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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14494-1
Contig ID Contig-U14494-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14494-1 (Contig-U14494-1Q) /CSM_Contig/Contig-U14494-1Q.Seq.d
AGCTAACCAATCACACAATGAAGTACCTCTCTTTGCAACTACAAGTGAAT
TCAAAATCTACCCAGCTCGTGGTATGAAATTCGTTAGAGGTGACTCTAAA
GTTTTCCACTTTATCAACACTAAAGTTGAATCTCTCTTCTTCAGAAAAGA
TCAACCCAAGAGATATTAGATGGTCAATGGTTTACCGTAGAATCTACAAA
AACACCACCACTGATGTTTCAGCCAAAAAGAAGGCCAGAAAGACCAAGAA
AGTCGAAAGAAACATCGTCGGTGCTTCATTAGAAGTCATCCAACAAAAAC
GTGCCCAAAAACCAGAAGTCAAACAAGCTGCTGCCGAACAAGCCAAAAGA
GAAATCAAAGAAAAGAAGAAAGCTGCTGCCAAAAAAAGCTGCCCCAAAAA
AATAAATGATTAAATAAACGTTGGATCATTTATTGTTTTAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
A
Gap no gap
Contig length 501
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3103900
End point 3104371
Strand (PLUS/MINUS) PLUS
Number of clones 16
Number of EST 23
Link to clone list U14494
List of clone(s) 

est1=VFL381F,1,449
est2=VFL381Z,1,431
est3=VSE158E,1,439
est4=VSG477F,1,449
est5=VSI713Z,1,406
est6=VSI860F,2,436
est7=VSI860Z,2,431
est8=VSJ109F,2,449
est9=VSJ109Z,2,431
est10=VSF626F,8,449
est11=VSF371E,12,421
est12=VSI713F,12,461
est13=VSG792F,14,449
est14=VSB728E,18,439
est15=VSI434F,27,449
est16=VSI434Z,27,421
est17=VSB468E,31,440
est18=VSB647E,39,456
est19=VSD467F,108,445
est20=VSD467Z,108,433
est21=VSA467E,284,502
est22=CHS436F,325,447
est23=CHS436Z,325,429
Translated Amino Acid sequence 
ltnhtmkylslqlqvnskstqlvv*NSLEVTLKFSTLSTLKLNLSSSEKINPRDIRWSMV
YRRIYKNTTTDVSAKKKARKTKKVERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKE
KKKAAAKKSCPKKIND*invgsfivlkkkkkkkkkkkkkkkkkkkk
Translated Amino Acid sequence (All Frames) 
Frame A:
s*pitq*stslcnyk*iqnlpsswyeir*r*l*sfplyqh*s*isllqkrstqeildgqw
ftvestktpplmfqpkrrperprksketssvlh*kssnknvpknqksnkllpnkpkeksk
krrkllpkkaapkk*mik*tldhllf*kkkkkkkkkkkkkkkkkkkk


Frame B:
anqshnevplfattsefkiypargmkfvrgdskvfhfintkveslffrkdqpkry*mvng
lp*nlqkhhh*cfsqkegqkdqesrkkhrrcfirshptktcpktrsqtsccrtsqkrnqr
keesccqkklpqknk*lnkrwiiycfkkkkkkkkkkkkkkkkkkkk


Frame C:
ltnhtmkylslqlqvnskstqlvv*NSLEVTLKFSTLSTLKLNLSSSEKINPRDIRWSMV
YRRIYKNTTTDVSAKKKARKTKKVERNIVGASLEVIQQKRAQKPEVKQAAAEQAKREIKE
KKKAAAKKSCPKKIND*invgsfivlkkkkkkkkkkkkkkkkkkkk
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14494-1 (Contig-U14494-1Q)
/CSM_Contig/Contig-U14494-1Q.Seq.d
         (501 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14494-1 (Contig-U14494-1Q) /CSM_Contig/Conti...   704  0.0
Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U10768-1 (Contig-U10768-1Q) /CSM_Contig/Conti...    32  0.54
Contig-U14716-1 (Contig-U14716-1Q) /CSM_Contig/Conti...    30  2.1
Contig-U13498-1 (Contig-U13498-1Q) /CSM_Contig/Conti...    30  2.1
Contig-U12835-1 (Contig-U12835-1Q) /CSM_Contig/Conti...    30  2.1
Contig-U12694-1 (Contig-U12694-1Q) /CSM_Contig/Conti...    30  2.1
Contig-U12506-1 (Contig-U12506-1Q) /CSM_Contig/Conti...    30  2.1
Contig-U10219-1 (Contig-U10219-1Q) /CSM_Contig/Conti...    30  2.1

>Contig-U14494-1 (Contig-U14494-1Q) /CSM_Contig/Contig-U14494-1Q.Seq.d
          Length = 501

 Score =  704 bits (355), Expect = 0.0
 Identities = 355/355 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctaaccaatcacacaatgaagtacctctctttgcaactacaagtgaattcaaaatcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agctaaccaatcacacaatgaagtacctctctttgcaactacaagtgaattcaaaatcta 60

                                                                       
Query: 61  cccagctcgtggtatgaaattcgttagaggtgactctaaagttttccactttatcaacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  cccagctcgtggtatgaaattcgttagaggtgactctaaagttttccactttatcaacac 120

                                                                       
Query: 121 taaagttgaatctctcttcttcagaaaagatcaacccaagagatattagatggtcaatgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 taaagttgaatctctcttcttcagaaaagatcaacccaagagatattagatggtcaatgg 180

                                                                       
Query: 181 tttaccgtagaatctacaaaaacaccaccactgatgtttcagccaaaaagaaggccagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tttaccgtagaatctacaaaaacaccaccactgatgtttcagccaaaaagaaggccagaa 240

                                                                       
Query: 241 agaccaagaaagtcgaaagaaacatcgtcggtgcttcattagaagtcatccaacaaaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 agaccaagaaagtcgaaagaaacatcgtcggtgcttcattagaagtcatccaacaaaaac 300

                                                                  
Query: 301 gtgcccaaaaaccagaagtcaaacaagctgctgccgaacaagccaaaagagaaat 355
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gtgcccaaaaaccagaagtcaaacaagctgctgccgaacaagccaaaagagaaat 355


 Score = 65.9 bits (33), Expect = 4e-11
 Identities = 33/33 (100%)
 Strand = Plus / Plus

                                            
Query: 407 tgattaaataaacgttggatcatttattgtttt 439
           |||||||||||||||||||||||||||||||||
Sbjct: 407 tgattaaataaacgttggatcatttattgtttt 439


>Contig-U11154-1 (Contig-U11154-1Q) /CSM_Contig/Contig-U11154-1Q.Seq.d
          Length = 4168

 Score = 32.2 bits (16), Expect = 0.54
 Identities = 16/16 (100%)
 Strand = Plus / Minus

                           
Query: 196 acaaaaacaccaccac 211
           ||||||||||||||||
Sbjct: 447 acaaaaacaccaccac 432


>Contig-U10768-1 (Contig-U10768-1Q) /CSM_Contig/Contig-U10768-1Q.Seq.d
          Length = 1513

 Score = 32.2 bits (16), Expect = 0.54
 Identities = 16/16 (100%)
 Strand = Plus / Plus

                           
Query: 188 tagaatctacaaaaac 203
           ||||||||||||||||
Sbjct: 961 tagaatctacaaaaac 976


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2626
Number of Sequences: 6905
Number of extensions: 2626
Number of successful extensions: 187
Number of sequences better than 10.0: 46
length of query: 501
length of database: 5,674,871
effective HSP length: 16
effective length of query: 485
effective length of database: 5,564,391
effective search space: 2698729635
effective search space used: 2698729635
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.23
Homology vs DNA 
Query= Contig-U14494-1 (Contig-U14494-1Q) /CSM_Contig/Contig-U14494-1Q.Seq.d
         (501 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AU269352) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-166  3
(AU269417) Dictyostelium discoideum vegetative cDNA clone:VS...   339   e-163  3
(AU266547) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-160  4
(BJ415788) Dictyostelium discoideum cDNA clone:ddv23b21, 5' ...   347   e-160  4
(AU262912) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-160  4
(BJ434049) Dictyostelium discoideum cDNA clone:ddv23b21, 3' ...   347   e-160  4
(AU269353) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-160  4
(AU269416) Dictyostelium discoideum vegetative cDNA clone:VS...   339   e-157  4
(AU269122) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-156  4
(AU265521) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-156  4
(AU266818) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-152  3
(AU262205) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-152  3
(AU265129) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-152  3
(AU268689) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-151  3
(AU268690) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-151  3
(AU262158) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-147  2
(AU262031) Dictyostelium discoideum vegetative cDNA clone:VS...   339   e-144  2
(AU269123) Dictyostelium discoideum vegetative cDNA clone:VS...   323   e-136  3
(AU264082) Dictyostelium discoideum vegetative cDNA clone:VS...   416   e-112  1
(AU264081) Dictyostelium discoideum vegetative cDNA clone:VS...   347   e-109  2
(AU265128) Dictyostelium discoideum vegetative cDNA clone:VS...   206   e-101  3
(FE850719) CAFP1330.rev CAFP Pichia stipitis aerobic xylose ...    46   0.026  2
(FE851174) CAFP1578.rev CAFP Pichia stipitis aerobic xylose ...    46   0.026  2
(FE851468) CAFP1731.rev CAFP Pichia stipitis aerobic xylose ...    46   0.026  2
(FE861106) CAFY984.fwd CAFY Pichia stipitis oxygen limited x...    46   0.026  2
(FE845676) CAFI1097.rev CAFI Pichia stipitis aerobic dextros...    46   0.026  2
(FE852428) CAFP2239.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.026  2
(FE856324) CAFU569.rev CAFU Pichia stipitis oxygen limited d...    46   0.027  2
(FE845515) CAFI1007.rev CAFI Pichia stipitis aerobic dextros...    46   0.027  2
(FE856004) CAFU403.rev CAFU Pichia stipitis oxygen limited d...    46   0.027  2
(FE852427) CAFP2239.rev CAFP Pichia stipitis aerobic xylose ...    46   0.027  2
(FE851175) CAFP1578.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.027  2
(FE845619) CAFI1066.rev CAFI Pichia stipitis aerobic dextros...    46   0.027  2
(FE851656) CAFP1833.rev CAFP Pichia stipitis aerobic xylose ...    46   0.027  2
(FE850720) CAFP1330.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.027  2
(FE860662) CAFY750.rev CAFY Pichia stipitis oxygen limited x...    46   0.027  2
(FE851469) CAFP1731.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.027  2
(FE845677) CAFI1097.fwd CAFI Pichia stipitis aerobic dextros...    46   0.027  2
(FE856325) CAFU569.fwd CAFU Pichia stipitis oxygen limited d...    46   0.027  2
(FE845516) CAFI1007.fwd CAFI Pichia stipitis aerobic dextros...    46   0.027  2
(FE856005) CAFU403.fwd CAFU Pichia stipitis oxygen limited d...    46   0.027  2
(FE860663) CAFY750.fwd CAFY Pichia stipitis oxygen limited x...    46   0.028  2
(FE845620) CAFI1066.fwd CAFI Pichia stipitis aerobic dextros...    46   0.028  2
(FE852211) CAFP2125.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.029  2
(FE852245) CAFP2143.fwd CAFP Pichia stipitis aerobic xylose ...    46   0.030  2
(FE846409) CAFI720.rev CAFI Pichia stipitis aerobic dextrose...    46   0.032  2
(FE846410) CAFI720.fwd CAFI Pichia stipitis aerobic dextrose...    46   0.033  2
(CP000497) Pichia stipitis CBS 6054 chromosome 3, complete s...    46   1.2    1
(AC174089) Strongylocentrotus purpuratus clone R3-17H1, WORK...    46   1.2    1
(CU633451) M.truncatula DNA sequence from clone MTE1-13M3 on...    44   4.7    1
(BZ875618) CH240_250L14.TJ CHORI-240 Bos taurus genomic clon...    44   4.7    1
(DT167148) JGI_ANNO40156.rev ANNO Pimephales promelas Whole ...    44   4.7    1
(DN545972) 1395081 MARC 7BOV Bos taurus cDNA 5', mRNA sequence.    44   4.7    1
(DN544572) 1393545 MARC 7BOV Bos taurus cDNA 3', mRNA sequence.    44   4.7    1

>(AU269352) Dictyostelium discoideum vegetative cDNA clone:VSI860,
           5' end single read.
          Length = 431

 Score =  347 bits (175), Expect(3) = e-166
 Identities = 175/175 (100%)
 Strand = Plus / Plus


Query: 146 aaagatcaacccaagagatattagatggtcaatggtttaccgtagaatctacaaaaacac 205
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 143 aaagatcaacccaagagatattagatggtcaatggtttaccgtagaatctacaaaaacac 202


Query: 206 caccactgatgtttcagccaaaaagaaggccagaaagaccaagaaagtcgaaagaaacat 265
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 caccactgatgtttcagccaaaaagaaggccagaaagaccaagaaagtcgaaagaaacat 262


Query: 266 cgtcggtgcttcattagaagtcatccaacaaaaacgtgcccaaaaaccagaagtc 320
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 cgtcggtgcttcattagaagtcatccaacaaaaacgtgcccaaaaaccagaagtc 317

 Score =  206 bits (104), Expect(3) = e-166
 Identities = 104/104 (100%)
 Strand = Plus / Plus


Query: 44  agtgaattcaaaatctacccagctcgtggtatgaaattcgttagaggtgactctaaagtt 103
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 42  agtgaattcaaaatctacccagctcgtggtatgaaattcgttagaggtgactctaaagtt 101


Query: 104 ttccactttatcaacactaaagttgaatctctcttcttcagaaa 147
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 ttccactttatcaacactaaagttgaatctctcttcttcagaaa 145

 Score = 83.8 bits (42), Expect(3) = e-166
 Identities = 42/42 (100%)
 Strand = Plus / Plus


Query: 2  gctaaccaatcacacaatgaagtacctctctttgcaactaca 43
          ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gctaaccaatcacacaatgaagtacctctctttgcaactaca 42

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 383,147,237
Number of extensions: 20431924
Number of successful extensions: 1462971
Number of sequences better than 10.0: 54
Length of query: 501
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 478
Effective length of database: 93,106,754,628
Effective search space: 44505028712184
Effective search space used: 44505028712184
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14494-1 (Contig-U14494-1Q) /CSM_Contig/Contig-U14494-1Q.Seq.d
         (501 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54VN6) RecName: Full=60S ribosomal protein L24;                      81   3e-31
AE017347_304(AE017347|pid:none) Cryptococcus neoformans var. neo...    50   2e-11
(Q6C4U6) RecName: Full=60S ribosomal protein L24;  &CR382131_968...    49   3e-11
(Q6BNC2) RecName: Full=60S ribosomal protein L24;  &CR382137_107...    48   9e-11
(P38666) RecName: Full=60S ribosomal protein L24-2; AltName: Ful...    44   2e-07
(Q42347) RecName: Full=60S ribosomal protein L24-1;  &AC006282_2...    44   4e-07
(Q7Z0T8) RecName: Full=60S ribosomal protein L24;  &AY307168_1(A...    38   4e-07
DQ268857_1(DQ268857|pid:none) Solanum tuberosum clone 174B08 rib...    44   5e-07
EF147810_1(EF147810|pid:none) Populus trichocarpa clone WS0125_C...    43   5e-07
FN357294_3(FN357294|pid:none) Schistosoma mansoni genome sequenc...    39   8e-07
CP001329_237(CP001329|pid:none) Micromonas sp. RCC299 chromosome...    38   1e-06
EU965866_1(EU965866|pid:none) Zea mays clone 289536 60S ribosoma...    40   2e-06
AC093952_9(AC093952|pid:none) Oryza sativa (japonica cultivar-gr...    40   2e-06
EU968239_1(EU968239|pid:none) Zea mays clone 317293 60S ribosoma...    40   2e-06
BT035955_1(BT035955|pid:none) Zea mays full-length cDNA clone ZM...    40   2e-06
EU960558_1(EU960558|pid:none) Zea mays clone 226126 60S ribosoma...    40   2e-06
EF678129_1(EF678129|pid:none) Picea sitchensis clone WS02823_C13...    41   3e-06
EF144457_1(EF144457|pid:none) Populus trichocarpa clone PX0019_J...    41   5e-06
(Q8JGR4) RecName: Full=60S ribosomal protein L24;  &AY099532_1(A...    52   6e-06
AP008213_541(AP008213|pid:none) Oryza sativa (japonica cultivar-...    40   6e-06
AP003740_10(AP003740|pid:none) Oryza sativa Japonica Group genom...    40   7e-06
AK028209_1(AK028209|pid:none) Mus musculus 11 days embryo whole ...    45   7e-06
BC059530_1(BC059530|pid:none) Danio rerio ribosomal protein L24,...    52   8e-06
EU284818_1(EU284818|pid:none) TSA: Elaeis guineensis EgEfMPOB000...    41   8e-06
AY857438_1(AY857438|pid:none) Suberites domuncula L24 mRNA, comp...    40   8e-06
AB374963_1(AB374963|pid:none) Solea senegalensis RPL24 mRNA for ...    52   1e-05
DQ213898_1(DQ213898|pid:none) Taeniopygia guttata clone 0061P001...    52   1e-05
FM992691_431(FM992691|pid:none) Candida dubliniensis CD36 chromo...    52   1e-05
BT081740_1(BT081740|pid:none) Rana catesbeiana clone rcat-evr-52...    52   1e-05
BT046460_1(BT046460|pid:none) Salmo salar clone ssal-evd-569-295...    41   1e-05
FJ208971_1(FJ208971|pid:none) Gillichthys seta 60S ribosomal pro...    51   1e-05
(Q9DFQ7) RecName: Full=60S ribosomal protein L24;                      51   1e-05
(Q6Y263) RecName: Full=60S ribosomal protein L24;  &AY190673_1(A...    51   1e-05
BC078474_1(BC078474|pid:none) Xenopus laevis MGC85232 protein, m...    51   1e-05
BC158409_1(BC158409|pid:none) Xenopus tropicalis hypothetical pr...    51   1e-05
EF123136_1(EF123136|pid:none) Saccharomyces cerevisiae strain BY...    51   1e-05
FN392320_87(FN392320|pid:none) Pichia pastoris GS115 chromosome ...    51   2e-05
(P38665) RecName: Full=60S ribosomal protein L24; AltName: Full=...    51   2e-05
AB099003_1(AB099003|pid:none) Bos taurus mRNA for similar to rib...    50   2e-05
AX887970_1(AX887970|pid:none) Sequence 3833 from Patent EP1033401.     50   2e-05
AY891881_1(AY891881|pid:none) Synthetic construct Homo sapiens c...    50   2e-05
AP007166_115(AP007166|pid:none) Aspergillus oryzae RIB40 genomic...    50   4e-05
CU928180_394(CU928180|pid:none) Kluyveromyces thermotolerans str...    50   4e-05
CU633899_19(CU633899|pid:none) Podospora anserina genomic DNA ch...    49   5e-05
(Q90YU3) RecName: Full=60S ribosomal protein L24;  &AF401579_1(A...    49   7e-05
BT047382_1(BT047382|pid:none) Salmo salar clone ssal-evf-540-285...    49   7e-05
AL158815_1(AL158815|pid:none) Human DNA sequence from clone RP1-...    49   7e-05
CP000497_512(CP000497|pid:none) Pichia stipitis CBS 6054 chromos...    49   9e-05
AB098812_1(AB098812|pid:none) Bos taurus mRNA for similar to rib...    48   1e-04
AK077617_1(AK077617|pid:none) Mus musculus 8 days embryo whole b...    47   3e-04
AC139525_4(AC139525|pid:none) Medicago truncatula clone mth2-26o...    45   0.001
BT051254_1(BT051254|pid:none) Medicago truncatula clone MTYF1_F2...    45   0.001
BT053534_1(BT053534|pid:none) Medicago truncatula clone MTYFP_FQ...    45   0.001
AY909411_1(AY909411|pid:none) Siniperca chuatsi clone C274 60S r...    45   0.001
BT053413_1(BT053413|pid:none) Medicago truncatula clone MTYFP_FQ...    37   0.001
CR940352_49(CR940352|pid:none) Theileria annulata strain Ankara ...    44   0.002
DQ440209_1(DQ440209|pid:none) Aedes aegypti clone AET-2065 ribos...    44   0.002
AM494972_120(AM494972|pid:none) Leishmania braziliensis chromoso...    44   0.002
AY826149_1(AY826149|pid:none) Aedes albopictus clone AL_305 ribo...    44   0.002
AM502254_156(AM502254|pid:none) Leishmania infantum chromosome 36.     44   0.002
AF011787_1(AF011787|pid:none) Trypanosoma brucei ribosomal prote...    44   0.002
EF633834_1(EF633834|pid:none) Ornithodoros parkeri clone OP-105 ...    44   0.002
AY292613_1(AY292613|pid:none) Oikopleura dioica 60S ribosomal pr...    37   0.002
DQ886877_1(DQ886877|pid:none) Argas monolakensis ribosomal prote...    44   0.003
FJ444822_1(FJ444822|pid:none) Ochlerotatus taeniorhynchus clone ...    44   0.003
DQ910348_1(DQ910348|pid:none) Anopheles funestus clone AF-389 ri...    44   0.003
DQ286047_1(DQ286047|pid:none) Hydra vulgaris ribosomal protein L...    44   0.003
BT065543_1(BT065543|pid:none) Zea mays full-length cDNA clone ZM...    38   0.003
EU247167_1(EU247167|pid:none) Lycosa singoriensis clone LSsin832...    43   0.004
BT070482_1(BT070482|pid:none) Picea sitchensis clone WS02731_F16...    35   0.004
(Q9VGN9) RecName: Full=Probable ribosome biogenesis protein RLP2...    41   0.005
AK153492_1(AK153492|pid:none) Mus musculus bone marrow macrophag...    39   0.007
(Q99L28) RecName: Full=Probable ribosome biogenesis protein RLP2...    39   0.007
BC159094_1(BC159094|pid:none) Xenopus tropicalis hypothetical pr...    39   0.007
(Q3SZ12) RecName: Full=Probable ribosome biogenesis protein RLP2...    39   0.007
BT081828_1(BT081828|pid:none) Rana catesbeiana clone rcat-evr-52...    39   0.007
BC005344_1(BC005344|pid:none) Homo sapiens chromosome 15 open re...    39   0.007
(Q9FUL4) RecName: Full=60S ribosomal protein L24;  &AF298827_1(A...    42   0.008
AK341284_1(AK341284|pid:none) Acyrthosiphon pisum ACYPI000090 mR...    42   0.008
AM049075_1(AM049075|pid:none) Agriotes lineatus mRNA for ribosom...    42   0.011
DQ443302_1(DQ443302|pid:none) Bombyx mori ribosomal protein L24 ...    40   0.011
AY857439_1(AY857439|pid:none) Suberites domuncula L24-like mRNA,...    37   0.012
(Q5RF04) RecName: Full=Probable ribosome biogenesis protein RLP2...    38   0.015
AK073670_1(AK073670|pid:none) Oryza sativa Japonica Group cDNA c...    37   0.015
CP000582_231(CP000582|pid:none) Ostreococcus lucimarinus CCE9901...    36   0.019
BT079016_1(BT079016|pid:none) Esox lucius clone eluc-evq-534-020...    39   0.020
EU116861_1(EU116861|pid:none) Sipunculus nudus putative ribosoma...    40   0.023
BT084548_1(BT084548|pid:none) Zea mays full-length cDNA clone ZM...    40   0.023
(Q10353) RecName: Full=Ribosome biogenesis protein rlp24;  &CU32...    38   0.025
CR954202_33(CR954202|pid:none) Ostreococcus tauri strain OTTH059...    36   0.025
(Q7ZTZ2) RecName: Full=Probable ribosome biogenesis protein RLP2...    39   0.033
BC073497_1(BC073497|pid:none) Xenopus laevis MGC81028 protein, m...    37   0.033
BC008499_1(BC008499|pid:none) Homo sapiens ribosomal L24 domain ...    37   0.033
FN322258_1(FN322258|pid:none) Schistosoma japonicum isolate Anhu...    40   0.040
FN322248_1(FN322248|pid:none) Schistosoma japonicum isolate Anhu...    40   0.040
FN322259_1(FN322259|pid:none) Schistosoma japonicum isolate Anhu...    40   0.040
AY814371_1(AY814371|pid:none) Schistosoma japonicum clone SJCHGC...    40   0.040
CP000594_365(CP000594|pid:none) Ostreococcus lucimarinus CCE9901...    30   0.046
(Q17606) RecName: Full=Probable ribosome biogenesis protein RLP2...    39   0.052
EF070457_1(EF070457|pid:none) Maconellicoccus hirsutus clone WHM...    39   0.052
(Q962T5) RecName: Full=60S ribosomal protein L24;  &AF400189_1(A...    39   0.068
AY496460_1(AY496460|pid:none) Marsupenaeus japonicus ribosomal p...    39   0.068
AM910992_271(AM910992|pid:none) Plasmodium knowlesi strain H chr...    34   0.069
(Q6CF69) RecName: Full=Ribosome biogenesis protein RLP24;  &CR38...    36   0.069
AE017343_303(AE017343|pid:none) Cryptococcus neoformans var. neo...    34   0.089
BT081946_1(BT081946|pid:none) Rana catesbeiana clone rcat-evr-52...    39   0.089
FN392320_896(FN392320|pid:none) Pichia pastoris GS115 chromosome...    37   0.12
AY829771_1(AY829771|pid:none) Lonomia obliqua ribosomal protein ...    38   0.12
EU339126_1(EU339126|pid:none) Loxostege sticticalis ribosomal pr...    38   0.12
AL844504_60(AL844504|pid:none) Plasmodium falciparum 3D7 chromos...    33   0.15
AM849526_1(AM849526|pid:none) Pomphorhynchus laevis partial mRNA...    37   0.20
FM992691_50(FM992691|pid:none) Candida dubliniensis CD36 chromos...    34   0.25
(Q8SSF6) RecName: Full=Probable ribosome biogenesis protein RLP2...    34   0.26
(Q6BH34) RecName: Full=Ribosome biogenesis protein RLP24;  &CR38...    34   0.32
BT046243_1(BT046243|pid:none) Salmo salar clone ssal-evf-551-143...    33   0.33
CU928173_466(CU928173|pid:none) Zygosaccharomyces rouxii strain ...    35   0.41
(Q759D1) RecName: Full=Ribosome biogenesis protein RLP24;  &AE01...    35   0.41
(Q6CNW3) RecName: Full=Ribosome biogenesis protein RLP24;  &CR38...    33   0.41
BT083293_1(BT083293|pid:none) Anoplopoma fimbria clone afim-evh-...    35   0.42
DQ401085_1(DQ401085|pid:none) Chlamydomonas sp. ICE-L 60S riboso...    36   0.58
EU558323_1(EU558323|pid:none) Novocrania anomala putative 60S ri...    36   0.58
(Q6FPU0) RecName: Full=Ribosome biogenesis protein RLP24;  &CR38...    34   0.69
CU928166_100(CU928166|pid:none) Kluyveromyces thermotolerans str...    33   0.69
BT079426_1(BT079426|pid:none) Esox lucius clone eluc-evq-532-170...    33   0.71
BT073536_1(BT073536|pid:none) Oncorhynchus mykiss clone omyk-evn...    33   0.91
BT048953_1(BT048953|pid:none) Salmo salar clone ssal-evf-519-225...    33   0.91
BT048399_1(BT048399|pid:none) Salmo salar clone ssal-evf-578-018...    33   0.91
BT074187_1(BT074187|pid:none) Oncorhynchus mykiss clone omyk-evo...    33   0.91
AM920433_537(AM920433|pid:none) Penicillium chrysogenum Wisconsi...    35   0.99
AB099064_1(AB099064|pid:none) Bos taurus mRNA for similar to rib...    35   1.3
AM502229_90(AM502229|pid:none) Leishmania infantum chromosome 11.      35   1.3
AM494948_70(AM494948|pid:none) Leishmania braziliensis chromosom...    34   1.7
CU633897_314(CU633897|pid:none) Podospora anserina genomic DNA c...    31   1.9
BT075114_1(BT075114|pid:none) Osmerus mordax clone omor-eva-514-...    32   2.0
(O01868) RecName: Full=60S ribosomal protein L24;  &AF003151_13(...    33   2.9
BT073337_1(BT073337|pid:none) Oncorhynchus mykiss clone omyk-evn...    31   4.2
AY961485_1(AY961485|pid:none) Lysiphlebus testaceipes ribosomal ...    32   6.4
BT076085_1(BT076085|pid:none) Caligus rogercresseyi clone crog-e...    32   6.4
CP001398_1875(CP001398|pid:none) Thermococcus gammatolerans EJ3,...    32   8.3
CP000613_873(CP000613|pid:none) Rhodospirillum centenum SW, comp...    32   8.3

>(Q54VN6) RecName: Full=60S ribosomal protein L24;
          Length = 127

 Score = 80.9 bits (198), Expect(2) = 3e-31
 Identities = 41/51 (80%), Positives = 41/51 (80%)
 Frame = +3

Query: 150 INPRDIRWSMVYRRIYKNTTTDVSXXXXXXXXXXVERNIVGASLEVIQQKR 302
           INPRDIRWSMVYRRIYKNTTTDVS          VERNIVGASLEVIQQKR
Sbjct: 44  INPRDIRWSMVYRRIYKNTTTDVSAKKKARKTKKVERNIVGASLEVIQQKR 94

 Score = 77.0 bits (188), Expect(2) = 3e-31
 Identities = 36/39 (92%), Positives = 37/39 (94%)
 Frame = +2

Query: 44  SEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKDQPK 160
           SEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRK  P+
Sbjct: 9   SEFKIYPARGMKFVRGDSKVFHFINTKVESLFFRKINPR 47

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 561,911,049
Number of extensions: 8499916
Number of successful extensions: 20689
Number of sequences better than 10.0: 140
Number of HSP's gapped: 20644
Number of HSP's successfully gapped: 235
Length of query: 167
Length of database: 1,051,180,864
Length adjustment: 119
Effective length of query: 48
Effective length of database: 666,030,343
Effective search space: 31969456464
Effective search space used: 31969456464
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.80  gvh: 0.52  alm: 0.50  top: 0.53  tms: 0.00  mit: 0.33  mip: 0.00
 nuc: 0.19  erl: 0.00  erm: 0.40  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 24.0 %: cytoplasmic
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: peroxisomal
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14494-1 is nuc
VS (DIR, S) 14
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0