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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14562-1
Contig ID Contig-U14562-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Contig-U14562-1Q.Seq.d
TTAAATAAATATATATATATATATATATAAATAATATATTTATATTTTAA
CTTTTTTATTTTTTTTATTTTTTTTATTTTTTTTTTTAAAAAAAAANTAG
AACNCCNGANNGGGCAAAANTTAAAGAAAANGGNGAAGATGATAAANAAN
AAAAAAANGTTTTTAATAGTAATAAAAATTTAGTTAATAATAATGAATTT
AAAATTTTNCAANATAAAACTANAAGTTCATTAACATCAAAAGTTACTGG
GNGTANCATATGGTTCAAANGGTAATGTNTTTATGGCANATTCAAANGGT
ATATTTAAAGTTTTTTCACGTNAAATCNAANCTTCAAAAATATNTGATAA
ACAATTATNCNANAGTAAATTTGTTGATTTCTCAATTACAAACCTTTNCT
ATNTTGAAAAATCAAATGAAGTANTTATANCCGGNCTTGATAAANAGTAT
TATTTTACTTTTGATGTTAAATTTTTCAATTTCANATTCTACAGGTANAA
TTATGATGATATCGACAGCAAGTAANACCATAGTTAATGAGGTTANAATG
CCATCAGCAGATAACAACCAATGAAATTCTCATCGAAATGGAAAGATATT
GTTGATTTCATCAGAGGGCTACATTTTTTTGTTACAATGTTGATAGTATG
TCAATGATTCATAAATTTAAGGATTATGGTAACTTTGGATTGAATTCGAT
TACCACCCATTACATGTTCACCAAATGGTAATTATTTAGTGACAGGTTCT
CAATCTGGTATTATCAATAGTTATCGTTTCTCTGATTGTATGGAACAAAC
CACACCAAAACCATTGAAAATCATTGACTCGATCGTTTATCCAATCACTG
GTTTAGAGTTTAGTCCAAACAGTTTAATGCTTTTGGCAAGTAGTGAATTT
GATAAATTATCTTCAAAATTAATTTTATATCCATCTCATCAAACTTTTAA
AAATTTTAAACTATCATGTAAAGTTGAATCATTTTGTTTCTCTCAAAATT
CTCAAAGACTTTTAATTGGTGAAGAAGATGGTAGTTTAACATTATTAAGA
TTTAAACCTATAATTATTAATAATAATAAAAATTTTAAAAATAATAATAA
GAATAATAAAAAATATAATAATAATAAAAATAATAAAAATAATAATAAAA
ATAAAAATAATAAAAATAAAAAAAAAATAAA
Gap no gap
Contig length 1181
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 221293
End point 222478
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 3
Link to clone list U14562
List of clone(s) 

est1=SHD276E,1,1159
est2=VSF606Z,538,1183
est3=VSF606F,621,1170
Translated Amino Acid sequence 
lnkyiyiyi*iiylyfnffiffiffifffkkkxexxxgqxlkkxxkmixxkkxfliviki
*liimnlkfxxiklxvh*hqkllgvxygsxgnvfmaxsxgifkvfsrxixxskixdkqlx
xskfvdfsitnlxyxeksnevxixgldkxyyftfdvkffnfxfyrxnyddidsk*xhs**
gxnaisr*qpmkfsskwkdivdfirglhffvtmlivcq*finlrimvtld*IRLPPITCS
PNGNYLVTGSQSGIINSYRFSDCMEQTTPKPLKIIDSIVYPITGLEFSPNSLMLLASSEF
DKLSSKLILYPSHQTFKNFKLSCKVESFCFSQNSQRLLIGEEDGSLTLLRFKPIIINNNK
NFKNNNKNNKKYNNNKNNKNNNKNKNNKNKKKI
Translated Amino Acid sequence (All Frames) 
Frame A:
lnkyiyiyi*iiylyfnffiffiffifffkkkxexxxgqxlkkxxkmixxkkxfliviki
*liimnlkfxxiklxvh*hqkllgvxygsxgnvfmaxsxgifkvfsrxixxskixdkqlx
xskfvdfsitnlxyxeksnevxixgldkxyyftfdvkffnfxfyrxnyddidsk*xhs**
gxnaisr*qpmkfsskwkdivdfirglhffvtmlivcq*finlrimvtld*IRLPPITCS
PNGNYLVTGSQSGIINSYRFSDCMEQTTPKPLKIIDSIVYPITGLEFSPNSLMLLASSEF
DKLSSKLILYPSHQTFKNFKLSCKVESFCFSQNSQRLLIGEEDGSLTLLRFKPIIINNNK
NFKNNNKNNKKYNNNKNNKNNNKNKNNKNKKKI


Frame B:
*iniyiyiyk*yiyiltflfflfflffflkkx*nxxxgkx*rkxxr**xxkkxf****kf
s****i*nfxx*nxkfiniksywxxhmvqxvmxlwxiqxvylkffhvksxlqkyxinnyx
xvnllisqlqtfxxlknqmkxlxpxlixsiilllmlnfsisxstgximmistasxtivne
vxmpsadnnq*nshrngkillissegyifllqc**yvnds*i*glw*lwiefdyhplhvh
qmvii**qvlnlvlsivivslivwnkphqnh*ksltrsfiqslv*slvqtv*cfwqvvnl
inylqn*fyihlikllkilnyhvklnhfvslkilkdf*lvkkmvv*hy*dlnl*lliiik
ilkiiiriikniiiikiikiiikikiikikkk*


Frame C:
k*iyiyiyinnifif*lfyffyffyfff*kkxrtpxxakxkexgeddkxxkxvfnsnknl
vnnnefkixqxktxssltskvtgxxiwfkx*cxygxfkxyi*sfftxnxxfknx**tixx
x*ic*flnykpxlx*kik*sxyxrx**xvlfyf*c*ifqfxilqvxl**yrqqvxp*lmr
lxchqqittneiliemeryc*fhqratffcynvdsmsmihkfkdygnfglnsitthymft
kw*lfsdrfsiwyyq*lsfl*lygtnhtktienh*ldrlsnhwfrv*skqfnafgk**i*
*iifkinfisissnf*kf*tim*s*iilflskfsktfnw*rrw*fniiki*tyny****k
f*k***e**ki****k**k***k*k**k*kknk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14562-1 (Contig-U14562-1Q)
/CSM_Contig/Contig-U14562-1Q.Seq.d
         (1181 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Conti...  1479  0.0
Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Conti...    38  0.021
Contig-U13257-1 (Contig-U13257-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U09481-1 (Contig-U09481-1Q) /CSM_Contig/Conti...    36  0.084
Contig-U14713-1 (Contig-U14713-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U14322-1 (Contig-U14322-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U14183-1 (Contig-U14183-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U12918-1 (Contig-U12918-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U12384-1 (Contig-U12384-1Q) /CSM_Contig/Conti...    34  0.33
Contig-U11968-1 (Contig-U11968-1Q) /CSM_Contig/Conti...    34  0.33

>Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Contig-U14562-1Q.Seq.d
          Length = 1181

 Score = 1479 bits (746), Expect = 0.0
 Identities = 832/839 (99%)
 Strand = Plus / Plus

                                                                        
Query: 220  ctanaagttcattaacatcaaaagttactgggngtancatatggttcaaanggtaatgtn 279
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 220  ctanaagttcattaacatcaaaagttactgggngtancatatggttcaaanggtaatgtn 279

                                                                        
Query: 280  tttatggcanattcaaanggtatatttaaagttttttcacgtnaaatcnaancttcaaaa 339
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 280  tttatggcanattcaaanggtatatttaaagttttttcacgtnaaatcnaancttcaaaa 339

                                                                        
Query: 340  atatntgataaacaattatncnanagtaaatttgttgatttctcaattacaaacctttnc 399
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 340  atatntgataaacaattatncnanagtaaatttgttgatttctcaattacaaacctttnc 399

                                                                        
Query: 400  tatnttgaaaaatcaaatgaagtanttatanccggncttgataaanagtattattttact 459
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400  tatnttgaaaaatcaaatgaagtanttatanccggncttgataaanagtattattttact 459

                                                                        
Query: 460  tttgatgttaaatttttcaatttcanattctacaggtanaattatgatgatatcgacagc 519
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460  tttgatgttaaatttttcaatttcanattctacaggtanaattatgatgatatcgacagc 519

                                                                        
Query: 520  aagtaanaccatagttaatgaggttanaatgccatcagcagataacaaccaatgaaattc 579
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520  aagtaanaccatagttaatgaggttanaatgccatcagcagataacaaccaatgaaattc 579

                                                                        
Query: 580  tcatcgaaatggaaagatattgttgatttcatcagagggctacannnnnnngttacaatg 639
            ||||||||||||||||||||||||||||||||||||||||||||       |||||||||
Sbjct: 580  tcatcgaaatggaaagatattgttgatttcatcagagggctacatttttttgttacaatg 639

                                                                        
Query: 640  ttgatagtatgtcaatgattcataaatttaaggattatggtaactttggattgaattcga 699
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 640  ttgatagtatgtcaatgattcataaatttaaggattatggtaactttggattgaattcga 699

                                                                        
Query: 700  ttaccacccattacatgttcaccaaatggtaattatttagtgacaggttctcaatctggt 759
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700  ttaccacccattacatgttcaccaaatggtaattatttagtgacaggttctcaatctggt 759

                                                                        
Query: 760  attatcaatagttatcgtttctctgattgtatggaacaaaccacaccaaaaccattgaaa 819
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 760  attatcaatagttatcgtttctctgattgtatggaacaaaccacaccaaaaccattgaaa 819

                                                                        
Query: 820  atcattgactcgatcgtttatccaatcactggtttagagtttagtccaaacagtttaatg 879
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 820  atcattgactcgatcgtttatccaatcactggtttagagtttagtccaaacagtttaatg 879

                                                                        
Query: 880  cttttggcaagtagtgaatttgataaattatcttcaaaattaattttatatccatctcat 939
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 880  cttttggcaagtagtgaatttgataaattatcttcaaaattaattttatatccatctcat 939

                                                                        
Query: 940  caaacttttaaaaattttaaactatcatgtaaagttgaatcattttgtttctctcaaaat 999
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 940  caaacttttaaaaattttaaactatcatgtaaagttgaatcattttgtttctctcaaaat 999

                                                                       
Query: 1000 tctcaaagacttttaattggtgaagaagatggtagtttaacattattaagatttaaacc 1058
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 tctcaaagacttttaattggtgaagaagatggtagtttaacattattaagatttaaacc 1058


>Contig-U14187-1 (Contig-U14187-1Q) /CSM_Contig/Contig-U14187-1Q.Seq.d
          Length = 1130

 Score = 38.2 bits (19), Expect = 0.021
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 967 tgtaaagttgaatcatttt 985
           |||||||||||||||||||
Sbjct: 234 tgtaaagttgaatcatttt 216


>Contig-U13257-1 (Contig-U13257-1Q) /CSM_Contig/Contig-U13257-1Q.Seq.d
          Length = 593

 Score = 36.2 bits (18), Expect = 0.084
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 995  aaaattctcaaagacttt 1012
            ||||||||||||||||||
Sbjct: 374  aaaattctcaaagacttt 357


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,343
Number of Sequences: 6905
Number of extensions: 12343
Number of successful extensions: 1524
Number of sequences better than 10.0: 174
length of query: 1181
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1165
effective length of database: 5,564,391
effective search space: 6482515515
effective search space used: 6482515515
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.25
Homology vs DNA 
Query= Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Contig-U14562-1Q.Seq.d
         (1181 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ393292) Dictyostelium discoideum cDNA clone:dds30g20, 5' ...   650   0.0    5
(AU265490) Dictyostelium discoideum vegetative cDNA clone:VS...   801   0.0    2
(AU265489) Dictyostelium discoideum vegetative cDNA clone:VS...   642   0.0    3
(BJ405172) Dictyostelium discoideum cDNA clone:dds30g20, 3' ...   515   e-155  3
(EK537194) 1095516035807 Global-Ocean-Sampling_GS-32-01-01-1...    50   0.19   1
(EK520439) 1095515517749 Global-Ocean-Sampling_GS-32-01-01-1...    50   0.19   1
(DH122472) Oryzias latipes Fosmid clone:GOLWFno387_h01, reve...    50   0.19   1
(DH042786) Oryzias latipes Fosmid clone:GOLWFno78_m09, forwa...    50   0.19   1
(CZ921765) 1098415678212 CHORI-243 Ovis aries genomic clone ...    50   0.19   1
(CZ775810) OC__Ba0134P19.r OC__Ba Oryza coarctata genomic cl...    50   0.19   1
(AL118523) Human DNA sequence from clone RP5-1031J8 on chrom...    46   1.4    4
(AC162553) Bos taurus clone CH240-121N2, WORKING DRAFT SEQUE...    34   1.5    2
(EK111330) 1092963112354 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.0    2
(EK129473) 1093003301282 Global-Ocean-Sampling_GS-31-01-01-1...    34   2.0    2
(ER519577) 1093015552005 Global-Ocean-Sampling_GS-35-01-01-1...    36   2.9    2
(CR536604) Zebrafish DNA sequence from clone DKEY-57A22 in l...    46   3.0    1
(BX248325) Zebrafish DNA sequence from clone CH211-233I11 in...    46   3.0    1
(EA710140) Sequence 89019 from patent US 7365185.                  46   3.0    1
(Z71264) Caenorhabditis elegans Cosmid K07G5.                      46   3.0    1
(AC187478) Gossypium hirsutum chromosome UNKNOWN clone ZMMBB...    46   3.0    1
(ER350999) 1092347000307 Global-Ocean-Sampling_GS-34-01-01-1...    46   3.0    1
(AL748978) Danio rerio genomic clone DKEY-1C24, genomic surv...    46   3.0    1
(AL742884) Danio rerio genomic clone DKEY-1G24, genomic surv...    46   3.0    1
(EI327670) GM_WBc0065L13.r GM_WBc Glycine max genomic clone ...    46   3.0    1
(CZ787412) OC__Ba0151C22.f OC__Ba Oryza coarctata genomic cl...    46   3.0    1
(CZ777797) OC__Ba0137O15.f OC__Ba Oryza coarctata genomic cl...    46   3.0    1
(CZ726327) OC__Ba0053I22.r OC__Ba Oryza coarctata genomic cl...    46   3.0    1
(BQ585970) E012531-024-014-A11-SP6 MPIZ-ADIS-024-leaf Beta v...    46   3.0    1
(BQ505346) EST612761 Generation of a set of potato cDNA clon...    38   4.0    3
(AC113760) Rattus norvegicus clone CH230-101A13, WORKING DRA...    32   5.5    2
(AC135589) Rattus norvegicus clone CH230-6F7, WORKING DRAFT ...    32   5.5    2
(AC177666) Strongylocentrotus purpuratus clone R3-1017J20, W...    34   5.7    2
(EJ618193) 1092963038758 Global-Ocean-Sampling_GS-29-01-01-1...    36   5.7    3
(AM431678) Vitis vinifera contig VV79X004407.5, whole genome...    44   5.8    2
(AC157964) Strongylocentrotus purpuratus clone R3-4002D6, WO...    34   6.1    2
(AC125133) Mus musculus BAC clone RP24-316A22 from chromosom...    36   6.1    4
(AZ715007) RPCI-24-120C10.TJ RPCI-24 Mus musculus genomic cl...    40   6.5    2
(AM488263) Vitis vinifera contig VV78X098650.16, whole genom...    44   6.8    2
(AP002962) Homo sapiens genomic DNA, chromosome 11q clone:RP...    38   6.9    2
(DV615670) EST1218666 Glossina morsitans morsitans Fat body ...    34   7.5    2
(EJ701715) 1092956038540 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.5    2
(DV620431) EST1223427 Glossina morsitans morsitans Fat body ...    34   7.5    2
(DV619349) EST1222345 Glossina morsitans morsitans Fat body ...    34   7.5    2
(EJ674355) 1092955072188 Global-Ocean-Sampling_GS-30-02-01-1...    32   7.5    2
(EC822848) SME00007629 esmbsro2 Sawyeria marylandensis cDNA,...    34   7.7    2
(AM423679) Vitis vinifera contig VV78X078339.7, whole genome...    40   8.5    3
(DE362330) Bombyx mori genomic DNA, BAC clone:BET_604_D20.         42   9.5    2

>(BJ393292) Dictyostelium discoideum cDNA clone:dds30g20, 5' end,
            single read.
          Length = 681

 Score =  650 bits (328), Expect(5) = 0.0
 Identities = 328/328 (100%)
 Strand = Plus / Minus


Query: 707  ccattacatgttcaccaaatggtaattatttagtgacaggttctcaatctggtattatca 766
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452  ccattacatgttcaccaaatggtaattatttagtgacaggttctcaatctggtattatca 393


Query: 767  atagttatcgtttctctgattgtatggaacaaaccacaccaaaaccattgaaaatcattg 826
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392  atagttatcgtttctctgattgtatggaacaaaccacaccaaaaccattgaaaatcattg 333


Query: 827  actcgatcgtttatccaatcactggtttagagtttagtccaaacagtttaatgcttttgg 886
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332  actcgatcgtttatccaatcactggtttagagtttagtccaaacagtttaatgcttttgg 273


Query: 887  caagtagtgaatttgataaattatcttcaaaattaattttatatccatctcatcaaactt 946
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272  caagtagtgaatttgataaattatcttcaaaattaattttatatccatctcatcaaactt 213


Query: 947  ttaaaaattttaaactatcatgtaaagttgaatcattttgtttctctcaaaattctcaaa 1006
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212  ttaaaaattttaaactatcatgtaaagttgaatcattttgtttctctcaaaattctcaaa 153


Query: 1007 gacttttaattggtgaagaagatggtag 1034
            ||||||||||||||||||||||||||||
Sbjct: 152  gacttttaattggtgaagaagatggtag 125

 Score =  153 bits (77), Expect(5) = 0.0
 Identities = 77/77 (100%)
 Strand = Plus / Minus


Query: 631 gttacaatgttgatagtatgtcaatgattcataaatttaaggattatggtaactttggat 690
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 gttacaatgttgatagtatgtcaatgattcataaatttaaggattatggtaactttggat 468


Query: 691 tgaattcgattaccacc 707
           |||||||||||||||||
Sbjct: 467 tgaattcgattaccacc 451

 Score =  147 bits (74), Expect(5) = 0.0
 Identities = 82/86 (95%)
 Strand = Plus / Minus


Query: 476 tcaatttcanattctacaggtanaattatgatgatatcgacagcaagtaanaccatagtt 535
           ||||||||| |||||||||||| ||||||||||||||||||||||||||| |||||||||
Sbjct: 681 tcaatttcagattctacaggtagaattatgatgatatcgacagcaagtaagaccatagtt 622


Query: 536 aatgaggttanaatgccatcagcaga 561
           |||||||||| |||||||||||||||
Sbjct: 621 aatgaggttagaatgccatcagcaga 596

 Score = 73.8 bits (37), Expect(5) = 0.0
 Identities = 37/37 (100%)
 Strand = Plus / Minus


Query: 587 aatggaaagatattgttgatttcatcagagggctaca 623
           |||||||||||||||||||||||||||||||||||||
Sbjct: 570 aatggaaagatattgttgatttcatcagagggctaca 534

 Score = 38.2 bits (19), Expect(5) = 0.0
 Identities = 19/19 (100%)
 Strand = Plus / Minus


Query: 569 caatgaaattctcatcgaa 587
           |||||||||||||||||||
Sbjct: 587 caatgaaattctcatcgaa 569

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 888,260,990
Number of extensions: 56626388
Number of successful extensions: 4845507
Number of sequences better than 10.0: 48
Length of query: 1181
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1157
Effective length of database: 97,308,875,965
Effective search space: 112586369491505
Effective search space used: 112586369491505
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14562-1 (Contig-U14562-1Q) /CSM_Contig/Contig-U14562-1Q.Seq.d
         (1181 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q5SSI6) RecName: Full=U3 small nucleolar RNA-associated protein...    75   5e-12
AK078033_1(AK078033|pid:none) Mus musculus 11 days embryo head c...    75   5e-12
BT044863_1(BT044863|pid:none) Salmo salar clone ssal-rgf-505-369...    74   1e-11
(Q9Y5J1) RecName: Full=U3 small nucleolar RNA-associated protein...    73   2e-11
BC146062_1(BC146062|pid:none) Bos taurus UTP18, small subunit (S...    72   5e-11
BC097862_1(BC097862|pid:none) Xenopus laevis hypothetical protei...    70   1e-10
AF151806_1(AF151806|pid:none) Homo sapiens CGI-48 protein mRNA, ...    69   2e-10
CR382138_708(CR382138|pid:none) Debaryomyces hansenii strain CBS...    67   9e-10
BC121510_1(BC121510|pid:none) Xenopus tropicalis WD repeat domai...    67   2e-09
AP006852_388(AP006852|pid:none) Candida albicans genomic DNA, ch...    65   4e-09
(P42000) RecName: Full=U3 small nucleolar RNA-associated protein...    63   2e-08
D89098_1(D89098|pid:none) Schizosaccharomyces pombe mRNA, partia...    61   9e-08
(P78750) RecName: Full=Probable U3 small nucleolar RNA-associate...    61   9e-08
(Q9V7P1) RecName: Full=U3 small nucleolar RNA-associated protein...    55   5e-06
AE016818_194(AE016818|pid:none) Ashbya gossypii (= Eremothecium ...    55   5e-06
AM920437_834(AM920437|pid:none) Penicillium chrysogenum Wisconsi...    54   1e-05
CU928180_465(CU928180|pid:none) Kluyveromyces thermotolerans str...    53   2e-05
CR382126_86(CR382126|pid:none) Kluyveromyces lactis strain NRRL ...    52   3e-05
CR382132_1292(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    49   1e-04
FN392320_600(FN392320|pid:none) Pichia pastoris GS115 chromosome...    49   5e-04
AP007154_635(AP007154|pid:none) Aspergillus oryzae RIB40 genomic...    49   5e-04
AK112078_1(AK112078|pid:none) Oryza sativa Japonica Group cDNA c...    47   0.001
AC149489_11(AC149489|pid:none) Medicago truncatula chromosome 2 ...    47   0.002
CP000582_290(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    46   0.003
AK340327_1(AK340327|pid:none) Acyrthosiphon pisum ACYPI005157 mR...    45   0.004
AC123898_22(AC123898|pid:none) Medicago truncatula clone mth2-31...    45   0.004
BT035860_1(BT035860|pid:none) Zea mays full-length cDNA clone ZM...    44   0.009
CU633438_837(CU633438|pid:none) Podospora anserina genomic DNA c...    43   0.019
AY087732_1(AY087732|pid:none) Arabidopsis thaliana clone 38057 m...    43   0.025
CP001344_497(CP001344|pid:none) Cyanothece sp. PCC 7425, complet...    42   0.032
CP000828_1004(CP000828|pid:none) Acaryochloris marina MBIC11017,...    41   0.094
AF127799_1(AF127799|pid:none) Homo sapiens G protein beta subuni...    41   0.094
AK153862_1(AK153862|pid:none) Mus musculus 2 days neonate thymus...    40   0.12
DQ213259_1(DQ213259|pid:none) Taeniopygia guttata clone 0061P001...    40   0.12
(Q6P5M2) RecName: Full=WD repeat-containing protein 61;  &BC0628...    40   0.12
(Q4V7A0) RecName: Full=WD repeat-containing protein 61;  &BC0980...    40   0.12
BT050222_1(BT050222|pid:none) Salmo salar clone ssal-sjb-015-257...    40   0.12
(Q9ERF3) RecName: Full=WD repeat-containing protein 61; AltName:...    40   0.12
EF215228_1(EF215228|pid:none) Callithrix jacchus clone E23-52.1_...    40   0.12
(Q5ZJH5) RecName: Full=WD repeat-containing protein 61;  &AJ7204...    40   0.12
DQ311233_1(DQ311233|pid:none) Bombyx mori WD repeat domain 61 mR...    40   0.12
(Q6PBD6) RecName: Full=WD repeat-containing protein 61;  &BC0597...    40   0.12
AK012342_1(AK012342|pid:none) Mus musculus 11 days embryo whole ...    40   0.12
AM269992_4(AM269992|pid:none) Aspergillus niger contig An01c0460...    39   0.36
AY064077_1(AY064077|pid:none) Aedes aegypti clone unKRc2 unknown...    39   0.36
AE014297_3432(AE014297|pid:none) Drosophila melanogaster chromos...    39   0.47
AF326339_1(AF326339|pid:none) Aedes aegypti unknown protein i8 m...    38   0.61
AF326340_1(AF326340|pid:none) Aedes aegypti unknown protein i8 m...    38   0.61
GN097432_1(GN097432|pid:none) Sequence 2213 from Patent WO200903...    38   0.61
(Q6GMD2) RecName: Full=WD repeat-containing protein 61;  &BC0741...    37   1.0
AB174681_1(AB174681|pid:none) Macaca fascicularis brain cDNA clo...    37   1.0
AE014297_1106(AE014297|pid:none) Drosophila melanogaster chromos...    37   1.0
(Q9P2S5) RecName: Full=WD repeat-containing protein 8;  &AB03491...    37   1.8
AL136528_8(AL136528|pid:none) Human DNA sequence from clone RP5-...    37   1.8
AP009552_5491(AP009552|pid:none) Microcystis aeruginosa NIES-843...    37   1.8
CP000807_36(CP000807|pid:none) Cyanothece sp. ATCC 51142 linear ...    37   1.8
AY597210_1(AY597210|pid:none) Chlamydomonas reinhardtii katanin ...    36   2.3
AC004684_17(AC004684|pid:none) Arabidopsis thaliana chromosome 2...    36   3.0
CP000845_57(CP000845|pid:none) Acaryochloris marina MBIC11017 pl...    36   3.0
BX842626_16(BX842626|pid:none) Neurospora crassa DNA linkage gro...    35   4.0
BC082062_1(BC082062|pid:none) Rattus norvegicus WD repeat domain...    35   4.0
AC128644_12(AC128644|pid:none) Oryza sativa (japonica cultivar-g...    35   4.0
CP000806_3920(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu...    35   4.0
(Q9JM98) RecName: Full=WD repeat-containing protein 8;  &AB03491...    35   4.0
BC016120_1(BC016120|pid:none) Mus musculus WD repeat domain 8, m...    35   4.0
CP000686_3296(CP000686|pid:none) Roseiflexus sp. RS-1, complete ...    35   5.2
CU928180_653(CU928180|pid:none) Kluyveromyces thermotolerans str...    35   5.2
AF306867_1(AF306867|pid:none) Aedes triseriatus unknown mRNA.          35   5.2
CR954202_55(CR954202|pid:none) Ostreococcus tauri strain OTTH059...    35   6.8
CP001291_699(CP001291|pid:none) Cyanothece sp. PCC 7424, complet...    35   6.8
BA000039_1497(BA000039|pid:none) Thermosynechococcus elongatus B...    35   6.8
(Q93847) RecName: Full=Uncharacterized WD repeat-containing prot...    34   8.8
AE017347_451(AE017347|pid:none) Cryptococcus neoformans var. neo...    34   8.8
AP009510_13(AP009510|pid:none) Uncultured Termite group 1 bacter...    34   8.8
AE1810(AE1810) WD-40 repeat protein [imported] - Nostoc sp. (str...    34   8.8
CP001344_1358(CP001344|pid:none) Cyanothece sp. PCC 7425, comple...    34   8.8

>(Q5SSI6) RecName: Full=U3 small nucleolar RNA-associated protein 18
            homolog; AltName: Full=WD repeat-containing protein 50;
            &AK154637_1(AK154637|pid:none)
            &AL663078_1(AL663078|pid:none)
            &BC119621_1(BC119621|pid:none)
            &BC119622_1(BC119622|pid:none)
          Length = 552

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 41/119 (34%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
 Frame = +1

Query: 709  ITCSPNGNYLVTGSQSGIINSYRFSDCMEQTTPKPLKIIDSIVYPITGLEFSPNSLMLLA 888
            I  S NG Y+  GS+SG++N Y    C++QT PKP+K I ++V  +T L F+P + +L
Sbjct: 427  IAASKNGQYVACGSKSGVVNIYNQDSCLQQTNPKPIKAIMNLVTGVTSLAFNPTTEILAV 486

Query: 889  SSEFDKLSSKLILYPSHQTFKNFKLSCK-----VESFCFSQNSQRLLIGEEDGSLTLLR 1050
            +S   K + +L+  PS   F NF +  K     V++  FS       +G E G   + R
Sbjct: 487  ASRKMKEAVRLVHLPSCTVFSNFPVFKKSTLSRVQTMDFSPRGGYFALGNEKGRALMYR 545

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,108,504,452
Number of extensions: 17724108
Number of successful extensions: 75358
Number of sequences better than 10.0: 76
Number of HSP's gapped: 75317
Number of HSP's successfully gapped: 79
Length of query: 393
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 262
Effective length of database: 627,191,635
Effective search space: 164324208370
Effective search space used: 164324208370
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.85  gvh: 0.35  alm: 0.45  top: 0.47  tms: 0.00  mit: 0.37  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.80  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 36.0 %: mitochondrial
	  8.0 %: cytoplasmic
	  4.0 %: extracellular, including cell wall
	  4.0 %: endoplasmic reticulum
	  4.0 %: peroxisomal

>> prediction for Contig-U14562-1 is nuc
VS (DIR, S) 1
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0