Contig-U14574-1 |
Contig ID |
Contig-U14574-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
133 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
6694832 |
End point |
6694709 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14574 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.26 |
Homology vs DNA |
Query= Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Contig-U14574-1Q.Seq.d (133 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ393755) Dictyostelium discoideum cDNA clone:dds32c13, 5' ... 159 3e-35 1 (AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 143 2e-30 1 (X95276) Plasmodium falciparum complete gene map of plastid-... 36 2e-06 5 (DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 36 3e-05 5 (DY782919) Sf1H07677-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (DY895924) SF9L00168 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DV078954) N15SFmidgut_004_5prime Spodoptera frugiperda midg... 38 0.001 2 (DY896172) SF9L00452 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY793918) pyes2-ct_017_f08.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2 (DY782921) Sf1H07679-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (DY899764) SF9L06818 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY897894) SF9L03113 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY776016) Sf1F04188-5-1 Spodoptera frugiperda Fat Body cDNA... 38 0.001 2 (DY782902) Sf1H07654-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (DV078379) B13SFmidgut_003_5prime Spodoptera frugiperda midg... 38 0.001 2 (DY897879) SF9L03097 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY897846) SF9L03052 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY787331) Sf1M01644-5-1 Spodoptera frugiperda Midgut cDNA L... 38 0.001 2 (DY780852) Sf1H04342-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (DY793686) pyes2-ct_014_a02.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2 (DY900452) SF9L07687 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY773899) Sf1F01138-5-1 Spodoptera frugiperda Fat Body cDNA... 38 0.001 2 (DY784332) Sf1H10117-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (DY794286) pyes2-ct_022_h12.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2 (DY896567) SF9L00964 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2 (DY788507) Sf1M03796-5-1 Spodoptera frugiperda Midgut cDNA L... 38 0.001 2 (DY794736) pyes2-ct_029_b03.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2 (DV077842) I2SFmidgut_013_5prime Spodoptera frugiperda midgu... 38 0.001 2 (DY785586) Sf1H02111-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2 (D88269) Homo sapiens immunoglobulin lambda gene locus DNA, ... 54 0.001 1 (D86997) Homo sapiens immunoglobulin lambda gene locus DNA, ... 54 0.001 1 (AC011351) Homo sapiens chromosome 5 clone CTC-325N22, compl... 30 0.003 3 (AC135395) Rattus norvegicus clone CH230-3H14, *** SEQUENCIN... 52 0.004 1 (AC119340) Rattus norvegicus clone CH230-354C16, *** SEQUENC... 52 0.004 1 (AC098915) Rattus norvegicus clone CH230-6A7, *** SEQUENCING... 52 0.004 1 (DU942884) 373242 Tomato EcoRI BAC Library Solanum lycopersi... 52 0.004 1 (AU267464) Dictyostelium discoideum vegetative cDNA clone:VS... 52 0.004 1 (AM634647) Entamoeba dispar GSS, clone dispar126d08.p1k. 36 0.007 2 (EK406108) 1095505003229 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.010 2 (AC131565) Homo sapiens chromosome 5 clone RP11-1273L8, comp... 30 0.010 3 (ER941282) AF__Bb0063G20f AF__Bb Aquilegia formosa genomic, ... 44 0.011 2 (AC187637) Pan troglodytes BAC clone CH251-169H19 from chrom... 34 0.012 2 (AC189498) Brassica rapa subsp. pekinensis clone KBrB086L12,... 36 0.012 2 (AC185195) Felis catus clone RP86-79H14, WORKING DRAFT SEQUE... 40 0.012 2 (AC184753) Felis catus clone RP86-63N17, WORKING DRAFT SEQUE... 40 0.012 2 (DU118680) KBrH102K10F Brassica rapa BAC library KBrH Brassi... 36 0.015 2 (BH728160) BOMHN32TF BO_2_3_KB Brassica oleracea genomic clo... 36 0.015 2 (BZ443020) BONGB77TR BO_1.6_2_KB_tot Brassica oleracea genom... 36 0.015 2 (DY776132) Sf1F04378-5-1 Spodoptera frugiperda Fat Body cDNA... 34 0.015 2 (X95275) Plasmodium falciparum complete gene map of plastid-... 36 0.017 4 (AE001419) Plasmodium falciparum 3D7 chromosome 2 section 56... 50 0.018 1 (AU072012) Dictyostelium discoideum slug cDNA, clone SSD182. 50 0.018 1 (AU037348) Dictyostelium discoideum slug cDNA, clone SSD509. 50 0.018 1 (FF335116) 280458041 Pea aphid whole body normalized full le... 50 0.018 1 (BZ386246) EINBN56TF EI_10_12_KB Entamoeba invadens genomic ... 44 0.028 2 (CG818016) SOYER77TH LargeInsertSoybeanGenLib Glycine max ge... 36 0.032 2 (AM602363) Entamoeba invadens IP1 GSS, clone inv016g12.p1k. 44 0.032 2 (CU467984) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.036 4 (AB265406) Synegia hadassa gene for 16S rRNA, partial sequence. 32 0.037 3 (AX345528) Sequence 599 from Patent WO0200928. 46 0.042 2 (AC073901) Homo sapiens BAC clone RP11-222O23 from 7, comple... 34 0.044 2 (CT009703) Zebrafish DNA sequence from clone DKEYP-32B7 in l... 40 0.045 2 (BD453073) Diagnosis of Diseases Associated with tumor suppr... 36 0.046 2 (AX251552) Sequence 520 from Patent WO0168912. 36 0.046 2 (AC116919) Dictyostelium discoideum chromosome 2 map complem... 34 0.047 2 (AG360829) Mus musculus molossinus DNA, clone:MSMg01-161G17.... 34 0.054 2 (EJ259953) 1095349032230 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.055 2 (AC016661) Arabidopsis thaliana chromosome 3 BAC F11F8 genom... 40 0.055 2 (EV218476) 0133584 Brassica napus Root - drought Brassica na... 34 0.056 2 (BZ443790) BONDC54TF BO_1.6_2_KB_tot Brassica oleracea genom... 44 0.056 2 (DY783589) Sf1H08805-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.056 2 (AC207022) Zea mays chromosome 5 clone ZMMBBb-280L8; ZMMBBb0... 46 0.059 2 (DQ389967) Anoplodactylus sp. CPA-2006 12S ribosomal RNA gen... 30 0.065 3 (CL893736) abg23f11.y1 Soybean random, unfiltered genomic li... 42 0.069 2 (CT574588) Zebrafish DNA sequence from clone CH73-36G21 in l... 48 0.070 1 (BX649351) Zebrafish DNA sequence from clone CH211-168F19 in... 48 0.070 1 (AM444539) Vitis vinifera contig VV78X270687.3, whole genome... 48 0.070 1 (AY317213) Eurytoma orchidearum 16S ribosomal RNA gene, part... 48 0.070 1 (AY317210) Bruchophagus gibbus 16S ribosomal RNA gene, parti... 48 0.070 1 (Z80771) Human DNA sequence from clone RP1-253J14 on chromos... 48 0.070 1 (AL713866) Human DNA sequence from clone RP11-309H21 on chro... 48 0.070 1 (AC023934) Homo sapiens chromosome 17, clone RP11-618P13, co... 48 0.070 1 (AC021010) Homo sapiens, clone RP11-69D2, complete sequence. 48 0.070 1 (AC203407) Zea mays chromosome 10 clone CH201-30F11; ZMMBBc0... 48 0.070 1 (AC196896) Muntiacus reevesi clone CH245-344A16, WORKING DRA... 48 0.070 1 (AC171370) Muntiacus muntjak vaginalis clone CH244-403K22, W... 48 0.070 1 (AC171147) Muntiacus reevesi clone CH245-98B23, WORKING DRAF... 48 0.070 1 (AC019189) Homo sapiens chromosome 1 clone RP11-309H21, WORK... 48 0.070 1 (CN576153) rc24d07.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 48 0.070 1 (CJ456189) Macaca fascicularis mRNA, clone: QflA-22014, 5' e... 48 0.070 1 (BM884201) rc20d07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 48 0.070 1 (AM180355) Clostridium difficile 630 complete genome. 48 0.070 1 (DX492147) Cpl33970 Papaya Genomic DNA BAC Library Carica pa... 38 0.074 3 (FD428643) Atr01b_61_C10_C010.b1 FGP Male Amborella trichopo... 44 0.087 2 (AP008146) Lotus japonicus genomic DNA, chromosome 6, clone:... 40 0.11 3 (AP009937) Lotus japonicus genomic DNA, clone: LjT09K03, TM2... 40 0.11 3 (BZ039510) lka19g03.g1 B.oleracea002 Brassica oleracea genom... 44 0.11 2 (AC209222) Populus trichocarpa clone POP017-E23, complete se... 38 0.13 4 (BX914196) Zebrafish DNA sequence from clone DKEYP-71E8 in l... 34 0.13 6 (DD010238) Estrogen receptor beta variants and methods of de... 38 0.16 2
>(BJ393755) Dictyostelium discoideum cDNA clone:dds32c13, 5' end, single read. Length = 124
Score = 159 bits (80), Expect = 3e-35 Identities = 80/80 (100%) Strand = Plus / Plus
Query: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60
Query: 61 taaaaatttaatttaacagc 80 |||||||||||||||||||| Sbjct: 61 taaaaatttaatttaacagc 80
Score = 44.1 bits (22), Expect = 1.1 Identities = 22/22 (100%) Strand = Plus / Minus
Query: 3 tatttaaataattatttaaata 24 |||||||||||||||||||||| Sbjct: 24 tatttaaataattatttaaata 3
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 159,352,363 Number of extensions: 13012495 Number of successful extensions: 4399818 Number of sequences better than 10.0: 1141 Length of query: 133 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 111 Effective length of database: 93,199,600,587 Effective search space: 10345155665157 Effective search space used: 10345155665157 X1: 11 (21.8 bits) S2: 20 (40.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
1 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |