATTTTACCACAAATTTTAAATCAAGCCATAAACAATACAGATACTAA
AGGTGTATTATTAATGAAAGATGATGGCTCATTAATTGCATGTTCAGATG
CTACAACATCATCACACAATACCTCAAAAATTGTTGCAGCCATTACTTCA
AATATTTGGACTGCTTATAATAGAAATTCAGATTTACAATATCAATTAAT
TGATTGTGAAGAGGGAAGATTTGTAATTACAAGAGTTGCATCTCTTTTAT
TATGTGTATATAGCGATATCAATACTGAATTTGGTTTATTAAAATTAAAG
ACACAAAAATTACGTGAATATTTAGAAGAACCACTTAGTAAAGTAGAACA
CGTACAATAAATTATATATAGTAATATAGTGTAAAAAAAAAATAAAATAA
AATAAAAAAAAAAATTATATAATAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAA
Gap no gap
Contig length 509
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 4909784
End point 4909274
Strand (PLUS/MINUS) MINUS
Number of clones 7
Number of EST 8
Link to clone list U14695
List of clone(s) 

est1=VHK647F,1,467
est2=VHP607F,1,479
est3=VHP607Z,1,466
est4=SSF422E,8,510
est5=SSJ164E,9,510
est6=SSI220F,11,450
est7=SSM552F,27,474
est8=SSA250E,29,476
Translated Amino Acid sequence 
elklk*k*TYTRMLRSKILPQILNQAINNTDTKGVLLMKDDGSLIACSDATTSSHNTSKI
VAAITSNIWTAYNRNSDLQYQLIDCEEGRFVITRVASLLLCVYSDINTEFGLLKLKTQKL
REYLEEPLSKVEHVQ*iiysniv*kknkik*kkklynkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
kn*n*nknrrilec*dqrfyhkf*ikp*tiqilkvyy**kmmah*lhvqmlqhhhtipqk
llqpllqifglliieiqiynin*livkredl*lqelhlfyyvyiaisilnlvy*n*rhkn
yvni*knhlvk*ntynklyivi*ckkkik*nkkknyiikkkkkkkkkkk


Frame B:
rtkikikidvy*nvkikdfttnfksshkqyry*rciiner*wlincmfrcyniitqylkn
ccshyfkyldcl**kfrftisin*l*rgkicnykscisfimci*ryqy*iwfikikdtki
t*ifrrtt**srtrtinyi**ysvkkk*nkikkkii**kkkkkkkkkkk


Frame C:
elklk*k*TYTRMLRSKILPQILNQAINNTDTKGVLLMKDDGSLIACSDATTSSHNTSKI
VAAITSNIWTAYNRNSDLQYQLIDCEEGRFVITRVASLLLCVYSDINTEFGLLKLKTQKL
REYLEEPLSKVEHVQ*iiysniv*kknkik*kkklynkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14695-1 (Contig-U14695-1Q)
/CSM_Contig/Contig-U14695-1Q.Seq.d
         (509 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Conti...   856  0.0
Contig-U14672-1 (Contig-U14672-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U14520-1 (Contig-U14520-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U12499-1 (Contig-U12499-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U10056-1 (Contig-U10056-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U06100-1 (Contig-U06100-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U02855-1 (Contig-U02855-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U01374-1 (Contig-U01374-1Q) /CSM_Contig/Conti...    38  0.009
Contig-U13673-1 (Contig-U13673-1Q) /CSM_Contig/Conti...    36  0.035
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti...    36  0.035

>Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Contig-U14695-1Q.Seq.d
          Length = 509

 Score =  856 bits (432), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aagaactaaaattaaaataaaaatagacgtatactagaatgttaagatcaaagattttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagaactaaaattaaaataaaaatagacgtatactagaatgttaagatcaaagattttac 60

                                                                       
Query: 61  cacaaattttaaatcaagccataaacaatacagatactaaaggtgtattattaatgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cacaaattttaaatcaagccataaacaatacagatactaaaggtgtattattaatgaaag 120

                                                                       
Query: 121 atgatggctcattaattgcatgttcagatgctacaacatcatcacacaatacctcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgatggctcattaattgcatgttcagatgctacaacatcatcacacaatacctcaaaaa 180

                                                                       
Query: 181 ttgttgcagccattacttcaaatatttggactgcttataatagaaattcagatttacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttgcagccattacttcaaatatttggactgcttataatagaaattcagatttacaat 240

                                                                       
Query: 241 atcaattaattgattgtgaagagggaagatttgtaattacaagagttgcatctcttttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaattaattgattgtgaagagggaagatttgtaattacaagagttgcatctcttttat 300

                                                                       
Query: 301 tatgtgtatatagcgatatcaatactgaatttggtttattaaaattaaagacacaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgtgtatatagcgatatcaatactgaatttggtttattaaaattaaagacacaaaaat 360

                                                                       
Query: 361 tacgtgaatatttagaagaaccacttagtaaagtagaacacgtacaataaattatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tacgtgaatatttagaagaaccacttagtaaagtagaacacgtacaataaattatatata 420

                       
Query: 421 gtaatatagtgt 432
           ||||||||||||
Sbjct: 421 gtaatatagtgt 432


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 241 atcaattaattgat 254
           ||||||||||||||
Sbjct: 254 atcaattaattgat 241


>Contig-U14672-1 (Contig-U14672-1Q) /CSM_Contig/Contig-U14672-1Q.Seq.d
          Length = 329

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 7   taaaattaaaataaaaata 25
           |||||||||||||||||||
Sbjct: 250 taaaattaaaataaaaata 268


 Score = 30.2 bits (15), Expect = 2.2
 Identities = 18/19 (94%)
 Strand = Plus / Plus

                              
Query: 7   taaaattaaaataaaaata 25
           |||||| ||||||||||||
Sbjct: 256 taaaataaaaataaaaata 274


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 8   aaaattaaaataaaaata 25
           ||||||||||| ||||||
Sbjct: 245 aaaattaaaattaaaata 262


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 7   taaaattaaaataaaaat 24
           |||||| |||||||||||
Sbjct: 232 taaaataaaaataaaaat 249


 Score = 28.2 bits (14), Expect = 8.6
 Identities = 17/18 (94%)
 Strand = Plus / Plus

                             
Query: 8   aaaattaaaataaaaata 25
           |||| |||||||||||||
Sbjct: 227 aaaaataaaataaaaata 244


>Contig-U14520-1 (Contig-U14520-1Q) /CSM_Contig/Contig-U14520-1Q.Seq.d
          Length = 1626

 Score = 38.2 bits (19), Expect = 0.009
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                             
Query: 7  taaaattaaaataaaaata 25
          |||||||||||||||||||
Sbjct: 58 taaaattaaaataaaaata 40


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,163
Number of Sequences: 6905
Number of extensions: 11163
Number of successful extensions: 1817
Number of sequences better than 10.0: 671
length of query: 509
length of database: 5,674,871
effective HSP length: 16
effective length of query: 493
effective length of database: 5,564,391
effective search space: 2743244763
effective search space used: 2743244763
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.28
Homology vs DNA 
Query= Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Contig-U14695-1Q.Seq.d
         (509 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ427359) Dictyostelium discoideum cDNA clone:ddv62m02, 5' ...   856   0.0    1
(BJ424433) Dictyostelium discoideum cDNA clone:ddv52m12, 5' ...   856   0.0    1
(BJ446260) Dictyostelium discoideum cDNA clone:ddv62m02, 3' ...   807   0.0    1
(C25602) Dictyostelium discoideum slug cDNA, clone SSA250.        468   0.0    3
(AU074948) Dictyostelium discoideum slug cDNA, clone SSM552.      476   e-130  1
(AU073738) Dictyostelium discoideum slug cDNA, clone SSI220.      476   e-130  1
(AU072923) Dictyostelium discoideum slug cDNA, clone SSF422.      476   e-130  1
(C90800) Dictyostelium discoideum slug cDNA, clone SSJ164.        347   e-108  3
(C92990) Dictyostelium discoideum slug cDNA, clone SSF422.        272   1e-68  1
(AC152981) Mus musculus 10 BAC RP23-154M15 (Roswell Park Can...    48   0.009  5
(AC230211) Bos taurus clone CH240-518G9, WORKING DRAFT SEQUE...    52   0.020  1
(AC230208) Bos taurus clone CH240-518E16, WORKING DRAFT SEQU...    52   0.020  1
(AC149433) Muntiacus muntjak vaginalis clone CH244-249N12, W...    36   0.029  5
(AL844509) Plasmodium falciparum chromosome 13.                    38   0.046  12
(AC024621) Homo sapiens chromosome 18, clone RP11-425M2, com...    38   0.060  3
(AC110043) Mus musculus chromosome 10, clone RP23-296O20, co...    48   0.31   1
(AC150842) Medicago truncatula chromosome 8 clone mth2-66f12...    48   0.31   1
(AP001448) Homo sapiens genomic DNA, chromosome 18q22 clone:...    38   0.33   4
(AC178571) Strongylocentrotus purpuratus clone R3-3027A24, W...    38   0.33   4
(AC202650) Nomascus leucogenys leucogenys clone CH271-330H6,...    40   0.38   2
(CU611035) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   0.62   5
(AM445521) Vitis vinifera contig VV78X277837.11, whole genom...    36   0.76   2
(AX344656) Sequence 81 from Patent WO0200927.                      46   1.2    1
(BX538351) Cryptosporidium parvum chromosome 6, complete seq...    46   1.2    1
(CU928340) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.2    1
(AG293144) Mus musculus molossinus DNA, clone:MSMg01-068L10....    46   1.2    1
(AC094586) Rattus norvegicus clone CH230-4B11, WORKING DRAFT...    38   1.4    5
(AC158954) Mus musculus chromosome 15, clone RP23-213P14, co...    44   1.5    2
(DX414571) MUGQ_CH252P023C09Sp6_GL358_045 CHORI-252 Vervet M...    42   1.5    2
(BV658532) S215P6344RD7.T0 Clara Pan troglodytes troglodytes...    38   1.8    2
(EK419275) 1095515491065 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.9    2
(EJ164222) 1092344059318 Global-Ocean-Sampling_GS-27-01-01-1...    42   2.1    2
(DY890495) CeleSEQ9519 Cunninghamella elegans pBluescript (E...    40   2.1    2
(AC094437) Rattus norvegicus clone CH230-4E21, *** SEQUENCIN...    32   2.3    2
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    38   2.3    7
(AC181741) Strongylocentrotus purpuratus clone R3-1037H04, W...    32   2.3    2
(AC224507) Bos taurus clone CH240-483B4, WORKING DRAFT SEQUE...    42   2.4    4
(AC127703) Rattus norvegicus clone CH230-311B19, WORKING DRA...    32   2.4    2
(AL034560) Plasmodium falciparum MAL3P8.                           38   2.4    7
(AL031747) Plasmodium falciparum DNA from MAL1P4.                  36   2.8    5
(AE017308) Mycoplasma mobile 163K complete genome.                 38   2.8    11
(EU010376) Philophylla fossata 16S ribosomal RNA gene, parti...    38   3.0    2
(AC163541) Bos taurus clone CH240-139F8, *** SEQUENCING IN P...    44   3.0    3
(AC123681) Mus musculus chromosome 15, clone RP23-287O20, co...    44   3.1    3
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    32   3.8    8
(AP010278) Lotus japonicus genomic DNA, chromosome 2, clone:...    40   3.9    3
(DD010736) Diagnosis of known genetic Parameters within the ...    42   4.1    6
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...    40   4.3    7
(BX005377) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    38   4.3    4
(BX005307) Zebrafish DNA sequence from clone DKEY-235F19 in ...    38   4.3    4
(AC105048) Homo sapiens chromosome 18, clone RP11-256H12, co...    42   4.5    2
(AC158154) Mus musculus chromosome 3 clone RP23-152I20 map 3...    36   4.5    3
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   4.6    10
(AL606982) Mouse DNA sequence from clone RP23-354C15 on chro...    44   4.8    1
(AC163104) Mus musculus BAC clone RP23-332A4 from chromosome...    44   4.8    1
(AC122421) Mus musculus BAC clone RP24-169J24 from chromosom...    44   4.8    1
(DL005648) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     44   4.8    1
(CS459573) Sequence 54 from Patent WO2006117596.                   44   4.8    1
(U49332) Dictyostelium discoideum 150-kD protein (cluA) mRNA...    44   4.8    1
(AM910986) Plasmodium knowlesi strain H chromosome 4, comple...    44   4.8    1
(AP002774) Homo sapiens genomic DNA, chromosome 11q clone:RP...    44   4.8    1
(AL158155) Human DNA sequence from clone RP11-397D12 on chro...    44   4.8    1
(AC126751) Homo sapiens chromosome 5 clone CTD-2224K20, comp...    44   4.8    1
(AC113415) Homo sapiens chromosome 5 clone RP11-55N10, compl...    44   4.8    1
(AC112206) Homo sapiens chromosome 5 clone RP11-83M16, compl...    44   4.8    1
(AC106798) Homo sapiens chromosome 5 clone RP11-434D9, compl...    44   4.8    1
(AC098680) Homo sapiens BAC clone RP11-600L4 from 4, complet...    44   4.8    1
(AC092155) Homo sapiens BAC clone RP11-312H10 from 2, comple...    44   4.8    1
(AC140820) Homo sapiens chromosome 5 clone RP11-745G20, WORK...    44   4.8    1
(AC111377) Rattus norvegicus clone CH230-123A5, WORKING DRAF...    44   4.8    1
(CU695144) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   4.8    1
(AC073966) Homo sapiens chromosome 2 clone RP11-52F10, WORKI...    44   4.8    1
(AC068041) Homo sapiens chromosome 11 clone RP11-643E23, WOR...    44   4.8    1
(AC060833) Homo sapiens chromosome 4 clone RP11-556F3, WORKI...    44   4.8    1
(AC037436) Homo sapiens chromosome 3 clone RP11-190I5 map 3,...    44   4.8    1
(AC221810) Bos taurus clone CH240-384O7, WORKING DRAFT SEQUE...    44   4.8    1
(AC165598) Bos taurus clone CH240-169J8, WORKING DRAFT SEQUE...    44   4.8    1
(AC024283) Homo sapiens clone RP11-20O4, WORKING DRAFT SEQUE...    44   4.8    1
(AC023942) Homo sapiens chromosome 2 clone RP11-770M9 map 2,...    44   4.8    1
(AC023234) Mus musculus strain C57BL6/J chromosome 6 clone R...    44   4.8    1
(EJ825375) 1093017557644 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.8    1
(EJ797211) 1093017407212 Global-Ocean-Sampling_GS-30-02-01-1...    44   4.8    1
(DU839159) MUGQ_CH252P017M08Sp6_GL309_020 CHORI-252 Vervet M...    44   4.8    1
(CU253753) Equus caballus GSS, BAC clone CH241-396O17, T7 en...    44   4.8    1
(CT959348) Equus caballus GSS, BAC clone CH241-35I24, T7 end...    44   4.8    1
(CT388400) Sus scrofa genomic clone CH242-393K4, genomic sur...    44   4.8    1
(EG993399) 031118NL19EMM00037F03 NL19EMM Neotyphodium lolii ...    44   4.8    1
(DB952457) Manihot esculenta mRNA, clone: CAS01_043_J05, 3'end.    44   4.8    1
(CV189136) aam01-15ms1-g01 Aam01 Acorus americanus cDNA clon...    44   4.8    1
(FK049769) XABT117714.g1 Gateway compatible cien cDNA librar...    44   4.8    1
(EX401755) GQ03503.B7_B18 GQ035 - Needles - End of season Pi...    44   4.8    1
(AP006628) Onion yellows phytoplasma OY-M DNA, complete genome.    44   4.8    1
(AE010299) Methanosarcina acetivorans str. C2A, complete gen...    44   4.8    1
(AC123180) Rattus norvegicus clone CH230-249D12, WORKING DRA...    40   5.0    5
(DL005646) NUCLEIC ACID PROBES AND NUCLEIC ACID ANALOG PROBES.     36   5.1    5
(CS459571) Sequence 52 from Patent WO2006117596.                   36   5.1    5
(AX392736) Sequence 26 from Patent WO0212526.                      36   5.1    4
(AR707083) Sequence 26 from patent US 6933145.                     36   5.1    4
(AY691421) Maconellicoccus hirsutus cytochrome b (cytb) gene...    34   5.3    3
(AY689437) Deerpox virus W-1170-84, complete genome.               40   5.4    5

>(BJ427359) Dictyostelium discoideum cDNA clone:ddv62m02, 5' end,
           single read.
          Length = 479

 Score =  856 bits (432), Expect = 0.0
 Identities = 432/432 (100%)
 Strand = Plus / Plus


Query: 1   aagaactaaaattaaaataaaaatagacgtatactagaatgttaagatcaaagattttac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   aagaactaaaattaaaataaaaatagacgtatactagaatgttaagatcaaagattttac 60


Query: 61  cacaaattttaaatcaagccataaacaatacagatactaaaggtgtattattaatgaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cacaaattttaaatcaagccataaacaatacagatactaaaggtgtattattaatgaaag 120


Query: 121 atgatggctcattaattgcatgttcagatgctacaacatcatcacacaatacctcaaaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 atgatggctcattaattgcatgttcagatgctacaacatcatcacacaatacctcaaaaa 180


Query: 181 ttgttgcagccattacttcaaatatttggactgcttataatagaaattcagatttacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 ttgttgcagccattacttcaaatatttggactgcttataatagaaattcagatttacaat 240


Query: 241 atcaattaattgattgtgaagagggaagatttgtaattacaagagttgcatctcttttat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atcaattaattgattgtgaagagggaagatttgtaattacaagagttgcatctcttttat 300


Query: 301 tatgtgtatatagcgatatcaatactgaatttggtttattaaaattaaagacacaaaaat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tatgtgtatatagcgatatcaatactgaatttggtttattaaaattaaagacacaaaaat 360


Query: 361 tacgtgaatatttagaagaaccacttagtaaagtagaacacgtacaataaattatatata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tacgtgaatatttagaagaaccacttagtaaagtagaacacgtacaataaattatatata 420


Query: 421 gtaatatagtgt 432
           ||||||||||||
Sbjct: 421 gtaatatagtgt 432

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 619,789,166
Number of extensions: 41689338
Number of successful extensions: 4055130
Number of sequences better than 10.0: 144
Length of query: 509
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 486
Effective length of database: 93,106,754,628
Effective search space: 45249882749208
Effective search space used: 45249882749208
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14695-1 (Contig-U14695-1Q) /CSM_Contig/Contig-U14695-1Q.Seq.d
         (509 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q3T132) RecName: Full=Mitogen-activated protein-binding protein...   103   3e-21
(B5FYY5) RecName: Full=Mitogen-activated protein-binding protein...   102   7e-21
BT082373_1(BT082373|pid:none) Anoplopoma fimbria clone afim-evh-...   100   2e-20
(Q7ZXB7) RecName: Full=Mitogen-activated protein-binding protein...   100   3e-20
(B5X7X4) RecName: Full=Mitogen-activated protein-binding protein...   100   3e-20
BT073461_1(BT073461|pid:none) Oncorhynchus mykiss clone omyk-evn...   100   3e-20
(Q6DEG4) RecName: Full=Mitogen-activated protein-binding protein...   100   3e-20
(Q63ZJ2) RecName: Full=Mitogen-activated protein-binding protein...    98   1e-19
(Q6DF40) RecName: Full=Mitogen-activated protein-binding protein...    96   4e-19
BT075186_1(BT075186|pid:none) Osmerus mordax clone omor-eva-504-...    95   9e-19
AK340649_1(AK340649|pid:none) Acyrthosiphon pisum ACYPI002727 mR...    92   7e-18
BT011055_1(BT011055|pid:none) Drosophila melanogaster RE43922 fu...    88   1e-16
AL355388_15(AL355388|pid:none) Human DNA sequence from clone RP1...    86   5e-16
FN357309_50(FN357309|pid:none) Schistosoma mansoni genome sequen...    66   6e-10
AX972687_1(AX972687|pid:none) Sequence 3490 from Patent EP1104808.     49   5e-05
BT074844_1(BT074844|pid:none) Osmerus mordax clone omor-eva-504-...    47   2e-04
BT077966_1(BT077966|pid:none) Lepeophtheirus salmonis Pacific fo...    41   0.015
AE000782_1481(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304...    38   0.12
CP001336_1082(CP001336|pid:none) Desulfitobacterium hafniense DC...    33   4.0
CP000237_342(CP000237|pid:none) Neorickettsia sennetsu strain Mi...    33   4.0
CP000081_455(CP000081|pid:none) Leishmania major chromosome 35, ...    33   5.2
AY964930_1(AY964930|pid:none) Eptatretus stoutii clone Es6VLRA.H...    32   6.8
AE017245_607(AE017245|pid:none) Mycoplasma synoviae 53, complete...    32   6.8

>(Q3T132) RecName: Full=Mitogen-activated protein-binding
           protein-interacting protein; AltName: Full=Roadblock
           domain-containing protein 3;  &(Q9Y2Q5) RecName: Fu
           &AF070659_1(AF070659|pid:none)
           &AL355388_16(AL355388|pid:none)
           &BC024190_1(BC024190|pid:none)
           &BC102146_1(BC102146|pid:none)
           &DQ896212_1(DQ896212|pid:none)
          Length = 125

 Score =  103 bits (256), Expect = 3e-21
 Identities = 59/126 (46%), Positives = 82/126 (65%), Gaps = 7/126 (5%)
 Frame = +3

Query: 39  MLRSKILPQILNQAINNTDTKGVLLMKDDGSLIACSDATTSSHNTSKIVAAITSNIWTAY 218
           MLR K L Q+L+QA N    +  LL+ ++GSL+A S    +    +++ AAI SNIW AY
Sbjct: 1   MLRPKALTQVLSQA-NTGGVQSTLLLNNEGSLLAYSGYGDTD---ARVTAAIASNIWAAY 56

Query: 219 NRNSD-------LQYQLIDCEEGRFVITRVASLLLCVYSDINTEFGLLKLKTQKLREYLE 377
           +RN +       L++ L+DC EGR  ITRVA+LLLC+Y+     FG+LK K Q L +YLE
Sbjct: 57  DRNGNQAFNEDNLKFILMDCMEGRVAITRVANLLLCMYAKETVGFGMLKAKAQALVQYLE 116

Query: 378 EPLSKV 395
           EPL++V
Sbjct: 117 EPLTQV 122

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 552,277,819
Number of extensions: 9093019
Number of successful extensions: 24905
Number of sequences better than 10.0: 23
Number of HSP's gapped: 24866
Number of HSP's successfully gapped: 23
Length of query: 169
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 50
Effective length of database: 666,030,343
Effective search space: 33301517150
Effective search space used: 33301517150
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.74  gvh: 0.46  alm: 0.34  top: 0.53  tms: 0.00  mit: 0.44  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.20  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: mitochondrial
	 20.0 %: cytoplasmic
	 16.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U14695-1 is mit
VS (DIR, S) 0
VH (FL, L) 2
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 5
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0