Contig-U14508-1 |
Contig ID |
Contig-U14508-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1337 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
3960402 |
End point |
3961739 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
2 |
Number of EST |
2 |
Link to clone list |
U14508 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.23 |
Homology vs DNA |
Query= Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d (1337 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ387487) Dictyostelium discoideum cDNA clone:dds2k22, 5' e... 609 0.0 2 (BJ409713) Dictyostelium discoideum cDNA clone:dds42b02, 3' ... 599 0.0 4 (AU052531) Dictyostelium discoideum slug cDNA, clone SLD478. 353 0.0 4 (AU061176) Dictyostelium discoideum slug cDNA, clone SLD478. 381 e-164 2 (AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.001 12 (EY377252) CAXA16617.rev CAXA Helobdella robusta Subtracted ... 42 0.005 2 (AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.013 13 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.017 10 (AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.021 12 (CR302276) mte1-20L3RM2 BAC end, cultivar Jemalong A17 of Me... 40 0.042 3 (AL034556) Plasmodium falciparum MAL3P5. 34 0.057 10 (AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.071 11 (AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.083 11 (AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.093 13 (AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.093 9 (AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 36 0.11 17 (CU855927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.16 6 (AC115584) Dictyostelium discoideum chromosome 2 map complem... 36 0.23 8 (CP000361) Arcobacter butzleri RM4018, complete genome. 36 0.26 20 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.28 10 (ER439321) 1092963807568 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.29 2 (EJ652600) 1092954006107 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.29 2 (AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 0.46 11 (CR932985) Zebrafish DNA sequence from clone DKEY-169L5 in l... 38 0.48 2 (BX072583) Zebrafish DNA sequence from clone CH211-185M2 in ... 48 0.65 4 (AL844509) Plasmodium falciparum chromosome 13. 40 0.66 12 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.70 9 (AC196813) Populus trichocarpa clone Pop1-114I2, complete se... 48 0.87 1 (AC181118) Strongylocentrotus purpuratus clone R3-3044B08, W... 48 0.87 1 (BH958059) odh55c03.g1 B.oleracea002 Brassica oleracea genom... 48 0.87 1 (AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.89 9 (AY675438) Maculinea arionides voucher UK99W804 cytochrome o... 42 0.90 3 (AY675409) Maculinea cyanecula voucher AD03B078 cytochrome o... 42 0.92 3 (AY675440) Maculinea teleius voucher UK99W809 cytochrome oxi... 42 0.92 3 (AY675448) Maculinea arion voucher ZD99S305 cytochrome oxida... 42 0.93 3 (AY675445) Maculinea arion voucher ZD99S297 cytochrome oxida... 42 0.93 3 (AY675444) Maculinea arionides voucher YJ02Q703 cytochrome o... 42 0.93 3 (AY675422) Maculinea arion voucher RV03N585 cytochrome oxida... 42 0.93 3 (AY675418) Maculinea teleius voucher MG02N009 cytochrome oxi... 42 0.93 3 (AY675408) Maculinea arionides voucher AD02A161 cytochrome o... 42 0.93 3 (AJ925587) Theileria annulata EST, clone tam006g08_q1k. 34 0.97 3 (AC232072) Solanum tuberosum strain Diploid genotype RH89-03... 38 1.00 9 (EK069575) 1092960173866 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.0 2 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 1.1 7 (AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 1.1 11 (AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 1.2 11 (AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 1.3 7 (EF533702) Glycine max clone BAC GM_WBb098N11, complete sequ... 40 1.3 6 (AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 1.3 10 (AE017308) Mycoplasma mobile 163K complete genome. 42 1.4 17 (CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 1.4 16 (CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 1.7 16 (CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 1.7 21 (AY810224) Schistosoma japonicum SJCHGC06114 protein mRNA, p... 32 1.7 4 (BX322565) Zebrafish DNA sequence from clone CH211-262K18 in... 34 1.7 7 (AC069394) Homo sapiens BAC clone RP11-731F1 from 2, complet... 36 1.7 2 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 1.8 7 (CU571318) Zebrafish DNA sequence from clone CH73-162J3 in l... 32 1.8 2 (AE001428) Plasmodium falciparum 3D7 chromosome 2 section 65... 32 2.0 2 (CV154182) Eucinetus5POLYT_A04_25_022 Eucinetus sp. cDNA Euc... 38 2.0 2 (AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 2.1 15 (AC208372) Populus trichocarpa clone JGIACSB249-D15, complet... 40 2.2 4 (CP000727) Clostridium botulinum A str. Hall, complete genome. 34 2.2 20 (AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 2.2 7 (FH408066) CHO_OF4300xh01f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 2.3 2 (BJ385199) Dictyostelium discoideum cDNA clone:ddc54m01, 3' ... 34 2.3 2 (BJ410215) Dictyostelium discoideum cDNA clone:ddv11m14, 5' ... 32 2.4 2 (CV153704) Eucinetus45PCR_B05_34_042 Eucinetus sp. cDNA Euci... 38 2.4 2 (CV154134) Eucinetus4POLYT_B05_34_042 Eucinetus sp. cDNA Euc... 38 2.4 2 (AC128864) Rattus norvegicus clone CH230-422P24, WORKING DRA... 36 2.6 10 (AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 2.7 7 (AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2.8 10 (EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 2.8 7 (AP008972) Finegoldia magna ATCC 29328 plasmid pFMC DNA, com... 36 3.0 9 (CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 3.0 20 (AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 34 3.1 12 (AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 3.2 13 (AY675415) Maculinea rebeli voucher MAT99Q829 cytochrome oxi... 40 3.2 3 (EF104617) Agrodiaetus admetus malievi voucher VL03F903 cyto... 40 3.3 3 (AY675443) Turanana cytis voucher VL03F545 cytochrome oxidas... 40 3.3 3 (AY675442) Otnjukovia tatjana voucher VL02L575 cytochrome ox... 40 3.3 3 (AY675435) Maculinea rebeli voucher TDA99Q995 cytochrome oxi... 40 3.3 3 (AY675426) Sinia divina voucher SY03H504 cytochrome oxidase ... 40 3.3 3 (AY675425) Phengaris daitozanus voucher SY03A503 cytochrome ... 40 3.3 3 (AY675424) Phengaris atroguttata voucher SY03A501 cytochrome... 40 3.3 3 (AY675421) Pseudophilotes vicrama voucher NK00P753 cytochrom... 40 3.3 3 (AY675417) Maculinea alcon voucher MG02N001 cytochrome oxida... 40 3.3 3 (AY675416) Pseudophilotes baton voucher MAT99Q829 cytochrome... 40 3.3 3 (AY675414) Iolana iolas voucher JC96Q003 cytochrome oxidase ... 40 3.3 3 (AY675411) Glaucopsyche lygdamus voucher AS92Z131 cytochrome... 40 3.3 3 (AY675405) Pseudophilotes bavius voucher AD00P155 cytochrome... 40 3.3 3 (AY496763) Agrodiaetus menalcas menalcas cytochrome oxidase ... 40 3.3 3 (AY675412) Euphilotes battoides voucher AS92Z166 cytochrome ... 40 3.3 3 (BV488872) S216P61384FA9.T0 Masuku Pan troglodytes troglodyt... 38 3.3 2 (AC147971) Gallus gallus BAC clone CH261-79K6 from chromosom... 46 3.4 1 (AF323480) Gorilla gorilla isolate GGO3B repeat region seque... 46 3.4 1 (AF323479) Gorilla gorilla isolate GGO3A repeat region seque... 46 3.4 1 (AC219113) Macaca mulatta BAC CH250-344O8 (Children's Hospi... 46 3.4 1 (AM470571) Vitis vinifera contig VV78X075007.8, whole genome... 46 3.4 1 (AJ617332) Debaryomyces robertsiae plasmid pWR1A ORF1, ORF2,... 46 3.4 1
>(BJ387487) Dictyostelium discoideum cDNA clone:dds2k22, 5' end, single read. Length = 652
Score = 609 bits (307), Expect(2) = 0.0 Identities = 307/307 (100%) Strand = Plus / Plus
Query: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405
Query: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465
Query: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525
Query: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585
Query: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645
Query: 646 ttacact 652 ||||||| Sbjct: 646 ttacact 652
Score = 539 bits (272), Expect(2) = 0.0 Identities = 272/272 (100%) Strand = Plus / Plus
Query: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60
Query: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120
Query: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180
Query: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240
Query: 241 tggatgaaaaattaaatggtatttctcattca 272 |||||||||||||||||||||||||||||||| Sbjct: 241 tggatgaaaaattaaatggtatttctcattca 272
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,571,221,150 Number of extensions: 105796417 Number of successful extensions: 11328448 Number of sequences better than 10.0: 207 Length of query: 1337 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1313 Effective length of database: 97,308,875,965 Effective search space: 127766554142045 Effective search space used: 127766554142045 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |