Contig-U14675-1
Contig ID Contig-U14675-1
Contig update 2002.12.18
Contig sequence
>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
AATTTCCCAAAAAACAAACAAATAAATAAATAAAATGGAAAATACAGCAA
CAAAAAAGAAATCAAAATTATGTGAAGTTTGTAATGTATCAAGACCAGTT
TTAAAAAGACCAAAAACTGGGGAAATGATTTGTAAAGAATGTTTCTACAC
AGTATTTGAAGATGAAATTCATCATACCATCATATCCAATAATTTATTTA
AAAGAGGTGATAGAGTTGCAATTGGTGCATCAGGTGGTAAAGATTCCACA
GTTTTAGCTGAAATTATGACATTATTAAATAAAAAATATGATTATGGTTT
AGATTTATTCCTTTTATCAATCGACGAAGGTATTACAGGTTATAGAGATG
ATTCATTAGAAACAGTTAAAAGAAATCAAGAACAATATCAAATTCCATTA
AAGATTTTATCATATAAAGAATTATATAATTGGACAATGGATGATATCGT
TAAAGAGATTGGATTAAAAGGTAATTGTACATTTTGTGGTGTATTTAGAA
GACAAGCACTTGATAGAGGTGCTGTAATGTTAAAAGCAAATAAAATTGTA
ACTGGTCACAACGCTGATGATATAGCTGAAACTGTATTAATGAATTTTAT
TACGTGGTGATATACCAAGATTACAAAGATGTGTAAATATTATAACAGGT
AGTGAAGGAGCATTACCAAGAAGTAAACCATTTAAATATACATATCAAAA
AGAGATTGTAATGTATGCATATTTTAAGAAATTAGATTATTTTTCAACAG
AGTGTATTTATGCACCAAATGCATACAGAGGACATGCAAGAGATTTCTTA
AAGGATTTAGAAGCAGTCAGACCCTCAATCATTATCGATATCATTCATTC
CGCTGAAAACTTTCATTTCAGAGAAGAAAATAAAATGCCAGTTCAAAGAA
ATTGTATTCAGTGTGGTTATATTTGTTCAAATGATATTTGTATGGCTTGT
GATTTATTAAAGAATTTAAATAGTGGTTTAGCAAAAGTTAAATTATCAAT
TAATTTAAAAAGAGGAAAAGATAATAATAATAATAGTAATAATAATGATA
ATAATAATACTTTAAAATTAGAAAGTACTTCAGCAGCAACAACAACAACA
ACAACTGTTTCAAATTAATAAATAATAATAATAAAATAATAATTGTAAAA
TTCAAATAAATAACTTCATCAGTTAATTATTAAAAATAAAACATCGGATA
TTTTGATTTTTA

Gap no gap
Contig length 1212
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 4
Number of EST 5
Link to clone list U14675
List of clone(s)

est1=VFI588F,1,598
est2=VSI866F,16,455
est3=SLA188E,37,1213
est4=VHO320Z,416,1178
est5=VSI866Z,574,1186
Translated Amino Acid sequence
isqktnk*INKMENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTI
ISNNLFKRGDRVAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLE
TVKRNQEQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKAN
KIVTGHNADDIAETVLMNFITW*ytkitkmckyynr**rsitkk*ti*iyiskrdcnvci
f*eirlffnrvylctkciqrtckrflkgfrssqtlnhyryhsfr*klsfqrrk*nasskk
lysvwlylfk*ylygl*fikefk*wfsks*iin*fkkrkr************yfkirkyf
ssnnnnnncfklinnnnkiiivkfk*itssvny*k*nigyfdf


Translated Amino Acid sequence (All Frames)
Frame A:
nfpknkqink*ngkysnkkeikim*sl*ciktsfkktknwgndl*rmflhsi*r*nssyh
hiq*fi*kr**scnwcirw*rfhsfs*nydiik*ki*lwfrfipfinrrryyrl*r*fir
ns*kksrtisnsikdfii*rii*ldng*yr*rdwikr*lyilwci*ktst**rccnvksk
*ncnwsqr**ys*ncinefyyvviyqdykdv*il*qvvkehyqevnhlnihikkrl*cmh
ilrn*iifqqsvfmhqmhtedmqeis*ri*kqsdpqslsisfiplktfisekkikcqfke
ivfsvvifvqmifvwlviy*ri*ivv*qklnyqli*keekiiiiiviimiiiil*n*kvl
qqqqqqqqlfqink****nnnckiqinnfis*llkikhrif*fl


Frame B:
isqktnk*INKMENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTI
ISNNLFKRGDRVAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLE
TVKRNQEQYQIPLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKAN
KIVTGHNADDIAETVLMNFITW*ytkitkmckyynr**rsitkk*ti*iyiskrdcnvci
f*eirlffnrvylctkciqrtckrflkgfrssqtlnhyryhsfr*klsfqrrk*nasskk
lysvwlylfk*ylygl*fikefk*wfsks*iin*fkkrkr************yfkirkyf
ssnnnnnncfklinnnnkiiivkfk*itssvny*k*nigyfdf


Frame C:
fpkkqtnk*ikwkiqqqkrnqnyvkfvmyqdqf*kdqklgk*fvknvstqylkmkfiips
ypiiylkevielqlvhqvvkipqf*lkl*hy*iknmimv*iysfyqstkvlqviemih*k
qlkeiknnikfh*rfyhiknyiigqwmislkrld*kvivhfvvyledkhlievl*c*kqi
kl*lvttlmi*lkly**illrgdiprlqrcvniitgsegalprskpfkytyqkeivmyay
fkkldyfsteciyapnayrghardflkdleavrpsiiidiihsaenfhfreenkmpvqrn
ciqcgyicsndicmacdllknlnsglakvklsinlkrgkdnnnnsnnndnnntlklests
aattttttvsn**iiiik**l*nsnk*lhqliiknktsdilif


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14675-1 (Contig-U14675-1Q)
/CSM_Contig/Contig-U14675-1Q.Seq.d
(1212 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Conti... 1901 0.0
Contig-U13677-1 (Contig-U13677-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Conti... 40 0.005
Contig-U13916-1 (Contig-U13916-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U11729-1 (Contig-U11729-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U06408-1 (Contig-U06408-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U05657-1 (Contig-U05657-1Q) /CSM_Contig/Conti... 38 0.022
Contig-U14365-1 (Contig-U14365-1Q) /CSM_Contig/Conti... 36 0.086
Contig-U10394-1 (Contig-U10394-1Q) /CSM_Contig/Conti... 32 1.3
Contig-U06330-1 (Contig-U06330-1Q) /CSM_Contig/Conti... 32 1.3

>Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
Length = 1212

Score = 1901 bits (959), Expect = 0.0
Identities = 959/959 (100%)
Strand = Plus / Plus


Query: 62 tcaaaattatgtgaagtttgtaatgtatcaagaccagttttaaaaagaccaaaaactggg 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 tcaaaattatgtgaagtttgtaatgtatcaagaccagttttaaaaagaccaaaaactggg 121


Query: 122 gaaatgatttgtaaagaatgtttctacacagtatttgaagatgaaattcatcataccatc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gaaatgatttgtaaagaatgtttctacacagtatttgaagatgaaattcatcataccatc 181


Query: 182 atatccaataatttatttaaaagaggtgatagagttgcaattggtgcatcaggtggtaaa 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 atatccaataatttatttaaaagaggtgatagagttgcaattggtgcatcaggtggtaaa 241


Query: 242 gattccacagttttagctgaaattatgacattattaaataaaaaatatgattatggttta 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 gattccacagttttagctgaaattatgacattattaaataaaaaatatgattatggttta 301


Query: 302 gatttattccttttatcaatcgacgaaggtattacaggttatagagatgattcattagaa 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 gatttattccttttatcaatcgacgaaggtattacaggttatagagatgattcattagaa 361


Query: 362 acagttaaaagaaatcaagaacaatatcaaattccattaaagattttatcatataaagaa 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 acagttaaaagaaatcaagaacaatatcaaattccattaaagattttatcatataaagaa 421


Query: 422 ttatataattggacaatggatgatatcgttaaagagattggattaaaaggtaattgtaca 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 ttatataattggacaatggatgatatcgttaaagagattggattaaaaggtaattgtaca 481


Query: 482 ttttgtggtgtatttagaagacaagcacttgatagaggtgctgtaatgttaaaagcaaat 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ttttgtggtgtatttagaagacaagcacttgatagaggtgctgtaatgttaaaagcaaat 541


Query: 542 aaaattgtaactggtcacaacgctgatgatatagctgaaactgtattaatgaattttatt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 aaaattgtaactggtcacaacgctgatgatatagctgaaactgtattaatgaattttatt 601


Query: 602 acgtggtgatataccaagattacaaagatgtgtaaatattataacaggtagtgaaggagc 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 acgtggtgatataccaagattacaaagatgtgtaaatattataacaggtagtgaaggagc 661


Query: 662 attaccaagaagtaaaccatttaaatatacatatcaaaaagagattgtaatgtatgcata 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 attaccaagaagtaaaccatttaaatatacatatcaaaaagagattgtaatgtatgcata 721


Query: 722 ttttaagaaattagattatttttcaacagagtgtatttatgcaccaaatgcatacagagg 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ttttaagaaattagattatttttcaacagagtgtatttatgcaccaaatgcatacagagg 781


Query: 782 acatgcaagagatttcttaaaggatttagaagcagtcagaccctcaatcattatcgatat 841
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 acatgcaagagatttcttaaaggatttagaagcagtcagaccctcaatcattatcgatat 841


Query: 842 cattcattccgctgaaaactttcatttcagagaagaaaataaaatgccagttcaaagaaa 901
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 cattcattccgctgaaaactttcatttcagagaagaaaataaaatgccagttcaaagaaa 901


Query: 902 ttgtattcagtgtggttatatttgttcaaatgatatttgtatggcttgtgatttattaaa 961
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 902 ttgtattcagtgtggttatatttgttcaaatgatatttgtatggcttgtgatttattaaa 961


Query: 962 gaatttaaatagtggtttagcaaaagttaaattatcaattaatttaaaaagaggaaaag 1020
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 962 gaatttaaatagtggtttagcaaaagttaaattatcaattaatttaaaaagaggaaaag 1020


Score = 97.6 bits (49), Expect = 3e-20
Identities = 49/49 (100%)
Strand = Plus / Plus


Query: 1164 cttcatcagttaattattaaaaataaaacatcggatattttgattttta 1212
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 cttcatcagttaattattaaaaataaaacatcggatattttgattttta 1212


Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus


Query: 1060 ctttaaaattagaaagtacttcagcag 1086
|||||||||||||||||||||||||||
Sbjct: 1060 ctttaaaattagaaagtacttcagcag 1086


>Contig-U13677-1 (Contig-U13677-1Q) /CSM_Contig/Contig-U13677-1Q.Seq.d
Length = 1097

Score = 40.1 bits (20), Expect = 0.005
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 988 ttaaattatcaattaattta 1007
||||||||||||||||||||
Sbjct: 266 ttaaattatcaattaattta 285


>Contig-U12479-1 (Contig-U12479-1Q) /CSM_Contig/Contig-U12479-1Q.Seq.d
Length = 1249

Score = 40.1 bits (20), Expect = 0.005
Identities = 29/32 (90%)
Strand = Plus / Plus


Query: 332 attacaggttatagagatgattcattagaaac 363
|||| |||| ||| ||||||||||||||||||
Sbjct: 1010 attagaggtaataaagatgattcattagaaac 1041


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,685
Number of Sequences: 6905
Number of extensions: 23685
Number of successful extensions: 2727
Number of sequences better than 10.0: 299
length of query: 1212
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1196
effective length of database: 5,564,391
effective search space: 6655011636
effective search space used: 6655011636
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.28
Homology vs DNA
Query= Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
(1212 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(AU060087) Dictyostelium discoideum slug cDNA, clone SLA188. 1049 0.0 2
(BJ414377) Dictyostelium discoideum cDNA clone:ddv18o21, 5' ... 1049 0.0 1
(U66527) Dictyostelium discoideum ORFveg136 mRNA, partial cds. 1001 0.0 2
(BJ445310) Dictyostelium discoideum cDNA clone:ddv59h05, 3' ... 767 0.0 2
(AU269364) Dictyostelium discoideum vegetative cDNA clone:VS... 811 0.0 2
(AU269363) Dictyostelium discoideum vegetative cDNA clone:VS... 767 0.0 1
(AU052182) Dictyostelium discoideum slug cDNA, clone SLA188. 591 0.0 3
(EC761515) PSE00007687 rw_mgpallid Polysphondylium pallidum ... 161 1e-87 5
(FC607284) CAXS3211.fwd CAXS Lottia gigantea from head, foot... 155 1e-79 5
(FC760507) CBBN12113.fwd CBBN Lottia gigantea 3,4,5,6.5d Lar... 105 4e-65 5
(FD451866) EGGAE08TR Haematobia irritans eggs Haematobia irr... 64 2e-36 7
(CV660356) tak26h03.y1 Hydra EST UCI 6 Hydra magnipapillata ... 94 3e-33 3
(FE255307) CAPH5516.rev CAPH Naegleria gruberi amoeba stage ... 56 4e-32 6
(FD451865) EGGAE08TF Haematobia irritans eggs Haematobia irr... 64 7e-32 6
(FD457665) EGGBF42TR Haematobia irritans eggs Haematobia irr... 64 5e-31 7
(FD454662) EGGAW40TR Haematobia irritans eggs Haematobia irr... 64 7e-31 7
(FD457664) EGGBF42TF Haematobia irritans eggs Haematobia irr... 64 2e-28 6
(CU426102) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 78 2e-28 6
(CU431516) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 86 8e-27 5
(CU438781) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 86 9e-27 5
(CU426589) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 86 1e-26 5
(EX652719) 256769475 Pea aphid whole body normalized full le... 88 3e-26 3
(CN756146) ID0AAA17DE05RM1 ApMS Acyrthosiphon pisum cDNA clo... 88 3e-26 3
(FF484538) G613P6359RB12.T0 Acorn worm blastula/gastrula pCM... 60 1e-25 5
(FK909409) EST_lsal_evj_933614 lsalevj mixed_tissue_mixed_st... 76 4e-25 4
(FK911319) EST_lsal_evj_935764 lsalevj mixed_tissue_mixed_st... 76 5e-25 4
(CU426174) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 62 3e-24 6
(CN559073) tad79d08.y1 Hydra EST Darmstadt I Hydra magnipapi... 86 8e-24 3
(CN632328) taf16c05.y1 Hydra EST Darmstadt I Hydra magnipapi... 86 9e-24 3
(CN628688) tae94h10.y1 Hydra EST Darmstadt I Hydra magnipapi... 86 1e-23 3
(CN628343) tae94h10.x1 Hydra EST Darmstadt I Hydra magnipapi... 86 2e-23 3
(EX640631) 256634734 Pea aphid whole body normalized full le... 88 2e-23 3
(EX481578) EST_lsal_evj_791393 lsalevj mixed_tissue_mixed_st... 76 3e-23 3
(EL565029) Physarum07364 Physarum polycephalum starvation st... 76 6e-23 3
(DR119684) RTMG1_24_G01.g1_A029 Roots minus magnesium Pinus ... 62 6e-23 4
(CU429448) Clytia hemisphaerica 5-PRIME EST from clone SA0AA... 78 1e-22 5
(DB762395) Apis mellifera head cDNA, RIKEN full-length enric... 117 1e-21 1
(EX639691) 256627508 Pea aphid whole body normalized full le... 70 5e-21 3
(DB775957) Apis mellifera head cDNA, RIKEN full-length enric... 109 2e-19 1
(EX481579) EST_lsal_evj_791777 lsalevj mixed_tissue_mixed_st... 76 3e-18 2
(FK909410) EST_lsal_evj_949742 lsalevj mixed_tissue_mixed_st... 76 3e-18 2
(FK911320) EST_lsal_evj_961108 lsalevj mixed_tissue_mixed_st... 76 3e-18 2
(EE635908) CHEL10809.b1_A15.ab1 CHE(LMS) serpentine sunflowe... 56 2e-17 5
(EX594115) HDP32N22w HDP Hordeum vulgare subsp. vulgare cDNA... 48 3e-17 6
(DY948479) CHPY406.b1_K05.ab1 CHP(XYZ) plains sunflower Heli... 56 3e-17 5
(EV829006) TT1D157TH Tetrahymena thermophila SB210 cDNA libr... 48 5e-17 5
(EL435043) CHTL2937.b2_A16.ab1 CHT(LMS) Jerusalem artichoke ... 56 7e-17 5
(FC337205) CAYY16861.fwd CAYY Physcomitrella patens subsp. p... 48 4e-16 5
(EV835741) TTSB138TH Tetrahymena thermophila SB210 cDNA libr... 48 7e-16 5
(CT792829) Paramecium tetraurelia 5-PRIME EST from clone LK0... 50 1e-15 5
(DW093983) CLPY5176.b1_P21.ab1 CLP(XYZ) lettuce perennis Lac... 46 2e-15 6
(EX317051) GQ02811.B7_D01 GQ028 - Cambium / phloem scrapping... 74 2e-15 4
(AU285682) Zinnia elegans cDNA, clone:Z615, primer:M13 forwa... 62 4e-15 4
(EE615024) CHWM2468.b1_H17.ab1 CHW(LMS) silverleaf sunflower... 56 5e-15 5
(AK106684) Oryza sativa Japonica Group cDNA clone:002-114-B1... 46 5e-15 5
(FG089271) CMRC-FF-IH0-acn-e-14-0-CMRC.r1 Ceratitis capitata... 54 7e-15 4
(EH243635) JGI_ACAC10172.fwd ACAC Phakopsora pachyrhizi TW72... 92 1e-14 2
(CD189841) MS1-0063U-A351-F12-U.B MS1-0063 Schistosoma manso... 48 1e-14 3
(FE255308) CAPH5516.fwd CAPH Naegleria gruberi amoeba stage ... 56 3e-14 2
(EX344142) GQ03102.B7.1_O24 GQ031 - Xylem Scrapings (Normali... 74 5e-14 3
(EX418670) GQ03711.B7_B21 GQ037 - Shoot tip - Dormant Picea ... 74 5e-14 3
(EX428020) GQ03817.B7_K02 GQ038 - Stem - Active growth Picea... 74 5e-14 3
(EX344502) GQ03102.B7_O24 GQ031 - Xylem Scrapings (Normalize... 74 5e-14 3
(EH242577) JGI_ACAC10172.rev ACAC Phakopsora pachyrhizi TW72... 92 6e-14 1
(EX652437) 256764267 Pea aphid whole body normalized full le... 70 1e-13 2
(DW116668) CLRY5443.b1_E17.ab1 CLR(XYZ) lettuce serriola Lac... 54 1e-13 5
(FE092719) LV_GL_RA45H11f Litopenaeus vannamei gills cDNA li... 74 1e-13 2
(CO519066) 3530_1_124_1_H10.y_1 3530 - Full length cDNA libr... 64 2e-13 3
(DR968480) ZM_BFb0089N02.r ZM_BFb Zea mays cDNA 5', mRNA seq... 64 2e-13 3
(EI267962) OR__Ba0076I04.r OR__Ba Oryza rufipogon genomic cl... 62 3e-13 2
(BT035958) Zea mays full-length cDNA clone ZM_BFb0089N02 mRN... 64 4e-13 3
(CO208951) WS0099.B21.1_L03 IS-B-N-A-10 Picea engelmannii x ... 74 5e-13 3
(EX317416) GQ02811.SP6_D01 GQ028 - Cambium / phloem scrappin... 74 6e-13 3
(DR474835) WS00962.C21_P15 IS-B-N-A-10 Picea engelmannii x P... 74 6e-13 3
(DR476525) WS00967.C21_L17 IS-B-N-A-10 Picea engelmannii x P... 74 7e-13 3
(BQ803670) WHE2840_C12_F24ZS Triticum monococcum vernalized ... 56 3e-12 4
(EE148686) SiJWG09ABE.tag5_G09_13 Lausanne fire ant library ... 86 4e-12 1
(EE129867) SiJWG09ABE Lausanne fire ant library Solenopsis i... 86 4e-12 1
(DV126592) CV03045B1G10.f1 CV03-normalized library Euphorbia... 46 4e-12 4
(CF449178) EST685523 normalized cDNA library of onion Allium... 56 8e-12 3
(CK079739) 83323rsicen_29041.y1 Oryza sativa cv. LYP9 bootin... 52 9e-12 4
(DR972293) ZM_BFb0095G09.r ZM_BFb Zea mays cDNA 5', mRNA seq... 64 3e-11 3
(EX376211) GQ03232.B7_F02 GQ032 - Shoot tip (Normalized libr... 74 4e-11 3
(EX375844) GQ03232.B7.1_F02 GQ032 - Shoot tip (Normalized li... 74 4e-11 3
(CR382139) Debaryomyces hansenii chromosome G of strain CBS7... 76 4e-11 3
(CV288895) aof01-16ms3-f12 Aof01 Asparagus officinalis cDNA ... 50 7e-11 4
(EH750755) CNSL10109.b1_J07.ab1 CNS(LMS) yellow starthistle ... 44 7e-11 4
(CB413923) ScaE_2667 Bay scallop Uni-ZAP XR Expression Libra... 78 1e-10 2
(FC820425) Sr_pAMT7_017k13_T7 S. ratti mixed stage pAMP Stro... 54 1e-10 2
(CZ547575) SRAA-aad74g11.g1 Strongyloides ratti whole genome... 54 1e-10 2
(CZ533322) SRAA-aac84e02.g1 Strongyloides ratti whole genome... 54 1e-10 2
(FC814367) Sr_pASP6_017k13_SP6 S. ratti mixed stage pAMP Str... 54 1e-10 2
(CT828119) Oryza sativa (indica cultivar-group) cDNA clone:O... 52 2e-10 4
(DW141776) CLSY9842.b1_C14.ab1 CLS(XYZ) lettuce sativa Lactu... 42 2e-10 5
(BY882887) Cryptomeria japonica cDNA clone: CMFL014_L18, 5'e... 50 2e-10 3
(EE622637) CHWM966.b1_K02.ab1 CHW(LMS) silverleaf sunflower ... 40 4e-10 5
(EE619702) CHWM6938.b1_C07.ab1 CHW(LMS) silverleaf sunflower... 40 4e-10 5
(EE615255) CHWM2702.b1_K03.ab1 CHW(LMS) silverleaf sunflower... 40 4e-10 5
(CR937698) Single read from an extremity of a cDNA clone mad... 48 5e-10 4
(CR937566) Single read from an extremity of a cDNA clone mad... 48 6e-10 4

>(AU060087) Dictyostelium discoideum slug cDNA, clone SLA188.
Length = 664

Score = 1049 bits (529), Expect(2) = 0.0
Identities = 529/529 (100%)
Strand = Plus / Plus


Query: 69 tatgtgaagtttgtaatgtatcaagaccagttttaaaaagaccaaaaactggggaaatga 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 33 tatgtgaagtttgtaatgtatcaagaccagttttaaaaagaccaaaaactggggaaatga 92


Query: 129 tttgtaaagaatgtttctacacagtatttgaagatgaaattcatcataccatcatatcca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 93 tttgtaaagaatgtttctacacagtatttgaagatgaaattcatcataccatcatatcca 152


Query: 189 ataatttatttaaaagaggtgatagagttgcaattggtgcatcaggtggtaaagattcca 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 153 ataatttatttaaaagaggtgatagagttgcaattggtgcatcaggtggtaaagattcca 212


Query: 249 cagttttagctgaaattatgacattattaaataaaaaatatgattatggtttagatttat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 cagttttagctgaaattatgacattattaaataaaaaatatgattatggtttagatttat 272


Query: 309 tccttttatcaatcgacgaaggtattacaggttatagagatgattcattagaaacagtta 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccttttatcaatcgacgaaggtattacaggttatagagatgattcattagaaacagtta 332


Query: 369 aaagaaatcaagaacaatatcaaattccattaaagattttatcatataaagaattatata 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 aaagaaatcaagaacaatatcaaattccattaaagattttatcatataaagaattatata 392


Query: 429 attggacaatggatgatatcgttaaagagattggattaaaaggtaattgtacattttgtg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 attggacaatggatgatatcgttaaagagattggattaaaaggtaattgtacattttgtg 452


Query: 489 gtgtatttagaagacaagcacttgatagaggtgctgtaatgttaaaagcaaataaaattg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 gtgtatttagaagacaagcacttgatagaggtgctgtaatgttaaaagcaaataaaattg 512


Query: 549 taactggtcacaacgctgatgatatagctgaaactgtattaatgaattt 597
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 taactggtcacaacgctgatgatatagctgaaactgtattaatgaattt 561

Score = 210 bits (106), Expect(2) = 0.0
Identities = 106/106 (100%)
Strand = Plus / Plus


Query: 596 tttattacgtggtgatataccaagattacaaagatgtgtaaatattataacaggtagtga 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tttattacgtggtgatataccaagattacaaagatgtgtaaatattataacaggtagtga 618


Query: 656 aggagcattaccaagaagtaaaccatttaaatatacatatcaaaaa 701
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 aggagcattaccaagaagtaaaccatttaaatatacatatcaaaaa 664

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,405,645,601
Number of extensions: 96298017
Number of successful extensions: 11597850
Number of sequences better than 10.0: 12756
Length of query: 1212
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1188
Effective length of database: 97,308,875,965
Effective search space: 115602944646420
Effective search space used: 115602944646420
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.12
Homology vs Protein
Query= Contig-U14675-1 (Contig-U14675-1Q) /CSM_Contig/Contig-U14675-1Q.Seq.d
(1212 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q94480) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 381 0.0
U66527_1(U66527|pid:none) Dictyostelium discoideum ORFveg136 mRN... 362 0.0
(Q5FW05) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 278 e-125
(Q05AW7) RecName: Full=ATP-binding domain-containing protein 3; ... 274 e-124
(O64862) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 288 e-124
AK106684_1(AK106684|pid:none) Oryza sativa Japonica Group cDNA c... 285 e-123
(Q803X1) RecName: Full=ATP-binding domain-containing protein 3; ... 278 e-121
BC154793_1(BC154793|pid:none) Danio rerio zgc:55395, mRNA (cDNA ... 276 e-121
(Q4P6R3) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 300 e-119
AC004521_9(AC004521|pid:none) Arabidopsis thaliana chromosome 2 ... 288 e-119
(Q5KGC1) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 274 e-118
BT081180_1(BT081180|pid:none) Caligus clemensi clone ccle-evs-51... 269 e-114
BT077317_1(BT077317|pid:none) Caligus rogercresseyi clone crog-e... 268 e-114
(Q28ZC1) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 259 e-111
(Q6FMB5) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 269 e-109
FN357390_38(FN357390|pid:none) Schistosoma mansoni genome sequen... 255 e-108
(O94282) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 269 e-108
(Q6CWX6) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 266 e-107
(P53088) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 256 e-105
CU928181_341(CU928181|pid:none) Zygosaccharomyces rouxii strain ... 258 e-104
(A8WR63) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 239 e-102
AM920431_853(AM920431|pid:none) Penicillium chrysogenum Wisconsi... 247 2e-99
CT005272_632(CT005272|pid:none) Leishmania major strain Friedlin... 246 4e-99
S64230(S71668;S71671;S64230) hypothetical protein YGL211w - yeas... 256 5e-99
AM494972_644(AM494972|pid:none) Leishmania braziliensis chromoso... 241 6e-96
AP007155_780(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 249 2e-92
AL590443_120(AL590443|pid:none) chromosome III of strain GB-M1 o... 206 2e-76
(Q99J10) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 174 4e-75
BC161898_1(BC161898|pid:none) Rattus norvegicus ATP binding doma... 172 5e-75
(Q0VC66) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 174 6e-75
(Q7Z7A3) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 172 6e-75
CR382139_118(CR382139|pid:none) Debaryomyces hansenii strain CBS... 261 5e-68
(A3GGB3) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 258 2e-67
(Q16QI1) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 251 3e-65
(Q7Q9I4) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1; ... 247 7e-64
AM910993_363(AM910993|pid:none) Plasmodium knowlesi strain H chr... 202 3e-50
CR940348_159(CR940348|pid:none) Theileria annulata strain Ankara... 165 3e-39
AM114193_2749(AM114193|pid:none) Uncultured methanogenic archaeo... 110 4e-39
CP000099_2584(CP000099|pid:none) Methanosarcina barkeri str. Fus... 115 1e-38
CP000678_553(CP000678|pid:none) Methanobrevibacter smithii ATCC ... 134 1e-37
AE010299_1923(AE010299|pid:none) Methanosarcina acetivorans str.... 114 6e-37
AE008384_2796(AE008384|pid:none) Methanosarcina mazei strain Goe... 114 2e-36
CP000102_321(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 131 7e-36
CP000300_907(CP000300|pid:none) Methanococcoides burtonii DSM 62... 109 3e-34
CP000559_962(CP000559|pid:none) Methanocorpusculum labreanum Z, ... 115 2e-33
CP000743_785(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 107 4e-32
CP001365_510(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 102 3e-31
AY596297_1781(AY596297|pid:none) Haloarcula marismortui ATCC 430... 100 6e-31
CP000477_563(CP000477|pid:none) Methanosaeta thermophila PT, com... 114 7e-31
AE017199_508(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 102 1e-30
(Q58558) RecName: Full=CTU1/ATPBD3 family protein MJ1157; &E644... 102 5e-30
BX950229_1356(BX950229|pid:none) Methanococcus maripaludis strai... 110 5e-30
CP000780_2111(CP000780|pid:none) Candidatus Methanoregula boonei... 97 8e-30
CP000682_1901(CP000682|pid:none) Metallosphaera sedula DSM 5348,... 95 1e-28
CP000855_1699(CP000855|pid:none) Thermococcus onnurineus NA1, co... 126 1e-27
CP000867_1304(CP000867|pid:none) Methanococcus maripaludis C6, c... 103 2e-27
CP000504_1007(CP000504|pid:none) Pyrobaculum islandicum DSM 4184... 89 3e-27
GM015893_282(GM015893|pid:none) Sequence 723 from Patent EP19234... 125 4e-27
CP000254_2136(CP000254|pid:none) Methanospirillum hungatei JF-1,... 97 6e-27
CP001399_1502(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 92 8e-27
AE009441_1600(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 83 1e-26
AE004437_159(AE004437|pid:none) Halobacterium sp. NRC-1, complet... 98 1e-26
CP000575_1(CP000575|pid:none) Staphylothermus marinus F1, comple... 105 2e-26
CP001338_1159(CP001338|pid:none) Candidatus Methanosphaerula pal... 91 2e-26
CP001014_1421(CP001014|pid:none) Thermoproteus neutrophilus V24S... 82 3e-26
CP001401_1509(CP001401|pid:none) Sulfolobus islandicus M.16.27, ... 92 6e-26
CP001398_21(CP001398|pid:none) Thermococcus gammatolerans EJ3, c... 120 1e-25
DQ372942_1(DQ372942|pid:none) Methanococcus voltae putative GMP ... 96 1e-25
CP000505_914(CP000505|pid:none) Thermofilum pendens Hrk 5, compl... 103 2e-25
BA000001_1727(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 118 4e-25
(Q58873) RecName: Full=CTU1/ATPBD3 family protein MJ1478; &E644... 96 4e-25
AE009950_1758(AE009950|pid:none) Pyrococcus furiosus DSM 3638, c... 116 2e-24
CP000102_279(CP000102|pid:none) Methanosphaera stadtmanae DSM 30... 102 2e-24
CP001251_1603(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,... 99 6e-23
CP000660_1450(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 79 3e-22
BA000002_397(BA000002|pid:none) Aeropyrum pernix K1 DNA, complet... 94 1e-21
CP000816_505(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 79 1e-21
CP001140_489(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 106 2e-21
A69100(A69100) conserved hypothetical protein MTH1742 - Methanob... 106 2e-21
CP000855_1724(CP000855|pid:none) Thermococcus onnurineus NA1, co... 82 4e-21
AJ248288_124(AJ248288|pid:none) Pyrococcus abyssi complete genom... 83 4e-21
CP001398_2131(CP001398|pid:none) Thermococcus gammatolerans EJ3,... 82 4e-21
CP000923_1130(CP000923|pid:none) Thermoanaerobacter sp. X514, co... 83 4e-21
AE000782_1303(AE000782|pid:none) Archaeoglobus fulgidus DSM 4304... 81 9e-21
BA000023_687(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 93 1e-20
CP000969_741(CP000969|pid:none) Thermotoga sp. RQ2, complete gen... 72 4e-20
AE008691_63(AE008691|pid:none) Thermoanaerobacter tengcongensis ... 82 4e-20
AE000512_195(AE000512|pid:none) Thermotoga maritima MSB8, comple... 72 7e-20
A72514(A72514) hypothetical protein APE2086 - Aeropyrum pernix (... 85 2e-19
CP000916_489(CP000916|pid:none) Thermotoga neapolitana DSM 4359,... 73 2e-19
AP008207_1754(AP008207|pid:none) Oryza sativa (japonica cultivar... 99 3e-19
CP000077_364(CP000077|pid:none) Sulfolobus acidocaldarius DSM 63... 87 6e-19
CP000812_411(CP000812|pid:none) Thermotoga lettingae TMO, comple... 72 6e-19
CP001146_1492(CP001146|pid:none) Dictyoglomus thermophilum H-6-1... 82 2e-18
H72637(H72637)hypothetical protein APE0537 - Aeropyrum pernix (s... 82 5e-18
CP000924_2121(CP000924|pid:none) Thermoanaerobacter pseudethanol... 78 1e-17
CP000562_481(CP000562|pid:none) Methanoculleus marisnigri JR1, c... 92 3e-17
CP001393_180(CP001393|pid:none) Anaerocellum thermophilum DSM 67... 71 1e-16
CP001147_1007(CP001147|pid:none) Thermodesulfovibrio yellowstoni... 77 2e-16
CP001140_719(CP001140|pid:none) Desulfurococcus kamchatkensis 12... 70 4e-16
CP000505_1256(CP000505|pid:none) Thermofilum pendens Hrk 5, comp... 59 1e-15
CP000679_92(CP000679|pid:none) Caldicellulosiruptor saccharolyti... 70 5e-15
CP001080_1456(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP... 64 5e-15
AL445066_188(AL445066|pid:none) Thermoplasma acidophilum complet... 83 2e-14
BA000011_444(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA,... 82 4e-14
CP001034_411(CP001034|pid:none) Natranaerobius thermophilus JW/N... 62 5e-14
CP001197_2309(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 62 1e-13
(Q3A6S7) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 75 6e-12
CP000140_2049(CP000140|pid:none) Parabacteroides distasonis ATCC... 67 9e-12
CP000728_339(CP000728|pid:none) Clostridium botulinum F str. Lan... 73 2e-11
CP000939_367(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 73 2e-11
CP000726_333(CP000726|pid:none) Clostridium botulinum A str. ATC... 72 3e-11
(Q39QC5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 72 3e-11
(Q12N51) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 4e-11
(A5GBX4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 71 9e-11
CP000939_167(CP000939|pid:none) Clostridium botulinum B1 str. Ok... 71 9e-11
CP000728_159(CP000728|pid:none) Clostridium botulinum F str. Lan... 71 9e-11
CP001358_2252(CP001358|pid:none) Desulfovibrio desulfuricans sub... 56 9e-11
CP000962_159(CP000962|pid:none) Clostridium botulinum A3 str. Lo... 70 1e-10
CP001083_164(CP001083|pid:none) Clostridium botulinum Ba4 str. 6... 70 1e-10
CP000112_3603(CP000112|pid:none) Desulfovibrio desulfuricans G20... 54 1e-10
CP000968_210(CP000968|pid:none) Candidatus Korarchaeum cryptofil... 59 1e-10
CP001359_944(CP001359|pid:none) Anaeromyxobacter dehalogenans 2C... 65 2e-10
CP001131_944(CP001131|pid:none) Anaeromyxobacter sp. K, complete... 65 2e-10
(B2T6U6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 69 3e-10
(A4TIV5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 69 4e-10
(A7H8W2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 69 4e-10
CP001106_623(CP001106|pid:none) Eubacterium eligens ATCC 27750 p... 69 4e-10
FN360867_1(FN360867|pid:none) Schistosoma mansoni genome sequenc... 68 6e-10
(A1AUS1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 68 6e-10
CP001124_610(CP001124|pid:none) Geobacter bemidjiensis Bem, comp... 68 6e-10
AP009049_2751(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 68 7e-10
(A1RJP0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 68 7e-10
CP001390_900(CP001390|pid:none) Geobacter sp. FRC-32, complete g... 68 7e-10
(Q1BSY9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 67 1e-09
(A0KB51) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 67 1e-09
(Q5E590) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 67 1e-09
AE017226_451(AE017226|pid:none) Treponema denticola ATCC 35405, ... 66 2e-09
AE017125_1612(AE017125|pid:none) Helicobacter hepaticus ATCC 514... 66 2e-09
CP000448_966(CP000448|pid:none) Syntrophomonas wolfei subsp. wol... 66 3e-09
(A3M828) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 66 3e-09
(A3QEG3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 66 3e-09
CP001056_692(CP001056|pid:none) Clostridium botulinum B str. Ekl... 66 3e-09
(A5WG99) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 4e-09
CP000964_2972(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 65 4e-09
AP006725_2205(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 65 4e-09
(Q2T1V1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 5e-09
CP000478_710(CP000478|pid:none) Syntrophobacter fumaroxidans MPO... 65 5e-09
(Q0BB90) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 5e-09
(B1YP61) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 5e-09
FM178379_1573(FM178379|pid:none) Aliivibrio salmonicida LFI1238 ... 65 6e-09
CP001078_652(CP001078|pid:none) Clostridium botulinum E3 str. Al... 65 6e-09
CP000860_826(CP000860|pid:none) Candidatus Desulforudis audaxvia... 65 6e-09
(Q1IX43) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 6e-09
(A5IGL1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 65 6e-09
AE017285_135(AE017285|pid:none) Desulfovibrio vulgaris subsp. vu... 61 8e-09
(Q3IHG8) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 8e-09
CP000891_2197(CP000891|pid:none) Shewanella baltica OS195, compl... 64 8e-09
CP001107_1311(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 64 8e-09
(A9MQT5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
(Q5PHS1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
CP001120_1727(CP001120|pid:none) Salmonella enterica subsp. ente... 64 1e-08
CP000776_658(CP000776|pid:none) Campylobacter hominis ATCC BAA-3... 64 1e-08
(A9MXN4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
AM942759_1346(AM942759|pid:none) Proteus mirabilis strain HI4320... 64 1e-08
(Q8ZP88) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
(Q8D9J0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
(Q9KS29) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
CP001408_244(CP001408|pid:none) Burkholderia pseudomallei MSHR34... 64 1e-08
CP001279_316(CP001279|pid:none) Nautilia profundicola AmH, compl... 64 1e-08
CP001600_1839(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 64 1e-08
(Q5F956) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
(A1V7Z5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 64 1e-08
CP000139_3526(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 64 1e-08
CP001154_2669(CP001154|pid:none) Laribacter hongkongensis HLHK9,... 64 1e-08
(A1TUY3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
(A0KX28) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
(A9AKB0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
(A6WNB3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
(Q57P06) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
(Q6F8Q3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
BA000016_990(BA000016|pid:none) Clostridium perfringens str. 13 ... 63 2e-08
(Q124R0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
AE015928_4556(AE015928|pid:none) Bacteroides thetaiotaomicron VP... 62 2e-08
(Q6D5P6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 63 2e-08
CP001348_3305(CP001348|pid:none) Clostridium cellulolyticum H10,... 63 2e-08
(A8H4Q7) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 3e-08
AJ278969_8(AJ278969|pid:none) Ruminococcus flavefaciens cellulos... 62 3e-08
(A9LZH0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 3e-08
(B2U0Z1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 3e-08
(B0TUN8) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 3e-08
FM180568_1536(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 62 4e-08
(A7ZLH4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 4e-08
AE009951_1444(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 62 4e-08
(Q0AI06) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 4e-08
(A8AGE0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 4e-08
(A4JIF6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 4e-08
CP001068_58(CP001068|pid:none) Ralstonia pickettii 12J chromosom... 62 4e-08
CP001503_3129(CP001503|pid:none) Burkholderia glumae BGR1 chromo... 62 5e-08
(Q0VQ34) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 5e-08
CP001091_1031(CP001091|pid:none) Actinobacillus pleuropneumoniae... 62 5e-08
CP001107_1644(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 62 5e-08
(Q47ZU5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 5e-08
CU861906_201(CU861906|pid:none) Ralstonia solanacearum strain Mo... 62 5e-08
(Q477W2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 5e-08
CP001020_823(CP001020|pid:none) Coxiella burnetii CbuK_Q154, com... 62 5e-08
(Q2KU24) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 62 5e-08
CU928158_1554(CU928158|pid:none) Escherichia fergusonii ATCC 354... 61 7e-08
CU468135_1655(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 61 7e-08
(Q7N3Y7) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
(Q1RC21) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
CP001147_879(CP001147|pid:none) Thermodesulfovibrio yellowstonii... 61 7e-08
(Q0TI22) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
(B0UU61) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
(Q0I3K3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
(B1LG84) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
CP001635_962(CP001635|pid:none) Variovorax paradoxus S110 chromo... 61 7e-08
CP001157_3209(CP001157|pid:none) Azotobacter vinelandii DJ, comp... 61 7e-08
(A9BXV6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 7e-08
(Q7NQK6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 9e-08
(A0Q736) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 61 9e-08
AE017143_1452(AE017143|pid:none) Haemophilus ducreyi strain 3500... 61 9e-08
(Q7WEL6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
(Q0T3Z1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
(B0CEK4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
CP000728_3273(CP000728|pid:none) Clostridium botulinum F str. La... 60 1e-07
(A1VJK9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
CP001056_2158(CP001056|pid:none) Clostridium botulinum B str. Ek... 60 1e-07
(Q320D9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
(Q7VU56) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 1e-07
AY967275_1(AY967275|pid:none) Synthetic construct isolate FTT104... 60 2e-07
(A4IYL5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
(A7NC76) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
AP009178_1208(AP009178|pid:none) Nitratiruptor sp. SB155-2 genom... 60 2e-07
CP001344_1185(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 60 2e-07
AY774657_1(AY774657|pid:none) Synthetic construct Francisella tu... 60 2e-07
CP001581_3500(CP001581|pid:none) Clostridium botulinum A2 str. K... 60 2e-07
(A4IXY7) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
(Q1QZ76) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
BA000026_507(BA000026|pid:none) Mycoplasma penetrans HF-2 DNA, c... 60 2e-07
AE015927_246(AE015927|pid:none) Clostridium tetani E88, complete... 60 2e-07
(A3N0Y3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
CP000382_1959(CP000382|pid:none) Clostridium novyi NT, complete ... 60 2e-07
(A0Q6E3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
(Q0AA41) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 60 2e-07
(A4SMC4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
CP000679_508(CP000679|pid:none) Caldicellulosiruptor saccharolyt... 59 3e-07
CP001019_850(CP001019|pid:none) Coxiella burnetii CbuG_Q212, com... 59 3e-07
CP000939_3294(CP000939|pid:none) Clostridium botulinum B1 str. O... 59 3e-07
(A7NBC6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
(Q8Y306) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
AP006841_1180(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 59 3e-07
(Q082E9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
CP000568_2141(CP000568|pid:none) Clostridium thermocellum ATCC 2... 59 3e-07
(A6VXH3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
(Q2SK22) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
(Q65TL6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
CP000768_99(CP000768|pid:none) Campylobacter jejuni subsp. doyle... 59 3e-07
(Q2NSV5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 3e-07
(Q4FTN3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 5e-07
(Q476S4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 5e-07
(Q1QCP2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 59 5e-07
CP000742_171(CP000742|pid:none) Methanococcus vannielii SB, comp... 59 5e-07
CP000025_108(CP000025|pid:none) Campylobacter jejuni RM1221, com... 59 5e-07
CP000814_109(CP000814|pid:none) Campylobacter jejuni subsp. jeju... 59 5e-07
AL111168_108(AL111168|pid:none) Campylobacter jejuni subsp. jeju... 59 5e-07
CP000673_147(CP000673|pid:none) Clostridium kluyveri DSM 555, co... 58 6e-07
(B1KFY6) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 6e-07
CP000962_3532(CP000962|pid:none) Clostridium botulinum A3 str. L... 58 6e-07
(A6VP68) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 6e-07
(Q1IDN2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 6e-07
AP009049_139(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 58 6e-07
CP000939_3541(CP000939|pid:none) Clostridium botulinum B1 str. O... 58 6e-07
(Q9CN39) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 8e-07
CP000728_3512(CP000728|pid:none) Clostridium botulinum F str. La... 58 8e-07
(Q48FG8) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 8e-07
AM180355_3695(AM180355|pid:none) Clostridium difficile 630 compl... 58 8e-07
(Q4ZQ35) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 58 8e-07
CP000561_1993(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 51 8e-07
CP000361_518(CP000361|pid:none) Arcobacter butzleri RM4018, comp... 57 1e-06
(A4T0E0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 1e-06
(A1SWS4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 1e-06
(B0U092) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 1e-06
CP000962_3278(CP000962|pid:none) Clostridium botulinum A3 str. L... 57 1e-06
AY658774_1(AY658774|pid:none) Synthetic construct Peudomonas aer... 57 2e-06
CP001614_1073(CP001614|pid:none) Teredinibacter turnerae T7901, ... 57 2e-06
(Q181G3) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 57 2e-06
(B0KT32) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 2e-06
(Q02J28) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 2e-06
(B1J1K3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 2e-06
(A5W7U0) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 57 2e-06
(A7N0R3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 2e-06
CP000076_4400(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 56 2e-06
CP001098_2076(CP001098|pid:none) Halothermothrix orenii H 168, c... 56 2e-06
(B1Y629) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 2e-06
(Q4K882) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 2e-06
(A5UBX9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 2e-06
(Q4QK81) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 2e-06
CP001037_5446(CP001037|pid:none) Nostoc punctiforme PCC 73102, c... 56 3e-06
(A4VJ19) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 3e-06
DQ823379_1(DQ823379|pid:none) Rhodobacter capsulatus PP superfam... 56 3e-06
CP001083_3668(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 56 3e-06
(A3PNA9) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 56 3e-06
(Q8R7K9) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 56 3e-06
AM181176_3701(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 56 3e-06
(Q3K8D5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 4e-06
CP000671_775(CP000671|pid:none) Haemophilus influenzae PittEE, c... 55 4e-06
CP001281_664(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 55 4e-06
BX950229_1353(BX950229|pid:none) Methanococcus maripaludis strai... 55 4e-06
CP001010_1436(CP001010|pid:none) Polynucleobacter necessarius su... 55 4e-06
CP001322_1230(CP001322|pid:none) Desulfatibacillum alkenivorans ... 55 5e-06
(Q21IJ4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 5e-06
CP000816_705(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 55 7e-06
AM920689_4346(AM920689|pid:none) Xanthomonas campestris pv. camp... 55 7e-06
(B0RYY8) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 7e-06
(A1B0E2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 7e-06
(Q4UNZ5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 7e-06
(A4XWK1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 55 7e-06
AE008691_1420(AE008691|pid:none) Thermoanaerobacter tengcongensi... 54 9e-06
CP001146_699(CP001146|pid:none) Dictyoglomus thermophilum H-6-12... 54 9e-06
(Q5P3T7) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 54 9e-06
(Q6LR31) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 54 1e-05
CP000381_1119(CP000381|pid:none) Neisseria meningitidis 053442, ... 54 1e-05
CP000473_3149(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 54 1e-05
CP001034_79(CP001034|pid:none) Natranaerobius thermophilus JW/NM... 54 1e-05
CP000924_1318(CP000924|pid:none) Thermoanaerobacter pseudethanol... 54 1e-05
CP000609_224(CP000609|pid:none) Methanococcus maripaludis C5, co... 54 1e-05
CP000478_1596(CP000478|pid:none) Syntrophobacter fumaroxidans MP... 53 2e-05
CP001072_1158(CP001072|pid:none) Helicobacter pylori Shi470, com... 53 2e-05
AE000511_1165(AE000511|pid:none) Helicobacter pylori 26695, comp... 53 2e-05
CP001173_1099(CP001173|pid:none) Helicobacter pylori G27, comple... 53 2e-05
AE001439_1104(AE001439|pid:none) Helicobacter pylori J99, comple... 53 2e-05
(Q9MUR3) RecName: Full=tRNA(Ile)-lysidine synthase, chloroplasti... 53 2e-05
CP001217_1140(CP001217|pid:none) Helicobacter pylori P12, comple... 53 2e-05
CP000252_1526(CP000252|pid:none) Syntrophus aciditrophicus SB, c... 52 3e-05
(B7IFR8) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 52 3e-05
CP001111_58(CP001111|pid:none) Stenotrophomonas maltophilia R551... 52 6e-05
(Q74C65) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 52 6e-05
CR522870_1330(CR522870|pid:none) Desulfotalea psychrophila LSv54... 52 6e-05
CP001251_809(CP001251|pid:none) Dictyoglomus turgidum DSM 6724, ... 51 7e-05
CP000382_155(CP000382|pid:none) Clostridium novyi NT, complete g... 51 7e-05
CP001562_968(CP001562|pid:none) Bartonella grahamii as4aup, comp... 51 9e-05
(Q8YYB8) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 50 1e-04
CP000362_1357(CP000362|pid:none) Roseobacter denitrificans OCh 1... 50 1e-04
AP009179_1754(AP009179|pid:none) Sulfurovum sp. NBC37-1 genomic ... 50 2e-04
AP009510_205(AP009510|pid:none) Uncultured Termite group 1 bacte... 50 2e-04
(Q8RHN5) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 50 2e-04
CP000109_181(CP000109|pid:none) Thiomicrospira crunogena XCL-2, ... 50 2e-04
(B2FU61) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 50 2e-04
AP009247_516(AP009247|pid:none) Candidatus Vesicomyosocius okuta... 50 2e-04
CP001287_182(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 50 2e-04
(Q67JG9) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 50 2e-04
(A9IUA2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 49 3e-04
CP000117_509(CP000117|pid:none) Anabaena variabilis ATCC 29413, ... 49 4e-04
CP001055_1529(CP001055|pid:none) Elusimicrobium minutum Pei191, ... 49 5e-04
CP000932_201(CP000932|pid:none) Campylobacter lari RM2100, compl... 49 5e-04
CP000488_528(CP000488|pid:none) Candidatus Ruthia magnifica str.... 49 5e-04
(Q3BMF4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 48 6e-04
(Q97EB0) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 48 6e-04
CP001398_151(CP001398|pid:none) Thermococcus gammatolerans EJ3, ... 48 8e-04
AE015925_511(AE015925|pid:none) Chlamydophila caviae GPIC, compl... 48 8e-04
(Q5LW09) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 48 8e-04
CP001098_54(CP001098|pid:none) Halothermothrix orenii H 168, com... 48 8e-04
CP001078_145(CP001078|pid:none) Clostridium botulinum E3 str. Al... 47 0.001
AC024202_8(AC024202|pid:none) Caenorhabditis elegans cosmid Y71H... 45 0.001
CP000859_2217(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 47 0.001
(A5EXQ4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 47 0.001
CP001344_3506(CP001344|pid:none) Cyanothece sp. PCC 7425, comple... 47 0.002
CP000581_575(CP000581|pid:none) Ostreococcus lucimarinus CCE9901... 47 0.002
CP000487_1438(CP000487|pid:none) Campylobacter fetus subsp. fetu... 47 0.002
CP001130_1546(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c... 47 0.002
(Q2NXR3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 47 0.002
(A8LMA2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 47 0.002
CP000360_62(CP000360|pid:none) Acidobacteria bacterium Ellin345,... 47 0.002
(A6X1K4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 47 0.002
CP000767_1494(CP000767|pid:none) Campylobacter curvus 525.92, co... 47 0.002
(B2I7H1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 47 0.002
CP001191_1927(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 46 0.002
AE009439_144(AE009439|pid:none) Methanopyrus kandleri AV19, comp... 46 0.002
CP001087_498(CP001087|pid:none) Desulfobacterium autotrophicum H... 46 0.002
(A5VQ10) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 46 0.003
(A4WWJ3) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 45 0.004
AP006861_487(AP006861|pid:none) Chlamydophila felis Fe/C-56 DNA,... 45 0.004
BC089700_1(BC089700|pid:none) Xenopus tropicalis hypothetical LO... 45 0.004
CP001056_152(CP001056|pid:none) Clostridium botulinum B str. Ekl... 45 0.004
CP000633_1420(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 45 0.004
CR954201_554(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 45 0.004
CP000568_2215(CP000568|pid:none) Clostridium thermocellum ATCC 2... 45 0.005
CP000116_2508(CP000116|pid:none) Thiobacillus denitrificans ATCC... 45 0.007
(Q92PH1) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 45 0.007
CP001389_1595(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 45 0.007
CP001634_1528(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, c... 45 0.007
AL591688_1791(AL591688|pid:none) Sinorhizobium meliloti 1021 com... 45 0.007
(Q11U13) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 44 0.009
AE001363_252(AE001363|pid:none) Chlamydophila pneumoniae CWL029,... 44 0.009
BA000016_1494(BA000016|pid:none) Clostridium perfringens str. 13... 44 0.009
CP000860_85(CP000860|pid:none) Candidatus Desulforudis audaxviat... 44 0.009
(Q7V9L9) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 44 0.009
(Q6AJ19) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 44 0.009
AP008971_996(AP008971|pid:none) Finegoldia magna ATCC 29328 DNA,... 44 0.012
CP000679_1146(CP000679|pid:none) Caldicellulosiruptor saccharoly... 44 0.012
AE017285_3226(AE017285|pid:none) Desulfovibrio vulgaris subsp. v... 44 0.015
CP000922_60(CP000922|pid:none) Anoxybacillus flavithermus WK1, c... 44 0.015
CR848038_501(CR848038|pid:none) Chlamydophila abortus strain S26... 44 0.015
(Q9PFT8) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 44 0.015
CP001186_58(CP001186|pid:none) Bacillus cereus G9842, complete g... 44 0.015
AE003849_566(AE003849|pid:none) Xylella fastidiosa 9a5c, complet... 44 0.015
CP001104_1813(CP001104|pid:none) Eubacterium eligens ATCC 27750,... 44 0.015
CP001291_2925(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 44 0.015
CP001124_2615(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 43 0.020
(A9BJK2) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 43 0.020
(Q10441) RecName: Full=Probable tRNA(Ile)-lysidine synthase; ... 43 0.026
(Q7CYD2) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 43 0.026
BC108465_1(BC108465|pid:none) Xenopus laevis UPF0432 protein C16... 43 0.026
(Q08B12) UPF0432 protein C16orf84 homolog B. &BC124921_1(BC1249... 43 0.026
(Q32NV1) RecName: Full=UPF0432 protein C16orf84 homolog A; 43 0.026
(Q81J84) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 43 0.026
BC070752_1(BC070752|pid:none) Xenopus laevis UPF0432 protein C16... 43 0.026
CP001176_58(CP001176|pid:none) Bacillus cereus B4264, complete g... 43 0.026
(Q6B8L1) RecName: Full=tRNA(Ile)-lysidine synthase, chloroplasti... 43 0.026
AE009441_2578(AE009441|pid:none) Pyrobaculum aerophilum str. IM2... 42 0.044
CP001100_2619(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 42 0.044
(Q6NAQ6) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 42 0.044
CP001096_1293(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 42 0.044
CP000612_123(CP000612|pid:none) Desulfotomaculum reducens MI-1, ... 42 0.044
AM422018_486(AM422018|pid:none) Candidatus Phytoplasma australie... 32 0.054
CP000885_137(CP000885|pid:none) Clostridium phytofermentans ISDg... 42 0.057
CP000112_244(CP000112|pid:none) Desulfovibrio desulfuricans G20,... 42 0.057
(Q0BYJ5) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 42 0.057
AM055942_108(AM055942|pid:none) Toxoplasma gondii RH, genomic DN... 42 0.057
CP000159_1672(CP000159|pid:none) Salinibacter ruber DSM 13855, c... 41 0.075
(Q32RX0) RecName: Full=tRNA(Ile)-lysidine synthase, chloroplasti... 41 0.075
AP006878_1552(AP006878|pid:none) Thermococcus kodakarensis KOD1 ... 41 0.075
GM017008_87(GM017008|pid:none) Sequence 1838 from Patent EP19234... 41 0.075
AM886060_25(AM886060|pid:none) Geobacillus stearothermophilus pl... 41 0.098
CP001089_2496(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 41 0.098
CP000412_288(CP000412|pid:none) Lactobacillus delbrueckii subsp.... 40 0.13
CT978603_72(CT978603|pid:none) Synechococcus sp. RCC307 genomic ... 40 0.13
BA000001_2030(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, ... 40 0.13
CP001348_3159(CP001348|pid:none) Clostridium cellulolyticum H10,... 40 0.17
CP000806_2597(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 40 0.17
BT077810_1(BT077810|pid:none) Lepeophtheirus salmonis Pacific fo... 39 0.20
(Q63HD6) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 40 0.22
AE009439_1054(AE009439|pid:none) Methanopyrus kandleri AV19, com... 40 0.22
CP000051_228(CP000051|pid:none) Chlamydia trachomatis A/HAR-13, ... 40 0.22
FM872308_220(FM872308|pid:none) Chlamydia trachomatis JALI20 ser... 40 0.22
CP000227_61(CP000227|pid:none) Bacillus cereus Q1, complete geno... 40 0.22
AM884176_464(AM884176|pid:none) Chlamydia trachomatis strain L2/... 40 0.22
(Q98NP4) RecName: Full=tRNA 2-thiocytidine biosynthesis protein ... 39 0.28
(Q6HPV4) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.28
CP000115_2696(CP000115|pid:none) Nitrobacter winogradskyi Nb-255... 39 0.28
CP001390_3389(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 39 0.28
(Q73FE5) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.28
CP001177_58(CP001177|pid:none) Bacillus cereus AH187, complete g... 39 0.28
(Q9CJH4) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.28
CP000485_56(CP000485|pid:none) Bacillus thuringiensis str. Al Ha... 39 0.28
CP001196_3239(CP001196|pid:none) Oligotropha carboxidovorans OM5... 39 0.37
(Q2JRN8) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.37
DQ422812_53(DQ422812|pid:none) Chlorokybus atmophyticus chloropl... 39 0.37
CU234118_1113(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 39 0.37
CP000916_85(CP000916|pid:none) Thermotoga neapolitana DSM 4359, ... 39 0.49
(Q3ZYX5) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.49
(Q7V987) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.49
AE016830_553(AE016830|pid:none) Enterococcus faecalis V583, comp... 39 0.49
E72564(E72564)hypothetical protein APE1799 - Aeropyrum pernix (s... 39 0.49
BA000002_1178(BA000002|pid:none) Aeropyrum pernix K1 DNA, comple... 39 0.49
(Q2JJ74) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 39 0.49
CP000554_77(CP000554|pid:none) Prochlorococcus marinus str. MIT ... 38 0.63
(Q32RJ9) RecName: Full=tRNA(Ile)-lysidine synthase, chloroplasti... 38 0.63
AM942759_2244(AM942759|pid:none) Proteus mirabilis strain HI4320... 38 0.63
(Q5WYB4) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 38 0.63
CP000504_17(CP000504|pid:none) Pyrobaculum islandicum DSM 4184, ... 38 0.63
CP001358_944(CP001358|pid:none) Desulfovibrio desulfuricans subs... 38 0.83
CP000359_984(CP000359|pid:none) Deinococcus geothermalis DSM 113... 38 0.83
(Q7UNE1) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 38 0.83
CP001359_2438(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 38 0.83
A81698(A81698) conserved hypothetical protein TC0489 [imported] ... 37 1.1
CP000964_4439(CP000964|pid:none) Klebsiella pneumoniae 342, comp... 37 1.1
(Q5L3T3) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 37 1.1
(Q5WAE0) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 37 1.1
CP001131_2357(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 37 1.1
AM295250_158(AM295250|pid:none) Staphylococcus carnosus subsp. c... 37 1.1
AP006725_928(AP006725|pid:none) Klebsiella pneumoniae NTUH-K2044... 37 1.1
CP000817_78(CP000817|pid:none) Lysinibacillus sphaericus C3-41, ... 37 1.4
(Q0SM64) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 37 1.4
CP000825_1919(CP000825|pid:none) Prochlorococcus marinus str. MI... 37 1.4
(A0Q152) RecName: Full=tRNA-specific 2-thiouridylase mnmA; ... 37 1.4
CP000875_3013(CP000875|pid:none) Herpetosiphon aurantiacus ATCC ... 37 1.4
(A7GZX4) RecName: Full=tRNA-specific 2-thiouridylase mnmA; ... 37 1.4
CP000033_262(CP000033|pid:none) Lactobacillus acidophilus NCFM, ... 37 1.8
CP000633_2651(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 37 1.8
(Q667K7) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 37 1.8
CP001145_876(CP001145|pid:none) Coprothermobacter proteolyticus ... 37 1.8
CP001127_250(CP001127|pid:none) Salmonella enterica subsp. enter... 37 1.8
CP000425_16(CP000425|pid:none) Lactococcus lactis subsp. cremori... 36 2.4
AE009439_51(AE009439|pid:none) Methanopyrus kandleri AV19, compl... 36 2.4
CP000764_57(CP000764|pid:none) Bacillus cereus subsp. cytotoxis ... 36 2.4
CP000720_1011(CP000720|pid:none) Yersinia pseudotuberculosis IP ... 36 2.4
(Q9XBG6) RecName: Full=tRNA(Ile)-lysidine synthase; EC=... 36 3.1
CP001015_11(CP001015|pid:none) Streptococcus pneumoniae G54, com... 36 3.1

>(Q94480) RecName: Full=Cytoplasmic tRNA 2-thiolation protein 1;
EC=2.7.7.-; AltName: Full=Cytoplasmic tRNA
adenylyltransferase 1; AltName: Full=ATP-binding
domain-containing protein 3;
Length = 360

Score = 381 bits (978), Expect(2) = 0.0
Identities = 187/189 (98%), Positives = 188/189 (99%)
Frame = +2

Query: 35 MENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTIISNNLFKRGDR 214
MENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTIISNNLFKRGDR
Sbjct: 1 MENTATKKKSKLCEVCNVSRPVLKRPKTGEMICKECFYTVFEDEIHHTIISNNLFKRGDR 60

Query: 215 VAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQEQYQI 394
VAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQEQYQI
Sbjct: 61 VAIGASGGKDSTVLAEIMTLLNKKYDYGLDLFLLSIDEGITGYRDDSLETVKRNQEQYQI 120

Query: 395 PLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGHNADDI 574
PLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGHNADDI
Sbjct: 121 PLKILSYKELYNWTMDDIVKEIGLKGNCTFCGVFRRQALDRGAVMLKANKIVTGHNADDI 180

Query: 575 AETVLMNFI 601
AETVLMN +
Sbjct: 181 AETVLMNLL 189

Score = 298 bits (763), Expect(2) = 0.0
Identities = 149/173 (86%), Positives = 149/173 (86%)
Frame = +3

Query: 597 LLRGDIPRLQRCVNIITGSEGALPRSKPFKYTYQKEIVMYAYFKKLDYFSTECIYAPNAY 776
LLRGDIPRLQRCVNIITGSEGALPRSKPFKYTYQKEIVMYAYFKKLDYFSTECIYAPNAY
Sbjct: 188 LLRGDIPRLQRCVNIITGSEGALPRSKPFKYTYQKEIVMYAYFKKLDYFSTECIYAPNAY 247

Query: 777 RGHARDFLKDLEAVRPSIIIDIIHSAENFHFREENKMPVQRNCIQCGYICSNDICMACDL 956
RGHARDFLKDLEAVRPSIIIDIIHSAENFHFREENKMPVQRNCIQCGYICSNDICMACDL
Sbjct: 248 RGHARDFLKDLEAVRPSIIIDIIHSAENFHFREENKMPVQRNCIQCGYICSNDICMACDL 307

Query: 957 LKNLNSGLAKVKLSINLKRGKXXXXXXXXXXXXXTLKLEXXXXXXXXXXXVSN 1115
LKNLNSGLAKVKLSINLKRGK TLKLE VSN
Sbjct: 308 LKNLNSGLAKVKLSINLKRGKDNNNNSNNNDNNNTLKLESTSAATTTTTTVSN 360

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,531,583,919
Number of extensions: 28098448
Number of successful extensions: 74689
Number of sequences better than 10.0: 539
Number of HSP's gapped: 74137
Number of HSP's successfully gapped: 666
Length of query: 404
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 273
Effective length of database: 627,191,635
Effective search space: 171223316355
Effective search space used: 171223316355
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.59 gvh: 0.37 alm: 0.46 top: 0.53 tms: 0.00 mit: 0.22 mip: 0.00
nuc: 0.07 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
12.0 %: mitochondrial
4.0 %: cytoskeletal
4.0 %: vacuolar
4.0 %: vesicles of secretory system

>> prediction for Contig-U14675-1 is nuc

VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0