Contig-U14619-1 |
Contig ID |
Contig-U14619-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
669 |
Chromosome number (1..6, M) |
5 |
Chromosome length |
5062330 |
Start point |
4411322 |
End point |
4410663 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14619 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.27 |
Homology vs DNA |
Query= Contig-U14619-1 (Contig-U14619-1Q) /CSM_Contig/Contig-U14619-1Q.Seq.d (669 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ395530) Dictyostelium discoideum cDNA clone:dds39o04, 5' ... 456 0.0 3 (AL049180) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 36 3e-07 8 (AL844509) Plasmodium falciparum chromosome 13. 38 3e-06 15 (AC116982) Dictyostelium discoideum chromosome 2 map 3622643... 42 7e-06 10 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 8e-06 18 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 42 1e-05 11 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 34 1e-05 16 (AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s... 36 2e-05 13 (AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 36 8e-05 17 (BA000021) Wigglesworthia glossinidia endosymbiont of Glossi... 38 1e-04 15 (AC212803) Populus trichocarpa clone POP029-P20, complete se... 48 1e-04 6 (AE017308) Mycoplasma mobile 163K complete genome. 46 1e-04 15 (AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 36 1e-04 16 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 38 3e-04 10 (AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 3e-04 9 (AE014845) Plasmodium falciparum 3D7 chromosome 12, section ... 36 4e-04 13 (AL049183) Plasmodium falciparum DNA *** SEQUENCING IN PROGR... 38 4e-04 9 (AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4... 38 6e-04 10 (AC117076) Dictyostelium discoideum chromosome 2 map 3323568... 38 7e-04 8 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 36 7e-04 14 (AY863212) Rhizopus oryzae mitochondrion, complete genome. 36 7e-04 8 (CR936426) Zebrafish DNA sequence from clone CH211-147G19 in... 40 8e-04 6 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 32 0.001 18 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 38 0.001 11 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 38 0.001 12 (CR382401) Plasmodium falciparum chromosome 6, complete sequ... 36 0.001 10 (AX392737) Sequence 27 from Patent WO0212526. 34 0.001 6 (AR707084) Sequence 27 from patent US 6933145. 34 0.001 6 (AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 40 0.001 10 (AC123513) Dictyostelium discoideum strain AX4 chromosome 2 ... 42 0.001 8 (BA000016) Clostridium perfringens str. 13 DNA, complete gen... 38 0.002 14 (AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.002 10 (CU466279) Zebrafish DNA sequence from clone CH73-380L3 in l... 42 0.002 4 (AC114261) Dictyostelium discoideum chromosome 2 map 126059-... 32 0.002 7 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 36 0.002 14 (AM437347) Vitis vinifera contig VV78X275396.2, whole genome... 38 0.002 4 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.002 12 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 30 0.002 15 (AL844506) Plasmodium falciparum chromosome 7. 38 0.003 14 (AE001437) Clostridium acetobutylicum ATCC 824, complete gen... 38 0.003 17 (DX553984) GH_MBb0044H14f GH_MBb Gossypium hirsutum genomic ... 36 0.004 4 (AX392735) Sequence 25 from Patent WO0212526. 38 0.004 7 (AR707082) Sequence 25 from patent US 6933145. 38 0.004 7 (AE014840) Plasmodium falciparum 3D7 chromosome 11 section 5... 36 0.006 15 (AJ511533) Candida glabrata complete mitochondrial genome. 32 0.006 6 (CP000312) Clostridium perfringens SM101, complete genome. 38 0.006 16 (AC181255) Strongylocentrotus purpuratus clone R3-4011E12, W... 34 0.008 7 (AC005506) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 0.010 12 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.010 12 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 0.010 9 (AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s... 34 0.011 11 (AL929131) Zebrafish DNA sequence from clone CH211-286O17. 38 0.013 5 (AL034557) Plasmodium falciparum MAL4P1. 34 0.013 11 (AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9... 40 0.014 9 (AY159038) Dictyostelium discoideum LvsB (lvsB) gene, comple... 36 0.015 4 (AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 38 0.015 13 (AF362369) Dictyostelium discoideum histidine kinase DhkG (d... 34 0.016 5 (AM452840) Vitis vinifera contig VV78X148544.4, whole genome... 34 0.016 3 (AF063866) Melanoplus sanguinipes entomopoxvirus, complete g... 34 0.017 11 (AC117072) Dictyostelium discoideum chromosome 2 map 3879572... 38 0.017 10 (AL929308) Zebrafish DNA sequence from clone CH211-93M8. 40 0.018 5 (AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4... 32 0.018 12 (AL844507) Plasmodium falciparum chromosome 8. 36 0.018 14 (EU024653) Polistes sp. MD1 mitochondrion, partial genome. 34 0.018 4 (DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 38 0.020 5 (CP000721) Clostridium beijerinckii NCIMB 8052, complete gen... 36 0.021 21 (CP000246) Clostridium perfringens ATCC 13124, complete genome. 38 0.023 15 (CP000728) Clostridium botulinum F str. Langeland, complete ... 36 0.025 16 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 36 0.027 16 (CP000743) Methanococcus aeolicus Nankai-3, complete genome. 36 0.027 16 (AE014846) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.028 11 (CX969238) JGI_CAAP3413.rev NIH_XGC_tropInt1 Xenopus (Silura... 38 0.028 3 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 34 0.029 11 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 34 0.030 12 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 36 0.033 18 (AC116963) Dictyostelium discoideum chromosome 2 map 4657875... 34 0.042 10 (AY334308) Percus guiraoi NADH dehydrogenase subunit 5 (ND5)... 36 0.042 3 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 34 0.043 9 (AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8... 34 0.046 12 (AL031745) Plasmodium falciparum DNA from MAL1P2. 36 0.048 13 (CU695016) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.050 7 (AL929225) Zebrafish DNA sequence from clone CH211-250A24. 40 0.053 4 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 38 0.053 9 (AC055730) Homo sapiens chromosome 3 clone RP11-235H18, WORK... 42 0.056 3 (AC196762) Citrus sinensis clone CSRBBa-042L24, WORKING DRAF... 40 0.057 7 (AC130422) Homo sapiens chromosome 3 clone RP11-88I5, *** SE... 42 0.057 3 (AF111942) Dictyostelium discoideum AX4 development protein ... 30 0.059 5 (AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2... 38 0.059 12 (AL929016) Zebrafish DNA sequence from clone DKEY-24J9 in li... 38 0.065 6 (AL035477) Plasmodium falciparum MAL4P4. 34 0.067 9 (AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 36 0.072 7 (AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.072 11 (AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont... 36 0.077 7 (EY334929) CAWY669.fwd CAWY Helobdella robusta Subtracted Ea... 40 0.078 2 (AM458080) Vitis vinifera contig VV78X108989.6, whole genome... 32 0.080 5 (DQ832717) Phytophthora sojae mitochondrion, complete genome. 34 0.083 4 (CU464065) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.087 7 (AE017197) Rickettsia typhi str. Wilmington complete genome. 34 0.088 15 (AC172385) Strongylocentrotus purpuratus clone R3-1004I15, W... 42 0.088 5 (AF537183) Percus lineatus isolate P12 NADH dehydrogenase su... 44 0.091 2
>(BJ395530) Dictyostelium discoideum cDNA clone:dds39o04, 5' end, single read. Length = 660
Score = 456 bits (230), Expect(3) = 0.0 Identities = 230/230 (100%) Strand = Plus / Plus
Query: 1 taataatagtaatgataaaaatagaaatagttgcagcagtagtattcttgatttaataag 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 taataatagtaatgataaaaatagaaatagttgcagcagtagtattcttgatttaataag 60
Query: 61 atcaaatcaagaattaaaacataaaatcattaatattaataattataatgaatttcaatc 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 atcaaatcaagaattaaaacataaaatcattaatattaataattataatgaatttcaatc 120
Query: 121 atggatcacaaataatcaaaataaagatgattgtaataaaacattaataatatttttaaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 atggatcacaaataatcaaaataaagatgattgtaataaaacattaataatatttttaaa 180
Query: 181 atcaattgaatcaacaatgaatacttttaatttcaaagaaatcacatttg 230 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 atcaattgaatcaacaatgaatacttttaatttcaaagaaatcacatttg 230
Score = 313 bits (158), Expect(3) = 0.0 Identities = 158/158 (100%) Strand = Plus / Plus
Query: 503 gtatactatgaaagatattgtagaagatcaaataatattaaaagtatattccaatctgaa 562 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 503 gtatactatgaaagatattgtagaagatcaaataatattaaaagtatattccaatctgaa 562
Query: 563 tcatttgaaaccaataaagataatttatatattcaattaaattcaaatttagaatatcaa 622 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 563 tcatttgaaaccaataaagataatttatatattcaattaaattcaaatttagaatatcaa 622
Query: 623 ttatatagtaaaaaagctgaattaaattcaaatgaagt 660 |||||||||||||||||||||||||||||||||||||| Sbjct: 623 ttatatagtaaaaaagctgaattaaattcaaatgaagt 660
Score = 194 bits (98), Expect(3) = 0.0 Identities = 98/98 (100%) Strand = Plus / Plus
Query: 312 gcactgataattatttatcatcatcaattattggtgctgctcgttatttcgttgaattcc 371 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 312 gcactgataattatttatcatcatcaattattggtgctgctcgttatttcgttgaattcc 371
Query: 372 cacaattagatttatatattttaaattatgataatgtt 409 |||||||||||||||||||||||||||||||||||||| Sbjct: 372 cacaattagatttatatattttaaattatgataatgtt 409
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 813,406,688 Number of extensions: 60612806 Number of successful extensions: 6282844 Number of sequences better than 10.0: 961 Length of query: 669 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 645 Effective length of database: 97,308,875,965 Effective search space: 62764224997425 Effective search space used: 62764224997425 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.12 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |