>Contig-U02755-1 (Contig-U02755-1Q) /CSM_Contig/Contig-U02755-1Q.Seq.d
CACTCTACATANACAACACACATTGATAAAATAATAGTTTCTTTCTTTTT
TTTTTTCTTTTTTTTTTTTTTTTTTTAATNAAAAAAAAAATNAAAATTAN
TTTNAAAAAAAAN

est1=AFI147F,1,114

lyixnth**NNSFFLFFFLFFFFFLXKKKXKIXXKKX

Frame A:
hstxtthidkiivsfffffffffff*xkkkxklxxkk


Frame B:
tlhxqhtlik**flsfffsffffffnxkknxnxfxkk


Frame C:
lyixnth**NNSFFLFFFLFFFFFLXKKKXKIXXKKX

Query= Contig-U02755-1 (Contig-U02755-1Q)
/CSM_Contig/Contig-U02755-1Q.Seq.d
         (113 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02755-1 (Contig-U02755-1Q) /CSM_Contig/Conti...    84  3e-17
Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Conti...    30  0.44
Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Conti...    30  0.44
Contig-U12672-1 (Contig-U12672-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U12307-1 (Contig-U12307-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U11103-1 (Contig-U11103-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U09543-1 (Contig-U09543-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U09399-1 (Contig-U09399-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U06917-1 (Contig-U06917-1Q) /CSM_Contig/Conti...    28  1.7
Contig-U05670-1 (Contig-U05670-1Q) /CSM_Contig/Conti...    28  1.7

>Contig-U02755-1 (Contig-U02755-1Q) /CSM_Contig/Contig-U02755-1Q.Seq.d
          Length = 113

 Score = 83.8 bits (42), Expect = 3e-17
 Identities = 45/45 (100%)
 Strand = Plus / Plus

                                                       
Query: 1  cactctacatanacaacacacattgataaaataatagtttctttc 45
          |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  cactctacatanacaacacacattgataaaataatagtttctttc 45


>Contig-U11697-1 (Contig-U11697-1Q) /CSM_Contig/Contig-U11697-1Q.Seq.d
          Length = 4364

 Score = 30.2 bits (15), Expect = 0.44
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 26  ataaaataatagttt 40
           |||||||||||||||
Sbjct: 90  ataaaataatagttt 104


>Contig-U05008-1 (Contig-U05008-1Q) /CSM_Contig/Contig-U05008-1Q.Seq.d
          Length = 620

 Score = 30.2 bits (15), Expect = 0.44
 Identities = 15/15 (100%)
 Strand = Plus / Plus

                          
Query: 26  ataaaataatagttt 40
           |||||||||||||||
Sbjct: 577 ataaaataatagttt 591


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 964
Number of Sequences: 6905
Number of extensions: 964
Number of successful extensions: 188
Number of sequences better than 10.0: 48
length of query: 113
length of database: 5,674,871
effective HSP length: 14
effective length of query: 99
effective length of database: 5,578,201
effective search space: 552241899
effective search space used: 552241899
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)

Query= Contig-U02755-1 (Contig-U02755-1Q) /CSM_Contig/Contig-U02755-1Q.Seq.d
         (113 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC115684) Dictyostelium discoideum chromosome 2 map 3108975...    84   1e-12  1
(BJ326649) Dictyostelium discoideum cDNA clone:dda17m11, 5' ...    84   1e-12  1
(AY392439) Dictyostelium discoideum P-selectin gene, complet...    76   3e-10  1
(BX255891) Zebrafish DNA sequence from clone DKEY-263P20 in ...    42   3.8    1
(AY972619) Hordeum vulgare subsp. vulgare cultivar Morex sub...    42   3.8    1
(BZ443340) BONMH24TR BO_1.6_2_KB_tot Brassica oleracea genom...    42   3.8    1

>(AC115684) Dictyostelium discoideum chromosome 2 map 3108975-3191114
             strain AX4, complete sequence.
          Length = 82139

 Score = 83.8 bits (42), Expect = 1e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus


Query: 1     cactctacatanacaacacacattgataaaataatagtttctttc 45
             ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 68720 cactctacatatacaacacacattgataaaataatagtttctttc 68676

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 58,374,349
Number of extensions: 3427212
Number of successful extensions: 806848
Number of sequences better than 10.0: 6
Length of query: 113
Length of database: 101,790,757,118
Length adjustment: 22
Effective length of query: 91
Effective length of database: 99,544,435,898
Effective search space: 9058543666718
Effective search space used: 9058543666718
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

Query= Contig-U02755-1 (Contig-U02755-1Q) /CSM_Contig/Contig-U02755-1Q.Seq.d
         (113 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.310    0.122    0.315

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 57,915,754
Number of extensions: 349054
Number of successful extensions: 71
Number of sequences better than 10.0: 0
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 0
Length of query: 37
Length of database: 1,051,180,864
Length adjustment: 11
Effective length of query: 26
Effective length of database: 1,015,578,715
Effective search space: 26405046590
Effective search space used: 26405046590
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.4 bits)
S2: 24 (13.9 bits)

 psg: 1.05  gvh: 0.52  alm: 0.32  top: 0.87  tms: 0.07  mit: 0.37  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 1.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 1.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: cytoplasmic
	 24.0 %: mitochondrial
	 20.0 %: nuclear
	  8.0 %: plasma membrane
	  8.0 %: endoplasmic reticulum
	  4.0 %: vesicles of secretory system
	  4.0 %: peroxisomal

>> prediction for Contig-U02755-1 is cyt