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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14613-1
Contig ID Contig-U14613-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14613-1 (Contig-U14613-1Q) /CSM_Contig/Contig-U14613-1Q.Seq.d
CAATAATATAAATCAAAAAAATAAATAAAAAAATAAATAAATAAATATAA
ATAAATAAATAAATCAAAAAAAAAAATAANGTAAATAAAATAAAAAAAAA
ANNNNNNNNN
Gap no gap
Contig length 110
Chromosome number (1..6, M) 1
Chromosome length 4919822
Start point 2821144
End point 2821244
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14613
List of clone(s) 

est1=SHH509F,1,101
Translated Amino Acid sequence 
ii*ikkinkkink*i*ink*IKKKNXVNKIKKKXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
q*ykskk*ikk*inkyk*inkskkkix*ik*kkxxx


Frame B:
nninqknk*knk*inink*inqkkk*xk*nkkkxxx


Frame C:
ii*ikkinkkink*i*ink*IKKKNXVNKIKKKXXX
own update ----------
Homology vs CSM-cDNA -
dna update 2008.12.27
Homology vs DNA 
Query= Contig-U14613-1 (Contig-U14613-1Q) /CSM_Contig/Contig-U14613-1Q.Seq.d
         (110 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 0
Number of sequences better than 10.0: 0
Length of query: 110
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 88
Effective length of database: 93,199,600,587
Effective search space: 8201564851656
Effective search space used: 8201564851656
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14613-1 (Contig-U14613-1Q) /CSM_Contig/Contig-U14613-1Q.Seq.d
         (110 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 3,743,571
Number of extensions: 456216
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 36
Length of database: 1,051,180,864
Length adjustment: 10
Effective length of query: 26
Effective length of database: 1,018,815,274
Effective search space: 26489197124
Effective search space used: 26489197124
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 24 (13.9 bits)
PSORT -
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0