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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14646-1
Contig ID Contig-U14646-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14646-1 (Contig-U14646-1Q) /CSM_Contig/Contig-U14646-1Q.Seq.d
NNNNNNNNNNTTGATAAACTTTTGTTAAATTTTCATGTACAGGTATATTT
AAAGCTACAGGTGGTAAAACTTTAACAGCAACTGGAATTAAAGATTTACA
ATCGAAAGCACGAAAAACTGTTGTTGAATTCTCTGAAATTAATGGACCCA
AATGATAACGTTGATTAACAGCTGGAAAAGTATTTGATAGATAAGTTTGA
ATTGATTTTTCAATTGATTCTTGAGAATTTAATAATCTCTTTTTATTTTC
AAAACATTCATTTGCAACTTTCTTTGTTATCAATGGTAATTGTTGATCAG
AGAATACCGATAGCTCCCTATCAACTTCCCCTTGGAATTGTTCCAACTCT
AAACGATGACGTTCAAGAATTTCCATTCTCTTTTGTTCCAATGATCTGAT
TTTAATATCTTTGCAATTATCAGTATCTAATACAATATCAGCATCATTGG
TTTTAATTAACATTCTCATACAAGATACATAATCTTCTGACATTTCCTCA
ATTGAATCTTGGAATTGTGTTAAACCATTTACATATTTTAACTTTCTTGC
TTCATTATATTCTTTTTCCTCTTGTGAACTTTGATGTTCAAATAATTCAT
TACCTAAAAATTCCAATTGTTTTAACCTATC
Gap no gap
Contig length 631
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 4887878
End point 4887333
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14646
List of clone(s) 

est1=SHJ653Z,1,622
Translated Amino Acid sequence 
xxxxdklllnfhvqvylklqvvkl*qqlelkiynrkheklllnslklmdpndnvd*QLEK
YLIDKFELIFQLILENLIISFYFQNIHLQLSLLSMVIVDQRIPIAPYQLPLGIVPTLNDD
VQEFPFSFVPMI*f*ylcnyqyliqyqhhwf*ltfsykihnlltfpqlnlgivlnhlhil
tfllhyilfplvnfdvqiihylkipivlty
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxdklllnfhvqvylklqvvkl*qqlelkiynrkheklllnslklmdpndnvd*QLEK
YLIDKFELIFQLILENLIISFYFQNIHLQLSLLSMVIVDQRIPIAPYQLPLGIVPTLNDD
VQEFPFSFVPMI*f*ylcnyqyliqyqhhwf*ltfsykihnlltfpqlnlgivlnhlhil
tfllhyilfplvnfdvqiihylkipivlty


Frame B:
xxxlinfc*ifmyryi*syrw*nfnsnwn*rftiestkncc*il*n*wtqmitlinswks
i**isln*ffn*flri**slfifktficnflcyqw*llireyr*lpinfplelfql*tmt
fknfhsllfq*sdfnifaiisi*ynisiigfn*hshtryiif*hfln*ilelc*tiyif*
lscfiifffll*tlmfk*fit*kfqlf*pi


Frame C:
xxx**tfvkfsctgifkatggktltatgikdlqskarktvvefseingpk**r*ltagkv
fdr*v*idfsids*efnnlflfskhsfatffvingnc*sentdsslstspwncsnskr*r
srisilfcsndlilislqlsvsntisaslvliniliqdt*ssdissieswncvkpftyfn
flaslysfsscel*csnnslpknsncfnl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14646-1 (Contig-U14646-1Q)
/CSM_Contig/Contig-U14646-1Q.Seq.d
         (631 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14646-1 (Contig-U14646-1Q) /CSM_Contig/Conti...  1231  0.0
Contig-U12660-1 (Contig-U12660-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14377-1 (Contig-U14377-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U13063-1 (Contig-U13063-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U12946-1 (Contig-U12946-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U11229-1 (Contig-U11229-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U10790-1 (Contig-U10790-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U10433-1 (Contig-U10433-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U01967-1 (Contig-U01967-1Q) /CSM_Contig/Conti...    36  0.044
Contig-U14193-1 (Contig-U14193-1Q) /CSM_Contig/Conti...    34  0.17

>Contig-U14646-1 (Contig-U14646-1Q) /CSM_Contig/Contig-U14646-1Q.Seq.d
          Length = 631

 Score = 1231 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  ttgataaacttttgttaaattttcatgtacaggtatatttaaagctacaggtggtaaaac 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  ttgataaacttttgttaaattttcatgtacaggtatatttaaagctacaggtggtaaaac 70

                                                                       
Query: 71  tttaacagcaactggaattaaagatttacaatcgaaagcacgaaaaactgttgttgaatt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  tttaacagcaactggaattaaagatttacaatcgaaagcacgaaaaactgttgttgaatt 130

                                                                       
Query: 131 ctctgaaattaatggacccaaatgataacgttgattaacagctggaaaagtatttgatag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 ctctgaaattaatggacccaaatgataacgttgattaacagctggaaaagtatttgatag 190

                                                                       
Query: 191 ataagtttgaattgatttttcaattgattcttgagaatttaataatctctttttattttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ataagtttgaattgatttttcaattgattcttgagaatttaataatctctttttattttc 250

                                                                       
Query: 251 aaaacattcatttgcaactttctttgttatcaatggtaattgttgatcagagaataccga 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 aaaacattcatttgcaactttctttgttatcaatggtaattgttgatcagagaataccga 310

                                                                       
Query: 311 tagctccctatcaacttccccttggaattgttccaactctaaacgatgacgttcaagaat 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tagctccctatcaacttccccttggaattgttccaactctaaacgatgacgttcaagaat 370

                                                                       
Query: 371 ttccattctcttttgttccaatgatctgattttaatatctttgcaattatcagtatctaa 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ttccattctcttttgttccaatgatctgattttaatatctttgcaattatcagtatctaa 430

                                                                       
Query: 431 tacaatatcagcatcattggttttaattaacattctcatacaagatacataatcttctga 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tacaatatcagcatcattggttttaattaacattctcatacaagatacataatcttctga 490

                                                                       
Query: 491 catttcctcaattgaatcttggaattgtgttaaaccatttacatattttaactttcttgc 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 catttcctcaattgaatcttggaattgtgttaaaccatttacatattttaactttcttgc 550

                                                                       
Query: 551 ttcattatattctttttcctcttgtgaactttgatgttcaaataattcattacctaaaaa 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 ttcattatattctttttcctcttgtgaactttgatgttcaaataattcattacctaaaaa 610

                                
Query: 611 ttccaattgttttaacctatc 631
           |||||||||||||||||||||
Sbjct: 611 ttccaattgttttaacctatc 631


>Contig-U12660-1 (Contig-U12660-1Q) /CSM_Contig/Contig-U12660-1Q.Seq.d
          Length = 1601

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 182 atttgatagataagtttgaattgatttt 209
           ||||||| ||| ||||||||||||||||
Sbjct: 906 atttgattgatgagtttgaattgatttt 879


>Contig-U14377-1 (Contig-U14377-1Q) /CSM_Contig/Contig-U14377-1Q.Seq.d
          Length = 535

 Score = 36.2 bits (18), Expect = 0.044
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 207 ttttcaattgattcttga 224
           ||||||||||||||||||
Sbjct: 166 ttttcaattgattcttga 149


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,654
Number of Sequences: 6905
Number of extensions: 10654
Number of successful extensions: 1242
Number of sequences better than 10.0: 174
length of query: 631
length of database: 5,674,871
effective HSP length: 16
effective length of query: 615
effective length of database: 5,564,391
effective search space: 3422100465
effective search space used: 3422100465
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.28
Homology vs DNA 
Query= Contig-U14646-1 (Contig-U14646-1Q) /CSM_Contig/Contig-U14646-1Q.Seq.d
         (631 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ407773) Dictyostelium discoideum cDNA clone:dds43i14, 3' ...  1231   0.0    1
(CW789184) SP__Ba0055H02.f SP__Ba Sorghum propinquum genomic...    50   0.097  1
(BZ694903) SP__Ba0055H02.f SP__Ba Sorghum propinquum genomic...    50   0.097  1
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   0.13   10
(EK586425) 1095522084258 Global-Ocean-Sampling_GS-32-01-01-1...    34   0.24   3
(AC171697) Bos taurus clone CH240-308E5, WORKING DRAFT SEQUE...    48   0.38   1
(Z50177) Caenorhabditis elegans Cosmid F46G10.                     42   0.69   4
(AC094619) Rattus norvegicus clone CH230-5C20, WORKING DRAFT...    36   0.74   7
(ER470950) 1092963955325 Global-Ocean-Sampling_GS-35-01-01-1...    38   0.79   2
(AL445564) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   0.87   10
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   1.3    11
(DD164502) NOVEL COMPOSITIONS AND METHODS FOR CANCER.              46   1.5    1
(AX695722) Sequence 1349 from Patent WO03008583.                   46   1.5    1
(AR319449) Sequence 1999 from patent US 6562958.                   46   1.5    1
(AL590395) Human DNA sequence from clone RP11-390H11 on chro...    46   1.5    1
(CU928457) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(CU856494) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.5    1
(AC092258) Mus musculus clone RG406, WORKING DRAFT SEQUENCE,...    46   1.5    1
(AC087561) Mus musculus strain C57BL6/J chromosome 13 clone ...    46   1.5    1
(CT025631) Mouse DNA sequence *** SEQUENCING IN PROGRESS ***...    46   1.5    1
(AC230945) Bos taurus clone CH240-495H23, WORKING DRAFT SEQU...    46   1.5    1
(AC022813) Homo sapiens chromosome 6 clone RP11-764K1 map 6,...    46   1.5    1
(AQ970349) RPCI-23-312A19.TV RPCI-23 Mus musculus genomic cl...    46   1.5    1
(AQ970343) RPCI-23-312A17.TV RPCI-23 Mus musculus genomic cl...    46   1.5    1
(EK053374) 1092959727234 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EK038103) 1092959486035 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.5    1
(EJ638027) 1093006414558 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.5    1
(EJ632407) 1092964806082 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.5    1
(EI879078) CAH1-61A1TV CAA1Ba Cicer arietinum genomic clone ...    46   1.5    1
(AG538339) Mus musculus molossinus DNA, clone:MSMg01-450K15....    46   1.5    1
(DY885474) CeleSEQ732 Cunninghamella elegans pBluescript (Ec...    46   1.5    1
(CD085854) MC1-0021P-A073-H12-U.B MC1-0021 Schistosoma manso...    46   1.5    1
(CU468230) Acinetobacter baumannii str. SDF, complete genome.      46   1.5    1
(CU459141) Acinetobacter baumannii str. AYE, complete genome.      46   1.5    1
(CP000863) Acinetobacter baumannii ACICU, complete genome.         46   1.5    1
(CP000521) Acinetobacter baumannii ATCC 17978, complete genome.    46   1.5    1
(AC128065) Rattus norvegicus clone CH230-466B1, WORKING DRAF...    38   2.3    2
(CU914584) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   2.4    2
(CR932957) Medicago truncatula chromosome 5 clone mth2-58c3,...    30   2.6    7
(CC564321) CH240_475N18.TARBAC13P2 CHORI-240 Bos taurus geno...    42   2.6    2
(AC169979) Medicago truncatula clone mth2-174m19, complete s...    34   2.7    3
(EJ081690) 1095460042333 Global-Ocean-Sampling_GS-26-01-01-1...    32   2.7    3
(AC093965) Rattus norvegicus clone CH230-4D13, WORKING DRAFT...    38   2.8    2
(AC184353) Strongylocentrotus purpuratus clone R3-3115G18, W...    38   2.9    3
(DC223854) Plasmodium berghei strain ANKA cDNA clone:MZ00808...    32   2.9    3
(AG032830) Pan troglodytes DNA, clone: PTB-007L01.R.               32   2.9    3
(DC223315) Plasmodium berghei strain ANKA cDNA clone:MZ00723...    32   2.9    3
(CP000409) Rickettsia canadensis str. McKiel, complete genome.     38   3.2    12
(DQ156072) Grammoptera ustulata voucher BMNH 676960 cytochro...    32   3.4    3
(FC000199) CATH6966.fwd CATH Sporobolomyces roseus IAM 13481...    34   3.9    2
(FC000198) CATH6966.rev CATH Sporobolomyces roseus IAM 13481...    34   3.9    2
(EC824096) SME00000811 esmbsro2 Sawyeria marylandensis cDNA,...    34   4.0    2
(EC822794) SME00004066 esmbsro2 Sawyeria marylandensis cDNA,...    32   4.0    2
(AM478487) Vitis vinifera, whole genome shotgun sequence, co...    32   4.2    4
(AC223556) Bos taurus clone CH240-465M24, WORKING DRAFT SEQU...    40   4.6    3
(AC123611) Mus musculus chromosome 15, clone RP23-345H23, co...    44   6.0    1
(AM461123) Vitis vinifera contig VV78X094631.6, whole genome...    44   6.0    1
(CS742950) Sequence 10946 from Patent WO2005083127.                44   6.0    1
(CS741845) Sequence 9841 from Patent WO2005083127.                 44   6.0    1
(AP004284) Homo sapiens genomic DNA, chromosome 8q23, clone:...    44   6.0    1
(AL592524) Human DNA sequence from clone RP11-2B19 on chromo...    44   6.0    1
(AF281074) Homo sapiens neuropilin 2 (NRP2) gene, complete c...    44   6.0    1
(AC104945) Homo sapiens chromosome 8, clone RP11-384L9, comp...    44   6.0    1
(AC098653) Homo sapiens chromosome 1 clone RP11-393P15, comp...    44   6.0    1
(AC087435) Homo sapiens chromosome 8, clone RP11-79O20, comp...    44   6.0    1
(AC087224) Homo sapiens chromosome 18, clone RP11-52C21, com...    44   6.0    1
(AC007362) Homo sapiens BAC clone RP11-150F11 from 2, comple...    44   6.0    1
(AC140803) Rattus norvegicus clone CH230-440J20, WORKING DRA...    44   6.0    1
(AC132498) Rattus norvegicus clone CH230-12L9, *** SEQUENCIN...    44   6.0    1
(AC120565) Rattus norvegicus clone CH230-273M4, WORKING DRAF...    44   6.0    1
(AC106618) Rattus norvegicus clone CH230-221E23, *** SEQUENC...    44   6.0    1
(AC106608) Rattus norvegicus clone CH230-184K20, WORKING DRA...    44   6.0    1
(AC026031) Homo sapiens chromosome 18 clone RP11-52C21, WORK...    44   6.0    1
(CU466440) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.0    1
(AC230231) Bos taurus clone CH240-518C19, WORKING DRAFT SEQU...    44   6.0    1
(AC230204) Bos taurus clone CH240-518D4, WORKING DRAFT SEQUE...    44   6.0    1
(AC218906) Zea mays chromosome 9 clone ZMMBBb-435H24; ZMMBBb...    44   6.0    1
(AC214779) Zea mays chromosome 9 clone CH201-119M5; ZMMBBc01...    44   6.0    1
(AC185224) Zea mays chromosome 4 clone ZMMBBb-286L9; ZMMBBb0...    44   6.0    1
(AC173417) Bos taurus clone CH240-278B13, WORKING DRAFT SEQU...    44   6.0    1
(AC009856) Homo sapiens clone RP11-2B19, WORKING DRAFT SEQUE...    44   6.0    1
(AZ554527) RPCI-23-175C21.TV RPCI-23 Mus musculus genomic cl...    44   6.0    1
(AZ527313) 267PbA09 Pb MBN #21 Plasmodium berghei genomic 3'...    44   6.0    1
(ER996484) ZMMBHo0002J04.r ZMMBHo Zea mays genomic clone ZMM...    44   6.0    1
(ER996483) ZMMBHo0002J04.f ZMMBHo Zea mays genomic clone ZMM...    44   6.0    1
(ER690173) SB_BBc100-O23.F SB_BBc Sorghum bicolor genomic 5'...    44   6.0    1
(ER627307) 1093018289327 Global-Ocean-Sampling_GS-36-01-01-2...    44   6.0    1
(ER547906) 1093016195716 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.0    1
(EK214593) 1095460113135 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(EK179084) 1095458112123 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.0    1
(EJ184064) 1092344140045 Global-Ocean-Sampling_GS-27-01-01-1...    44   6.0    1
(EJ039146) 1095454084276 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.0    1
(EJ011093) 1095403715251 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.0    1
(EI982946) SB_BBc185-F01.R SB_BBc Sorghum bicolor genomic 3'...    44   6.0    1
(DU903850) 418317 Tomato HindIII BAC Library Solanum lycoper...    44   6.0    1
(DU881365) 388428 Tomato HindIII BAC Library Solanum lycoper...    44   6.0    1
(DU881196) 388224 Tomato HindIII BAC Library Solanum lycoper...    44   6.0    1
(CT133802) Sus scrofa genomic clone CH242-276H16, genomic su...    44   6.0    1
(CG176782) PUIGY79TB ZM_0.6_1.0_KB Zea mays genomic clone ZM...    44   6.0    1
(CC998575) ZUACL60TH ZM_3.0_4.0_KB Zea mays genomic clone ZM...    44   6.0    1

>(BJ407773) Dictyostelium discoideum cDNA clone:dds43i14, 3' end,
           single read.
          Length = 622

 Score = 1231 bits (621), Expect = 0.0
 Identities = 621/621 (100%)
 Strand = Plus / Minus


Query: 11  ttgataaacttttgttaaattttcatgtacaggtatatttaaagctacaggtggtaaaac 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 ttgataaacttttgttaaattttcatgtacaggtatatttaaagctacaggtggtaaaac 563


Query: 71  tttaacagcaactggaattaaagatttacaatcgaaagcacgaaaaactgttgttgaatt 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 tttaacagcaactggaattaaagatttacaatcgaaagcacgaaaaactgttgttgaatt 503


Query: 131 ctctgaaattaatggacccaaatgataacgttgattaacagctggaaaagtatttgatag 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 ctctgaaattaatggacccaaatgataacgttgattaacagctggaaaagtatttgatag 443


Query: 191 ataagtttgaattgatttttcaattgattcttgagaatttaataatctctttttattttc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 ataagtttgaattgatttttcaattgattcttgagaatttaataatctctttttattttc 383


Query: 251 aaaacattcatttgcaactttctttgttatcaatggtaattgttgatcagagaataccga 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 aaaacattcatttgcaactttctttgttatcaatggtaattgttgatcagagaataccga 323


Query: 311 tagctccctatcaacttccccttggaattgttccaactctaaacgatgacgttcaagaat 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagctccctatcaacttccccttggaattgttccaactctaaacgatgacgttcaagaat 263


Query: 371 ttccattctcttttgttccaatgatctgattttaatatctttgcaattatcagtatctaa 430
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttccattctcttttgttccaatgatctgattttaatatctttgcaattatcagtatctaa 203


Query: 431 tacaatatcagcatcattggttttaattaacattctcatacaagatacataatcttctga 490
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 tacaatatcagcatcattggttttaattaacattctcatacaagatacataatcttctga 143


Query: 491 catttcctcaattgaatcttggaattgtgttaaaccatttacatattttaactttcttgc 550
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 catttcctcaattgaatcttggaattgtgttaaaccatttacatattttaactttcttgc 83


Query: 551 ttcattatattctttttcctcttgtgaactttgatgttcaaataattcattacctaaaaa 610
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82  ttcattatattctttttcctcttgtgaactttgatgttcaaataattcattacctaaaaa 23


Query: 611 ttccaattgttttaacctatc 631
           |||||||||||||||||||||
Sbjct: 22  ttccaattgttttaacctatc 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 844,687,156
Number of extensions: 51488927
Number of successful extensions: 4413115
Number of sequences better than 10.0: 122
Length of query: 631
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 608
Effective length of database: 93,106,754,628
Effective search space: 56608906813824
Effective search space used: 56608906813824
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14646-1 (Contig-U14646-1Q) /CSM_Contig/Contig-U14646-1Q.Seq.d
         (631 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB258222_1(AB258222|pid:none) Oryzias latipes gene for fast skel...    40   0.043
FN357343_3(FN357343|pid:none) Schistosoma mansoni genome sequenc...    40   0.043
AE000783_259(AE000783|pid:none) Borrelia burgdorferi B31, comple...    40   0.073
AP008981_1830(AP008981|pid:none) Orientia tsutsugamushi str. Ike...    40   0.073
CP000568_919(CP000568|pid:none) Clostridium thermocellum ATCC 27...    39   0.095
(Q32MZ4) RecName: Full=Leucine-rich repeat flightless-interactin...    39   0.12
BX649292_1(BX649292|pid:none) Zebrafish DNA sequence from clone ...    39   0.12
AE005174_5248(AE005174|pid:none) Escherichia coli O157:H7 EDL933...    39   0.12
AB032020_1(AB032020|pid:none) Seriola dumerilii mRNA for myosin ...    38   0.21
AB275402_1(AB275402|pid:none) Saurida wanieso wMYH1 mRNA for myo...    38   0.21
CP000710_7(CP000710|pid:none) Fusobacterium nucleatum subsp. pol...    38   0.21
AJ243767_1(AJ243767|pid:none) Notothenia coriiceps mRNA for fast...    38   0.21
CP000923_199(CP000923|pid:none) Thermoanaerobacter sp. X514, com...    38   0.28
AJ243770_1(AJ243770|pid:none) Paracirrhites forsteri mRNA for fa...    38   0.28
CP000924_1961(CP000924|pid:none) Thermoanaerobacter pseudethanol...    38   0.28
AB303687_1(AB303687|pid:none) Hypophthalmichthys molitrix MYH sc...    37   0.36
AB330141_1(AB330141|pid:none) Coryphaenoides acrolepis MyHC mRNA...    37   0.36
AJ243768_1(AJ243768|pid:none) Notothenia coriiceps partial mRNA ...    37   0.36
AB258224_1(AB258224|pid:none) Oryzias latipes gene for fast skel...    37   0.36
D89991_1(D89991|pid:none) Cyprinus carpio mRNA for myosin heavy ...    37   0.47
AF115510_1(AF115510|pid:none) Homo sapiens LRR FLI-I interacting...    37   0.47
D50475_1(D50475|pid:none) Cyprinus carpio mRNA for myosin heavy ...    37   0.47
(O66834) RecName: Full=DNA repair protein recN; AltName: Full=Re...    37   0.47
AB258225_1(AB258225|pid:none) Oryzias latipes gene for fast skel...    37   0.47
(O55092) RecName: Full=STE20-like serine/threonine-protein kinas...    37   0.47
AB076182_1(AB076182|pid:none) Oncorhynchus keta mRNA for myosin ...    37   0.61
CR380953_99(CR380953|pid:none) Candida glabrata strain CBS138 ch...    37   0.61
AB258227_1(AB258227|pid:none) Oryzias latipes gene for fast skel...    36   0.80
(Q9H2G2) RecName: Full=STE20-like serine/threonine-protein kinas...    36   0.80
AE017125_1563(AE017125|pid:none) Helicobacter hepaticus ATCC 514...    36   0.80
CP001205_249(CP001205|pid:none) Borrelia burgdorferi ZS7, comple...    36   0.80
D89990_1(D89990|pid:none) Cyprinus carpio mRNA for myosin heavy ...    36   0.80
AJ243769_1(AJ243769|pid:none) Notothenia coriiceps mRNA for slow...    36   0.80
AF165817_1(AF165817|pid:none) Danio rerio fast muscle-specific m...    36   0.80
AJ535209_1(AJ535209|pid:none) Oryza sativa mRNA for SMC1 protein.      36   1.0
AK041162_1(AK041162|pid:none) Mus musculus adult male aorta and ...    36   1.0
AM494957_379(AM494957|pid:none) Leishmania braziliensis chromoso...    36   1.0
(Q8IA98) RecName: Full=Protein CASP;  &AC025723_6(AC025723|pid:n...    35   1.4
EU414733_1(EU414733|pid:none) Ctenopharyngodon idella skeletal m...    35   1.4
BC163537_1(BC163537|pid:none) Danio rerio myosin, heavy polypept...    35   1.4
(Q2TA16) RecName: Full=Coiled-coil domain-containing protein 65;...    35   1.4
AC025723_7(AC025723|pid:none) Caenorhabditis elegans cosmid Y54F...    35   1.4
AM910987_23(AM910987|pid:none) Plasmodium knowlesi strain H chro...    35   1.4
CP000777_542(CP000777|pid:none) Leptospira biflexa serovar Patoc...    35   1.4
AB126173_1(AB126173|pid:none) Lethenteron japonicum LjMyHC1 mRNA...    35   1.4
AK048990_1(AK048990|pid:none) Mus musculus 0 day neonate cerebel...    35   1.4
BX510649_8(BX510649|pid:none) Zebrafish DNA sequence from clone ...    35   1.4
DQ067088_1(DQ067088|pid:none) Mus musculus microtubule-actin cro...    35   1.8
AB472675_1(AB472675|pid:none) Oryzias latipes mMYHL2 mRNA for my...    35   1.8
BX510649_10(BX510649|pid:none) Zebrafish DNA sequence from clone...    35   1.8
EU769112_1(EU769112|pid:none) Sander vitreus white muscle myosin...    35   1.8
AL606918_7(AL606918|pid:none) Mouse DNA sequence from clone RP23...    35   1.8
AE017308_614(AE017308|pid:none) Mycoplasma mobile 163K complete ...    35   1.8
AL606918_5(AL606918|pid:none) Mouse DNA sequence from clone RP23...    35   1.8
BC149175_1(BC149175|pid:none) Bos taurus Rho-guanine nucleotide ...    35   2.3
AF097907_1(AF097907|pid:none) Rana catesbeiana myosin heavy chai...    35   2.3
AM910993_328(AM910993|pid:none) Plasmodium knowlesi strain H chr...    35   2.3
AF045573_1(AF045573|pid:none) Mus musculus FLI-LRR associated pr...    35   2.3
AM260522_519(AM260522|pid:none) Helicobacter acinonychis str. Sh...    35   2.3
CP000300_1963(CP000300|pid:none) Methanococcoides burtonii DSM 6...    35   2.3
AC116984_116(AC116984|pid:none) Dictyostelium discoideum chromos...    34   3.1
AM946015_952(AM946015|pid:none) Streptococcus uberis 0140J compl...    34   3.1
AB303685_1(AB303685|pid:none) Hypophthalmichthys molitrix MYH sc...    34   3.1
EF634487_1(EF634487|pid:none) Ctenopharyngodon idella 30C light ...    34   3.1
CP000107_60(CP000107|pid:none) Ehrlichia canis str. Jake, comple...    34   3.1
AE000511_1126(AE000511|pid:none) Helicobacter pylori 26695, comp...    34   3.1
AB053468_1(AB053468|pid:none) Homo sapiens mRNA for ELKS beta, c...    34   4.0
AB029004_1(AB029004|pid:none) Homo sapiens mRNA for KIAA1081 pro...    34   4.0
CP000816_1407(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, c...    34   4.0
CP000087_112(CP000087|pid:none) Rickettsia bellii RML369-C, comp...    34   4.0
CP000382_361(CP000382|pid:none) Clostridium novyi NT, complete g...    34   4.0
CR940347_653(CR940347|pid:none) Theileria annulata strain Ankara...    34   4.0
AB015617_1(AB015617|pid:none) Homo sapiens ELKS mRNA, complete c...    34   4.0
AM920435_294(AM920435|pid:none) Penicillium chrysogenum Wisconsi...    34   4.0
AE010300_1965(AE010300|pid:none) Leptospira interrogans serovar ...    33   5.2
T30847(T30847) actin binding protein ACF7, neural isoform 2 - mo...    33   5.2
CR932322_1(CR932322|pid:none) Paramecium tetraurelia macronuclea...    33   5.2
AF097905_1(AF097905|pid:none) Rana catesbeiana myosin heavy chai...    33   5.2
AL606918_4(AL606918|pid:none) Mouse DNA sequence from clone RP23...    33   5.2
AK220378_1(AK220378|pid:none) Mus musculus mRNA for mKIAA1251 pr...    33   5.2
AY671899_1(AY671899|pid:none) Leishmania mexicana clone cLHYG cy...    33   5.2
AK143540_1(AK143540|pid:none) Mus musculus 12 days embryo whole ...    33   5.2
FM992689_520(FM992689|pid:none) Candida dubliniensis CD36 chromo...    33   5.2
BC067305_1(BC067305|pid:none) Xenopus tropicalis myosin heavy ch...    33   5.2
AL606918_3(AL606918|pid:none) Mouse DNA sequence from clone RP23...    33   5.2
CR940352_564(CR940352|pid:none) Theileria annulata strain Ankara...    33   5.2
AL606918_14(AL606918|pid:none) Mouse DNA sequence from clone RP2...    33   5.2
CP000312_174(CP000312|pid:none) Clostridium perfringens SM101, c...    33   5.2
DQ407754_1(DQ407754|pid:none) Gymnadenia conopsea RNA-binding pr...    33   5.2
T30849(T30849) actin binding protein ACF7, neural isoform 3 - mo...    33   5.2
AE000657_733(AE000657|pid:none) Aquifex aeolicus VF5, complete g...    33   6.8
AY517555_1(AY517555|pid:none) Homo sapiens hypothetical rhabdomy...    33   6.8
(P70976) RecName: Full=Uncharacterized protein ybaJ;  &D64126_9(...    33   6.8
AP008218_1495(AP008218|pid:none) Oryza sativa (japonica cultivar...    33   6.8
(P28023) RecName: Full=Dynactin subunit 1; AltName: Full=150 kDa...    33   6.8
(P11055) RecName: Full=Myosin-3; AltName: Full=Myosin heavy chai...    33   6.8
(O54988) RecName: Full=STE20-like serine/threonine-protein kinas...    33   6.8
AE016823_1882(AE016823|pid:none) Leptospira interrogans serovar ...    33   6.8
AF250284_159(AF250284|pid:none) Amsacta moorei entomopoxvirus, c...    33   6.8
X15696_1(X15696|pid:none) Human muscle mRNA for embryonic myosin...    33   6.8
AF039574_1(AF039574|pid:none) Mus musculus serine/threonine prot...    33   6.8
CR382136_727(CR382136|pid:none) Debaryomyces hansenii strain CBS...    33   6.8
X13100_1(X13100|pid:none) Human mRNA fragment for myosin heavy c...    33   6.8
BC076678_1(BC076678|pid:none) Xenopus tropicalis myosin, heavy p...    33   6.8
AJ237670_1(AJ237670|pid:none) Rattus norvegicus mRNA for CLIP-17...    33   6.8
S04090(S04090;S06146;S05442;S12460;S09333;A35082) myosin heavy c...    33   6.8
AE014296_2319(AE014296|pid:none) Drosophila melanogaster chromos...    33   8.9
CP001251_1241(CP001251|pid:none) Dictyoglomus turgidum DSM 6724,...    33   8.9
AL132864_3(AL132864|pid:none) Caenorhabditis elegans YAC Y53H1A,...    33   8.9
AE014296_853(AE014296|pid:none) Drosophila melanogaster chromoso...    33   8.9
(Q9UKX2) RecName: Full=Myosin-2; AltName: Full=Myosin heavy chai...    33   8.9
CP000158_958(CP000158|pid:none) Hyphomonas neptunium ATCC 15444,...    33   8.9
CP000891_370(CP000891|pid:none) Shewanella baltica OS195, comple...    33   8.9
CP000117_392(CP000117|pid:none) Anabaena variabilis ATCC 29413, ...    33   8.9
AL596129_2(AL596129|pid:none) Mouse DNA sequence from clone RP23...    33   8.9
AX239571_1(AX239571|pid:none) Sequence 14 from Patent WO0164874.       33   8.9
AY318871_168(AY318871|pid:none) Canarypox virus strain ATCC VR-1...    33   8.9
S28061(S28061) SCP1 protein - rat  &X67805_1(X67805|pid:none)          33   8.9
D88423_1(D88423|pid:none) Japanese scallop mRNA for troponin T, ...    33   8.9
BX510904_1(BX510904|pid:none) Homo sapiens mRNA; cDNA DKFZp451A1...    33   8.9
AE009948_1728(AE009948|pid:none) Streptococcus agalactiae 2603V/...    33   8.9
BC149227_1(BC149227|pid:none) Bos taurus myosin, heavy chain 3, ...    33   8.9
(Q03410) RecName: Full=Synaptonemal complex protein 1;          ...    33   8.9
CP000939_1209(CP000939|pid:none) Clostridium botulinum B1 str. O...    33   8.9
AL766853_78(AL766853|pid:none) Streptococcus agalactiae NEM316 c...    33   8.9

>AB258222_1(AB258222|pid:none) Oryzias latipes gene for fast skeletal
            myosin heavy chain isoform mMYH-1, complete cds.
          Length = 1937

 Score = 40.4 bits (93), Expect = 0.043
 Identities = 37/141 (26%), Positives = 70/141 (49%), Gaps = 5/141 (3%)
 Frame = -1

Query: 622  KQLEFLGNELFEHQSSQEEKEYNEARKLKYVNGLTQFQDSIEEMSEDYVSCMRMLIKTND 443
            K+   L  ELF+ ++S EE   ++   +K  N     Q  I +++E      + + +
Sbjct: 1475 KEARSLSTELFKMKNSYEEA-LDQLETMKREN--KNLQQEISDLTEQLGETGKSIHELEK 1531

Query: 442  ADIVLDTDNCK-----DIKIRSLEQKRMEILERHRLELEQFQGEVDRELSVFSDQQLPLI 278
            A   ++T+ C+     +    +LE +  +IL R +LEL Q +GE+DR+L+   D++L  I
Sbjct: 1532 AKKTVETEKCEIQTALEEAEGTLEHEESKIL-RVQLELNQVKGEIDRKLAE-KDEELEQI 1589

Query: 277  TKKVANECFENKKRLLNSQES 215
             +        N +R++ S +S
Sbjct: 1590 KR--------NSQRVIESMQS 1602

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 868,656,072
Number of extensions: 16317431
Number of successful extensions: 48047
Number of sequences better than 10.0: 125
Number of HSP's gapped: 47956
Number of HSP's successfully gapped: 127
Length of query: 210
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 87
Effective length of database: 653,084,107
Effective search space: 56818317309
Effective search space used: 56818317309
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.54  alm: 0.37  top: 0.53  tms: 0.00  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.50  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 32.0 %: cytoplasmic
	  8.0 %: mitochondrial
	  4.0 %: extracellular, including cell wall
	  4.0 %: vesicles of secretory system
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14646-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0