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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14599-1
Contig ID Contig-U14599-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Contig-U14599-1Q.Seq.d
CAAAATCATCGAAACTAAAACATATATATAATTCATTAAAATTTAAATCT
TTAAAAACTGAAAAGAATGGTTCATCATCATCAATTAAATCAAATATTTC
AAACTTTGAATTTATAATGCCAAATACACCATTACCAATATTTGATCAAC
AATCACCACCTATTCATTTCTATAATAGTAATCAGTTTTCAGATTTTCAA
TATTTTGGTACACCATTATATTCTTTAATCAAACGTCAAGATAATGGTTT
ATCAATTCCAATTTTATTAGAGAAATCAATTTCATTTTTAGAAGGTCATT
GTCATGTTGAAGATTTATTCTTTAGAAAATATAATAATGAAAAAGTTAAA
TTTATGAGAAATTCATTTGAAAGAACTGGTGATTTCAATTTCTATTATCC
AGATCCACAAGATCCCTATGATGTAGCAGCTCTCTTGGTTGAATTCATTG
CATCTTTACCTGACCAATTATTAAATGTTGAATTATATAATGCTATTAAA
AATCATACTTCTGCTTTAAACTCACAATATGGTGGTTATTGGGATATTCA
ATATTTAGCACAAAAATTATCAGTAGAGTCTAGAGAATTTTTACANNNNN
NNNN
Gap no gap
Contig length 604
Chromosome number (1..6, M) 5
Chromosome length 5062330
Start point 1222900
End point 1222306
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14599
List of clone(s) 

est1=SHG404F,1,595
Translated Amino Acid sequence 
KSSKLKHIYNSLKFKSLKTEKNGSSSSIKSNISNFEFIMPNTPLPIFDQQSPPIHFYNSN
QFSDFQYFGTPLYSLIKRQDNGLSIPILLEKSISFLEGHCHVEDLFFRKYNNEKVKFMRN
SFERTGDFNFYYPDPQDPYDVAALLVEFIASLPDQLLNVELYNAIKNHTSALNSQYGGYW
DIQYLAQKLSVESREFLXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
qnhrn*niyiih*nlnl*klkrmvhhhqlnqifqtlnl*cqihhyqylinnhhlfisiiv
isfqifnilvhhyil*snvkimvyqfqfy*rnqfhf*kvivmlkiysleniimkklnl*e
ihlkelvisisiiqihkipmm*qlswlnslhlyltny*mlnyimllkiilll*thnmvvi
gifni*hknyq*slenfyxxx


Frame B:
kiietktyi*fiki*ifkn*kewfiiin*ikyfkl*iynakytitni*stittysfl***
svfrfsifwytiiffnqtsr*wfinsnfireinfifrrslsc*rfil*ki***ks*iyek
fi*knw*fqfllsrstrsl*cssslg*ihcift*piikc*ii*cy*ksyfcfkltiwwll
gysifstkiisrv*riftxxx


Frame C:
KSSKLKHIYNSLKFKSLKTEKNGSSSSIKSNISNFEFIMPNTPLPIFDQQSPPIHFYNSN
QFSDFQYFGTPLYSLIKRQDNGLSIPILLEKSISFLEGHCHVEDLFFRKYNNEKVKFMRN
SFERTGDFNFYYPDPQDPYDVAALLVEFIASLPDQLLNVELYNAIKNHTSALNSQYGGYW
DIQYLAQKLSVESREFLXXX
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14599-1 (Contig-U14599-1Q)
/CSM_Contig/Contig-U14599-1Q.Seq.d
         (604 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Conti...  1179  0.0
Contig-U10965-1 (Contig-U10965-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U14356-1 (Contig-U14356-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13958-1 (Contig-U13958-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13839-1 (Contig-U13839-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13261-1 (Contig-U13261-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U10265-1 (Contig-U10265-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U00469-1 (Contig-U00469-1Q) /CSM_Contig/Conti...    38  0.011
Contig-U13810-1 (Contig-U13810-1Q) /CSM_Contig/Conti...    36  0.042
Contig-U11780-1 (Contig-U11780-1Q) /CSM_Contig/Conti...    36  0.042

>Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Contig-U14599-1Q.Seq.d
          Length = 604

 Score = 1180 bits (595), Expect = 0.0
 Identities = 595/595 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaaatcatcgaaactaaaacatatatataattcattaaaatttaaatctttaaaaactg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   caaaatcatcgaaactaaaacatatatataattcattaaaatttaaatctttaaaaactg 60

                                                                       
Query: 61  aaaagaatggttcatcatcatcaattaaatcaaatatttcaaactttgaatttataatgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaagaatggttcatcatcatcaattaaatcaaatatttcaaactttgaatttataatgc 120

                                                                       
Query: 121 caaatacaccattaccaatatttgatcaacaatcaccacctattcatttctataatagta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 caaatacaccattaccaatatttgatcaacaatcaccacctattcatttctataatagta 180

                                                                       
Query: 181 atcagttttcagattttcaatattttggtacaccattatattctttaatcaaacgtcaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 atcagttttcagattttcaatattttggtacaccattatattctttaatcaaacgtcaag 240

                                                                       
Query: 241 ataatggtttatcaattccaattttattagagaaatcaatttcatttttagaaggtcatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ataatggtttatcaattccaattttattagagaaatcaatttcatttttagaaggtcatt 300

                                                                       
Query: 301 gtcatgttgaagatttattctttagaaaatataataatgaaaaagttaaatttatgagaa 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtcatgttgaagatttattctttagaaaatataataatgaaaaagttaaatttatgagaa 360

                                                                       
Query: 361 attcatttgaaagaactggtgatttcaatttctattatccagatccacaagatccctatg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 attcatttgaaagaactggtgatttcaatttctattatccagatccacaagatccctatg 420

                                                                       
Query: 421 atgtagcagctctcttggttgaattcattgcatctttacctgaccaattattaaatgttg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 atgtagcagctctcttggttgaattcattgcatctttacctgaccaattattaaatgttg 480

                                                                       
Query: 481 aattatataatgctattaaaaatcatacttctgctttaaactcacaatatggtggttatt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 aattatataatgctattaaaaatcatacttctgctttaaactcacaatatggtggttatt 540

                                                                  
Query: 541 gggatattcaatatttagcacaaaaattatcagtagagtctagagaatttttaca 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 gggatattcaatatttagcacaaaaattatcagtagagtctagagaatttttaca 595


>Contig-U10965-1 (Contig-U10965-1Q) /CSM_Contig/Contig-U10965-1Q.Seq.d
          Length = 1820

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 77   atcatcaattaaatcaaata 96
            ||||||||||||||||||||
Sbjct: 1462 atcatcaattaaatcaaata 1481


>Contig-U14356-1 (Contig-U14356-1Q) /CSM_Contig/Contig-U14356-1Q.Seq.d
          Length = 1042

 Score = 38.2 bits (19), Expect = 0.011
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 331 ataataatgaaaaagttaa 349
           |||||||||||||||||||
Sbjct: 327 ataataatgaaaaagttaa 309


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,915
Number of Sequences: 6905
Number of extensions: 16915
Number of successful extensions: 2206
Number of sequences better than 10.0: 254
length of query: 604
length of database: 5,674,871
effective HSP length: 16
effective length of query: 588
effective length of database: 5,564,391
effective search space: 3271861908
effective search space used: 3271861908
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.27
Homology vs DNA 
Query= Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Contig-U14599-1Q.Seq.d
         (604 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ394674) Dictyostelium discoideum cDNA clone:dds36h02, 5' ...  1053   0.0    1
(AY232271) Dictyostelium discoideum putative protein Roco9 (...   472   0.0    3
(CR932087) Paramecium tetraurelia centrin-related protein gene.    46   0.011  3
(AL844507) Plasmodium falciparum chromosome 8.                     40   0.068  16
(AC190095) Dasypus novemcinctus clone VMRC5-243H8, WORKING D...    50   0.093  1
(AC165213) Dasypus novemcinctus clone VMRC5-60N4, WORKING DR...    50   0.093  1
(AE014836) Plasmodium falciparum 3D7 chromosome 11 section 1...    34   0.14   7
(AC201151) Strongylocentrotus purpuratus clone R3-14E9, WORK...    44   0.19   5
(FC817795) Sr_pAMT7_09p02_T7 S. ratti mixed stage pAMP Stron...    34   0.22   3
(CU012043) M.truncatula DNA sequence from clone MTH2-63O12 o...    36   0.22   4
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   0.25   14
(FC815510) Sr_pAMT7_03f04_T7 S. ratti mixed stage pAMP Stron...    34   0.26   3
(BQ091183) ku13h08.y1 Strongyloides ratti L2 pAMP1 v1 Chiape...    34   0.28   2
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.31   9
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    38   0.36   8
(AM429824) Vitis vinifera contig VV78X247899.9, whole genome...    48   0.37   1
(AC008830) Homo sapiens chromosome 5 clone CTD-2142G21, comp...    48   0.37   1
(AC074071) Homo sapiens chromosome 5 clone RP11-120L9 map 5,...    48   0.37   1
(AC181384) Strongylocentrotus purpuratus clone R3-4H01, WORK...    48   0.37   1
(AC176982) Strongylocentrotus purpuratus clone R3-36G13, WOR...    48   0.37   1
(AC016332) Homo sapiens clone RP11-30F7, WORKING DRAFT SEQUE...    48   0.37   1
(EI731089) CHORI51414B14TR BAC library from the primary brea...    48   0.37   1
(EY679049) CS00-C1-401-054-E08-CT.F Sweet orange leaf, infec...    48   0.37   1
(AC155282) Medicago truncatula chromosome 2 clone mth2-63e12...    34   0.40   5
(AC117267) Dictyostelium discoideum chromosome 2 map 5836255...    38   0.57   4
(AG053413) Pan troglodytes DNA, clone: PTB-037I14.F.               38   0.65   2
(DU113723) KBrH111K12F Brassica rapa BAC library KBrH Brassi...    36   0.71   2
(AC019233) Homo sapiens clone RP11-631O4, complete sequence.       34   0.76   2
(AC171765) Atelerix albiventris clone LB4-501D9, WORKING DRA...    34   0.78   2
(AC171533) Medicago truncatula chromosome 7 BAC clone mth2-8...    34   0.80   2
(AC137732) Homo sapiens chromosome 8 clone RP11-620C23 map 8...    34   0.82   2
(AE017308) Mycoplasma mobile 163K complete genome.                 32   0.87   14
(AF525508) Fusobacterium nucleatum hypothetical protein gene...    34   0.94   2
(BZ002956) oeg97d02.b1 B.oleracea002 Brassica oleracea genom...    34   1.0    2
(AM285310) Spiroplasma citri GII3-3X chromosome, contig Cont...    38   1.0    4
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    34   1.1    12
(DX027447) KBrB023A20F KBrB, Brassica rapa BamHI BAC library...    38   1.1    3
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6...    36   1.2    7
(DQ682330) Synthetic construct Francisella tularensis clone ...    46   1.4    1
(DQ682145) Synthetic construct Francisella tularensis clone ...    46   1.4    1
(AY871945) Synthetic construct hypothetical protein (FTT1356...    46   1.4    1
(AC124362) Mus musculus BAC clone RP24-528N1 from chromosome...    46   1.4    1
(AC112671) Mus musculus chromosome 13, clone RP24-299O19, co...    46   1.4    1
(AM447726) Vitis vinifera contig VV78X086040.3, whole genome...    46   1.4    1
(AC123078) Rattus norvegicus clone CH230-7I11, *** SEQUENCIN...    46   1.4    1
(AC094250) Rattus norvegicus clone CH230-3E8, *** SEQUENCING...    46   1.4    1
(CU424426) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.4    1
(AC191481) Atelerix albiventris clone LB4-433N20, WORKING DR...    46   1.4    1
(ER399931) 1095349049092 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.4    1
(ER391437) 1095328037580 Global-Ocean-Sampling_GS-34-01-01-1...    46   1.4    1
(EK300362) 1095462362858 Global-Ocean-Sampling_GS-31-01-01-1...    46   1.4    1
(EI348664) GM_WBc0095O08.f GM_WBc Glycine max genomic clone ...    46   1.4    1
(ED644094) GM_WBa0057D12.f GM_WBa Glycine max genomic clone ...    46   1.4    1
(BF293073) WHE2160_C04_E08ZS Triticum turgidum L. var. durum...    46   1.4    1
(FE240364) CAPG5817.fwd CAPG Naegleria gruberi amoeba stage ...    46   1.4    1
(CP000915) Francisella tularensis subsp. mediasiatica FSC147...    46   1.4    1
(CP000803) Francisella tularensis subsp. holarctica FTNF002-...    46   1.4    1
(CP000608) Francisella tularensis subsp. tularensis WY96-341...    46   1.4    1
(CP000439) Francisella tularensis subsp. novicida U112, comp...    46   1.4    1
(CP000437) Francisella tularensis subsp. holarctica OSU18, c...    46   1.4    1
(AY293579) Francisella tularensis subsp. novicida strain U11...    46   1.4    1
(AM286280) Francisella tularensis subsp. tularensis strain F...    46   1.4    1
(AM233362) Francisella tularensis subsp. holarctica LVS comp...    46   1.4    1
(AJ749949) Francisella tularensis subsp. tularensis SCHU S4 ...    46   1.4    1
(CR855112) Oryza sativa genomic DNA, chromosome 4, BAC clone...    34   1.5    3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   1.7    11
(BX510360) Zebrafish DNA sequence from clone DKEY-265A7 in l...    38   1.8    8
(AC151330) Xenopus tropicalis clone ISB-299I17, complete seq...    38   2.0    4
(AP003764) Oryza sativa Japonica Group genomic DNA, chromoso...    42   2.0    3
(AC090337) Homo sapiens chromosome 18, clone RP11-674P19, co...    38   2.0    4
(AP001556) Homo sapiens genomic DNA, chromosome 18q22 clone:...    38   2.0    4
(BQ837362) rf25d11.y1 Meloidogyne hapla J2 pAMP1 v1 Meloidog...    42   2.1    2
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    34   2.1    12
(BA000026) Mycoplasma penetrans HF-2 DNA, complete genome.         36   2.4    14
(AC123518) Oryza sativa (japonica cultivar-group) chromosome...    36   2.5    4
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    30   2.5    8
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet...    36   2.6    15
(AC181191) Strongylocentrotus purpuratus clone R3-12K17, WOR...    34   2.6    9
(AC119458) Rattus norvegicus clone CH230-355O12, WORKING DRA...    36   2.7    5
(AC095437) Rattus norvegicus clone CH230-4H9, *** SEQUENCING...    34   2.8    2
(CT486003) Mouse DNA sequence from clone RP23-415F11 on chro...    34   2.8    2
(AC115519) Rattus norvegicus clone CH230-384A21, WORKING DRA...    34   2.8    2
(BQ596447) PfESToab33h11.y1 Plasmodium falciparum 3D7 asexua...    36   3.5    2
(AC019065) Homo sapiens chromosome 14 clone RP11-161D3, WORK...    36   3.5    3
(DQ119295) Candidatus Phytoplasma australiense plasmid pCPa,...    32   3.5    2
(AC015222) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   3.5    4
(AC111723) Rattus norvegicus clone CH230-71O2, WORKING DRAFT...    36   3.5    4
(CL688855) PRI014c_F01_2 - PRI014c.BR (833) Mixed stage fosm...    32   3.8    2
(AF279908) Mycoplasma hyopneumoniae adhesin like-protein P14...    44   3.8    2
(CL692727) PRI0159d_D12_2 - PRI0159d.BR (814) Mixed stage fo...    32   3.8    2
(EK304234) 1095462375106 Global-Ocean-Sampling_GS-31-01-01-1...    34   3.8    2
(AP007930) Lotus japonicus genomic DNA, chromosome 4, clone:...    42   3.9    2
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       38   3.9    19
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    34   4.0    8
(AY653733) Acanthamoeba polyphaga mimivirus, complete genome.      32   4.0    11
(AC117988) Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom...    36   4.1    3
(AC151322) Xenopus tropicalis clone ISB-251M9, complete sequ...    38   4.2    3
(AM285323) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   4.2    3
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  40   4.3    8
(AM285311) Spiroplasma citri GII3-3X chromosome, contig Cont...    40   4.6    5

>(BJ394674) Dictyostelium discoideum cDNA clone:dds36h02, 5' end,
           single read.
          Length = 595

 Score = 1053 bits (531), Expect = 0.0
 Identities = 531/531 (100%)
 Strand = Plus / Plus


Query: 65  gaatggttcatcatcatcaattaaatcaaatatttcaaactttgaatttataatgccaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  gaatggttcatcatcatcaattaaatcaaatatttcaaactttgaatttataatgccaaa 124


Query: 125 tacaccattaccaatatttgatcaacaatcaccacctattcatttctataatagtaatca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 tacaccattaccaatatttgatcaacaatcaccacctattcatttctataatagtaatca 184


Query: 185 gttttcagattttcaatattttggtacaccattatattctttaatcaaacgtcaagataa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 gttttcagattttcaatattttggtacaccattatattctttaatcaaacgtcaagataa 244


Query: 245 tggtttatcaattccaattttattagagaaatcaatttcatttttagaaggtcattgtca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tggtttatcaattccaattttattagagaaatcaatttcatttttagaaggtcattgtca 304


Query: 305 tgttgaagatttattctttagaaaatataataatgaaaaagttaaatttatgagaaattc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 tgttgaagatttattctttagaaaatataataatgaaaaagttaaatttatgagaaattc 364


Query: 365 atttgaaagaactggtgatttcaatttctattatccagatccacaagatccctatgatgt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atttgaaagaactggtgatttcaatttctattatccagatccacaagatccctatgatgt 424


Query: 425 agcagctctcttggttgaattcattgcatctttacctgaccaattattaaatgttgaatt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 agcagctctcttggttgaattcattgcatctttacctgaccaattattaaatgttgaatt 484


Query: 485 atataatgctattaaaaatcatacttctgctttaaactcacaatatggtggttattggga 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 atataatgctattaaaaatcatacttctgctttaaactcacaatatggtggttattggga 544


Query: 545 tattcaatatttagcacaaaaattatcagtagagtctagagaatttttaca 595
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 tattcaatatttagcacaaaaattatcagtagagtctagagaatttttaca 595

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 764,433,386
Number of extensions: 50550204
Number of successful extensions: 4349658
Number of sequences better than 10.0: 202
Length of query: 604
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 581
Effective length of database: 93,106,754,628
Effective search space: 54095024438868
Effective search space used: 54095024438868
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.12
Homology vs Protein 
Query= Contig-U14599-1 (Contig-U14599-1Q) /CSM_Contig/Contig-U14599-1Q.Seq.d
         (604 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q6XHA7) RecName: Full=Probable serine/threonine-protein kinase ...   373   e-102
T27958(T27958;T27973)hypothetical protein ZK669.1a - Caenorhabdi...    50   6e-05
T27959(T27959;T27974)hypothetical protein ZK669.1b - Caenorhabdi...    50   6e-05
AY085460_1(AY085460|pid:none) Arabidopsis thaliana clone 152557 ...    49   8e-05
AK063998_1(AK063998|pid:none) Oryza sativa Japonica Group cDNA c...    49   8e-05
(Q3E875) RecName: Full=Uncharacterized Rho GTPase-activating pro...    49   8e-05
AY634313_1(AY634313|pid:none) Xenopus laevis clone 904-4 D7 shir...    48   2e-04
BC169939_1(BC169939|pid:none) Xenopus laevis shirin, mRNA (cDNA ...    48   2e-04
BC157467_1(BC157467|pid:none) Xenopus laevis cDNA clone IMAGE:40...    48   2e-04
BC169942_1(BC169942|pid:none) Xenopus laevis shirin, mRNA (cDNA ...    48   2e-04
CR942686_1(CR942686|pid:none) Xenopus tropicalis finished cDNA, ...    47   4e-04
(Q63744) RecName: Full=Rho GTPase-activating protein 7; AltName:...    44   0.003
BT039017_1(BT039017|pid:none) Zea mays full-length cDNA clone ZM...    44   0.003
D31962_1(D31962|pid:none) Rat mRNA for RhoGAP, complete cds.           44   0.003
BC089149_1(BC089149|pid:none) Xenopus laevis hypothetical protei...    44   0.005
AB208792_1(AB208792|pid:none) Homo sapiens mRNA for Rho GTPase a...    43   0.006
AF022212_1(AF022212|pid:none) Homo sapiens Rho GTPase activating...    43   0.006
BC150635_1(BC150635|pid:none) Homo sapiens Rho GTPase activating...    43   0.006
AK293078_1(AK293078|pid:none) Homo sapiens cDNA FLJ77478 complet...    43   0.006
AF117067_1(AF117067|pid:none) Homo sapiens rho-type GTPase-activ...    43   0.006
BC151638_1(BC151638|pid:none) Bos taurus deleted in liver cancer...    43   0.006
AK297713_1(AK297713|pid:none) Homo sapiens cDNA FLJ59725 complet...    43   0.006
AK303444_1(AK303444|pid:none) Homo sapiens cDNA FLJ55566 complet...    43   0.006
BC070822_1(BC070822|pid:none) Xenopus laevis hypothetical protei...    43   0.008
BC044312_1(BC044312|pid:none) Xenopus laevis hypothetical protei...    43   0.008
(Q5VT97) RecName: Full=Rho GTPase-activating protein SYDE2; AltN...    43   0.008
AK162413_1(AK162413|pid:none) Mus musculus adult male diencephal...    42   0.010
AK166015_1(AK166015|pid:none) Mus musculus lung RCB-0558 LLC cDN...    42   0.013
AL663026_3(AL663026|pid:none) Mouse DNA sequence from clone RP23...    42   0.013
AF012273_1(AF012273|pid:none) Mus musculus rho-type GTPase-activ...    42   0.013
AK048162_1(AK048162|pid:none) Mus musculus 16 days embryo head c...    42   0.013
(O54834) RecName: Full=Rho GTPase-activating protein 6; AltName:...    42   0.013
AY891643_1(AY891643|pid:none) Synthetic construct Homo sapiens c...    42   0.017
AK298562_1(AK298562|pid:none) Homo sapiens cDNA FLJ60782 complet...    42   0.017
(Q07960) RecName: Full=Rho GTPase-activating protein 1; AltName:...    42   0.017
BC154705_1(BC154705|pid:none) Xenopus tropicalis hypothetical pr...    42   0.017
AL691489_9(AL691489|pid:none) Mouse DNA sequence from clone RP23...    41   0.022
AK079048_1(AK079048|pid:none) Mus musculus adult male diencephal...    41   0.022
(Q5FWK3) RecName: Full=Rho GTPase-activating protein 1; AltName:...    41   0.022
AK084622_1(AK084622|pid:none) Mus musculus 13 days embryo heart ...    41   0.022
AE014135_54(AE014135|pid:none) Drosophila melanogaster chromosom...    41   0.022
AK046291_1(AK046291|pid:none) Mus musculus adult male corpora qu...    41   0.022
EU832224_1(EU832224|pid:none) Synthetic construct Homo sapiens c...    41   0.029
AB051510_1(AB051510|pid:none) Homo sapiens mRNA for KIAA1723 pro...    41   0.029
(Q9PT60) RecName: Full=RalA-binding protein 1-A;          Short=...    41   0.029
BC054511_1(BC054511|pid:none) Homo sapiens deleted in liver canc...    41   0.029
AB384275_1(AB384275|pid:none) Synthetic construct DNA, clone: pF...    41   0.029
BC070617_1(BC070617|pid:none) Xenopus laevis hypothetical protei...    41   0.029
AK291682_1(AK291682|pid:none) Homo sapiens cDNA FLJ78668 complet...    41   0.029
AF026219_1(AF026219|pid:none) Homo sapiens HP protein (HP) mRNA,...    41   0.029
AK299049_1(AK299049|pid:none) Homo sapiens cDNA FLJ59738 complet...    41   0.029
(Q54C77) RecName: Full=Probable inactive serine/threonine-protei...    40   0.038
AJ252165_1(AJ252165|pid:none) Xenopus laevis partial mRNA for Ra...    40   0.038
BC079089_1(BC079089|pid:none) Rattus norvegicus Rho GTPase activ...    40   0.038
BC076733_1(BC076733|pid:none) Xenopus laevis Rho GTPase activati...    40   0.050
AF035119_1(AF035119|pid:none) Homo sapiens deleted in liver canc...    40   0.065
BC027830_1(BC027830|pid:none) Mus musculus StAR-related lipid tr...    40   0.065
AK136202_1(AK136202|pid:none) Mus musculus in vitro fertilized e...    40   0.065
(Q923Q2) RecName: Full=StAR-related lipid transfer protein 13; A...    40   0.065
(Q3KRB8) RecName: Full=Rho GTPase-activating protein 11B; AltNam...    39   0.085
BC151396_1(BC151396|pid:none) Bos taurus StAR-related lipid tran...    39   0.15
AK095114_1(AK095114|pid:none) Homo sapiens cDNA FLJ37795 fis, cl...    39   0.15
BX005476_1(BX005476|pid:none) Zebrafish DNA sequence from clone ...    39   0.15
AK133927_1(AK133927|pid:none) Mus musculus 8 days embryo whole b...    39   0.15
(Q8K031) RecName: Full=StAR-related lipid transfer protein 8; Al...    39   0.15
AL139187_1(AL139187|pid:none) Human DNA sequence from clone RP11...    39   0.15
AK091804_1(AK091804|pid:none) Homo sapiens cDNA FLJ34485 fis, cl...    39   0.15
AY366448_1(AY366448|pid:none) Homo sapiens chromosome 13 Rho GTP...    39   0.15
(Q86XT1) RecName: Full=StAR-related lipid transfer protein 13; A...    39   0.15
BX647695_1(BX647695|pid:none) Homo sapiens mRNA; cDNA DKFZp686I0...    39   0.15
BT031104_1(BT031104|pid:none) Drosophila melanogaster IP11791 fu...    38   0.25
AM989983_21(AM989983|pid:none) Zygosaccharomyces rouxii strain C...    38   0.25
AY075440_1(AY075440|pid:none) Drosophila melanogaster RE02250 fu...    38   0.25
(Q92502) RecName: Full=StAR-related lipid transfer protein 8; Al...    38   0.25
CR749411_1(CR749411|pid:none) Homo sapiens mRNA; cDNA DKFZp686H1...    38   0.25
BC081352_1(BC081352|pid:none) Xenopus tropicalis Rho GTPase acti...    37   0.32
AJ306731_1(AJ306731|pid:none) Homo sapiens mRNA for RhoGAP prote...    37   0.42
AB060553_1(AB060553|pid:none) Mus musculus mRNA for Nadrin1, com...    37   0.42
AY094969_1(AY094969|pid:none) Drosophila melanogaster SD08167 fu...    37   0.42
AB042827_1(AB042827|pid:none) Rattus norvegicus mRNA for Nadrin,...    37   0.42
AJ304845_1(AJ304845|pid:none) Xenopus laevis partial mRNA for Ra...    37   0.42
BC003259_1(BC003259|pid:none) Mus musculus Rho GTPase activating...    37   0.42
AE014298_2622(AE014298|pid:none) Drosophila melanogaster chromos...    37   0.42
(Q99N37) RecName: Full=Rho GTPase-activating protein 17; AltName...    37   0.42
(Q9BVF6) RecName: Full=Rho GTPase-activating protein 17; AltName...    37   0.42
AK027567_1(AK027567|pid:none) Homo sapiens cDNA FLJ14661 fis, cl...    37   0.42
AB080637_1(AB080637|pid:none) Rattus norvegicus mRNA for Nadrin-...    37   0.42
BC066523_1(BC066523|pid:none) Danio rerio zgc:76867, mRNA (cDNA ...    37   0.42
AB060554_1(AB060554|pid:none) Mus musculus mRNA for Nadrin2, com...    37   0.42
AB290183_1(AB290183|pid:none) Homo sapiens mRNA for MYO9A varian...    37   0.55
(Q9NUY2) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ...    37   0.55
AK029836_1(AK029836|pid:none) Mus musculus adult male testis cDN...    37   0.55
AF117888_1(AF117888|pid:none) Homo sapiens myosin-IXa mRNA, comp...    37   0.55
AK001923_1(AK001923|pid:none) Homo sapiens cDNA FLJ11061 fis, cl...    37   0.55
(Q9Z1N3) RecName: Full=Myosin-IXa; AltName: Full=Unconventional ...    37   0.55
BC059382_1(BC059382|pid:none) Homo sapiens Rho GTPase activating...    36   0.72
BC160606_1(BC160606|pid:none) Danio rerio zgc:158426, mRNA (cDNA...    36   0.72
AK022305_1(AK022305|pid:none) Homo sapiens cDNA FLJ12243 fis, cl...    36   0.72
BC166229_1(BC166229|pid:none) Xenopus tropicalis hypothetical pr...    36   0.72
AL355192_1(AL355192|pid:none) Novel human gene mapping to chomos...    35   1.2
AF195968_1(AF195968|pid:none) Homo sapiens rho GTPase activating...    35   1.2
BC010490_1(BC010490|pid:none) Homo sapiens Rho GTPase activating...    35   1.2
BC048280_1(BC048280|pid:none) Homo sapiens Rho GTPase activating...    35   1.2
AL772405_5(AL772405|pid:none) Mouse DNA sequence from clone RP23...    35   1.6
BX842635_27(BX842635|pid:none) Neurospora crassa DNA linkage gro...    35   1.6
Z83838_5(Z83838|pid:none) Human DNA sequence from clone RP1-127B...    35   1.6
T15220(T15220)hypothetical protein F57C9.8 - Caenorhabditis eleg...    35   1.6
AL772405_4(AL772405|pid:none) Mouse DNA sequence from clone RP23...    35   1.6
(Q80Y19) RecName: Full=Rho GTPase-activating protein 11A; AltNam...    35   1.6
CR380949_230(CR380949|pid:none) Candida glabrata strain CBS138 c...    35   1.6
AK129034_1(AK129034|pid:none) Mus musculus mRNA for mKIAA0013 pr...    35   1.6
AB007925_1(AB007925|pid:none) Homo sapiens mRNA for KIAA0456 pro...    35   2.1
AK293335_1(AK293335|pid:none) Homo sapiens cDNA FLJ61210 complet...    35   2.1
BC132872_1(BC132872|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ...    35   2.1
AE010299_3604(AE010299|pid:none) Methanosarcina acetivorans str....    35   2.1
(O75044) RecName: Full=SLIT-ROBO Rho GTPase-activating protein 2...    35   2.1
BC144343_1(BC144343|pid:none) Homo sapiens SLIT-ROBO Rho GTPase ...    35   2.1
AL670305_3(AL670305|pid:none) Mouse DNA sequence from clone RP23...    34   2.7
AL670305_2(AL670305|pid:none) Mouse DNA sequence from clone RP23...    34   2.7
CR382139_516(CR382139|pid:none) Debaryomyces hansenii strain CBS...    34   2.7
CU928176_477(CU928176|pid:none) Zygosaccharomyces rouxii strain ...    34   2.7
CP001575_325(CP001575|pid:none) Micromonas sp. RCC299 chromosome...    34   2.7
BC168690_1(BC168690|pid:none) Rattus norvegicus SLIT-ROBO Rho GT...    34   3.6
BC066588_1(BC066588|pid:none) Danio rerio zgc:77004, mRNA (cDNA ...    34   3.6
BC000277_1(BC000277|pid:none) Homo sapiens Rho GTPase-activating...    33   4.7
AB079856_1(AB079856|pid:none) Homo sapiens grit mRNA for Rho GTP...    33   4.7
(A7KAX9) RecName: Full=Rho/Cdc42/Rac GTPase-activating protein R...    33   4.7
FN357486_9(FN357486|pid:none) Schistosoma mansoni genome sequenc...    33   6.1
AE016819_849(AE016819|pid:none) Ashbya gossypii (= Eremothecium ...    33   6.1
CP000758_670(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188...    33   6.1
FN357904_4(FN357904|pid:none) Schistosoma mansoni genome sequenc...    33   8.0
AK122276_1(AK122276|pid:none) Mus musculus mRNA for mKIAA0411 pr...    33   8.0
AF270756_1(AF270756|pid:none) Penaea mucronata NADH dehydrogenas...    33   8.0
AM270339_38(AM270339|pid:none) Aspergillus niger contig An15c012...    33   8.0
AM235399_1(AM235399|pid:none) Penaea cneorum subsp. cneorum chlo...    33   8.0
AM235402_1(AM235402|pid:none) Penaea cneorum subsp. ovata chloro...    33   8.0

>(Q6XHA7) RecName: Full=Probable serine/threonine-protein kinase
           roco9;          EC=2.7.11.1; AltName: Full=Ras of
           complex proteins and C-terminal of roc 9;
           &AY232271_1(AY232271|pid:none)
          Length = 3365

 Score =  373 bits (957), Expect = e-102
 Identities = 183/197 (92%), Positives = 183/197 (92%)
 Frame = +3

Query: 3   KSSKLKHIYNSLKFKSLKTEXXXXXXXXXXXXXXFEFIMPNTPLPIFDQQSPPIHFYNSN 182
           KSSKLKHIYNSLKFKSLKTE              FEFIMPNTPLPIFDQQSPPIHFYNSN
Sbjct: 174 KSSKLKHIYNSLKFKSLKTEKNGSSSSIKSNISNFEFIMPNTPLPIFDQQSPPIHFYNSN 233

Query: 183 QFSDFQYFGTPLYSLIKRQDNGLSIPILLEKSISFLEGHCHVEDLFFRKYNNEKVKFMRN 362
           QFSDFQYFGTPLYSLIKRQDNGLSIPILLEKSISFLEGHCHVEDLFFRKYNNEKVKFMRN
Sbjct: 234 QFSDFQYFGTPLYSLIKRQDNGLSIPILLEKSISFLEGHCHVEDLFFRKYNNEKVKFMRN 293

Query: 363 SFERTGDFNFYYPDPQDPYDVAALLVEFIASLPDQLLNVELYNAIKNHTSALNSQYGGYW 542
           SFERTGDFNFYYPDPQDPYDVAALLVEFIASLPDQLLNVELYNAIKNHTSALNSQYGGYW
Sbjct: 294 SFERTGDFNFYYPDPQDPYDVAALLVEFIASLPDQLLNVELYNAIKNHTSALNSQYGGYW 353

Query: 543 DIQYLAQKLSVESREFL 593
           DIQYLAQKLSVESREFL
Sbjct: 354 DIQYLAQKLSVESREFL 370

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 803,975,615
Number of extensions: 15782271
Number of successful extensions: 38767
Number of sequences better than 10.0: 136
Number of HSP's gapped: 38709
Number of HSP's successfully gapped: 136
Length of query: 201
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 79
Effective length of database: 656,320,666
Effective search space: 51849332614
Effective search space used: 51849332614
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.68  gvh: 0.27  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.32  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 28.0 %: cytoplasmic
	 16.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane

>> prediction for Contig-U14599-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0