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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14564-1
Contig ID Contig-U14564-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14564-1 (Contig-U14564-1Q) /CSM_Contig/Contig-U14564-1Q.Seq.d
AATTTTCATTTATTTTGTAAATATATACAAGTTCACCCAATTTATACCCT
TATATATATATAATAATTTAAGTATGGGTGTTCCAAGATTTTTTAGATGG
GTATCAGAGAGATATCCACAAATTTTACAAAAAATATTAGATTCAAATCC
TCCCGAGTATGATAATTTATATTTGGATATGAATGGTATTATACATGCTT
GTTCACAAGAATTTGCAAATAGTTTAATAGAATTTTCAGAGGAAGAATTA
ATTCGTCAAGTTTGTAATTATGTCGATAGACTTTTTCATACAATCAGACC
AACCAAATTATTTTATATGGCAATTGATGGTGTTGCACCAAGATCAAAAA
TTAATCAACAAAGACAACGTAGATTTTTATCAGTTCACAGAGATGAGAAA
TTAAAACAGAAATTAATATCAGAAGGTAAACCTGTACCAGAGGTAATCTT
TAATAGAACTGCCATCACTCCTGGTACTCAATTCATGTATAACCTTTCTG
AATCAATTCAATTTTATATTAAAAAGAAAATATCTGAAGATTTATCTTGG
AGAGAAGTTCGAGTTATCTTTTCTGGTCNNNNNNNNN
Gap no gap
Contig length 587
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 6215148
End point 6214648
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14564
List of clone(s) 

est1=SHD414F,1,578
Translated Amino Acid sequence 
IFIYFVNIYKFTQFIPLYIYNNLSMGVPRFFRWVSERYPQILQKILDSNPPEYDNLYLDM
NGIIHACSQEFANSLIEFSEEELIRQVCNYVDRLFHTIRPTKLFYMAIDGVAPRSKINQQ
RQRRFLSVHRDEKLKQKLISEGKPVPEVIFNRTAITPGTQFMYNLSESIQFYIKKKISED
LSWREVRVIFSGXXX
Translated Amino Acid sequence (All Frames) 
Frame A:
nfhlfckyiqvhpiytliyi**fkygcskif*mgireistnftknirfkssrv**fifgy
ewyytclftrick*fnrifrgrinsssl*lcr*tfsynqtnqiilygn*wcctkikn*st
ktt*ifissqr*eikteinirr*tctrgnl**nchhswysihv*pf*insily*keni*r
filersssylfwsxx


Frame B:
IFIYFVNIYKFTQFIPLYIYNNLSMGVPRFFRWVSERYPQILQKILDSNPPEYDNLYLDM
NGIIHACSQEFANSLIEFSEEELIRQVCNYVDRLFHTIRPTKLFYMAIDGVAPRSKINQQ
RQRRFLSVHRDEKLKQKLISEGKPVPEVIFNRTAITPGTQFMYNLSESIQFYIKKKISED
LSWREVRVIFSGXXX


Frame C:
fsfil*iytsspnlypyiyiii*vwvfqdfldgyqrdihkfykky*iqilpsmiiyiwi*
mvlymlvhknlqiv**nfqrkn*fvkfvimsidffiqsdqpnyfiwqlmvlhqdqklink
dnvdfyqftemrn*nrn*yqkvnlyqr*slielpsllvlnscitflnqfnfilkrkylki
ylgekfelsflvxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14564-1 (Contig-U14564-1Q)
/CSM_Contig/Contig-U14564-1Q.Seq.d
         (587 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14564-1 (Contig-U14564-1Q) /CSM_Contig/Conti...  1074  0.0
Contig-U04538-1 (Contig-U04538-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11667-1 (Contig-U11667-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U14340-1 (Contig-U14340-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U12455-1 (Contig-U12455-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U14863-1 (Contig-U14863-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U13127-1 (Contig-U13127-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12030-1 (Contig-U12030-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11643-1 (Contig-U11643-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U11297-1 (Contig-U11297-1Q) /CSM_Contig/Conti...    34  0.16

>Contig-U14564-1 (Contig-U14564-1Q) /CSM_Contig/Contig-U14564-1Q.Seq.d
          Length = 587

 Score = 1074 bits (542), Expect = 0.0
 Identities = 566/578 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattttcatttattttgtaaatatatacaagttcacccaatttataccctnnnnnnnnnn 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 1   aattttcatttattttgtaaatatatacaagttcacccaatttatacccttatatatata 60

                                                                       
Query: 61  nnataatttaagtatgggtgttccaagattttttagatgggtatcagagagatatccaca 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  taataatttaagtatgggtgttccaagattttttagatgggtatcagagagatatccaca 120

                                                                       
Query: 121 aattttacaaaaaatattagattcaaatcctcccgagtatgataatttatatttggatat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aattttacaaaaaatattagattcaaatcctcccgagtatgataatttatatttggatat 180

                                                                       
Query: 181 gaatggtattatacatgcttgttcacaagaatttgcaaatagtttaatagaattttcaga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gaatggtattatacatgcttgttcacaagaatttgcaaatagtttaatagaattttcaga 240

                                                                       
Query: 241 ggaagaattaattcgtcaagtttgtaattatgtcgatagactttttcatacaatcagacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 ggaagaattaattcgtcaagtttgtaattatgtcgatagactttttcatacaatcagacc 300

                                                                       
Query: 301 aaccaaattattttatatggcaattgatggtgttgcaccaagatcaaaaattaatcaaca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 aaccaaattattttatatggcaattgatggtgttgcaccaagatcaaaaattaatcaaca 360

                                                                       
Query: 361 aagacaacgtagatttttatcagttcacagagatgagaaattaaaacagaaattaatatc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 aagacaacgtagatttttatcagttcacagagatgagaaattaaaacagaaattaatatc 420

                                                                       
Query: 421 agaaggtaaacctgtaccagaggtaatctttaatagaactgccatcactcctggtactca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 agaaggtaaacctgtaccagaggtaatctttaatagaactgccatcactcctggtactca 480

                                                                       
Query: 481 attcatgtataacctttctgaatcaattcaattttatattaaaaagaaaatatctgaaga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 attcatgtataacctttctgaatcaattcaattttatattaaaaagaaaatatctgaaga 540

                                                 
Query: 541 tttatcttggagagaagttcgagttatcttttctggtc 578
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 541 tttatcttggagagaagttcgagttatcttttctggtc 578


>Contig-U04538-1 (Contig-U04538-1Q) /CSM_Contig/Contig-U04538-1Q.Seq.d
          Length = 479

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 499 tgaatcaattcaattttata 518
           ||||||||||||||||||||
Sbjct: 125 tgaatcaattcaattttata 144


>Contig-U11667-1 (Contig-U11667-1Q) /CSM_Contig/Contig-U11667-1Q.Seq.d
          Length = 660

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 297 gaccaaccaaattatttta 315
           |||||||||||||||||||
Sbjct: 584 gaccaaccaaattatttta 602


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9479
Number of Sequences: 6905
Number of extensions: 9479
Number of successful extensions: 1046
Number of sequences better than 10.0: 331
length of query: 587
length of database: 5,674,871
effective HSP length: 16
effective length of query: 571
effective length of database: 5,564,391
effective search space: 3177267261
effective search space used: 3177267261
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.25
Homology vs DNA 
Query= Contig-U14564-1 (Contig-U14564-1Q) /CSM_Contig/Contig-U14564-1Q.Seq.d
         (587 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ393114) Dictyostelium discoideum cDNA clone:dds30l04, 5' ...  1023   0.0    2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...   829   0.0    3
(DB751015) Apis mellifera head cDNA, RIKEN full-length enric...    74   1e-20  3
(DB742961) Apis mellifera head cDNA, RIKEN full-length enric...    74   1e-20  3
(DB737271) Apis mellifera head cDNA, RIKEN full-length enric...    74   1e-20  3
(BI506301) BB170020B20D04.5 Bee Brain Normalized/Subtracted ...    74   2e-20  3
(DB732878) Apis mellifera head cDNA, RIKEN full-length enric...    66   2e-18  3
(DB748718) Apis mellifera head cDNA, RIKEN full-length enric...    66   2e-18  3
(DY886568) CeleSEQ2274 Cunninghamella elegans pBluescript (E...    56   1e-16  3
(DR527073) WS02723.C21_L06 SS-IL-A-FL-14 Picea sitchensis cD...    72   6e-16  2
(DB680588) Solanum lycopersicum cDNA, clone: LEFL1007DB04, 5...    56   3e-13  2
(DB724024) Solanum lycopersicum cDNA, clone: LEFL2045F18, 5'...    56   4e-13  2
(DB714159) Solanum lycopersicum cDNA, clone: LEFL2016D14, 5'...    56   4e-13  2
(DB711546) Solanum lycopersicum cDNA, clone: LEFL2008J01, 5'...    56   4e-13  2
(DB718787) Solanum lycopersicum cDNA, clone: LEFL2030A01, 5'...    56   4e-13  2
(DB733014) Apis mellifera head cDNA, RIKEN full-length enric...    54   5e-12  3
(CF542669) S014678w-024-030-M24-SP6 MPIZ-ADIS-024-leaf Beta ...    58   5e-12  2
(BQ505490) EST612905 Generation of a set of potato cDNA clon...    54   7e-11  2
(BG593830) EST492508 cSTS Solanum tuberosum cDNA clone cSTS5...    54   8e-11  2
(FE082284) LV_GL_RA21H06r Litopenaeus vannamei gills cDNA li...    56   2e-09  2
(EG684764) RCRAV18TP Castor bean cDNA library from roots, 1....    54   5e-09  2
(AL396773) T7 end of clone AR0AA032E12 of library AR0AA from...    38   1e-08  4
(AL392236) T7 end of clone AR0AA003B08 of library AR0AA from...    38   2e-08  4
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    58   2e-08  2
(FE090510) LV_GL_RA40I08r Litopenaeus vannamei gills cDNA li...    50   8e-08  2
(AM680934) Entamoeba terrapinae GSS, clone terra180h10.p1k.        42   9e-08  3
(AZ676005) ENTMS05TF Entamoeba histolytica Sheared DNA Entam...    58   3e-07  2
(AZ540965) ENTDE36TF Entamoeba histolytica Sheared DNA Entam...    58   4e-07  2
(BH132440) ENTOC36TR Entamoeba histolytica Sheared DNA Entam...    58   4e-07  2
(DT638478) EST1153409 Normalized pine embryo library, Lib_D ...    52   1e-06  2
(AM753721) Clytia hemisphaerica EST, 5' end sequence, clone ...    50   1e-06  2
(DR693873) EST1083963 Normalized pine embryo library, Lib_D ...    52   1e-06  2
(DW476168) GH_RMIRS_001_E06_R Cotton Normalized Library rand...    64   1e-06  2
(DW476167) GH_RMIRS_001_E06_F Cotton Normalized Library rand...    64   1e-06  2
(AM759184) Clytia hemisphaerica EST, 5' end sequence, clone ...    50   1e-06  2
(AM752604) Clytia hemisphaerica EST, 5' end sequence, clone ...    50   1e-06  2
(AM757913) Clytia hemisphaerica EST, 5' end sequence, clone ...    50   1e-06  2
(CU436360) Clytia hemisphaerica 5-PRIME EST from clone SA0AA...    50   1e-06  2
(AM753454) Clytia hemisphaerica EST, 5' end sequence, clone ...    50   1e-06  2
(DB881820) Populus nigra mRNA, clone: PnFL2-041_N11, 5'end.        40   1e-06  3
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    66   2e-06  1
(EL424673) CHCM4243.b1_E05.ab1 CHC(LMS) Texas blueweed Helia...    66   2e-06  1
(CP000882) Hemiselmis andersenii chromosome 2, complete sequ...    60   3e-06  5
(AM792828) Nicotiana tabacum EST, clone nt005071022.               46   3e-06  2
(DB736541) Apis mellifera head cDNA, RIKEN full-length enric...    52   3e-06  2
(AA550402) 1550m3 gmbPfHB3.1, G. Roman Reddy Plasmodium falc...    52   9e-06  2
(FG074559) UI-FF-IF0-abj-e-21-0-UI.r1 Ceratitis capitata emb...    52   2e-05  2
(AX489148) Sequence 6448 from Patent WO02053728.                   46   2e-05  2
(EH647142) AU_Cv_EST_012C_C01 Oyster mixed tissue normalized...    48   5e-05  2
(DC220853) Plasmodium berghei strain ANKA cDNA clone:MZ00330...    48   6e-05  2
(CR382135) Debaryomyces hansenii chromosome C of strain CBS7...    60   9e-05  1
(DB934659) Manihot esculenta mRNA, clone: CAS01_041_F08, 5'end.    42   2e-04  2
(CU730671) Phaeodactylum tricornutum mRNA 5-prime sequence f...    44   2e-04  2
(AZ527786) ENTCY76TF Entamoeba histolytica Sheared DNA Entam...    58   4e-04  1
(BY905088) Cryptomeria japonica cDNA clone: CMFL026_C09, 3'e...    58   4e-04  1
(BP945331) Bruguiera gymnorhiza mRNA, clone: Bg04-07_K19, 5'...    58   4e-04  1
(BJ556717) Ipomoea nil cDNA clone:jm20c18, 5' end, single read.    46   6e-04  2
(BJ553253) Ipomoea nil cDNA clone:jm10i11, 5' end, single read.    46   7e-04  2
(CJ977123) Bursaphelenchus mucronatus cDNA clone: Bm_U1_20G0...    56   0.001  1
(CJ975934) Bursaphelenchus mucronatus cDNA clone: Bm_U1_02H0...    56   0.001  1
(DB878888) Populus nigra mRNA, clone: PnFL2-025_C16, 5'end.        40   0.002  2
(DN423871) LIB4216-070-R1-K1-G1 LIB4216 Canis lupus familiar...    48   0.003  2
(DB880752) Populus nigra mRNA, clone: PnFL2-035_P12, 5'end.        40   0.003  2
(DB875834) Populus nigra mRNA, clone: PnFL2-006_J22, 5'end.        40   0.003  2
(CZ291255) cp74f05.r Candida parapsilosis Random Genomic Lib...    40   0.004  2
(AM665417) Entamoeba terrapinae GSS, clone terra007b08.q1k.        36   0.005  2
(CR382126) Kluyveromyces lactis strain NRRL Y-1140 chromosom...    54   0.006  1
(BT000175) Arabidopsis thaliana unknown protein (At1g75660) ...    54   0.006  1
(AY136383) Arabidopsis thaliana unknown protein (At1g75660) ...    54   0.006  1
(AF286719) Arabidopsis thaliana XRN3 (XRN3) mRNA, complete cds.    54   0.006  1
(ER426044) 1092963750722 Global-Ocean-Sampling_GS-35-01-01-1...    54   0.006  1
(ER417818) 1092963681221 Global-Ocean-Sampling_GS-35-01-01-1...    54   0.006  1
(CZ281972) cp19h08.f Candida parapsilosis Random Genomic Lib...    54   0.006  1
(EG682691) RCRAJ43TP Castor bean cDNA library from roots, 1....    54   0.006  1
(EG502253) AYASC80TF pooled cDNA populations Arabidopsis tha...    54   0.006  1
(BE524283) M48B1STM Arabidopsis developing seed Arabidopsis ...    54   0.006  1
(EX413505) GQ03616.B7_C21 GQ036 - Shoot tip - Active growth ...    54   0.006  1
(AV828407) Arabidopsis thaliana cDNA clone:RAFL09-27-J23, 5'...    54   0.006  1
(BJ560076) Ipomoea nil cDNA clone:jm2j18, 5' end, single read.     42   0.009  2
(DN339208) LIB3523-001-P1-K1-D4 LIB3523 Canis lupus familiar...    48   0.009  2
(DB885372) Populus nigra mRNA, clone: PnFL2-059_N22, 5'end.        34   0.012  3
(AL423346) T7 end of clone AZ0AA007H07 of library AZ0AA from...    48   0.016  2
(FI058174) CHO_OF6615xj15r1.ab1 CHO_OF6 Nicotiana tabacum ge...    52   0.023  1
(FI058094) CHO_OF6615xj15f1.ab1 CHO_OF6 Nicotiana tabacum ge...    52   0.023  1
(ET899160) CHO_OF145xj05r1.ab1 CHO_OF Nicotiana tabacum geno...    52   0.023  1
(DY906892) CHAX1583.b1_M11.ab1 CHA(XYZ) common wild sunflowe...    52   0.023  1
(DY906776) CHAX1463.b1_N06.ab1 CHA(XYZ) common wild sunflowe...    52   0.023  1
(DW151147) CLVX3007.b1_N08.ab1 CLV(XYZ) lettuce virosa Lactu...    52   0.023  1
(DW151062) CLVX2922.b1_C12.ab1 CLV(XYZ) lettuce virosa Lactu...    52   0.023  1
(DW045123) CLLX11924.b1_G05.ab1 CLL(XYZ) lettuce saligna Lac...    52   0.023  1
(CO362872) RTK1_6_F10.b1_A029 Roots minus potassium Pinus ta...    52   0.023  1
(AQ952076) Sheared DNA-39E23.TF Sheared DNA Trypanosoma bruc...    38   0.043  2
(FC230870) CAGG3436.fwd CAGG Nematostella vectensis Nemve Ea...    40   0.051  2
(FC228219) CAGG1709.fwd CAGG Nematostella vectensis Nemve Ea...    40   0.052  2
(DE905790) Macropus eugenii DNA, BAC clone: MEB1-087H11_F, 5...    50   0.090  1
(CZ930190) 247814 Tomato EcoRI BAC Library Solanum lycopersi...    50   0.090  1
(DY598003) KIDNEYF074983L10 POSSUM_01-POSSUM-KIDNEY-2KB Tric...    50   0.090  1
(DT596006) ltu01-36ms1-e23 Ltu01 Liriodendron tulipifera cDN...    50   0.090  1
(CF800044) RpL3i-III-C12 RpL3i Rhopalosiphum padi cDNA clone...    50   0.090  1
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    36   0.099  11

>(BJ393114) Dictyostelium discoideum cDNA clone:dds30l04, 5' end,
           single read.
          Length = 578

 Score = 1023 bits (516), Expect(2) = 0.0
 Identities = 516/516 (100%)
 Strand = Plus / Plus


Query: 63  ataatttaagtatgggtgttccaagattttttagatgggtatcagagagatatccacaaa 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ataatttaagtatgggtgttccaagattttttagatgggtatcagagagatatccacaaa 122


Query: 123 ttttacaaaaaatattagattcaaatcctcccgagtatgataatttatatttggatatga 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 ttttacaaaaaatattagattcaaatcctcccgagtatgataatttatatttggatatga 182


Query: 183 atggtattatacatgcttgttcacaagaatttgcaaatagtttaatagaattttcagagg 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 atggtattatacatgcttgttcacaagaatttgcaaatagtttaatagaattttcagagg 242


Query: 243 aagaattaattcgtcaagtttgtaattatgtcgatagactttttcatacaatcagaccaa 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aagaattaattcgtcaagtttgtaattatgtcgatagactttttcatacaatcagaccaa 302


Query: 303 ccaaattattttatatggcaattgatggtgttgcaccaagatcaaaaattaatcaacaaa 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ccaaattattttatatggcaattgatggtgttgcaccaagatcaaaaattaatcaacaaa 362


Query: 363 gacaacgtagatttttatcagttcacagagatgagaaattaaaacagaaattaatatcag 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gacaacgtagatttttatcagttcacagagatgagaaattaaaacagaaattaatatcag 422


Query: 423 aaggtaaacctgtaccagaggtaatctttaatagaactgccatcactcctggtactcaat 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 aaggtaaacctgtaccagaggtaatctttaatagaactgccatcactcctggtactcaat 482


Query: 483 tcatgtataacctttctgaatcaattcaattttatattaaaaagaaaatatctgaagatt 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcatgtataacctttctgaatcaattcaattttatattaaaaagaaaatatctgaagatt 542


Query: 543 tatcttggagagaagttcgagttatcttttctggtc 578
           ||||||||||||||||||||||||||||||||||||
Sbjct: 543 tatcttggagagaagttcgagttatcttttctggtc 578

 Score = 99.6 bits (50), Expect(2) = 0.0
 Identities = 50/50 (100%)
 Strand = Plus / Plus


Query: 1  aattttcatttattttgtaaatatatacaagttcacccaatttataccct 50
          ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  aattttcatttattttgtaaatatatacaagttcacccaatttataccct 50

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 819,492,072
Number of extensions: 53829130
Number of successful extensions: 4788483
Number of sequences better than 10.0: 308
Length of query: 587
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 564
Effective length of database: 93,106,754,628
Effective search space: 52512209610192
Effective search space used: 52512209610192
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14564-1 (Contig-U14564-1Q) /CSM_Contig/Contig-U14564-1Q.Seq.d
         (587 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM920436_1632(AM920436|pid:none) Penicillium chrysogenum Wiscons...   178   8e-44
AP007162_426(AP007162|pid:none) Aspergillus oryzae RIB40 genomic...   177   2e-43
AM270205_8(AM270205|pid:none) Aspergillus niger contig An09c0160...   176   3e-43
CR382126_958(CR382126|pid:none) Kluyveromyces lactis strain NRRL...   175   7e-43
CR954206_363(CR954206|pid:none) Ostreococcus tauri strain OTTH05...   172   6e-42
CR380958_251(CR380958|pid:none) Candida glabrata strain CBS138 c...   171   1e-41
CP000586_339(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...   168   9e-41
CU928169_293(CU928169|pid:none) Kluyveromyces thermotolerans str...   167   1e-40
D88026_1(D88026|pid:none) Mus musculus mRNA for Dhm2 protein, co...   166   4e-40
(P97789) RecName: Full=5'-3' exoribonuclease 1;          Short=m...   166   6e-40
CR627396_1(CR627396|pid:none) Homo sapiens mRNA; cDNA DKFZp686F1...   166   6e-40
AK142311_1(AK142311|pid:none) Mus musculus 13 days embryo heart ...   166   6e-40
(Q8IZH2) RecName: Full=5'-3' exoribonuclease 1;          EC=3.1....   166   6e-40
T30175(T30175) exoribonuclease, variant 2 - mouse  &X91617_2(X91...   166   6e-40
BC156133_1(BC156133|pid:none) Synthetic construct Mus musculus c...   166   6e-40
AK096177_1(AK096177|pid:none) Homo sapiens cDNA FLJ38858 fis, cl...   165   1e-39
(P40383) RecName: Full=5'-3' exoribonuclease 1;          EC=3.1....   164   2e-39
AJ242529_1(AJ242529|pid:none) Drosophila melanogaster mRNA for p...   163   4e-39
AC159421_6(AC159421|pid:none) Trypanosoma brucei chromosome 7 cl...   157   2e-37
CU640366_1213(CU640366|pid:none) Podospora anserina genomic DNA ...   157   2e-37
AL032634_2(AL032634|pid:none) Caenorhabditis elegans YAC Y39G8C,...   155   6e-37
CR954206_418(CR954206|pid:none) Ostreococcus tauri strain OTTH05...   155   8e-37
AM494943_24(AM494943|pid:none) Leishmania braziliensis chromosom...   152   5e-36
AC006434_15(AC006434|pid:none) Genomic sequence for Arabidopsis ...   149   7e-35
BC133743_1(BC133743|pid:none) Xenopus laevis hypothetical protei...   146   4e-34
T26774(T26774)hypothetical protein Y39G8C.b - Caenorhabditis ele...   146   5e-34
(Q5ZIP4) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   144   1e-33
AF165818_66(AF165818|pid:none) Guillardia theta nucleomorph chro...   144   1e-33
AK220711_1(AK220711|pid:none) Arabidopsis thaliana mRNA for 5'-3...   144   2e-33
(Q9FQ02) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   144   2e-33
AL844508_94(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...   144   2e-33
AF367296_1(AF367296|pid:none) Arabidopsis thaliana AT5g42540/K16...   144   2e-33
AF064257_1(AF064257|pid:none) Homo sapiens Dhm1-like protein mRN...   144   2e-33
D38517_1(D38517|pid:none) Mouse mRNA for Dhm1 protein, complete ...   144   2e-33
BX005124_1(BX005124|pid:none) Zebrafish DNA sequence from clone ...   143   3e-33
AK133654_1(AK133654|pid:none) Mus musculus adult male pituitary ...   142   7e-33
(Q9DBR1) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   142   7e-33
AK031247_1(AK031247|pid:none) Mus musculus 13 days embryo foreli...   142   7e-33
AM910989_68(AM910989|pid:none) Plasmodium knowlesi strain H chro...   142   9e-33
BC110278_1(BC110278|pid:none) Bos taurus 5'-3' exoribonuclease 2...   142   9e-33
AK001573_1(AK001573|pid:none) Homo sapiens cDNA FLJ10711 fis, cl...   141   1e-32
(Q5R4L5) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   141   1e-32
AK100381_1(AK100381|pid:none) Oryza sativa Japonica Group cDNA c...   140   3e-32
FN357330_4(FN357330|pid:none) Schistosoma mansoni genome sequenc...   139   7e-32
(Q60SG7) RecName: Full=5'-3' exoribonuclease 2 homolog;         ...   138   1e-31
(Q9U299) RecName: Full=5'-3' exoribonuclease 2 homolog;         ...   138   1e-31
T27005(T27005)hypothetical protein Y48B6A.3 - Caenorhabditis ele...   138   1e-31
HB394462_1(HB394462|pid:none) Sequence 7 from Patent WO2009067580.    138   1e-31
BX538351_20(BX538351|pid:none) Cryptosporidium parvum chromosome...   137   2e-31
AF152169_1(AF152169|pid:none) Homo sapiens DHP protein mRNA, com...   137   3e-31
AC092076_20(AC092076|pid:none) Oryza sativa chromosome 3 BAC OSJ...   135   6e-31
(Q8WZX5) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   132   9e-30
(Q02792) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   131   1e-29
AC134048_6(AC134048|pid:none) Oryza sativa (japonica cultivar-gr...   130   3e-29
AC005287_31(AC005287|pid:none) Arabidopsis thaliana chromosome I...   130   3e-29
CU928170_712(CU928170|pid:none) Kluyveromyces thermotolerans str...   130   3e-29
(Q6BNU7) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   129   4e-29
(Q4HWE2) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   129   4e-29
FN392321_863(FN392321|pid:none) Pichia pastoris GS115 chromosome...   129   4e-29
CU928174_652(CU928174|pid:none) Zygosaccharomyces rouxii strain ...   129   6e-29
(Q5AMG5) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   128   1e-28
FM992691_98(FM992691|pid:none) Candida dubliniensis CD36 chromos...   127   2e-28
(Q5KFG7) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   126   4e-28
(Q5BFH3) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   125   8e-28
(Q6FKN6) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   124   1e-27
CR940353_335(CR940353|pid:none) Theileria annulata strain Ankara...   124   2e-27
EU432100_1(EU432100|pid:none) Solanum lycopersicum putative ethy...   123   3e-27
AM920431_1213(AM920431|pid:none) Penicillium chrysogenum Wiscons...   123   3e-27
(P40848) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   123   4e-27
CU638744_158(CU638744|pid:none) Podospora anserina genomic DNA c...   122   5e-27
(Q2GNZ6) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   122   7e-27
CP001323_381(CP001323|pid:none) Micromonas sp. RCC299 chromosome...   119   5e-26
AK162848_1(AK162848|pid:none) Mus musculus adult male hypothalam...   119   6e-26
CR940348_795(CR940348|pid:none) Theileria annulata strain Ankara...   118   1e-25
AM502254_432(AM502254|pid:none) Leishmania infantum chromosome 36.    115   9e-25
CT005272_184(CT005272|pid:none) Leishmania major strain Friedlin...   115   9e-25
AY382900_1(AY382900|pid:none) Homo sapiens 5'-3' exoribonuclease...   112   7e-24
(Q6C961) RecName: Full=5'-3' exoribonuclease 2;          EC=3.1....   112   1e-23
AK302846_1(AK302846|pid:none) Homo sapiens cDNA FLJ55645 complet...   105   7e-22
AF303741_13(AF303741|pid:none) Chilo iridescent virus complete g...    95   2e-18
AL590451_78(AL590451|pid:none) chromosome IX of strain GB-M1 of ...    95   2e-18
AK303312_1(AK303312|pid:none) Homo sapiens cDNA FLJ54526 complet...    93   5e-18
AM494954_126(AM494954|pid:none) Leishmania braziliensis chromoso...    92   1e-17
AM431821_2(AM431821|pid:none) Vitis vinifera contig VV78X132425....    90   4e-17
EU643483_25(EU643483|pid:none) Adineta vaga clone Av180_A AIG1-l...    76   8e-13
DQ643392_59(DQ643392|pid:none) Aedes taeniorhynchus iridescent v...    69   1e-10
AM502239_167(AM502239|pid:none) Leishmania infantum chromosome 2...    67   5e-10
CT005262_58(CT005262|pid:none) Leishmania major strain Friedlin,...    65   1e-09
AC117075_1(AC117075|pid:none) Dictyostelium discoideum chromosom...    57   5e-07
CP000079_95(CP000079|pid:none) Leishmania major strain Friedlin ...    44   0.003
AM910986_154(AM910986|pid:none) Plasmodium knowlesi strain H chr...    44   0.004
AM494953_40(AM494953|pid:none) Leishmania braziliensis chromosom...    42   0.012
CU928171_76(CU928171|pid:none) Kluyveromyces thermotolerans stra...    38   0.23
BC131775_1(BC131775|pid:none) Homo sapiens 5'-3' exoribonuclease...    35   1.5
D49693_1(D49693|pid:none) Nilaparvata lugens reovirus genome seg...    35   2.0
AL034559_18(AL034559|pid:none) Plasmodium falciparum MAL3P7, com...    33   5.7
(Q59036) RecName: Full=Uncharacterized protein MJ1642;  &H64504(...    33   5.7
EU325694_1(EU325694|pid:none) Dasypyrum villosum isolate Dvgli2-...    33   5.7
CP000851_4189(CP000851|pid:none) Shewanella pealeana ATCC 700345...    33   7.5
AP009152_869(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c...    33   7.5
CP001348_341(CP001348|pid:none) Clostridium cellulolyticum H10, ...    33   7.5
CP001185_880(CP001185|pid:none) Thermosipho africanus TCF52B, co...    32   9.8
AM181176_1490(AM181176|pid:none) Pseudomonas fluorescens SBW25 c...    32   9.8
DQ447651_7(DQ447651|pid:none) Lake Victoria marburgvirus - DRC19...    32   9.8
CP001229_1271(CP001229|pid:none) Sulfurihydrogenibium azorense A...    32   9.8
AK123897_1(AK123897|pid:none) Homo sapiens cDNA FLJ41903 fis, cl...    32   9.8
EF218661_1(EF218661|pid:none) Aegilops tauschii clone CDS3028 al...    32   9.8
EF218656_1(EF218656|pid:none) Aegilops tauschii clone CDS3047 al...    32   9.8
DQ447650_7(DQ447650|pid:none) Lake Victoria marburgvirus - DRC19...    32   9.8

>AM920436_1632(AM920436|pid:none) Penicillium chrysogenum Wisconsin
           54-1255 complete genome, contig Pc00c21.
          Length = 1390

 Score =  178 bits (452), Expect = 8e-44
 Identities = 86/170 (50%), Positives = 119/170 (70%), Gaps = 2/170 (1%)
 Frame = +2

Query: 74  MGVPRFFRWVSERYPQILQKILDSNPPEYDNLYLDMNGIIHACSQEFANS-LIEFSEEEL 250
           MGVP+FFRW+SERYP I   I DS  PE+D+LYLDMNGIIH C+   ++S     +E+++
Sbjct: 1   MGVPKFFRWLSERYPAISMLIADSRIPEFDSLYLDMNGIIHNCTHSDSDSPTFRMTEDQM 60

Query: 251 IRQVCNYVDRLFHTIRPTKLFYMAIDGVAPRSKINQQRQRRFLSVHRDEKLKQKLISEGK 430
              + NY++ LF  I+P KLFYMA+DGVAPR+K+NQQR RRF +    E  K+K I +G
Sbjct: 61  FIAIFNYIEHLFGKIKPKKLFYMAVDGVAPRAKMNQQRARRFRTALDAENAKEKAIQQGL 120

Query: 431 PVP-EVIFNRTAITPGTQFMYNLSESIQFYIKKKISEDLSWREVRVIFSG 577
            +P E  F+   ITPGT+FM  L++ ++++I KKISED  W+ V ++ SG
Sbjct: 121 EMPKEDPFDSNCITPGTEFMQKLTKQLKYFINKKISEDTDWQGVEIVLSG 170

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 990,245,625
Number of extensions: 20472030
Number of successful extensions: 47457
Number of sequences better than 10.0: 109
Number of HSP's gapped: 47231
Number of HSP's successfully gapped: 112
Length of query: 195
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 73
Effective length of database: 656,320,666
Effective search space: 47911408618
Effective search space used: 47911408618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.85  gvh: 0.41  alm: 0.41  top: 0.53  tms: 0.00  mit: 0.35  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 32.0 %: mitochondrial
	 28.0 %: cytoplasmic
	 28.0 %: nuclear
	  4.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14564-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0