Contig-U14508-1
Contig ID Contig-U14508-1
Contig update 2002.12.18
Contig sequence
>Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d
AAATTCTTAAAAATGTAAATATAATTCATCAACCAAAAGTTTTCTCTGGT
AAAACAAAAAGGATCTTCTATGGAAATAATACCTTTTATATATTCCTACG
TTTATATCAAATTTTATATGAAAGATTACATAAAGCAAAAGAATTGGCTG
AGTCTGCTATGAAATCACATTGGACTTCAAAACCAAATGTTACTAGATTC
TTTTCTGCAAATTCAAATACTGATTCAAATAATGATTCAATGGATGAAAA
ATTAAATGGTATTTCTCATTCAAATAATAATAATAATAATAATAATACAA
ATAATACAACAGCAACAACAACTACAACAACTACAACAACAACAAATTCA
TCAGAATCAAGTAATAATAATAATTCAGAAAATTCAAATAATACAACAAC
AACTACACCAATTACTATTGAAGAATCTGAATTATCAGATGTTGAAAGAT
ATGATAGATTTATTTCAAGTCTTCAAGAATTTATGGATGGTGATAGTAAT
CAAGAGAAATATGAAGATAGTTGTAGATCTTATTTAGGTATTTCTTCATA
TATCTTGTTTACATTAGATAAATTAATTAATCAATTGGCAAGACAATTAC
AAGCATTATTACAGGGTGAGAATTGTTTACGTTTATTATATTTATTTACA
CTTGAAGTTAAATCTTATACTGGTTGGTCTGATGAACTTTATCATTCAAA
AGTTTTGGAGGTTTTAAAGGATGAAAGGGTTTTCTTATTCGAGTTTGAAG
CTACCTCTCAACCAATGGGTACATTCACCATCGAGCTAATGGATCCAACT
TCAGAATCAATGTTAAAGAAAGCTGAAGAGGTCATTGCTATCAGTGAAAG
AATGATTCAAGACTCTGAAGCTGAAATGGAAAAAGCTAAACAATACGTTG
CCGATTATAAACAATTGGATTCAAATATTGATCCAAGAACTCATAAAGTA
TTCCTAAAGAGAAATATCCCAAGGGTACTCTCTGAAATACCCACCGAGAA
TCAACAACAACAACAACAAAAACTTATGGATGAGGCTCTAAAGGATACAA
TCAATGAAACTGGCTTGGAATGTAGAATATGCACTCAAACCTACAGACTC
TTTTATGTAGAAGATACAACCGATTATTTCTATAGGAAAAATGCTATTTC
TAGATCCAAAAATTATAAATCTCCAAAATTAGATATTAATATTTTCCAAA
AAAAAGTAACTAAAAAAGATTTAGAAAAAGAATAATATTTTTTCTATTCT
TTTCATTTTTTTTCCAAATCCCTTGTTTAAATAATTATTCTAAAAAATAA
AAATAAAAAAAATAAAATAAAAAATAATAAAAAAATA

Gap no gap
Contig length 1337
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3960402
End point 3961739
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U14508
List of clone(s)

est1=SFA686F,1,652
est2=SLD478E,81,1338
Translated Amino Acid sequence
ILKNVNIIHQPKVFSGKTKRIFYGNNTFYIFLRLYQILYERLHKAKELAESAMKSHWTSK
PNVTRFFSANSNTDSNNDSMDEKLNGISHSNNNNNNNNTNNTTATTTTTTTTTTNSSESS
NNNNSENSNNTTTTTPITIEESELSDVERYDRFISSLQEFMDGDSNQEKYEDSCRSYLGI
SSYILFTLDKLINQLARQLQALLQGENCLRLLYLFTLEVKSYTGWSDELYHSKVLEVLKD
ERVFLFEFEATSQPMGTFTIELMDPTSESMLKKAEEVIAISERMIQDSEAEMEKAKQYVA
DYKQLDSNIDPRTHKVFLKRNIPRVLSEIPTENQQQQQQKLMDEALKDTINETGLECRIC
TQTYRLFYVEDTTDYFYRKNAISRSKNYKSPKLDINIFQKKVTKKDLEKE*yffysfhff
skslv*iiilknknkknkiknnkki


Translated Amino Acid sequence (All Frames)
Frame A:
kflkm*i*finqkfslvkqkgssmeiipfiysyvyikfymkdyikqknwlsll*nhiglq
nqmlldsflqiqiliqimiqwmkn*mvfliqiiiiiiiiqiiqqqqqlqqlqqqqihqnq
viiiiqkiqiiqqqlhqlllknlnyqmlkdmidlfqvfknlwmvivikrnmkivvdli*v
flhisclh*in*linwqdnykhyyrvrivyvyyiylhlklnlilvglmnfiiqkfwrf*r
mkgfsysslklplnqwvhspss*wiqlqnqc*rklkrsllsvke*fktlklkwkklnntl
piinnwiqiliqelikys*reisqgyslkypprinnnnnknlwmrl*riqsmklawnvey
alkptdsfm*kiqpiisigkmlfldpkiinlqn*ilifskkk*lkki*kknnifsilfif
fpnplfk*lf*kikikkik*kiikk


Frame B:
ns*kckynsstksflw*nkkdllwk*yllyiptfisnfi*kit*skrig*vcyeitldfk
tkcy*ilfckfky*fk**fng*kikwyfsfk*******yk*ynsnnnynnynnnkfirik
****frkfk*ynnnytnyy*ri*iirc*ki**iyfkssriygw***srei*r*l*ilfry
ffiylvyir*in*sigktitsiitg*elftfiifiyt*s*ilywlv**tlsfksfggfkg
*kgflirv*sylstngyihhrangsnfrinvkes*rghcyq*kndsrl*s*ngks*tirc
rl*tigfky*skns*sipkekypkgtl*nthrestttttktyg*gskgynq*nwlgm*nm
hsnlqtllcrrynrlfl*ekcyf*iqkl*iskiry*yfpkksn*krfrkriifflffsff
fqipclnnyskk*k*kk*nkk**kn


Frame C:
ILKNVNIIHQPKVFSGKTKRIFYGNNTFYIFLRLYQILYERLHKAKELAESAMKSHWTSK
PNVTRFFSANSNTDSNNDSMDEKLNGISHSNNNNNNNNTNNTTATTTTTTTTTTNSSESS
NNNNSENSNNTTTTTPITIEESELSDVERYDRFISSLQEFMDGDSNQEKYEDSCRSYLGI
SSYILFTLDKLINQLARQLQALLQGENCLRLLYLFTLEVKSYTGWSDELYHSKVLEVLKD
ERVFLFEFEATSQPMGTFTIELMDPTSESMLKKAEEVIAISERMIQDSEAEMEKAKQYVA
DYKQLDSNIDPRTHKVFLKRNIPRVLSEIPTENQQQQQQKLMDEALKDTINETGLECRIC
TQTYRLFYVEDTTDYFYRKNAISRSKNYKSPKLDINIFQKKVTKKDLEKE*yffysfhff
skslv*iiilknknkknkiknnkki


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14508-1 (Contig-U14508-1Q)
/CSM_Contig/Contig-U14508-1Q.Seq.d
(1337 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Conti... 1300 0.0
Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Conti... 44 4e-04
Contig-U11687-1 (Contig-U11687-1Q) /CSM_Contig/Conti... 42 0.002
Contig-U13716-1 (Contig-U13716-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U09312-1 (Contig-U09312-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U07040-1 (Contig-U07040-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U04608-1 (Contig-U04608-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U04519-1 (Contig-U04519-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U13671-1 (Contig-U13671-1Q) /CSM_Contig/Conti... 38 0.024
Contig-U12037-1 (Contig-U12037-1Q) /CSM_Contig/Conti... 38 0.024

>Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d
Length = 1337

Score = 1300 bits (656), Expect = 0.0
Identities = 656/656 (100%)
Strand = Plus / Plus


Query: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405


Query: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465


Query: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525


Query: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585


Query: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645


Query: 646 ttacacttgaagttaaatcttatactggttggtctgatgaactttatcattcaaaagttt 705
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 646 ttacacttgaagttaaatcttatactggttggtctgatgaactttatcattcaaaagttt 705


Query: 706 tggaggttttaaaggatgaaagggttttcttattcgagtttgaagctacctctcaaccaa 765
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 706 tggaggttttaaaggatgaaagggttttcttattcgagtttgaagctacctctcaaccaa 765


Query: 766 tgggtacattcaccatcgagctaatggatccaacttcagaatcaatgttaaagaaagctg 825
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 766 tgggtacattcaccatcgagctaatggatccaacttcagaatcaatgttaaagaaagctg 825


Query: 826 aagaggtcattgctatcagtgaaagaatgattcaagactctgaagctgaaatggaaaaag 885
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 826 aagaggtcattgctatcagtgaaagaatgattcaagactctgaagctgaaatggaaaaag 885


Query: 886 ctaaacaatacgttgccgattataaacaattggattcaaatattgatccaagaactcata 945
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 886 ctaaacaatacgttgccgattataaacaattggattcaaatattgatccaagaactcata 945


Query: 946 aagtattcctaaagagaaatatcccaagggtactctctgaaatacccaccgagaat 1001
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 946 aagtattcctaaagagaaatatcccaagggtactctctgaaatacccaccgagaat 1001


Score = 539 bits (272), Expect = e-153
Identities = 272/272 (100%)
Strand = Plus / Plus


Query: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60


Query: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120


Query: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180


Query: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240


Query: 241 tggatgaaaaattaaatggtatttctcattca 272
||||||||||||||||||||||||||||||||
Sbjct: 241 tggatgaaaaattaaatggtatttctcattca 272


Score = 383 bits (193), Expect = e-106
Identities = 209/217 (96%)
Strand = Plus / Plus


Query: 1020 aaacttatggatgaggctctaaaggatacaatcaatgaaactggcttggaatgtagaata 1079
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 aaacttatggatgaggctctaaaggatacaatcaatgaaactggcttggaatgtagaata 1079


Query: 1080 tgcactcaaacctacagactcttttatgtagaagatacaaccgattatttctataggaaa 1139
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1080 tgcactcaaacctacagactcttttatgtagaagatacaaccgattatttctataggaaa 1139


Query: 1140 aatgctatttctagatccaaaaattataaatctccaaaattagatattaatattttccnn 1199
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1140 aatgctatttctagatccaaaaattataaatctccaaaattagatattaatattttccaa 1199


Query: 1200 nnnnnngtaactaaaaaagatttagaaaaagaataat 1236
|||||||||||||||||||||||||||||||
Sbjct: 1200 aaaaaagtaactaaaaaagatttagaaaaagaataat 1236


Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 1264 ccaaatcccttgtttaaataattattct 1291
||||||||||||||||||||||||||||
Sbjct: 1264 ccaaatcccttgtttaaataattattct 1291


Score = 30.2 bits (15), Expect = 5.8
Identities = 39/47 (82%)
Strand = Plus / Plus


Query: 357 tcaagtaataataataattcagaaaattcaaataatacaacaacaac 403
|||| ||||||||||||| | ||| |||||||||||||| ||||
Sbjct: 270 tcaaataataataataataataataatacaaataatacaacagcaac 316


>Contig-U13845-1 (Contig-U13845-1Q) /CSM_Contig/Contig-U13845-1Q.Seq.d
Length = 1358

Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus


Query: 362 taataataataattcagaaaat 383
||||||||||||||||||||||
Sbjct: 803 taataataataattcagaaaat 824


Score = 34.2 bits (17), Expect = 0.37
Identities = 20/21 (95%)
Strand = Plus / Plus


Query: 386 aaataatacaacaacaactac 406
|||||||| ||||||||||||
Sbjct: 764 aaataataaaacaacaactac 784


>Contig-U11687-1 (Contig-U11687-1Q) /CSM_Contig/Contig-U11687-1Q.Seq.d
Length = 1508

Score = 42.1 bits (21), Expect = 0.002
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 357 tcaagtaataataataattca 377
|||||||||||||||||||||
Sbjct: 171 tcaagtaataataataattca 191


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,351
Number of Sequences: 6905
Number of extensions: 37351
Number of successful extensions: 10019
Number of sequences better than 10.0: 708
length of query: 1337
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1321
effective length of database: 5,564,391
effective search space: 7350560511
effective search space used: 7350560511
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.23
Homology vs DNA
Query= Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d
(1337 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ387487) Dictyostelium discoideum cDNA clone:dds2k22, 5' e... 609 0.0 2
(BJ409713) Dictyostelium discoideum cDNA clone:dds42b02, 3' ... 599 0.0 4
(AU052531) Dictyostelium discoideum slug cDNA, clone SLD478. 353 0.0 4
(AU061176) Dictyostelium discoideum slug cDNA, clone SLD478. 381 e-164 2
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047... 34 0.001 12
(EY377252) CAXA16617.rev CAXA Helobdella robusta Subtracted ... 42 0.005 2
(AL929357) Plasmodium falciparum strain 3D7, chromosome 9; s... 36 0.013 13
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 34 0.017 10
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 34 0.021 12
(CR302276) mte1-20L3RM2 BAC end, cultivar Jemalong A17 of Me... 40 0.042 3
(AL034556) Plasmodium falciparum MAL3P5. 34 0.057 10
(AC004709) Plasmodium falciparum chromosome 12, *** SEQUENCI... 36 0.071 11
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 38 0.083 11
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470... 38 0.093 13
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098... 34 0.093 9
(AE016826) Buchnera aphidicola str. Bp (Baizongia pistaciae)... 36 0.11 17
(CU855927) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 0.16 6
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 36 0.23 8
(CP000361) Arcobacter butzleri RM4018, complete genome. 36 0.26 20
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 32 0.28 10
(ER439321) 1092963807568 Global-Ocean-Sampling_GS-35-01-01-1... 46 0.29 2
(EJ652600) 1092954006107 Global-Ocean-Sampling_GS-30-02-01-1... 46 0.29 2
(AE014817) Plasmodium falciparum 3D7 chromosome 14 section 2... 36 0.46 11
(CR932985) Zebrafish DNA sequence from clone DKEY-169L5 in l... 38 0.48 2
(BX072583) Zebrafish DNA sequence from clone CH211-185M2 in ... 48 0.65 4
(AL844509) Plasmodium falciparum chromosome 13. 40 0.66 12
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.70 9
(AC196813) Populus trichocarpa clone Pop1-114I2, complete se... 48 0.87 1
(AC181118) Strongylocentrotus purpuratus clone R3-3044B08, W... 48 0.87 1
(BH958059) odh55c03.g1 B.oleracea002 Brassica oleracea genom... 48 0.87 1
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 36 0.89 9
(AY675438) Maculinea arionides voucher UK99W804 cytochrome o... 42 0.90 3
(AY675409) Maculinea cyanecula voucher AD03B078 cytochrome o... 42 0.92 3
(AY675440) Maculinea teleius voucher UK99W809 cytochrome oxi... 42 0.92 3
(AY675448) Maculinea arion voucher ZD99S305 cytochrome oxida... 42 0.93 3
(AY675445) Maculinea arion voucher ZD99S297 cytochrome oxida... 42 0.93 3
(AY675444) Maculinea arionides voucher YJ02Q703 cytochrome o... 42 0.93 3
(AY675422) Maculinea arion voucher RV03N585 cytochrome oxida... 42 0.93 3
(AY675418) Maculinea teleius voucher MG02N009 cytochrome oxi... 42 0.93 3
(AY675408) Maculinea arionides voucher AD02A161 cytochrome o... 42 0.93 3
(AJ925587) Theileria annulata EST, clone tam006g08_q1k. 34 0.97 3
(AC232072) Solanum tuberosum strain Diploid genotype RH89-03... 38 1.00 9
(EK069575) 1092960173866 Global-Ocean-Sampling_GS-31-01-01-1... 44 1.0 2
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 40 1.1 7
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1... 34 1.1 11
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s... 40 1.2 11
(AC115581) Dictyostelium discoideum chromosome 2 map complem... 34 1.3 7
(EF533702) Glycine max clone BAC GM_WBb098N11, complete sequ... 40 1.3 6
(AC006280) Plasmodium falciparum chromosome 12 clone 3D7, **... 34 1.3 10
(AE017308) Mycoplasma mobile 163K complete genome. 42 1.4 17
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 38 1.4 16
(CR548612) Paramecium tetraurelia macronuclear largest chrom... 34 1.7 16
(CP001078) Clostridium botulinum E3 str. Alaska E43, complet... 34 1.7 21
(AY810224) Schistosoma japonicum SJCHGC06114 protein mRNA, p... 32 1.7 4
(BX322565) Zebrafish DNA sequence from clone CH211-262K18 in... 34 1.7 7
(AC069394) Homo sapiens BAC clone RP11-731F1 from 2, complet... 36 1.7 2
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 36 1.8 7
(CU571318) Zebrafish DNA sequence from clone CH73-162J3 in l... 32 1.8 2
(AE001428) Plasmodium falciparum 3D7 chromosome 2 section 65... 32 2.0 2
(CV154182) Eucinetus5POLYT_A04_25_022 Eucinetus sp. cDNA Euc... 38 2.0 2
(AF250284) Amsacta moorei entomopoxvirus, complete genome. 32 2.1 15
(AC208372) Populus trichocarpa clone JGIACSB249-D15, complet... 40 2.2 4
(CP000727) Clostridium botulinum A str. Hall, complete genome. 34 2.2 20
(AC115684) Dictyostelium discoideum chromosome 2 map 3108975... 34 2.2 7
(FH408066) CHO_OF4300xh01f1.ab1 CHO_OF4 Nicotiana tabacum ge... 34 2.3 2
(BJ385199) Dictyostelium discoideum cDNA clone:ddc54m01, 3' ... 34 2.3 2
(BJ410215) Dictyostelium discoideum cDNA clone:ddv11m14, 5' ... 32 2.4 2
(CV153704) Eucinetus45PCR_B05_34_042 Eucinetus sp. cDNA Euci... 38 2.4 2
(CV154134) Eucinetus4POLYT_B05_34_042 Eucinetus sp. cDNA Euc... 38 2.4 2
(AC128864) Rattus norvegicus clone CH230-422P24, WORKING DRA... 36 2.6 10
(AJ011856) Saccharomyces cerevisiae complete mitochondrial g... 36 2.7 7
(AE014847) Plasmodium falciparum 3D7 chromosome 12, section ... 36 2.8 10
(EU004203) Saccharomyces cerevisiae YJM789 mitochondrion, co... 36 2.8 7
(AP008972) Finegoldia magna ATCC 29328 plasmid pFMC DNA, com... 36 3.0 9
(CP000726) Clostridium botulinum A str. ATCC 19397, complete... 34 3.0 20
(AE014839) Plasmodium falciparum 3D7 chromosome 11 section 4... 34 3.1 12
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1... 34 3.2 13
(AY675415) Maculinea rebeli voucher MAT99Q829 cytochrome oxi... 40 3.2 3
(EF104617) Agrodiaetus admetus malievi voucher VL03F903 cyto... 40 3.3 3
(AY675443) Turanana cytis voucher VL03F545 cytochrome oxidas... 40 3.3 3
(AY675442) Otnjukovia tatjana voucher VL02L575 cytochrome ox... 40 3.3 3
(AY675435) Maculinea rebeli voucher TDA99Q995 cytochrome oxi... 40 3.3 3
(AY675426) Sinia divina voucher SY03H504 cytochrome oxidase ... 40 3.3 3
(AY675425) Phengaris daitozanus voucher SY03A503 cytochrome ... 40 3.3 3
(AY675424) Phengaris atroguttata voucher SY03A501 cytochrome... 40 3.3 3
(AY675421) Pseudophilotes vicrama voucher NK00P753 cytochrom... 40 3.3 3
(AY675417) Maculinea alcon voucher MG02N001 cytochrome oxida... 40 3.3 3
(AY675416) Pseudophilotes baton voucher MAT99Q829 cytochrome... 40 3.3 3
(AY675414) Iolana iolas voucher JC96Q003 cytochrome oxidase ... 40 3.3 3
(AY675411) Glaucopsyche lygdamus voucher AS92Z131 cytochrome... 40 3.3 3
(AY675405) Pseudophilotes bavius voucher AD00P155 cytochrome... 40 3.3 3
(AY496763) Agrodiaetus menalcas menalcas cytochrome oxidase ... 40 3.3 3
(AY675412) Euphilotes battoides voucher AS92Z166 cytochrome ... 40 3.3 3
(BV488872) S216P61384FA9.T0 Masuku Pan troglodytes troglodyt... 38 3.3 2
(AC147971) Gallus gallus BAC clone CH261-79K6 from chromosom... 46 3.4 1
(AF323480) Gorilla gorilla isolate GGO3B repeat region seque... 46 3.4 1
(AF323479) Gorilla gorilla isolate GGO3A repeat region seque... 46 3.4 1
(AC219113) Macaca mulatta BAC CH250-344O8 (Children's Hospi... 46 3.4 1
(AM470571) Vitis vinifera contig VV78X075007.8, whole genome... 46 3.4 1
(AJ617332) Debaryomyces robertsiae plasmid pWR1A ORF1, ORF2,... 46 3.4 1

>(BJ387487) Dictyostelium discoideum cDNA clone:dds2k22, 5' end,
single read.
Length = 652

Score = 609 bits (307), Expect(2) = 0.0
Identities = 307/307 (100%)
Strand = Plus / Plus


Query: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 346 attcatcagaatcaagtaataataataattcagaaaattcaaataatacaacaacaacta 405


Query: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 406 caccaattactattgaagaatctgaattatcagatgttgaaagatatgatagatttattt 465


Query: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 466 caagtcttcaagaatttatggatggtgatagtaatcaagagaaatatgaagatagttgta 525


Query: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 gatcttatttaggtatttcttcatatatcttgtttacattagataaattaattaatcaat 585


Query: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 tggcaagacaattacaagcattattacagggtgagaattgtttacgtttattatatttat 645


Query: 646 ttacact 652
|||||||
Sbjct: 646 ttacact 652

Score = 539 bits (272), Expect(2) = 0.0
Identities = 272/272 (100%)
Strand = Plus / Plus


Query: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aaattcttaaaaatgtaaatataattcatcaaccaaaagttttctctggtaaaacaaaaa 60


Query: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ggatcttctatggaaataataccttttatatattcctacgtttatatcaaattttatatg 120


Query: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaagattacataaagcaaaagaattggctgagtctgctatgaaatcacattggacttcaa 180


Query: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aaccaaatgttactagattcttttctgcaaattcaaatactgattcaaataatgattcaa 240


Query: 241 tggatgaaaaattaaatggtatttctcattca 272
||||||||||||||||||||||||||||||||
Sbjct: 241 tggatgaaaaattaaatggtatttctcattca 272

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,571,221,150
Number of extensions: 105796417
Number of successful extensions: 11328448
Number of sequences better than 10.0: 207
Length of query: 1337
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1313
Effective length of database: 97,308,875,965
Effective search space: 127766554142045
Effective search space used: 127766554142045
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14508-1 (Contig-U14508-1Q) /CSM_Contig/Contig-U14508-1Q.Seq.d
(1337 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC137832_25(AC137832|pid:none) Medicago truncatula clone mth2-22... 92 4e-17
AC146588_15(AC146588|pid:none) Medicago truncatula clone mth2-14... 84 9e-15
AP008207_63(AP008207|pid:none) Oryza sativa (japonica cultivar-g... 82 6e-14
BC139856_1(BC139856|pid:none) Danio rerio zgc:162128, mRNA (cDNA... 82 6e-14
AP002845_26(AP002845|pid:none) Oryza sativa Japonica Group genom... 82 6e-14
AC186751_17(AC186751|pid:none) Musa acuminata clone MA4_54N07, c... 81 7e-14
AC010676_5(AC010676|pid:none) Arabidopsis thaliana chromosome II... 80 1e-13
BC018973_1(BC018973|pid:none) Homo sapiens SIN3 homolog A, trans... 80 2e-13
AK074903_1(AK074903|pid:none) Homo sapiens cDNA FLJ90422 fis, cl... 80 2e-13
AF418569_1(AF418569|pid:none) Homo sapiens MSIN3A mRNA, complete... 80 2e-13
L38621_1(L38621|pid:none) Mus musculus clone pVZmSin3A9 Sin3A9 (... 80 2e-13
AK074800_1(AK074800|pid:none) Homo sapiens cDNA FLJ90319 fis, cl... 80 2e-13
L38620_1(L38620|pid:none) Mus musculus clone pVZmSin3A Sin3A (Si... 80 2e-13
U22394_1(U22394|pid:none) Mus musculus mSin3A (sin3A) mRNA, comp... 80 2e-13
BC170554_1(BC170554|pid:none) Xenopus laevis cDNA clone MGC:1972... 77 1e-12
AF154112_1(AF154112|pid:none) Xenopus laevis transcription co-re... 76 2e-12
L36831_1(L36831|pid:none) Mus musculus transcriptional regulator... 74 1e-11
A96623(A96623) hypothetical protein F23H11.20 [imported] - Arabi... 74 2e-11
(Q60520) RecName: Full=Paired amphipathic helix protein Sin3a; A... 73 2e-11
CP001574_243(CP001574|pid:none) Micromonas sp. RCC299 chromosome... 72 5e-11
(O48686) RecName: Full=Paired amphipathic helix protein Sin3; Al... 67 2e-09
AC007067_5(AC007067|pid:none) Genomic sequence for Arabidopsis t... 66 2e-09
BC171496_1(BC171496|pid:none) Danio rerio SIN3 homolog B, transc... 64 9e-09
BC129063_1(BC129063|pid:none) Xenopus laevis hypothetical protei... 64 9e-09
AK136972_1(AK136972|pid:none) Mus musculus 12 days embryo embryo... 63 2e-08
AL391146_14(AL391146|pid:none) Arabidopsis thaliana DNA chromoso... 63 3e-08
BC121315_1(BC121315|pid:none) Xenopus tropicalis SIN3 homolog B,... 63 3e-08
BC005113_1(BC005113|pid:none) Homo sapiens SIN3 homolog B, trans... 62 4e-08
AB014600_1(AB014600|pid:none) Homo sapiens mRNA for KIAA0700 pro... 62 4e-08
AX877157_1(AX877157|pid:none) Sequence 12062 from Patent EP10746... 62 4e-08
(O75182) RecName: Full=Paired amphipathic helix protein Sin3b; A... 62 4e-08
AC186755_31(AC186755|pid:none) Musa balbisiana clone MBP_91N22, ... 62 4e-08
AB463259_1(AB463259|pid:none) Synthetic construct DNA, clone: pF... 62 4e-08
AK295618_1(AK295618|pid:none) Homo sapiens cDNA FLJ59305 complet... 62 4e-08
CR954201_390(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 62 6e-08
AC002062_21(AC002062|pid:none) Sequence of BAC F20P5 from Arabid... 62 6e-08
(Q62141) RecName: Full=Paired amphipathic helix protein Sin3b; A... 61 8e-08
AM920427_312(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 55 6e-06
AE017343_598(AE017343|pid:none) Cryptococcus neoformans var. neo... 51 1e-04
AE013599_1594(AE013599|pid:none) Drosophila melanogaster chromos... 47 0.002
AJ007518_1(AJ007518|pid:none) Drosophila melanogaster mRNA for t... 47 0.002
AY052128_1(AY052128|pid:none) Drosophila melanogaster SD07795 fu... 47 0.002
AF024603_1(AF024603|pid:none) Drosophila melanogaster transcript... 47 0.002
AF024604_1(AF024604|pid:none) Drosophila melanogaster transcript... 47 0.002
BC129859_1(BC129859|pid:none) Mus musculus transcriptional regul... 46 0.003
FN392321_248(FN392321|pid:none) Pichia pastoris GS115 chromosome... 45 0.006
AC005489_13(AC005489|pid:none) Genomic sequence for Arabidopsis ... 45 0.008
AP008211_2104(AP008211|pid:none) Oryza sativa (japonica cultivar... 43 0.023
(O13919) RecName: Full=Paired amphipathic helix protein pst2; Al... 42 0.039
CR382123_264(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 42 0.066
CP000095_193(CP000095|pid:none) Prochlorococcus marinus str. NAT... 41 0.086
CP000500_220(CP000500|pid:none) Pichia stipitis CBS 6054 chromos... 41 0.11
CR382138_429(CR382138|pid:none) Debaryomyces hansenii strain CBS... 41 0.11
CU928175_308(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 39 0.33
CP001160_475(CP001160|pid:none) Thalassiosira pseudonana CCMP133... 39 0.33
CU633901_13(CU633901|pid:none) Podospora anserina genomic DNA ch... 38 0.73
CP000673_379(CP000673|pid:none) Clostridium kluyveri DSM 555, co... 36 2.8
AP009049_361(AP009049|pid:none) Clostridium kluyveri NBRC 12016 ... 36 2.8
(Q09750) RecName: Full=Paired amphipathic helix protein pst1; Al... 36 3.6
BC134819_1(BC134819|pid:none) Xenopus laevis hypothetical protei... 36 3.6
CP001078_2884(CP001078|pid:none) Clostridium botulinum E3 str. A... 35 6.1
M36822_1(M36822|pid:none) S.cerevisiae paired amphipathic helix ... 35 8.0
AC116979_92(AC116979|pid:none) Dictyostelium discoideum chromoso... 35 8.0

>AC137832_25(AC137832|pid:none) Medicago truncatula clone mth2-22i17,
complete sequence.
Length = 1358

Score = 92.0 bits (227), Expect = 4e-17
Identities = 70/251 (27%), Positives = 117/251 (46%), Gaps = 3/251 (1%)
Frame = +3

Query: 429 ELSDVERYDRFISSLQEFMDGDSNQEKYEDSCRSYLGISSYILFTLDKLINXXXXXXXXX 608
+ S + Y RF+ +L +DG + K+ED CR+ LG SY+LFTLDKLI
Sbjct: 1109 DASSTDLYARFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTV 1168

Query: 609 XXGENCLRLLYLFTLEVKSYTG-WSDELYHSKVLEVLKDERVFLFEFEATSQPMGTFTIE 785
E +LL L+ E G +D +YHS +L +E ++ F+ ++S + +I+
Sbjct: 1169 ATDEEDAKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENIYRFQCSSSSSRL---SIQ 1225

Query: 786 LMDPTSESMLKKAEEVIAISERMIQDSEAEMEKAKQYVADYKQLDSNIDPRTHKVFLKRN 965
LMD +E E+ A++ D + +++ L +P H + L+RN
Sbjct: 1226 LMDNMNEK-----PEIAAVA----VDPDFSFYLHNDFLS---VLPGKKEP--HGILLERN 1271

Query: 966 IPRV--LSEIPTENXXXXXXKLMDEALKDTINETGLECRICTQTYRLFYVEDTTDYFYRK 1139
P+ L E+ + ++D GLEC+I + ++ YV DT D+F+R
Sbjct: 1272 KPKYGDLDEL----------SAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRP 1321

Query: 1140 NAISRSKNYKS 1172
R+ + S
Sbjct: 1322 RRKRRTSSTTS 1332

Score = 47.0 bits (110), Expect = 0.002
Identities = 22/44 (50%), Positives = 31/44 (70%)
Frame = +3

Query: 51 KTKRIFYGNNTFYIFLRLYQILYERLHKAKELAESAMKSHWTSK 182
K R+FYGN+ F++ RL+QILYER+ AKE + SA + W +K
Sbjct: 1066 KDSRVFYGNDDFFVLFRLHQILYERILSAKENSTSA-EIKWKTK 1108

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,522,123,420
Number of extensions: 25185512
Number of successful extensions: 68385
Number of sequences better than 10.0: 63
Number of HSP's gapped: 68309
Number of HSP's successfully gapped: 93
Length of query: 445
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 313
Effective length of database: 623,955,076
Effective search space: 195297938788
Effective search space used: 195297938788
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.67 gvh: 0.22 alm: 0.44 top: 0.53 tms: 0.00 mit: 0.35 mip: 0.07
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
24.0 %: cytoplasmic
16.0 %: mitochondrial
12.0 %: cytoskeletal
4.0 %: plasma membrane
4.0 %: extracellular, including cell wall

>> prediction for Contig-U14508-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 1
CH (FL, L) 0
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0