Homology vs CSM-cDNA |
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Homology vs DNA |
Query= Contig-U14580-1 (Contig-U14580-1Q) /CSM_Contig/Contig-U14580-1Q.Seq.d (249 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ393750) Dictyostelium discoideum cDNA clone:dds32b14, 5' ... 293 1e-75 1 (BJ405668) Dictyostelium discoideum cDNA clone:dds32b14, 3' ... 256 3e-64 1 (AC169425) Bos taurus clone CH240-202N8, WORKING DRAFT SEQUE... 42 0.037 2 (DU339827) 1098312126197 CHORI-243 Ovis aries genomic clone ... 44 0.068 2 (DU517656) 1098609816311 CHORI-243 Ovis aries genomic clone ... 44 0.13 2 (CR392045) Zebrafish DNA sequence from clone DKEY-167C9 in l... 48 0.14 1 (CU290012) Equus caballus GSS, BAC clone CH241-456F20, T7 en... 38 0.39 2 (CR936323) Medicago truncatula chromosome 5 clone mth2-155c8... 40 0.97 2 (AE014850) Plasmodium falciparum 3D7 chromosome 12, section ... 32 1.1 2 (AC005505) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 1.2 2 (CC295147) CH261-125F11_RM1.1 CH261 Gallus gallus genomic cl... 32 1.5 2 (CC517817) CH240_364K23.TARBAC13P2 CHORI-240 Bos taurus geno... 32 1.5 2 (AU087396) Plasmodium falciparum 3D7 cDNA clone from Sugano ... 32 1.6 2 (DD293979) SUSCEPTIBILITY GENE FOR HUMAN STROKE; METHODS OF ... 44 2.2 1 (AX573239) Sequence 85 from Patent WO02074992. 44 2.2 1 (AX573238) Sequence 1 from Patent WO02074992. 44 2.2 1 (AC109486) Homo sapiens chromosome 5 clone RP11-546M4, compl... 44 2.2 1 (AC096560) Homo sapiens BAC clone RP11-241F6 from 2, complet... 44 2.2 1 (AC157422) Bos taurus clone CH240-71C4, WORKING DRAFT SEQUEN... 44 2.2 1 (AC157415) Bos taurus clone CH240-66M24, WORKING DRAFT SEQUE... 44 2.2 1 (AC155125) Bos taurus clone CH240-43B9, WORKING DRAFT SEQUEN... 44 2.2 1 (AC107887) Homo sapiens chromosome 8 clone RP11-45D21 map 8,... 44 2.2 1 (CU467037) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 2.2 1 (AY245863) Homo sapiens chromosome 5 clone RP11-151F7, *** S... 44 2.2 1 (AY245860) Homo sapiens chromosome 5 clone RP11-151G2, *** S... 44 2.2 1 (AC224506) Bos taurus clone CH240-483L18, WORKING DRAFT SEQU... 44 2.2 1 (AC182910) Bos taurus clone CH240-308K10, WORKING DRAFT SEQU... 44 2.2 1 (AC176941) Strongylocentrotus purpuratus clone R3-33M4, WORK... 44 2.2 1 (AC173014) Bos taurus clone CH240-170G1, WORKING DRAFT SEQUE... 44 2.2 1 (AC171852) Bos taurus clone CH240-165M6, WORKING DRAFT SEQUE... 44 2.2 1 (AC169355) Bos taurus clone CH240-199D12, WORKING DRAFT SEQU... 44 2.2 1 (EI234778) OR__Ba0031B07.f OR__Ba Oryza rufipogon genomic cl... 44 2.2 1 (EI214377) OR__Ba0004B17.f OR__Ba Oryza rufipogon genomic cl... 44 2.2 1 (ED761853) GM_WBb0132P01.r GM_WBb Glycine max genomic clone ... 44 2.2 1 (CW896123) RPCI42_128C8.TJ RPCI-42 Bos taurus genomic clone ... 44 2.2 1 (CU286871) Equus caballus GSS, BAC clone CH241-450K18, T7 en... 44 2.2 1 (CU274710) Equus caballus GSS, BAC clone CH241-430I19, T7 en... 44 2.2 1 (CT300764) Sus scrofa genomic clone CH242-211K10, genomic su... 44 2.2 1 (CL769069) OR_BBa0141H10.r OR_BBa Oryza nivara genomic clone... 44 2.2 1 (CE750751) tigr-gss-dog-17000369607151 Dog Library Canis lup... 44 2.2 1 (BM960670) cihA8F12S Ascidian hemocytes cDNA library Ciona i... 44 2.2 1 (EY371315) CAXA13376.rev CAXA Helobdella robusta Subtracted ... 44 2.2 1 (BH740098) gf24g12.b2 TO1000 Brassica oleracea genomic clone... 38 3.0 2 (AC151003) Bos taurus clone CH240-161J10, WORKING DRAFT SEQU... 38 3.9 3 (CT573423) Zebrafish DNA sequence from clone CH211-3M11 in l... 36 3.9 3 (AC104946) Homo sapiens chromosome 8, clone RP11-946L20, com... 32 4.2 2 (AC197406) Pan troglodytes chromosome 7 clone CH251-324M23, ... 30 4.2 2 (AC121590) Mus musculus BAC clone RP23-281L22 from 2, comple... 32 4.2 2 (AC009930) Homo sapiens chromosome 8, clone RP11-114O8, comp... 32 4.2 2 (AC006026) Homo sapiens BAC clone GS1-96J14 from 7, complete... 30 4.3 2 (BX539347) Zebrafish DNA sequence from clone CH211-262E15 in... 32 4.3 2 (AL928543) Mouse DNA sequence from clone RP23-345P1 on chrom... 32 4.4 2 (AC007941) Homo sapiens chromosome 18 clone RP11-356L1 map 1... 40 4.4 2 (AM480372) Vitis vinifera contig VV78X252469.11, whole genom... 32 4.7 2 (AM450922) Vitis vinifera contig VV78X147520.3, whole genome... 30 5.0 2 (AM424226) Vitis vinifera contig VV78X130822.5, whole genome... 30 5.1 2 (AZ116964) RPCI-23-10I12.TJ RPCI-23 Mus musculus genomic clo... 32 5.4 2 (EK219165) 1095460134302 Global-Ocean-Sampling_GS-31-01-01-1... 32 5.7 2 (EX653959) 256854289 Pea aphid whole body normalized full le... 32 5.7 2 (ED774070) GM_WBb0150E16.r GM_WBb Glycine max genomic clone ... 32 5.7 2 (EX647963) 256719668 Pea aphid whole body normalized full le... 32 5.7 2 (ED630960) GM_WBa0031N16.f GM_WBa Glycine max genomic clone ... 32 5.7 2 (ED618101) GM_WBa0011L16.r GM_WBa Glycine max genomic clone ... 30 5.8 2 (EY630301) CAWW21621.rev CAWW Capitella sp. I ECS-2004 Subtr... 30 5.8 2 (FH216476) CHO_OF3337xd05f1.ab1 CHO_OF3 Nicotiana tabacum ge... 38 5.9 2 (BH952491) odh02g08.b1 B.oleracea002 Brassica oleracea genom... 38 6.2 2 (BX248234) Zebrafish DNA sequence from clone DKEY-13E15 in l... 38 6.9 3 (DU750585) ASNF1554.g2 HF130_10-06-02 uncultured marine micr... 38 7.2 2 (AM441723) Vitis vinifera contig VV78X066821.6, whole genome... 42 8.2 2 (CR391998) Zebrafish DNA sequence from clone CH211-175F12 in... 34 8.4 3 (EF058657) Synthetic construct Saccharomyces cerevisiae clon... 42 8.8 1 (AC160062) Mus musculus 6 BAC RP23-427I18 (Roswell Park Canc... 42 8.8 1 (AC155649) Mus musculus 6 BAC RP24-234M19 (Roswell Park Canc... 42 8.8 1 (Z48756) S.cerevisiae chromosome XIII cosmid 9408. 42 8.8 1 (AP009847) Lotus japonicus genomic DNA, clone: LjT02E24, TM1... 42 8.8 1 (AM448143) Vitis vinifera contig VV78X030938.3, whole genome... 42 8.8 1 (AC009400) Arabidopsis thaliana chromosome III BAC F14P13 ge... 42 8.8 1 (DJ210326) Method for identification of useful proteins deri... 42 8.8 1 (DJ025881) Genome-wide DNA marker of Saccharomyces cerevisiae. 42 8.8 1 (DQ305038) Mytilus californianus protamine-like PL-II/PL-IV ... 42 8.8 1 (AJ844389) Zygaena cynarae subsp. samarensis mitochondrial p... 42 8.8 1 (AJ844351) Zygaena felix subsp. boursini mitochondrial parti... 42 8.8 1 (AC131237) Homo sapiens 3 BAC RP11-47L11 (Roswell Park Cance... 42 8.8 1 (AC008873) Homo sapiens chromosome 5 clone CTD-2199H11, comp... 42 8.8 1 (AC135774) Rattus norvegicus clone CH230-81K12, *** SEQUENCI... 42 8.8 1 (CU856578) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 8.8 1 (CU633215) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 8.8 1 (AC078979) Homo sapiens chromosome 3 clone RP11-296N12, WORK... 42 8.8 1 (AP007721) Lotus japonicus genomic DNA, chromosome 1, clone:... 42 8.8 1 (AC230361) Bos taurus clone CH240-510M15, WORKING DRAFT SEQU... 42 8.8 1 (AC223358) Bos taurus clone CH240-421H5, WORKING DRAFT SEQUE... 42 8.8 1 (AC181884) Strongylocentrotus purpuratus clone R3-1018M06, W... 42 8.8 1 (AC180464) Strongylocentrotus purpuratus clone R3-3102G21, W... 42 8.8 1 (AC180463) Strongylocentrotus purpuratus clone R3-3102F13, W... 42 8.8 1 (AC178877) Strongylocentrotus purpuratus clone R3-27F2, WORK... 42 8.8 1 (AC176412) Strongylocentrotus purpuratus clone R3-12J16, WOR... 42 8.8 1 (AC176235) Strongylocentrotus purpuratus clone R3-3060P13, W... 42 8.8 1 (AC174133) Strongylocentrotus purpuratus clone R3-1024I23, W... 42 8.8 1 (AC168654) Strongylocentrotus purpuratus clone R3-3017B22, W... 42 8.8 1 (AC016581) Homo sapiens chromosome 5 clone CTD-2542N23, WORK... 42 8.8 1
>(BJ393750) Dictyostelium discoideum cDNA clone:dds32b14, 5' end, single read. Length = 249
Score = 293 bits (148), Expect = 1e-75 Identities = 148/148 (100%) Strand = Plus / Plus
Query: 1 gtatttgtttgaaagtgggtgtaaatgcatgctgtttgatagagtttgtatgctgtgtgt 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 gtatttgtttgaaagtgggtgtaaatgcatgctgtttgatagagtttgtatgctgtgtgt 60
Query: 61 ttaatgggttttttgaatcctcagttcatataaaaaataatacaaaatcatttatagcag 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ttaatgggttttttgaatcctcagttcatataaaaaataatacaaaatcatttatagcag 120
Query: 121 ttagaataataattattttcaattttat 148 |||||||||||||||||||||||||||| Sbjct: 121 ttagaataataattattttcaattttat 148
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 243,213,364 Number of extensions: 17112113 Number of successful extensions: 1658467 Number of sequences better than 10.0: 136 Length of query: 249 Length of database: 95,242,211,685 Length adjustment: 23 Effective length of query: 226 Effective length of database: 93,106,754,628 Effective search space: 21042126545928 Effective search space used: 21042126545928 X1: 11 (21.8 bits) S2: 21 (42.1 bits)
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Homology vs Protein |
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