Contig-U14574-1
Contig ID Contig-U14574-1
Contig update 2002.12.18
Contig sequence
>Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Contig-U14574-1Q.Seq.d
TATATTTAAATAATTATTTAAATAATTATACAATTTAAATATACAACTAT
TTACACCACTTAAAAATTTAATTTAACAGCAAAAAAAAAAAAAAAAAAAA
AAAAAAAAANCCCCNAAANAAAAANNNNNNNNN

Gap no gap
Contig length 133
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6694832
End point 6694709
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14574
List of clone(s)

est1=SHE150F,1,124
Translated Amino Acid sequence
yi*iii*iiiqfkyttiytt*KFNLTAKKKKKKKKKXPXXKXXX


Translated Amino Acid sequence (All Frames)
Frame A:
yi*iii*iiiqfkyttiytt*KFNLTAKKKKKKKKKXPXXKXXX


Frame B:
ifk*lfk*lynlniqlftplknli*qqkkkkkkkkkxpkxkxxx


Frame C:
ylnnylnnyti*iynylhhlki*fnskkkkkkkkkxpxxkxxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14574-1 (Contig-U14574-1Q)
/CSM_Contig/Contig-U14574-1Q.Seq.d
(133 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Conti... 159 9e-40
Contig-U04810-1 (Contig-U04810-1Q) /CSM_Contig/Conti... 50 6e-07
Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Conti... 44 4e-05
Contig-U13456-1 (Contig-U13456-1Q) /CSM_Contig/Conti... 40 5e-04
Contig-U09772-1 (Contig-U09772-1Q) /CSM_Contig/Conti... 40 5e-04
Contig-U12210-1 (Contig-U12210-1Q) /CSM_Contig/Conti... 38 0.002
Contig-U11152-1 (Contig-U11152-1Q) /CSM_Contig/Conti... 38 0.002
Contig-U14694-1 (Contig-U14694-1Q) /CSM_Contig/Conti... 36 0.009
Contig-U14578-1 (Contig-U14578-1Q) /CSM_Contig/Conti... 36 0.009
Contig-U13811-1 (Contig-U13811-1Q) /CSM_Contig/Conti... 36 0.009

>Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Contig-U14574-1Q.Seq.d
Length = 133

Score = 159 bits (80), Expect = 9e-40
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60


Query: 61 taaaaatttaatttaacagc 80
||||||||||||||||||||
Sbjct: 61 taaaaatttaatttaacagc 80


Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 3 tatttaaataattatttaaata 24
||||||||||||||||||||||
Sbjct: 24 tatttaaataattatttaaata 3


Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 10 ataattatttaaataattat 29
||||||||||||||||||||
Sbjct: 29 ataattatttaaataattat 10


>Contig-U04810-1 (Contig-U04810-1Q) /CSM_Contig/Contig-U04810-1Q.Seq.d
Length = 478

Score = 50.1 bits (25), Expect = 6e-07
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 6 ttaaataattatttaaataattata 30
|||||||||||||||||||||||||
Sbjct: 294 ttaaataattatttaaataattata 318


Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 10 ataattatttaaataattat 29
||||||||||||||||||||
Sbjct: 317 ataattatttaaataattat 298


Score = 38.2 bits (19), Expect = 0.002
Identities = 19/19 (100%)
Strand = Plus / Minus


Query: 3 tatttaaataattatttaa 21
|||||||||||||||||||
Sbjct: 312 tatttaaataattatttaa 294


Score = 30.2 bits (15), Expect = 0.53
Identities = 15/15 (100%)
Strand = Plus / Plus


Query: 3 tatttaaataattat 17
|||||||||||||||
Sbjct: 303 tatttaaataattat 317


>Contig-U05178-1 (Contig-U05178-1Q) /CSM_Contig/Contig-U05178-1Q.Seq.d
Length = 825

Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 1 tatatttaaataattatttaaa 22
||||||||||||||||||||||
Sbjct: 27 tatatttaaataattatttaaa 6


Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus


Query: 5 tttaaataattatttaaata 24
||||||||||||||||||||
Sbjct: 6 tttaaataattatttaaata 25


Score = 30.2 bits (15), Expect = 0.53
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 15 tatttaaataattat 29
|||||||||||||||
Sbjct: 25 tatttaaataattat 11


Score = 26.3 bits (13), Expect = 8.2
Identities = 13/13 (100%)
Strand = Plus / Plus


Query: 17 tttaaataattat 29
|||||||||||||
Sbjct: 6 tttaaataattat 18


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5429
Number of Sequences: 6905
Number of extensions: 5429
Number of successful extensions: 2120
Number of sequences better than 10.0: 513
length of query: 133
length of database: 5,674,871
effective HSP length: 14
effective length of query: 119
effective length of database: 5,578,201
effective search space: 663805919
effective search space used: 663805919
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2008.12.26
Homology vs DNA
Query= Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Contig-U14574-1Q.Seq.d
(133 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ393755) Dictyostelium discoideum cDNA clone:dds32c13, 5' ... 159 3e-35 1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595... 143 2e-30 1
(X95276) Plasmodium falciparum complete gene map of plastid-... 36 2e-06 5
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge... 36 3e-05 5
(DY782919) Sf1H07677-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(DY895924) SF9L00168 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DV078954) N15SFmidgut_004_5prime Spodoptera frugiperda midg... 38 0.001 2
(DY896172) SF9L00452 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY793918) pyes2-ct_017_f08.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2
(DY782921) Sf1H07679-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(DY899764) SF9L06818 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY897894) SF9L03113 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY776016) Sf1F04188-5-1 Spodoptera frugiperda Fat Body cDNA... 38 0.001 2
(DY782902) Sf1H07654-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(DV078379) B13SFmidgut_003_5prime Spodoptera frugiperda midg... 38 0.001 2
(DY897879) SF9L03097 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY897846) SF9L03052 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY787331) Sf1M01644-5-1 Spodoptera frugiperda Midgut cDNA L... 38 0.001 2
(DY780852) Sf1H04342-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(DY793686) pyes2-ct_014_a02.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2
(DY900452) SF9L07687 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY773899) Sf1F01138-5-1 Spodoptera frugiperda Fat Body cDNA... 38 0.001 2
(DY784332) Sf1H10117-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(DY794286) pyes2-ct_022_h12.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2
(DY896567) SF9L00964 Spodoptera frugiperda cDNA Cell Line Li... 38 0.001 2
(DY788507) Sf1M03796-5-1 Spodoptera frugiperda Midgut cDNA L... 38 0.001 2
(DY794736) pyes2-ct_029_b03.p1ca pYES2/CT Spodoptera frugipe... 38 0.001 2
(DV077842) I2SFmidgut_013_5prime Spodoptera frugiperda midgu... 38 0.001 2
(DY785586) Sf1H02111-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.001 2
(D88269) Homo sapiens immunoglobulin lambda gene locus DNA, ... 54 0.001 1
(D86997) Homo sapiens immunoglobulin lambda gene locus DNA, ... 54 0.001 1
(AC011351) Homo sapiens chromosome 5 clone CTC-325N22, compl... 30 0.003 3
(AC135395) Rattus norvegicus clone CH230-3H14, *** SEQUENCIN... 52 0.004 1
(AC119340) Rattus norvegicus clone CH230-354C16, *** SEQUENC... 52 0.004 1
(AC098915) Rattus norvegicus clone CH230-6A7, *** SEQUENCING... 52 0.004 1
(DU942884) 373242 Tomato EcoRI BAC Library Solanum lycopersi... 52 0.004 1
(AU267464) Dictyostelium discoideum vegetative cDNA clone:VS... 52 0.004 1
(AM634647) Entamoeba dispar GSS, clone dispar126d08.p1k. 36 0.007 2
(EK406108) 1095505003229 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.010 2
(AC131565) Homo sapiens chromosome 5 clone RP11-1273L8, comp... 30 0.010 3
(ER941282) AF__Bb0063G20f AF__Bb Aquilegia formosa genomic, ... 44 0.011 2
(AC187637) Pan troglodytes BAC clone CH251-169H19 from chrom... 34 0.012 2
(AC189498) Brassica rapa subsp. pekinensis clone KBrB086L12,... 36 0.012 2
(AC185195) Felis catus clone RP86-79H14, WORKING DRAFT SEQUE... 40 0.012 2
(AC184753) Felis catus clone RP86-63N17, WORKING DRAFT SEQUE... 40 0.012 2
(DU118680) KBrH102K10F Brassica rapa BAC library KBrH Brassi... 36 0.015 2
(BH728160) BOMHN32TF BO_2_3_KB Brassica oleracea genomic clo... 36 0.015 2
(BZ443020) BONGB77TR BO_1.6_2_KB_tot Brassica oleracea genom... 36 0.015 2
(DY776132) Sf1F04378-5-1 Spodoptera frugiperda Fat Body cDNA... 34 0.015 2
(X95275) Plasmodium falciparum complete gene map of plastid-... 36 0.017 4
(AE001419) Plasmodium falciparum 3D7 chromosome 2 section 56... 50 0.018 1
(AU072012) Dictyostelium discoideum slug cDNA, clone SSD182. 50 0.018 1
(AU037348) Dictyostelium discoideum slug cDNA, clone SSD509. 50 0.018 1
(FF335116) 280458041 Pea aphid whole body normalized full le... 50 0.018 1
(BZ386246) EINBN56TF EI_10_12_KB Entamoeba invadens genomic ... 44 0.028 2
(CG818016) SOYER77TH LargeInsertSoybeanGenLib Glycine max ge... 36 0.032 2
(AM602363) Entamoeba invadens IP1 GSS, clone inv016g12.p1k. 44 0.032 2
(CU467984) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 0.036 4
(AB265406) Synegia hadassa gene for 16S rRNA, partial sequence. 32 0.037 3
(AX345528) Sequence 599 from Patent WO0200928. 46 0.042 2
(AC073901) Homo sapiens BAC clone RP11-222O23 from 7, comple... 34 0.044 2
(CT009703) Zebrafish DNA sequence from clone DKEYP-32B7 in l... 40 0.045 2
(BD453073) Diagnosis of Diseases Associated with tumor suppr... 36 0.046 2
(AX251552) Sequence 520 from Patent WO0168912. 36 0.046 2
(AC116919) Dictyostelium discoideum chromosome 2 map complem... 34 0.047 2
(AG360829) Mus musculus molossinus DNA, clone:MSMg01-161G17.... 34 0.054 2
(EJ259953) 1095349032230 Global-Ocean-Sampling_GS-27-01-01-1... 34 0.055 2
(AC016661) Arabidopsis thaliana chromosome 3 BAC F11F8 genom... 40 0.055 2
(EV218476) 0133584 Brassica napus Root - drought Brassica na... 34 0.056 2
(BZ443790) BONDC54TF BO_1.6_2_KB_tot Brassica oleracea genom... 44 0.056 2
(DY783589) Sf1H08805-5-1 Spodoptera frugiperda Hemocytes cDN... 38 0.056 2
(AC207022) Zea mays chromosome 5 clone ZMMBBb-280L8; ZMMBBb0... 46 0.059 2
(DQ389967) Anoplodactylus sp. CPA-2006 12S ribosomal RNA gen... 30 0.065 3
(CL893736) abg23f11.y1 Soybean random, unfiltered genomic li... 42 0.069 2
(CT574588) Zebrafish DNA sequence from clone CH73-36G21 in l... 48 0.070 1
(BX649351) Zebrafish DNA sequence from clone CH211-168F19 in... 48 0.070 1
(AM444539) Vitis vinifera contig VV78X270687.3, whole genome... 48 0.070 1
(AY317213) Eurytoma orchidearum 16S ribosomal RNA gene, part... 48 0.070 1
(AY317210) Bruchophagus gibbus 16S ribosomal RNA gene, parti... 48 0.070 1
(Z80771) Human DNA sequence from clone RP1-253J14 on chromos... 48 0.070 1
(AL713866) Human DNA sequence from clone RP11-309H21 on chro... 48 0.070 1
(AC023934) Homo sapiens chromosome 17, clone RP11-618P13, co... 48 0.070 1
(AC021010) Homo sapiens, clone RP11-69D2, complete sequence. 48 0.070 1
(AC203407) Zea mays chromosome 10 clone CH201-30F11; ZMMBBc0... 48 0.070 1
(AC196896) Muntiacus reevesi clone CH245-344A16, WORKING DRA... 48 0.070 1
(AC171370) Muntiacus muntjak vaginalis clone CH244-403K22, W... 48 0.070 1
(AC171147) Muntiacus reevesi clone CH245-98B23, WORKING DRAF... 48 0.070 1
(AC019189) Homo sapiens chromosome 1 clone RP11-309H21, WORK... 48 0.070 1
(CN576153) rc24d07.x1 Meloidogyne hapla egg pAMP1 v1 Meloido... 48 0.070 1
(CJ456189) Macaca fascicularis mRNA, clone: QflA-22014, 5' e... 48 0.070 1
(BM884201) rc20d07.y1 Meloidogyne hapla egg pAMP1 v1 Meloido... 48 0.070 1
(AM180355) Clostridium difficile 630 complete genome. 48 0.070 1
(DX492147) Cpl33970 Papaya Genomic DNA BAC Library Carica pa... 38 0.074 3
(FD428643) Atr01b_61_C10_C010.b1 FGP Male Amborella trichopo... 44 0.087 2
(AP008146) Lotus japonicus genomic DNA, chromosome 6, clone:... 40 0.11 3
(AP009937) Lotus japonicus genomic DNA, clone: LjT09K03, TM2... 40 0.11 3
(BZ039510) lka19g03.g1 B.oleracea002 Brassica oleracea genom... 44 0.11 2
(AC209222) Populus trichocarpa clone POP017-E23, complete se... 38 0.13 4
(BX914196) Zebrafish DNA sequence from clone DKEYP-71E8 in l... 34 0.13 6
(DD010238) Estrogen receptor beta variants and methods of de... 38 0.16 2

>(BJ393755) Dictyostelium discoideum cDNA clone:dds32c13, 5' end,
single read.
Length = 124

Score = 159 bits (80), Expect = 3e-35
Identities = 80/80 (100%)
Strand = Plus / Plus


Query: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatatttaaataattatttaaataattatacaatttaaatatacaactatttacaccact 60


Query: 61 taaaaatttaatttaacagc 80
||||||||||||||||||||
Sbjct: 61 taaaaatttaatttaacagc 80

Score = 44.1 bits (22), Expect = 1.1
Identities = 22/22 (100%)
Strand = Plus / Minus


Query: 3 tatttaaataattatttaaata 24
||||||||||||||||||||||
Sbjct: 24 tatttaaataattatttaaata 3

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 159,352,363
Number of extensions: 13012495
Number of successful extensions: 4399818
Number of sequences better than 10.0: 1141
Length of query: 133
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 111
Effective length of database: 93,199,600,587
Effective search space: 10345155665157
Effective search space used: 10345155665157
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14574-1 (Contig-U14574-1Q) /CSM_Contig/Contig-U14574-1Q.Seq.d
(133 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.307 0.123 0.356

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 48,950,034
Number of extensions: 583249
Number of successful extensions: 145
Number of sequences better than 10.0: 0
Number of HSP's gapped: 145
Number of HSP's successfully gapped: 0
Length of query: 44
Length of database: 1,051,180,864
Length adjustment: 18
Effective length of query: 26
Effective length of database: 992,922,802
Effective search space: 25815992852
Effective search space used: 25815992852
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.39 gvh: -0.19 alm: 0.91 top: 0.53 tms: 0.00 mit: 0.39 mip: 0.00
nuc: 0.61 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

64.0 %: nuclear
28.0 %: cytoplasmic
4.0 %: mitochondrial
4.0 %: plasma membrane

>> prediction for Contig-U14574-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0