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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14530-1
Contig ID Contig-U14530-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14530-1 (Contig-U14530-1Q) /CSM_Contig/Contig-U14530-1Q.Seq.d
CTGGGTACCGGGCCCCCCCTTTACACTCTTTGCTTTTTAATTATCTTAAT
TAACCAAATACAGAAATGACAATAACCAATTATCCATTTGTTACTGGTTC
AAACCTTACATCACCATGCGATATTCCTCGTGTCGCTCTTCTTGCTTATA
CAAACCAAAGTCTTGCATTAAATGCTGCTGGAGGTACAATTGAAAGCGCA
TCAGATTTATTCTCAATCACTCTTTGCAAATATTATTTGAATAGCGTCGT
TTCTCTCTCTCCAACCAATGTATTTGGTGGTGTTGCACATTATTCCAGTT
TAACAACACTTATGAATAATCTTGACTCTGCCGCTGATACCATTCTCAAT
GCACTCTACGCATCCATCAATACTTGTGGTACTTTCACTGATTTGACTGC
AACAAAATTCGACACACTCTCAACAGCCTTTAGTGGTTATAGAACAACTA
TTTTATCACTCCAAACTAGTTCTAATACTTTAAAAACAGCAATCACTACA
ACCAGAGACAGTTTAACATTGACCACTGACATTTATAACACTGTAAAAAC
ATGTTACACAAATGTTATCACTGCTTTAGAAGGGTTTGAGTGCTCGTTTG
GGTCAAGTTGCATCTTTACTTAATACTCATAACGCAAATTTCCCAACATT
TAAGGATAATGTTACCTCTTATACTGATCCAGAAGGTCCAGGTGATCAAA
GCAATTATATGTCTTCAATGAACTATTCCATGGTTACTTATTTGATTAGC
TCAAATACCATTTTTTCAAAACTTTATTTTTATAAAAGATTACGTGGTGT
TATCTTTTAAATATATTAAATTTAATTTAATTAAATAGATCTGTAATTTT
AGAAAAGATTCATAAAAATAAATAAATAAAGAAATTGTCTTCTTTTAA
Gap no gap
Contig length 898
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 3482409
End point 3483290
Strand (PLUS/MINUS) PLUS
Number of clones 3
Number of EST 3
Link to clone list U14530
List of clone(s) 

est1=VSG461E,1,869
est2=SHA285E,4,899
est3=VHJ102E,5,899
Translated Amino Acid sequence 
gyrapplhsllfnyln*PNTEMTITNYPFVTGSNLTSPCDIPRVALLAYTNQSLALNAAG
GTIESASDLFSITLCKYYLNSVVSLSPTNVFGGVAHYSSLTTLMNNLDSAADTILNALYA
SINTCGTFTDLTATKFDTLSTAFSGYRTTILSLQTSSNTLKTAITTTRDSLTLTTDIYNT
VKTCYTNVITALEGFECSFGSSCIFT*ys*rkfpni*g*cylly*srrsr*skqlyvfne
lfhgylfd*lkyhffktlfl*kitwcyllnilnli*lnrsvilekihknk*ikklssf
Translated Amino Acid sequence (All Frames) 
Frame A:
lgtgpplytlcfliilinqiqk*q*piihlllvqtlhhhaiflvslflliqtkvlh*mll
evqlkahqiysqslfanii*iasflslqpmylvvlhiipv*qhl*iiltlplipfsmhst
hpsilvvlsli*lqqnsthsqqplvvieqlfyhsklvlil*kqqslqpetv*h*pltfit
l*khvtqmlsll*kglsarlgqvasllnthnanfptfkdnvtsytdpegpgdqsnymssm
nysmvtylissntifsklyfykrlrgvif*iy*i*fn*idl*f*krfikink*rnclll


Frame B:
wvpgppftlfaf*ls*ltkyrndnnqlsicywfkpyitmrysscrssclykpkscikccw
ryn*krirfilnhslqilfe*rrfslsnqciwwcctlfqfnntye*s*lcr*yhsqctlr
ihqylwyfh*fdcnkirhtlnsl*wl*nnyfitpn*f*yfknsnhynqrqfnidh*hl*h
cknmlhkcyhcfrrv*vlvwvklhlylilitqisqhlrimlpliliqkvqvikaiiclq*
tipwlli*laqipffqnfifikdyvvlsfkyikfnlik*icnfrkds*k*inkeivff*


Frame C:
gyrapplhsllfnyln*PNTEMTITNYPFVTGSNLTSPCDIPRVALLAYTNQSLALNAAG
GTIESASDLFSITLCKYYLNSVVSLSPTNVFGGVAHYSSLTTLMNNLDSAADTILNALYA
SINTCGTFTDLTATKFDTLSTAFSGYRTTILSLQTSSNTLKTAITTTRDSLTLTTDIYNT
VKTCYTNVITALEGFECSFGSSCIFT*ys*rkfpni*g*cylly*srrsr*skqlyvfne
lfhgylfd*lkyhffktlfl*kitwcyllnilnli*lnrsvilekihknk*ikklssf
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14530-1 (Contig-U14530-1Q)
/CSM_Contig/Contig-U14530-1Q.Seq.d
         (898 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14530-1 (Contig-U14530-1Q) /CSM_Contig/Conti...  1584  0.0
Contig-U06716-1 (Contig-U06716-1Q) /CSM_Contig/Conti...    38  0.016
Contig-U14731-1 (Contig-U14731-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11922-1 (Contig-U11922-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11146-1 (Contig-U11146-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U02520-1 (Contig-U02520-1Q) /CSM_Contig/Conti...    36  0.063
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U09244-1 (Contig-U09244-1Q) /CSM_Contig/Conti...    34  0.25
Contig-U14684-1 (Contig-U14684-1Q) /CSM_Contig/Conti...    32  0.99
Contig-U14636-1 (Contig-U14636-1Q) /CSM_Contig/Conti...    32  0.99

>Contig-U14530-1 (Contig-U14530-1Q) /CSM_Contig/Contig-U14530-1Q.Seq.d
          Length = 898

 Score = 1584 bits (799), Expect = 0.0
 Identities = 799/799 (100%)
 Strand = Plus / Plus

                                                                       
Query: 20  tttacactctttgctttttaattatcttaattaaccaaatacagaaatgacaataaccaa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20  tttacactctttgctttttaattatcttaattaaccaaatacagaaatgacaataaccaa 79

                                                                       
Query: 80  ttatccatttgttactggttcaaaccttacatcaccatgcgatattcctcgtgtcgctct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 80  ttatccatttgttactggttcaaaccttacatcaccatgcgatattcctcgtgtcgctct 139

                                                                       
Query: 140 tcttgcttatacaaaccaaagtcttgcattaaatgctgctggaggtacaattgaaagcgc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 140 tcttgcttatacaaaccaaagtcttgcattaaatgctgctggaggtacaattgaaagcgc 199

                                                                       
Query: 200 atcagatttattctcaatcactctttgcaaatattatttgaatagcgtcgtttctctctc 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 atcagatttattctcaatcactctttgcaaatattatttgaatagcgtcgtttctctctc 259

                                                                       
Query: 260 tccaaccaatgtatttggtggtgttgcacattattccagtttaacaacacttatgaataa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tccaaccaatgtatttggtggtgttgcacattattccagtttaacaacacttatgaataa 319

                                                                       
Query: 320 tcttgactctgccgctgataccattctcaatgcactctacgcatccatcaatacttgtgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcttgactctgccgctgataccattctcaatgcactctacgcatccatcaatacttgtgg 379

                                                                       
Query: 380 tactttcactgatttgactgcaacaaaattcgacacactctcaacagcctttagtggtta 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tactttcactgatttgactgcaacaaaattcgacacactctcaacagcctttagtggtta 439

                                                                       
Query: 440 tagaacaactattttatcactccaaactagttctaatactttaaaaacagcaatcactac 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tagaacaactattttatcactccaaactagttctaatactttaaaaacagcaatcactac 499

                                                                       
Query: 500 aaccagagacagtttaacattgaccactgacatttataacactgtaaaaacatgttacac 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 aaccagagacagtttaacattgaccactgacatttataacactgtaaaaacatgttacac 559

                                                                       
Query: 560 aaatgttatcactgctttagaagggtttgagtgctcgtttgggtcaagttgcatctttac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 aaatgttatcactgctttagaagggtttgagtgctcgtttgggtcaagttgcatctttac 619

                                                                       
Query: 620 ttaatactcataacgcaaatttcccaacatttaaggataatgttacctcttatactgatc 679
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 ttaatactcataacgcaaatttcccaacatttaaggataatgttacctcttatactgatc 679

                                                                       
Query: 680 cagaaggtccaggtgatcaaagcaattatatgtcttcaatgaactattccatggttactt 739
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 cagaaggtccaggtgatcaaagcaattatatgtcttcaatgaactattccatggttactt 739

                                                                       
Query: 740 atttgattagctcaaataccattttttcaaaactttatttttataaaagattacgtggtg 799
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 atttgattagctcaaataccattttttcaaaactttatttttataaaagattacgtggtg 799

                              
Query: 800 ttatcttttaaatatatta 818
           |||||||||||||||||||
Sbjct: 800 ttatcttttaaatatatta 818


 Score = 36.2 bits (18), Expect = 0.063
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 881 gaaattgtcttcttttaa 898
           ||||||||||||||||||
Sbjct: 881 gaaattgtcttcttttaa 898


>Contig-U06716-1 (Contig-U06716-1Q) /CSM_Contig/Contig-U06716-1Q.Seq.d
          Length = 180

 Score = 38.2 bits (19), Expect = 0.016
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 769 aaactttatttttataaaa 787
           |||||||||||||||||||
Sbjct: 65  aaactttatttttataaaa 83


 Score = 30.2 bits (15), Expect = 3.9
 Identities = 15/15 (100%)
 Strand = Plus / Minus

                          
Query: 773 tttatttttataaaa 787
           |||||||||||||||
Sbjct: 88  tttatttttataaaa 74


>Contig-U14731-1 (Contig-U14731-1Q) /CSM_Contig/Contig-U14731-1Q.Seq.d
          Length = 492

 Score = 36.2 bits (18), Expect = 0.063
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                             
Query: 764 tttcaaaactttattttt 781
           ||||||||||||||||||
Sbjct: 394 tttcaaaactttattttt 377


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9031
Number of Sequences: 6905
Number of extensions: 9031
Number of successful extensions: 725
Number of sequences better than 10.0: 67
length of query: 898
length of database: 5,674,871
effective HSP length: 16
effective length of query: 882
effective length of database: 5,564,391
effective search space: 4907792862
effective search space used: 4907792862
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.25
Homology vs DNA 
Query= Contig-U14530-1 (Contig-U14530-1Q) /CSM_Contig/Contig-U14530-1Q.Seq.d
         (898 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ391698) Dictyostelium discoideum cDNA clone:dds24i22, 5' ...  1304   0.0    1
(BJ423381) Dictyostelium discoideum cDNA clone:ddv49c01, 5' ...  1118   0.0    2
(BJ403351) Dictyostelium discoideum cDNA clone:dds24i22, 3' ...   868   0.0    2
(BJ442157) Dictyostelium discoideum cDNA clone:ddv49c01, 3' ...   837   0.0    2
(AU266518) Dictyostelium discoideum vegetative cDNA clone:VS...   630   0.0    2
(AU266517) Dictyostelium discoideum vegetative cDNA clone:VS...   963   0.0    1
(AC162278) Medicago truncatula clone mth2-80d11, WORKING DRA...    40   0.40   4
(AC187304) Canis Familiaris chromosome 16, clone XX-195I11, ...    46   2.3    1
(ED616025) GM_WBa0008K20.f GM_WBa Glycine max genomic clone ...    38   5.3    2
(AM681325) Entamoeba terrapinae GSS, clone terra212d03.p1k.        32   5.8    2
(DY339153) OB_SEa09K06.r OB_SEa Ocimum basilicum cDNA clone ...    32   5.8    2
(DH235833) Oryzias latipes Fosmid clone:GOLWFno506_f15, forw...    32   6.0    2
(EU579861) Muromegalovirus C4A, complete genome.                   44   9.0    1
(AC096784) Mus musculus strain C57BL/6J chromosome 10 clone ...    44   9.0    1
(AK118837) Arabidopsis thaliana At5g18760 mRNA for unknown p...    44   9.0    1
(EF114225) Ovis aries COL1A2 protein (COL1A2) gene, partial ...    44   9.0    1
(CP000184) Drosophila melanogaster genomic scaffold 21100002...    44   9.0    1
(AC027678) Homo sapiens chromosome 10 clone RP11-97A17, comp...    44   9.0    1
(AC022390) Homo sapiens chromosome 10 clone RP11-131N11, com...    44   9.0    1
(AC160689) Bos taurus clone CH240-93N12, WORKING DRAFT SEQUE...    44   9.0    1
(AC154930) Carollia perspicillata clone 481O17, WORKING DRAF...    44   9.0    1
(AC154929) Carollia perspicillata clone 471N3, WORKING DRAFT...    44   9.0    1
(AC132732) Rattus norvegicus clone CH230-344C16, *** SEQUENC...    44   9.0    1
(AC119372) Rattus norvegicus clone CH230-454F8, *** SEQUENCI...    44   9.0    1
(AC166292) Bos taurus clone CH240-191L22, WORKING DRAFT SEQU...    44   9.0    1
(ET658719) MUGQ_CH252P443M22Sp6_CP850_083 CHORI-252 Vervet M...    44   9.0    1
(ER879456) MUGQ_CH252P270O19Sp6_CN564_066 CHORI-252 Vervet M...    44   9.0    1
(ER454899) 1092963864149 Global-Ocean-Sampling_GS-35-01-01-1...    44   9.0    1
(EL965466) CF_WO0_46d02_SP6 Copepod Whole Organism, Normaliz...    44   9.0    1
(BX870068) AGENAE Rainbow trout multi-tissues-normalized + 2...    44   9.0    1
(N70780) za72h01.s1 Soares_fetal_lung_NbHL19W Homo sapiens c...    44   9.0    1
(EY389931) CAXA8463.fwd CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY389930) CAXA8463.rev CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY386557) CAXA6285.fwd CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY386556) CAXA6285.rev CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY383239) CAXA4493.fwd CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY383238) CAXA4493.rev CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY379781) CAXA1798.fwd CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY379780) CAXA1798.rev CAXA Helobdella robusta Subtracted L...    44   9.0    1
(EY375925) CAXA15895.fwd CAXA Helobdella robusta Subtracted ...    44   9.0    1
(EY375924) CAXA15895.rev CAXA Helobdella robusta Subtracted ...    44   9.0    1
(EY373885) CAXA14791.fwd CAXA Helobdella robusta Subtracted ...    44   9.0    1
(EY373884) CAXA14791.rev CAXA Helobdella robusta Subtracted ...    44   9.0    1
(EY368167) CAXA11656.fwd CAXA Helobdella robusta Subtracted ...    44   9.0    1
(EY368166) CAXA11656.rev CAXA Helobdella robusta Subtracted ...    44   9.0    1
(U64311) Lactococcus lactis phosphoribosylaminoimidazolesucc...    44   9.0    1
(CP000425) Lactococcus lactis subsp. cremoris SK11, complete...    44   9.0    1
(BA000028) Oceanobacillus iheyensis HTE831 DNA, complete gen...    44   9.0    1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    44   9.0    1
(AC161808) Mus musculus chromosome 5, clone RP24-386J15, com...    36   9.0    7

>(BJ391698) Dictyostelium discoideum cDNA clone:dds24i22, 5' end,
           single read.
          Length = 677

 Score = 1304 bits (658), Expect = 0.0
 Identities = 660/661 (99%)
 Strand = Plus / Plus


Query: 20  tttacactctttgctttttaattatcttaattaaccaaatacagaaatgacaataaccaa 79
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17  tttacactctttgctttttaattatcttaattaaccaaatacagaaatgacaataaccaa 76


Query: 80  ttatccatttgttactggttcaaaccttacatcaccatgcgatattcctcgtgtcgctct 139
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77  ttatccatttgttactggttcaaaccttacatcaccatgcgatattcctcgtgtcgctct 136


Query: 140 tcttgcttatacaaaccaaagtcttgcattaaatgctgctggaggtacaattgaaagcgc 199
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 137 tcttgcttatacaaaccaaagtcttgcattaaatgctgctggaggtacaattgaaagcgc 196


Query: 200 atcagatttattctcaatcactctttgcaaatattatttgaatagcgtcgtttctctctc 259
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 197 atcagatttattctcaatcactctttgcaaatattatttgaatagcgtcgtttctctctc 256


Query: 260 tccaaccaatgtatttggtggtgttgcacattattccagtttaacaacacttatgaataa 319
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 tccaaccaatgtatttggtggtgttgcacattattccagtttaacaacacttatgaataa 316


Query: 320 tcttgactctgccgctgataccattctcaatgcactctacgcatccatcaatacttgtgg 379
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 tcttgactctgccgctgataccattctcaatgcactctacgcatccatcaatacttgtgg 376


Query: 380 tactttcactgatttgactgcaacaaaattcgacacactctcaacagcctttagtggtta 439
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tactttcactgatttgactgcaacaaaattcgacacactctcaacagcctttagtggtta 436


Query: 440 tagaacaactattttatcactccaaactagttctaatactttaaaaacagcaatcactac 499
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 tagaacaactattttatcactccaaactagttctaatactttaaaaacagcaatcactac 496


Query: 500 aaccagagacagtttaacattgaccactgacatttataacactgtaaaaacatgttacac 559
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 497 aaccagagacagtttaacattgaccactgacatttataacactgtaaaaacatgttacac 556


Query: 560 aaatgttatcactgctttagaagggtttgagtgctcgtttgggtcaagttgcatctttac 619
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 aaatgttatcactgctttagaagggtttgagtgctcgtttgggtcaagttgcatctttac 616


Query: 620 ttaatactcataacgcaaatttcccaacatttaaggataatgttacctcttatactgatc 679
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 617 ttaatactcataacgcaaatttcccaacatttaangataatgttacctcttatactgatc 676


Query: 680 c 680
           |
Sbjct: 677 c 677

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 856,713,706
Number of extensions: 49628556
Number of successful extensions: 3558193
Number of sequences better than 10.0: 51
Length of query: 898
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 874
Effective length of database: 97,308,875,965
Effective search space: 85047957593410
Effective search space used: 85047957593410
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14530-1 (Contig-U14530-1Q) /CSM_Contig/Contig-U14530-1Q.Seq.d
         (898 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CP000152_440(CP000152|pid:none) Burkholderia sp. 383 chromosome ...    42   0.028
AX058620_1(AX058620|pid:none) Sequence 27 from Patent WO0075321....    42   0.036
(Q9HBW9) RecName: Full=EGF, latrophilin and seven transmembrane ...    41   0.062
AB032017_1(AB032017|pid:none) Homo sapiens mRNA for KPG_003 prot...    41   0.062
AF192403_1(AF192403|pid:none) Homo sapiens ETL protein (ETL) mRN...    41   0.062
AX365286_1(AX365286|pid:none) Sequence 1 from Patent WO0202602. ...    41   0.062
AX239635_1(AX239635|pid:none) Sequence 1 from Patent WO0164882.        41   0.062
CP000959_1837(CP000959|pid:none) Burkholderia cenocepacia MC0-3 ...    40   0.11
AM747721_2429(AM747721|pid:none) Burkholderia cenocepacia J2315 ...    40   0.11
CP000085_952(CP000085|pid:none) Burkholderia thailandensis E264 ...    37   0.90
CP000117_2211(CP000117|pid:none) Anabaena variabilis ATCC 29413,...    36   1.5
CP000461_36(CP000461|pid:none) Burkholderia cenocepacia HI2424 p...    36   1.5
AF354535_1(AF354535|pid:none) Giardia intestinalis variable surf...    35   3.4
FJ598166_1(FJ598166|pid:none) Cyanolyca turcosa voucher ANSP 504...    35   4.5
EF423808_1(EF423808|pid:none) Burkholderia pseudomallei autotran...    35   4.5
FJ598165_1(FJ598165|pid:none) Cyanolyca turcosa voucher ANSP 405...    35   4.5
FJ598161_1(FJ598161|pid:none) Cyanolyca turcosa voucher ANSP 512...    35   4.5
FJ173444_1(FJ173444|pid:none) Phylloscopus trivirgatus isolate P...    34   5.8
FJ173443_1(FJ173443|pid:none) Phylloscopus trivirgatus isolate P...    34   5.8
AM910996_47(AM910996|pid:none) Plasmodium knowlesi strain H chro...    34   7.6
FJ598176_1(FJ598176|pid:none) Cyanolyca pulchra voucher QCAZ 300...    34   7.6
FJ173456_1(FJ173456|pid:none) Phylloscopus trivirgatus isolate P...    34   7.6
EF529914_1(EF529914|pid:none) Saltator atricollis NADH dehydroge...    33   9.9
CP000011_618(CP000011|pid:none) Burkholderia mallei ATCC 23344 c...    33   9.9
EF052788_1(EF052788|pid:none) Pericrocotus divaricatus isolate L...    33   9.9
EF423807_1(EF423807|pid:none) Burkholderia pseudomallei autotran...    33   9.9
CP000573_1081(CP000573|pid:none) Burkholderia pseudomallei 1106a...    33   9.9
CP000545_796(CP000545|pid:none) Burkholderia mallei NCTC 10229 c...    33   9.9

>CP000152_440(CP000152|pid:none) Burkholderia sp. 383 chromosome 2,
            complete sequence.
          Length = 2866

 Score = 42.0 bits (97), Expect = 0.028
 Identities = 36/110 (32%), Positives = 58/110 (52%)
 Frame = +3

Query: 150  TNQSLALNAAGGTIESASDLFSITLCKYYLNSVVSLSPTNVFGGVAHYSSLTTLMNNLDS 329
            T+ S  L++A  +I S S   S  L     NS +S   T+   G+   SS  + + +L +
Sbjct: 2193 TSTSTGLSSANSSIGSLSTSTSTGLSS--ANSSISSLSTSTSTGL---SSANSSIGSLST 2247

Query: 330  AADTILNALYASINTCGTFTDLTATKFDTLSTAFSGYRTTILSLQTSSNT 479
            +  T L++  +SI++  T T   +T   +LST  S   +TILSL TS++T
Sbjct: 2248 STSTGLSSANSSISSLSTST---STGITSLSTGLSSTNSTILSLSTSTST 2294

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,447,310,550
Number of extensions: 28450713
Number of successful extensions: 49749
Number of sequences better than 10.0: 28
Number of HSP's gapped: 49706
Number of HSP's successfully gapped: 28
Length of query: 299
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 171
Effective length of database: 636,901,312
Effective search space: 108910124352
Effective search space used: 108910124352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.75  gvh: 0.60  alm: 0.42  top: 0.53  tms: 0.00  mit: 0.22  mip: 0.05
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 32.0 %: nuclear
	 12.0 %: mitochondrial
	  8.0 %: cytoskeletal
	  4.0 %: Golgi

>> prediction for Contig-U14530-1 is cyt
VS (DIR, S) 1
VH (FL, L) 1
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 1
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0