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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14477-1
Contig ID Contig-U14477-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Contig-U14477-1Q.Seq.d
AATAACAATAACAACAATAATAATAATAATACTACAACAACTACAACTAC
ATCAGACAGGTATTAATAATACAGCGACATTAGGATCAACATTATCTATA
GCTTCAAATAATTCATCAAACTATTCATCATCATCAACTTCATCATCATT
TTTTTCAGCGGCATCATCATTTATTAGTAATGGTAGTAATATGAATTTAT
TATCATCAAGTACTAGTGGTTATGGTGGTAGTAATAGTTTTTTATCTGCA
AGTAATTTACAATTTAAGAATAATAGTAATATTAATGGTACAGTTAATAG
TAATAGTTTTTTAAATGGGGCTAGTAATGGTAACAGTAATAATAATAGTA
ATAGTAATAATAATTTAACGAATCAACAACAACAACAGCAACAACAACAA
CAACAGCAACAACAACAAAATCAAAATGATATTTTAGTATCAAATAATAA
ACCGTTTAAACAATTATTTTTAAAGTCATTATCAAAAATTTATAATAATC
CAGAGATTAGATTTTTGGGATTATCAGAGATTGGAAAGATAATAACATCA
TTTATACCAACGATTGGTAAATCAGGTAGTAATAGTTCAGTGATTTCATT
GGATATCTCTGGCAATGGTATTGGCGATTATGGNNNNNNNNN
Gap no gap
Contig length 642
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 910817
End point 910995
Strand (PLUS/MINUS) PLUS
Number of clones 1
Number of EST 1
Link to clone list U14477
List of clone(s) 

est1=CHR571F,1,633
Translated Amino Acid sequence 
ITITTIIIIILQQLQLHQTGINNTATLGSTLSIASNNSSNYSSSSTSSSFFSAASSFISN
GSNMNLLSSSTSGYGGSNSFLSASNLQFKNNSNINGTVNSNSFLNGASNGNSNNNSNSNN
NLTNQQQQQQQQQQQQQQQNQNDILVSNNKPFKQLFLKSLSKIYNNPEIRFLGLSEIGKI
ITSFIPTIGKSGSNSSVISLDISGNGIGDYGXX
Translated Amino Acid sequence (All Frames) 
Frame A:
nnnnnnnnnntttttttsdry**ysdiriniiysfk*fiklfiiinfiiiffsgiiiy**
w**yefiiiky*wlww***ffick*fti*e***y*wys****ffkwg**w*q********
*fnesttttatttttatttksk*yfsik**tv*tiifkviiknl**srd*ifgiirdwkd
nniiytndw*ir***fsdfigylwqwywrlwxxx


Frame B:
ITITTIIIIILQQLQLHQTGINNTATLGSTLSIASNNSSNYSSSSTSSSFFSAASSFISN
GSNMNLLSSSTSGYGGSNSFLSASNLQFKNNSNINGTVNSNSFLNGASNGNSNNNSNSNN
NLTNQQQQQQQQQQQQQQQNQNDILVSNNKPFKQLFLKSLSKIYNNPEIRFLGLSEIGKI
ITSFIPTIGKSGSNSSVISLDISGNGIGDYGXX


Frame C:
*q*qq****yynnynyirqvliiqrh*dqhyl*lqiihqtihhhqlhhhffqrhhhllvm
vvi*iyyhqvlvvmvvvivfylqviynlriivilmvqlivivf*mglvmvtviiivivii
i*rinnnnsnnnnnsnnnkikmif*yqiinrlnnyf*shyqkfiiiqrldfwdyqrler*
*hhlyqrlvnqvvivq*fhwislamvlaimxxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14477-1 (Contig-U14477-1Q)
/CSM_Contig/Contig-U14477-1Q.Seq.d
         (642 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Conti...   494  e-140
Contig-U06217-1 (Contig-U06217-1Q) /CSM_Contig/Conti...   317  8e-87
Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Conti...    50  3e-06
Contig-U14476-1 (Contig-U14476-1Q) /CSM_Contig/Conti...    44  2e-04
Contig-U12470-1 (Contig-U12470-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U12338-1 (Contig-U12338-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11873-1 (Contig-U11873-1Q) /CSM_Contig/Conti...    42  7e-04
Contig-U11472-1 (Contig-U11472-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U10804-1 (Contig-U10804-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U09782-1 (Contig-U09782-1Q) /CSM_Contig/Conti...    40  0.003

>Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Contig-U14477-1Q.Seq.d
          Length = 642

 Score =  494 bits (249), Expect = e-140
 Identities = 263/270 (97%)
 Strand = Plus / Plus

                                                                       
Query: 52  tcagacaggtattaataatacagcgacattaggatcaacattatctatagcttcaaataa 111
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 52  tcagacaggtattaataatacagcgacattaggatcaacattatctatagcttcaaataa 111

                                                                       
Query: 112 ttcatcaaactattcatcatcatcaacttcatcatcannnnnnncagcggcatcatcatt 171
           |||||||||||||||||||||||||||||||||||||       ||||||||||||||||
Sbjct: 112 ttcatcaaactattcatcatcatcaacttcatcatcatttttttcagcggcatcatcatt 171

                                                                       
Query: 172 tattagtaatggtagtaatatgaatttattatcatcaagtactagtggttatggtggtag 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 tattagtaatggtagtaatatgaatttattatcatcaagtactagtggttatggtggtag 231

                                                                       
Query: 232 taatagttttttatctgcaagtaatttacaatttaagaataatagtaatattaatggtac 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 taatagttttttatctgcaagtaatttacaatttaagaataatagtaatattaatggtac 291

                                         
Query: 292 agttaatagtaatagttttttaaatggggc 321
           ||||||||||||||||||||||||||||||
Sbjct: 292 agttaatagtaatagttttttaaatggggc 321


 Score =  426 bits (215), Expect = e-119
 Identities = 215/215 (100%)
 Strand = Plus / Plus

                                                                       
Query: 419 aatcaaaatgatattttagtatcaaataataaaccgtttaaacaattatttttaaagtca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatcaaaatgatattttagtatcaaataataaaccgtttaaacaattatttttaaagtca 478

                                                                       
Query: 479 ttatcaaaaatttataataatccagagattagatttttgggattatcagagattggaaag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttatcaaaaatttataataatccagagattagatttttgggattatcagagattggaaag 538

                                                                       
Query: 539 ataataacatcatttataccaacgattggtaaatcaggtagtaatagttcagtgatttca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataataacatcatttataccaacgattggtaaatcaggtagtaatagttcagtgatttca 598

                                              
Query: 599 ttggatatctctggcaatggtattggcgattatgg 633
           |||||||||||||||||||||||||||||||||||
Sbjct: 599 ttggatatctctggcaatggtattggcgattatgg 633


>Contig-U06217-1 (Contig-U06217-1Q) /CSM_Contig/Contig-U06217-1Q.Seq.d
          Length = 470

 Score =  317 bits (160), Expect = 8e-87
 Identities = 190/201 (94%), Gaps = 1/201 (0%)
 Strand = Plus / Plus

                                                                       
Query: 122 tattcatcatcatcaacttcatcatcannnnnnncagcggcatcatcatttattagtaat 181
           ||||||||||||||| |||||||||||       ||||||||||||||||||||||||||
Sbjct: 3   tattcatcatcatcatcttcatcatcatttttttcagcggcatcatcatttattagtaat 62

                                                                       
Query: 182 ggtagtaatatgaatttattatcatcaagtactagtggttatggtggtagtaatagtttt 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63  ggtagtaatatgaatttattatcatcaagtactagtggttatggtggtagtaatagtttt 122

                                                                       
Query: 242 ttatct-gcaagtaatttacaatttaagaataatagtaatattaatggtacagttaatag 300
           |||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct: 123 ttatctcgcaagtaatttacaatttaaggatcatagtaatattaatggtacagttaatag 182

                                
Query: 301 taatagttttttaaatggggc 321
           |||||||||||||||||||||
Sbjct: 183 taatagttttttaaatggggc 203


>Contig-U14197-1 (Contig-U14197-1Q) /CSM_Contig/Contig-U14197-1Q.Seq.d
          Length = 1162

 Score = 50.1 bits (25), Expect = 3e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                    
Query: 124 ttcatcatcatcaacttcatcatca 148
           |||||||||||||||||||||||||
Sbjct: 139 ttcatcatcatcaacttcatcatca 163


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,414
Number of Sequences: 6905
Number of extensions: 14414
Number of successful extensions: 2573
Number of sequences better than 10.0: 400
length of query: 642
length of database: 5,674,871
effective HSP length: 16
effective length of query: 626
effective length of database: 5,564,391
effective search space: 3483308766
effective search space used: 3483308766
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.23
Homology vs DNA 
Query= Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Contig-U14477-1Q.Seq.d
         (642 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ371358) Dictyostelium discoideum cDNA clone:ddc57m17, 5' ...   422   e-177  3
(AU261325) Dictyostelium discoideum vegetative cDNA clone:VS...   149   4e-47  2
(CR848038) Chlamydophila abortus strain S26/3, complete genome.    52   0.025  1
(AC115592) Dictyostelium discoideum chromosome 2 map 1-12595...    40   0.18   5
(EU292755) Theileria sp. sheep/China1 Tl337 mRNA, partial se...    36   0.28   2
(EU292756) Theileria sp. sheep/China1 Tl102 mRNA, partial se...    36   0.28   2
(AL390918) Human DNA sequence from clone RP11-569E4 on chrom...    48   0.39   1
(AL356746) Human DNA sequence *** SEQUENCING CANCELLED *** f...    48   0.39   1
(AC011080) Homo sapiens clone RP11-45K2, WORKING DRAFT SEQUE...    48   0.39   1
(EI795735) CHORI518024G12TR BAC library from the breast cell...    48   0.39   1
(FF091857) CPAD-aac22b06.b1 PB2801_EST_CPAD1 Caenorhabditis ...    48   0.39   1
(AY863213) Smittium culisetae mitochondrion, complete genome.      34   0.51   5
(AA508924) MBAFCW1C06T3 Brugia malayi adult female cDNA (SAW...    32   0.53   3
(EL927369) NY4Tr1_9_B02.b1_A039 NY4 trophonts (NY4Tr1) Ichth...    36   0.58   2
(AC005504) Plasmodium falciparum chromosome 12, *** SEQUENCI...    38   0.64   4
(EJ453693) 1093015481946 Global-Ocean-Sampling_GS-28-01-01-1...    36   1.1    2
(CR457449) Zebrafish DNA sequence from clone DKEY-104I15 in ...    46   1.5    1
(AC216687) Populus trichocarpa clone POP097-P17, complete se...    46   1.5    1
(EA740051) Sequence 11497 from patent US 7368527.                  46   1.5    1
(AC114258) Dictyostelium discoideum chromosome 2 map complem...    46   1.5    1
(AC108063) Homo sapiens BAC clone RP11-452J21 from 4, comple...    46   1.5    1
(AC218432) Bos taurus clone CH240-283I10, WORKING DRAFT SEQU...    46   1.5    1
(DX984508) CHORI103-2M7.TV CHORI103 Schistosoma mansoni geno...    46   1.5    1
(DE940405) Macropus eugenii DNA, BAC clone: MEB1-134J19_F, 5...    46   1.5    1
(DB258388) Homo sapiens cDNA clone UTERU2014927, 5' end, mRN...    46   1.5    1
(CN298010) 17000600016668 GRN_PREHEP Homo sapiens cDNA 5', m...    46   1.5    1
(CP000575) Staphylothermus marinus F1, complete genome.            46   1.5    1
(AE015925) Chlamydophila caviae GPIC, complete genome.             46   1.5    1
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    38   1.6    4
(AC118233) Mus musculus clone RP23-462L17, WORKING DRAFT SEQ...    36   2.5    4
(BX005152) Zebrafish DNA sequence from clone CH211-168G2 in ...    40   3.0    3
(AC213411) Populus trichocarpa clone POP011-D12, complete se...    32   3.0    2
(AC007623) Homo sapiens 12 BAC RP11-608E13 (Roswell Park Can...    34   3.1    2
(AC209040) Populus trichocarpa clone POP050-H13, complete se...    32   3.1    2
(AE001368) Plasmodium falciparum 3D7 chromosome 2 section 5 ...    36   3.5    3
(EJ745199) 1092962053379 Global-Ocean-Sampling_GS-30-02-01-1...    36   3.7    2
(CR407600) Zebrafish DNA sequence from clone DKEY-159B16 in ...    38   3.8    2
(DU486138) 1098421095366 CHORI-243 Ovis aries genomic clone ...    32   4.1    2
(AM285306) Spiroplasma citri GII3-3X chromosome, contig Cont...    34   5.7    3
(CT025911) Zebrafish DNA sequence from clone CH211-234K10 in...    44   6.1    1
(CR854830) Zebrafish DNA sequence from clone CH211-136I24 in...    44   6.1    1
(CR293524) Zebrafish DNA sequence from clone DKEY-57M7 in li...    44   6.1    1
(BX571817) Zebrafish DNA sequence from clone DKEY-287H13 in ...    44   6.1    1
(CU329671) Schizosaccharomyces pombe chromosome II.                44   6.1    1
(AY391386) Rhodella violacea strain SAG 115.79 photosystem I...    44   6.1    1
(AC214995) Populus trichocarpa clone POP004-B08, complete se...    44   6.1    1
(Z70034) Caenorhabditis elegans Cosmid C18E9.                      44   6.1    1
(EF596893) Drosophila mauritiana strain w12 Dox region, geno...    44   6.1    1
(EF596890) Drosophila simulans strain simB Dox region, genom...    44   6.1    1
(EF596888) Drosophila simulans strain w_e Dox gene, complete...    44   6.1    1
(EF596887) Drosophila simulans strain simB Dox gene, complet...    44   6.1    1
(EF596886) Drosophila simulans strain y_w Dox region, genomi...    44   6.1    1
(EF596885) Drosophila simulans strain lz_v_f Dox region, gen...    44   6.1    1
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    44   6.1    1
(AC140132) Homo sapiens chromosome 5 clone RP11-1308L4, comp...    44   6.1    1
(AC113405) Homo sapiens chromosome 5 clone RP11-467C9, compl...    44   6.1    1
(AC091946) Homo sapiens chromosome 5 clone RP11-360I2, compl...    44   6.1    1
(AC091869) Homo sapiens chromosome 5 clone CTD-2381F15, comp...    44   6.1    1
(AC087359) Homo sapiens chromosome 8, clone RP11-446H10, com...    44   6.1    1
(AC021321) Homo sapiens chromosome 8, clone RP11-23I22, comp...    44   6.1    1
(AC140148) Homo sapiens chromosome 5 clone RP11-580P10, WORK...    44   6.1    1
(AC140020) Homo sapiens chromosome 16 clone xxfos-89533G6, W...    44   6.1    1
(AC139837) Homo sapiens chromosome 5 clone RP11-989D21, WORK...    44   6.1    1
(AC139803) Homo sapiens chromosome 5 clone RP11-1342K20, WOR...    44   6.1    1
(AC113381) Homo sapiens chromosome 5 clone RP11-317L12, WORK...    44   6.1    1
(AC092362) Homo sapiens chromosome 5 clone RP11-392P13, WORK...    44   6.1    1
(AC027222) Homo sapiens chromosome 5 clone RP11-317L12 map 5...    44   6.1    1
(CT583629) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   6.1    1
(AC025779) Homo sapiens chromosome 5 clone RP11-374E21, WORK...    44   6.1    1
(AC020714) Homo sapiens chromosome 8 clone RP11-446H10, WORK...    44   6.1    1
(AC018883) Homo sapiens chromosome 5 clone RP11-360I2, WORKI...    44   6.1    1
(ER643129) SB_BBc87-N04.R SB_BBc Sorghum bicolor genomic 3',...    44   6.1    1
(ER517388) 1093015526444 Global-Ocean-Sampling_GS-35-01-01-1...    44   6.1    1
(EK474602) 1095469474680 Global-Ocean-Sampling_GS-32-01-01-1...    44   6.1    1
(EK409544) 1095505153058 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK343796) 1095467130551 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EK323888) 1095462438259 Global-Ocean-Sampling_GS-31-01-01-1...    44   6.1    1
(EJ017695) 1095439020754 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.1    1
(CZ446388) MCF725k17TR Human MCF7 breast cancer cell line li...    44   6.1    1
(CU037173) Equus caballus GSS, BAC clone CH241-135F17, T7 en...    44   6.1    1
(EB998678) 7432367 CE04 Caenorhabditis elegans cDNA clone 27...    44   6.1    1
(AV199824) Caenorhabditis elegans cDNA clone:yk552c2 : 3' en...    44   6.1    1
(AV180178) Caenorhabditis elegans cDNA clone:yk603f5 : 3' en...    44   6.1    1
(AU211986) Caenorhabditis elegans cDNA clone:yk779c03 : 3' e...    44   6.1    1
(C07880) Caenorhabditis elegans cDNA clone yk168c10 : 3' end...    44   6.1    1
(BJ795903) Caenorhabditis elegans cDNA clone:yk1717g01 : 3' ...    44   6.1    1
(BJ777286) Caenorhabditis elegans cDNA clone:yk1386h06 : 3' ...    44   6.1    1
(BJ133142) Caenorhabditis elegans cDNA clone:yk1073h10 : 3' ...    44   6.1    1
(FG608277) stem_S033_C11.SEQ Opium poppy stem cDNA library P...    44   6.1    1
(CP000724) Alkaliphilus metalliredigens QYMF, complete genome.     44   6.1    1
(AC092450) Homo sapiens chromosome 12 clone RP11-371M20, ***...    40   6.5    4
(AC087896) Homo sapiens 12q BAC RP11-777K21 (Roswell Park Ca...    40   6.5    3
(AY160101) Dictyostelium discoideum strain AX4 nucleotide ex...    40   6.6    3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    34   6.7    6
(CR114228) Forward strand read from insert in 3'HPRT inserti...    38   7.2    2
(AL359835) Human DNA sequence from clone RP11-191J5 on chrom...    40   7.9    2
(CU407211) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    38   8.0    2
(AC168492) Strongylocentrotus purpuratus clone R3-3117H18, W...    42   8.1    2
(AC216897) Homo sapiens FOSMID clone ABC13-910822O6 from chr...    40   8.3    2
(EY116934) HA_MX1_80g03_SP6 Lobster Multiple Tissues, Normal...    30   8.8    3

>(BJ371358) Dictyostelium discoideum cDNA clone:ddc57m17, 5' end,
           single read.
          Length = 633

 Score =  422 bits (213), Expect(3) = e-177
 Identities = 213/213 (100%)
 Strand = Plus / Plus


Query: 419 aatcaaaatgatattttagtatcaaataataaaccgtttaaacaattatttttaaagtca 478
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 aatcaaaatgatattttagtatcaaataataaaccgtttaaacaattatttttaaagtca 478


Query: 479 ttatcaaaaatttataataatccagagattagatttttgggattatcagagattggaaag 538
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 ttatcaaaaatttataataatccagagattagatttttgggattatcagagattggaaag 538


Query: 539 ataataacatcatttataccaacgattggtaaatcaggtagtaatagttcagtgatttca 598
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 ataataacatcatttataccaacgattggtaaatcaggtagtaatagttcagtgatttca 598


Query: 599 ttggatatctctggcaatggtattggcgattat 631
           |||||||||||||||||||||||||||||||||
Sbjct: 599 ttggatatctctggcaatggtattggcgattat 631

 Score =  236 bits (119), Expect(3) = e-177
 Identities = 119/119 (100%)
 Strand = Plus / Plus


Query: 173 attagtaatggtagtaatatgaatttattatcatcaagtactagtggttatggtggtagt 232
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 attagtaatggtagtaatatgaatttattatcatcaagtactagtggttatggtggtagt 232


Query: 233 aatagttttttatctgcaagtaatttacaatttaagaataatagtaatattaatggtac 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 aatagttttttatctgcaagtaatttacaatttaagaataatagtaatattaatggtac 291

 Score = 26.3 bits (13), Expect(3) = e-177
 Identities = 13/13 (100%)
 Strand = Plus / Plus


Query: 72 cagcgacattagg 84
          |||||||||||||
Sbjct: 72 cagcgacattagg 84

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 429,183,716
Number of extensions: 26516030
Number of successful extensions: 2374569
Number of sequences better than 10.0: 104
Length of query: 642
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 619
Effective length of database: 93,106,754,628
Effective search space: 57633081114732
Effective search space used: 57633081114732
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14477-1 (Contig-U14477-1Q) /CSM_Contig/Contig-U14477-1Q.Seq.d
         (642 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mR...    35   1.9
CR860703_1(CR860703|pid:none) Pongo abelii mRNA; cDNA DKFZp459P1...    33   5.4
AY437876_1(AY437876|pid:none) Mus musculus CARMIL mRNA, complete...    33   7.0
(Q6EDY6) RecName: Full=Leucine-rich repeat-containing protein 16...    33   7.0
AK043591_1(AK043591|pid:none) Mus musculus 10 days neonate corte...    33   9.2

>FJ009082_1(FJ009082|pid:none) Homo sapiens CARMIL1a (LRRC16A) mRNA,
           complete cds.
          Length = 1371

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
 Frame = +2

Query: 449 KPFKQLFLKSLSKIYNN---------PEIRFLGLSEIGKIITSFIPTIGKSGSNSSVISL 601
           K F  +  K+L+ + +N           ++ L L++  K+ T     I   GSN+S+  +
Sbjct: 518 KNFNNMKSKNLTPVLDNLVQMIQDEESPLQSLSLAD-SKLKTEVTIIINALGSNTSLTKV 576

Query: 602 DISGNGIGDYG 634
           DISGNG+GD G
Sbjct: 577 DISGNGMGDMG 587

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 445,283,815
Number of extensions: 5940332
Number of successful extensions: 13368
Number of sequences better than 10.0: 5
Number of HSP's gapped: 13364
Number of HSP's successfully gapped: 5
Length of query: 214
Length of database: 1,051,180,864
Length adjustment: 123
Effective length of query: 91
Effective length of database: 653,084,107
Effective search space: 59430653737
Effective search space used: 59430653737
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
PSORT 

 psg: 0.75  gvh: 0.52  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.60  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 84.0 %: mitochondrial
	 12.0 %: nuclear
	  4.0 %: cytoplasmic

>> prediction for Contig-U14477-1 is mit
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0