Contig-U14470-1
Contig ID Contig-U14470-1
Contig update 2002.12.18
Contig sequence
>Contig-U14470-1 (Contig-U14470-1Q) /CSM_Contig/Contig-U14470-1Q.Seq.d
ATCATTATAAATAATAACAGGACAAAATTAAAACTAATCAAATTATCACT
TAGTTTAATAGTAATATAAATAAATTAAAACCAAAAAATTCCCAATTATT
TCATATAAATATCAATAAAATGTCAGAAGATCAAGGTTCAGGAGCAACAA
GAGTTAAATTAGTAGTTGTCGGTGATGGTGCTGTTGGTAAAACATGTCTT
TTAATTTGTTATGCACAAAATGATTTTCCAGTAGATTATGTACCAACTGT
TTTTGAAAATTATACAGCAACCAGAAAGAGAGGAAATGAAGATATTAAAG
TACATTTATGGGATACTGCAGGCCAAGAAGAATATGATCGTTTACGTCCA
TTATCATACCCAGGCGCTGATGTTGTTCTCCTTTGTTTCAGCACAATCAG
TCAATCATCATATGAAGCCATTAGAGATAAATGGGCACCAGAAGTTAATC
ACTATATCCCAGATGTACCATCAATTTTAGTTGGTACTAAAATCGATTTA
CGTGAACAACAACACCCAGATCCAAACTCTGGTAAATTCGAACCAATCAC
TGCCGATATGGGTATTTCAATGCAAAAACAAATTAAAGCCAAGAAATATT
TAGAAGTCTCTGCAAAGACTCGTCAAGGTTTAGAAGAAGTTTTCAGTGCT
GCCATTGAAATCGTTCTTGAATCAAGAGGTATGGATAAAAAGAGTCAAGA
TGGTTCTTCAAGTGCATCTGGTGTTCCATCAGGTGATAAACCAACAAAAG
GAAAAGCAGGTAAAAAGAAATCTGGTTGTATTATACTTTAAATTATAGGA
ATAAAAATAAAAATAAAAATAATAATAATAATAATAAAAAAAAAAAAAAC
AAAAAAAAAAACAAAAAAATCAAAATCTTAAAAAAAAACAAAACAAAACA
AAACAAAACAAAAAAGAAAAGAAAAAGAAAAGCAATTACTTTTTATTTAT
CTTATCTTTTTTTTTTTTTTAAACAAAACAAAAAAAAAAAAAAATAAAAA
AAAAAAAACAATAATTTTTA

Gap no gap
Contig length 1020
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 4343726
End point 4342706
Strand (PLUS/MINUS) MINUS
Number of clones 23
Number of EST 26
Link to clone list U14470
List of clone(s)

est1=CHQ814E,1,715
est2=SSL241F,1,382
est3=SSL439F,1,566
est4=VFJ557F,2,584
est5=VSJ831F,14,479
est6=SSA188F,20,660
est7=SSB507F,23,173
est8=SSF777F,83,688
est9=VSI786F,161,618
est10=SSG623Z,172,843
est11=VSA320Z,189,836
est12=SSC347E,190,836
est13=SSI693Z,193,836
est14=SSE776Z,229,863
est15=SSM513Z,252,856
est16=SSD442Z,257,846
est17=SSK281Z,304,882
est18=SSE332Z,330,872
est19=SSF228Z,366,844
est20=SSE375Z,380,981
est21=SSD566Z,390,863
est22=SLB859E,418,836
est23=SSE665E,481,980
est24=SSB507Z,765,1007
est25=SSL439Z,771,900
est26=SSL241Z,825,1021
Translated Amino Acid sequence
hyk**qdkiktnqiit*FNSNINKLKPKNSQLFHININKMSEDQGSGATRVKLVVVGDGA
VGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYP
GADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFE
PITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEIVLESRGMDKKSQDGSSSASG
VPSGDKPTKGKAGKKKSGCIIL*iigikikikiiiiiikkkktkkktkksks*kktkqnk
tkqkrkekekqllfiylifffflnktkkkknkkkktiif


Translated Amino Acid sequence (All Frames)
Frame A:
iiinnnrtklkliklslslivi*in*nqkipnyfi*isikcqkikvqeqqeln**lsvmv
llvkhvf*fvmhkmifq*imyqlflkiiqqpereemkilkyiygilqakknmivyvhyht
qalmlfsfvsaqsvnhhmkpleinghqklitisqmyhqf*lvlksiyvnnntqiqtlvns
nqslpiwvfqcknklkprni*kslqrlvkv*kkfsvlplksflnqevwikrvkmvlqvhl
vfhqvinqqkekqvkrnlvvlyfkl*e*k*k*k******kkkkqkkkqknqnlkkkqnkt
kqnkkekkkksnyflfilsffff*tkqkkkkikkkkq*fl


Frame B:
sl*iitgqn*n*snyhlv***yk*iktkkfpiisykyq*nvrrsrfrsnks*isscr*wc
cw*nmsfnllctk*fssrlctncf*klysnqkerk*ry*stfmgycrprri*sftsiiip
rr*ccsplfqhnqsiii*sh*r*mgtrs*slyprctinfswy*nrft*tttprsklw*ir
tnhcrygyfnaktn*sqeifrslckdssrfrrsfqcch*nrs*ikryg*kesrwffkciw
csir**tnkrksr*keiwlyytlnyrnknknknnnnnnkkkknkkknkkikilkknktkq
nktkkkrkrkaitfylsylffffkqnkkkkk*kkknnnf


Frame C:
hyk**qdkiktnqiit*FNSNINKLKPKNSQLFHININKMSEDQGSGATRVKLVVVGDGA
VGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIKVHLWDTAGQEEYDRLRPLSYP
GADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSILVGTKIDLREQQHPDPNSGKFE
PITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIEIVLESRGMDKKSQDGSSSASG
VPSGDKPTKGKAGKKKSGCIIL*iigikikikiiiiiikkkktkkktkksks*kktkqnk
tkqkrkekekqllfiylifffflnktkkkknkkkktiif


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14470-1 (Contig-U14470-1Q)
/CSM_Contig/Contig-U14470-1Q.Seq.d
(1020 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14470-1 (Contig-U14470-1Q) /CSM_Contig/Conti... 1344 0.0
Contig-U02685-1 (Contig-U02685-1Q) /CSM_Contig/Conti... 70 5e-12
Contig-U07963-1 (Contig-U07963-1Q) /CSM_Contig/Conti... 68 2e-11
Contig-U14029-1 (Contig-U14029-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U12305-1 (Contig-U12305-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U04314-1 (Contig-U04314-1Q) /CSM_Contig/Conti... 38 0.018
Contig-U11959-1 (Contig-U11959-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U11492-1 (Contig-U11492-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U14031-1 (Contig-U14031-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U12705-1 (Contig-U12705-1Q) /CSM_Contig/Conti... 34 0.28

>Contig-U14470-1 (Contig-U14470-1Q) /CSM_Contig/Contig-U14470-1Q.Seq.d
Length = 1020

Score = 1344 bits (678), Expect = 0.0
Identities = 678/678 (100%)
Strand = Plus / Plus


Query: 122 gtcagaagatcaaggttcaggagcaacaagagttaaattagtagttgtcggtgatggtgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 122 gtcagaagatcaaggttcaggagcaacaagagttaaattagtagttgtcggtgatggtgc 181


Query: 182 tgttggtaaaacatgtcttttaatttgttatgcacaaaatgattttccagtagattatgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tgttggtaaaacatgtcttttaatttgttatgcacaaaatgattttccagtagattatgt 241


Query: 242 accaactgtttttgaaaattatacagcaaccagaaagagaggaaatgaagatattaaagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 accaactgtttttgaaaattatacagcaaccagaaagagaggaaatgaagatattaaagt 301


Query: 302 acatttatgggatactgcaggccaagaagaatatgatcgtttacgtccattatcataccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 acatttatgggatactgcaggccaagaagaatatgatcgtttacgtccattatcataccc 361


Query: 362 aggcgctgatgttgttctcctttgtttcagcacaatcagtcaatcatcatatgaagccat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aggcgctgatgttgttctcctttgtttcagcacaatcagtcaatcatcatatgaagccat 421


Query: 422 tagagataaatgggcaccagaagttaatcactatatcccagatgtaccatcaattttagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tagagataaatgggcaccagaagttaatcactatatcccagatgtaccatcaattttagt 481


Query: 482 tggtactaaaatcgatttacgtgaacaacaacacccagatccaaactctggtaaattcga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tggtactaaaatcgatttacgtgaacaacaacacccagatccaaactctggtaaattcga 541


Query: 542 accaatcactgccgatatgggtatttcaatgcaaaaacaaattaaagccaagaaatattt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 542 accaatcactgccgatatgggtatttcaatgcaaaaacaaattaaagccaagaaatattt 601


Query: 602 agaagtctctgcaaagactcgtcaaggtttagaagaagttttcagtgctgccattgaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 agaagtctctgcaaagactcgtcaaggtttagaagaagttttcagtgctgccattgaaat 661


Query: 662 cgttcttgaatcaagaggtatggataaaaagagtcaagatggttcttcaagtgcatctgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 cgttcttgaatcaagaggtatggataaaaagagtcaagatggttcttcaagtgcatctgg 721


Query: 722 tgttccatcaggtgataaaccaacaaaaggaaaagcaggtaaaaagaaatctggttgtat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 tgttccatcaggtgataaaccaacaaaaggaaaagcaggtaaaaagaaatctggttgtat 781


Query: 782 tatactttaaattatagg 799
||||||||||||||||||
Sbjct: 782 tatactttaaattatagg 799


Score = 127 bits (64), Expect = 3e-29
Identities = 64/64 (100%)
Strand = Plus / Plus


Query: 1 atcattataaataataacaggacaaaattaaaactaatcaaattatcacttagtttaata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atcattataaataataacaggacaaaattaaaactaatcaaattatcacttagtttaata 60


Query: 61 gtaa 64
||||
Sbjct: 61 gtaa 64


Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus


Query: 932 gcaattactttttatttatcttatc 956
|||||||||||||||||||||||||
Sbjct: 932 gcaattactttttatttatcttatc 956


>Contig-U02685-1 (Contig-U02685-1Q) /CSM_Contig/Contig-U02685-1Q.Seq.d
Length = 894

Score = 69.9 bits (35), Expect = 5e-12
Identities = 50/55 (90%)
Strand = Plus / Plus


Query: 153 gttaaattagtagttgtcggtgatggtgctgttggtaaaacatgtcttttaattt 207
|||||| |||||||||| ||||||||||||||||||||||| | ||||||||||
Sbjct: 73 gttaaagtagtagttgtaggtgatggtgctgttggtaaaacttcacttttaattt 127


Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus


Query: 309 tgggatactgcaggccaagaagaatatgatcgtttacgtccattatcata 358
|||||||| || || |||||||| |||||| |||||||||||| |||||
Sbjct: 229 tgggataccgctggtcaagaagattatgataatttacgtccattgtcata 278


>Contig-U07963-1 (Contig-U07963-1Q) /CSM_Contig/Contig-U07963-1Q.Seq.d
Length = 1057

Score = 67.9 bits (34), Expect = 2e-11
Identities = 46/50 (92%)
Strand = Plus / Minus


Query: 309 tgggatactgcaggccaagaagaatatgatcgtttacgtccattatcata 358
|||||||||||||| |||||||| |||||||||||| | |||||||||||
Sbjct: 427 tgggatactgcaggtcaagaagagtatgatcgtttaagaccattatcata 378


Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Minus


Query: 165 gttgtcggtgatggtgctgttggtaaaacatgtcttttaattt 207
||||| ||||||||||| ||||||||||| ||| | |||||||
Sbjct: 571 gttgttggtgatggtgcagttggtaaaacttgtatgttaattt 529


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,732
Number of Sequences: 6905
Number of extensions: 10732
Number of successful extensions: 957
Number of sequences better than 10.0: 96
length of query: 1020
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1004
effective length of database: 5,564,391
effective search space: 5586648564
effective search space used: 5586648564
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.23
Homology vs DNA
Query= Contig-U14470-1 (Contig-U14470-1Q) /CSM_Contig/Contig-U14470-1Q.Seq.d
(1020 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(CS026771) Sequence 323 from Patent WO2005014828. 1328 0.0 1
(C89918) Dictyostelium discoideum slug cDNA, clone SSG623. 1245 0.0 1
(AU051899) Dictyostelium discoideum slug cDNA, clone SSC347. 1178 0.0 1
(C92569) Dictyostelium discoideum slug cDNA, clone SSE776. 1134 0.0 1
(C90539) Dictyostelium discoideum slug cDNA, clone SSI693. 1134 0.0 2
(BJ385497) Dictyostelium discoideum cDNA clone:ddc55l04, 3' ... 1102 0.0 3
(C93275) Dictyostelium discoideum slug cDNA, clone SSM513. 1088 0.0 1
(C92309) Dictyostelium discoideum slug cDNA, clone SSD442. 1078 0.0 1
(AU261418) Dictyostelium discoideum vegetative cDNA clone:VS... 946 0.0 3
(U41222) Dictyostelium discoideum RacE (racE) gene, complete... 729 0.0 6
(AF310890) Dictyostelium discoideum PcmA (pcmA) and RacE (ra... 729 0.0 6
(C91310) Dictyostelium discoideum slug cDNA, clone SSK281. 961 0.0 1
(AU037818) Dictyostelium discoideum slug cDNA, clone SSE332. 934 0.0 1
(BJ370724) Dictyostelium discoideum cDNA clone:ddc55l04, 5' ... 924 0.0 2
(BJ414808) Dictyostelium discoideum cDNA clone:ddv20a15, 5' ... 916 0.0 2
(AU269230) Dictyostelium discoideum vegetative cDNA clone:VS... 906 0.0 1
(AU076323) Dictyostelium discoideum slug cDNA, clone SSA188. 894 0.0 1
(C92755) Dictyostelium discoideum slug cDNA, clone SSF228. 862 0.0 1
(AU037856) Dictyostelium discoideum slug cDNA, clone SSE375. 821 0.0 2
(AU037385) Dictyostelium discoideum slug cDNA, clone SSD566. 783 0.0 1
(AU034054) Dictyostelium discoideum slug cDNA, clone SLB859. 751 0.0 1
(AU270537) Dictyostelium discoideum vegetative cDNA clone:VS... 708 0.0 1
(C92370) Dictyostelium discoideum slug cDNA, clone SSE665. 634 0.0 2
(AU073042) Dictyostelium discoideum slug cDNA, clone SSF777. 398 e-106 1
(AU074543) Dictyostelium discoideum slug cDNA, clone SSL241. 236 7e-64 2
(BJ400070) Dictyostelium discoideum cDNA clone:dds8p13, 3' e... 76 2e-26 3
(CS026775) Sequence 327 from Patent WO2005014828. 76 4e-26 3
(L11589) Slime mold Rac1B protein mRNA, complete cds. 76 4e-26 3
(AU051897) Dictyostelium discoideum slug cDNA, clone SSC344. 76 5e-26 3
(AF310884) Dictyostelium discoideum Rac1B (rac1B) gene, comp... 76 1e-24 3
(AU060584) Dictyostelium discoideum slug cDNA, clone SLK517. 68 5e-24 3
(AU267417) Dictyostelium discoideum vegetative cDNA clone:VS... 70 5e-24 3
(AU266784) Dictyostelium discoideum vegetative cDNA clone:VS... 70 7e-24 3
(AU268527) Dictyostelium discoideum vegetative cDNA clone:VS... 70 8e-24 3
(L11588) Dictyostelium discoideum rac1A protein mRNA, comple... 70 9e-24 3
(AU284231) Dictyostelium discoideum gamete cDNA clone:FC-AB0... 70 1e-23 3
(AU060794) Dictyostelium discoideum slug cDNA, clone SLB519. 70 1e-23 3
(AF309947) Dictyostelium discoideum Rac1A (rac1A) gene, comp... 70 1e-22 3
(CS026777) Sequence 329 from Patent WO2005014828. 78 2e-21 3
(AF153328) Dictyostelium discoideum Rac1C (rac1C) mRNA, comp... 78 2e-21 3
(AU076386) Dictyostelium discoideum slug cDNA, clone SSA690. 78 2e-21 3
(AF310885) Dictyostelium discoideum Rac1C (rac1C) gene, comp... 78 4e-20 3
(AU060480) Dictyostelium discoideum slug cDNA, clone SLJ868. 70 4e-20 2
(EE001571) ROE00009697 Rhizopus oryzae Company Rhizopus oryz... 66 6e-20 3
(EE001539) ROE00009793 Rhizopus oryzae Company Rhizopus oryz... 66 6e-20 3
(AU268288) Dictyostelium discoideum vegetative cDNA clone:VS... 70 7e-20 2
(AU271541) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 70 8e-20 2
(CX099104) EHAHV30TR E. histolytica Normalized cDNA library ... 96 4e-19 2
(CX085540) EHAC691TR E. histolytica Normalized cDNA library ... 96 4e-19 2
(AU265410) Dictyostelium discoideum vegetative cDNA clone:VS... 70 7e-19 4
(L11594) Slime mold RacD protein mRNA, complete cds. 70 2e-18 4
(BJ325504) Dictyostelium discoideum cDNA clone:dda14i24, 5' ... 70 2e-18 4
(CS026769) Sequence 321 from Patent WO2005014828. 70 4e-18 4
(BJ342624) Dictyostelium discoideum cDNA clone:dda14i24, 3' ... 70 4e-18 4
(AU071442) Dictyostelium discoideum slug cDNA, clone SSB507. 103 1e-17 1
(AM637637) Entamoeba dispar GSS, clone dispar46f05.p1k. 86 4e-17 2
(AF310886) Dictyostelium discoideum RacA (racA) gene, comple... 68 4e-17 3
(EE000561) ROE00013776 Rhizopus oryzae Company Rhizopus oryz... 58 4e-17 3
(AU074462) Dictyostelium discoideum slug cDNA, clone SSK792. 70 4e-17 3
(EC825835) SME00006962 esmbsro2 Sawyeria marylandensis cDNA,... 101 5e-17 1
(L11590) Slime mold Rac1C protein mRNA, 3' end. 62 6e-17 3
(AF037042) Dictyostelium discoideum ras-related GTPase RacF1... 68 8e-17 3
(AU271542) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 66 2e-16 2
(L11591) Slime mold RacA protein mRNA, partial cds. 68 2e-16 3
(U30148) Entamoeba histolytica p21racD mRNA, partial cds. 88 4e-16 2
(AM632282) Entamoeba dispar GSS, clone dispar86b06.q1k. 74 5e-16 2
(AZ693168) ENTHL65TR Entamoeba histolytica Sheared DNA Entam... 94 2e-15 2
(CB284327) DF1065 Dermatophagoides farinae cDNA library Derm... 54 1e-14 3
(BY029212) Mus musculus mammary gland RCB-0527 Jyg-MC(B) cDN... 70 2e-14 3
(BY071010) Mus musculus 16 days embryo heart cDNA, RIKEN ful... 62 2e-14 3
(AW226850) um60g11.y1 Sugano mouse liver mlia Mus musculus c... 62 3e-14 3
(DV064842) NEONATAL_23_M05.x1 FH NEONATAL Mus musculus cDNA ... 70 8e-14 2
(BY006102) Mus musculus adult male kidney cDNA, RIKEN full-l... 62 1e-13 3
(BE197430) ug74c11.y1 Soares_mammary_gland_NMLMG Mus musculu... 62 1e-13 3
(AU284686) Dictyostelium discoideum gamete cDNA clone:FC-BH0... 60 2e-13 3
(AU039888) Dictyostelium discoideum slug cDNA, clone SLG677. 60 2e-13 3
(BQ418639) ik55f09.y1 Kaestner ngn3 wt Mus musculus cDNA 5' ... 62 2e-13 3
(CS026767) Sequence 319 from Patent WO2005014828. 60 2e-13 3
(L11593) Slime mold RacC protein mRNA, complete cds. 60 2e-13 3
(AC115584) Dictyostelium discoideum chromosome 2 map complem... 68 3e-13 6
(CX098540) EHAHN17TR E. histolytica Normalized cDNA library ... 86 3e-13 2
(C94218) Dictyostelium discoideum slug cDNA, clone SSK555. 68 3e-13 2
(BY332522) Mus musculus synovial fibroblasts cDNA, RIKEN ful... 64 1e-12 3
(BY349443) Mus musculus whole joints cDNA, RIKEN full-length... 64 1e-12 3
(BY104857) Mus musculus cDNA, RIKEN full-length enriched lib... 64 1e-12 3
(BY333515) Mus musculus synovial fibroblasts cDNA, RIKEN ful... 62 1e-12 3
(CJ078334) Mus musculus morula whole body morula cDNA, RIKEN... 64 1e-12 3
(BB567521) Mus musculus adult male hippocampus cDNA, RIKEN f... 62 1e-12 2
(BU519996) AGENCOURT_10167333 NIH_MGC_134 Mus musculus cDNA ... 62 1e-12 4
(CX080234) EHAA547TF E. histolytica Normalized cDNA library ... 50 1e-12 3
(AI157282) ui45b07.y1 Sugano mouse embryo mewa Mus musculus ... 62 2e-12 3
(BB579075) Mus musculus 12 days embryo female ovary cDNA, RI... 54 2e-12 3
(AA914935) vz10b07.r1 Stratagene mouse heart (#937316) Mus m... 62 2e-12 3
(AW240312) up31g05.y1 NCI_CGAP_Mam2 Mus musculus cDNA clone ... 62 2e-12 3
(CO425297) UI-M-HU0-crc-j-18-0-UI.r1 NIH_BMAP_HU0 Mus muscul... 62 2e-12 3
(AI317040) uk71f12.y1 Schiller mouse AtT20 Mus musculus cDNA... 62 2e-12 3
(BF116987) uz04c05.y1 NCI_CGAP_Mam5 Mus musculus cDNA clone ... 62 2e-12 3
(BF151253) uz14a04.y1 NCI_CGAP_Mam5 Mus musculus cDNA clone ... 62 3e-12 3
(AW319060) um95h02.y1 Sugano mouse embryo mewa Mus musculus ... 62 3e-12 3
(AF310892) Dictyostelium discoideum citrate synthase (gltA) ... 68 3e-12 2

>(CS026771) Sequence 323 from Patent WO2005014828.
Length = 672

Score = 1328 bits (670), Expect = 0.0
Identities = 670/670 (100%)
Strand = Plus / Plus


Query: 122 gtcagaagatcaaggttcaggagcaacaagagttaaattagtagttgtcggtgatggtgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3 gtcagaagatcaaggttcaggagcaacaagagttaaattagtagttgtcggtgatggtgc 62


Query: 182 tgttggtaaaacatgtcttttaatttgttatgcacaaaatgattttccagtagattatgt 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63 tgttggtaaaacatgtcttttaatttgttatgcacaaaatgattttccagtagattatgt 122


Query: 242 accaactgtttttgaaaattatacagcaaccagaaagagaggaaatgaagatattaaagt 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 accaactgtttttgaaaattatacagcaaccagaaagagaggaaatgaagatattaaagt 182


Query: 302 acatttatgggatactgcaggccaagaagaatatgatcgtttacgtccattatcataccc 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 acatttatgggatactgcaggccaagaagaatatgatcgtttacgtccattatcataccc 242


Query: 362 aggcgctgatgttgttctcctttgtttcagcacaatcagtcaatcatcatatgaagccat 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 aggcgctgatgttgttctcctttgtttcagcacaatcagtcaatcatcatatgaagccat 302


Query: 422 tagagataaatgggcaccagaagttaatcactatatcccagatgtaccatcaattttagt 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 tagagataaatgggcaccagaagttaatcactatatcccagatgtaccatcaattttagt 362


Query: 482 tggtactaaaatcgatttacgtgaacaacaacacccagatccaaactctggtaaattcga 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 tggtactaaaatcgatttacgtgaacaacaacacccagatccaaactctggtaaattcga 422


Query: 542 accaatcactgccgatatgggtatttcaatgcaaaaacaaattaaagccaagaaatattt 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 accaatcactgccgatatgggtatttcaatgcaaaaacaaattaaagccaagaaatattt 482


Query: 602 agaagtctctgcaaagactcgtcaaggtttagaagaagttttcagtgctgccattgaaat 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 agaagtctctgcaaagactcgtcaaggtttagaagaagttttcagtgctgccattgaaat 542


Query: 662 cgttcttgaatcaagaggtatggataaaaagagtcaagatggttcttcaagtgcatctgg 721
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 cgttcttgaatcaagaggtatggataaaaagagtcaagatggttcttcaagtgcatctgg 602


Query: 722 tgttccatcaggtgataaaccaacaaaaggaaaagcaggtaaaaagaaatctggttgtat 781
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 tgttccatcaggtgataaaccaacaaaaggaaaagcaggtaaaaagaaatctggttgtat 662


Query: 782 tatactttaa 791
||||||||||
Sbjct: 663 tatactttaa 672

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 925,686,316
Number of extensions: 56316347
Number of successful extensions: 4524075
Number of sequences better than 10.0: 4811
Length of query: 1020
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 996
Effective length of database: 97,308,875,965
Effective search space: 96919640461140
Effective search space used: 96919640461140
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14470-1 (Contig-U14470-1Q) /CSM_Contig/Contig-U14470-1Q.Seq.d
(1020 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q23862) RecName: Full=Rho-related protein racE; Flags: Precurso... 410 e-113
CS026603_1(CS026603|pid:none) Sequence 155 from Patent WO2005014... 246 9e-64
(Q6Z808) RecName: Full=Rac-like GTP-binding protein 3; AltName: ... 199 1e-49
CS560334_1(CS560334|pid:none) Sequence 921 from Patent WO2006032... 199 1e-49
GN079997_1(GN079997|pid:none) Sequence 600 from Patent WO2009027... 199 1e-49
FN315262_1(FN315262|pid:none) Schistosoma japonicum isolate Anhu... 199 1e-49
AB074145_1(AB074145|pid:none) Synthetic construct gene for Raich... 199 2e-49
GN080137_1(GN080137|pid:none) Sequence 740 from Patent WO2009027... 199 2e-49
AJ518932_1(AJ518932|pid:none) Hordeum vulgare subsp. vulgare mRN... 199 2e-49
AY282417_1(AY282417|pid:none) Aplysia californica Rac mRNA, comp... 198 2e-49
EF529818_1(EF529818|pid:none) Musa acuminata rop (rop1) mRNA, co... 197 5e-49
(Q67VP4) RecName: Full=Rac-like GTP-binding protein 4; AltName: ... 197 5e-49
AF126052_1(AF126052|pid:none) Zea mays Rop1 small GTP binding pr... 197 5e-49
CS560168_1(CS560168|pid:none) Sequence 755 from Patent WO2006032... 197 5e-49
AB024996_1(AB024996|pid:none) Cicer arietinum mRNA for rac-type ... 197 6e-49
(P34144) RecName: Full=Rho-related protein rac1A; Flags: Precurs... 197 6e-49
DQ081716_1(DQ081716|pid:none) Paracoccidioides brasiliensis Rac1... 197 6e-49
GN080105_1(GN080105|pid:none) Sequence 708 from Patent WO2009027... 197 6e-49
(P34146) RecName: Full=Rho-related protein rac1C; Flags: Precurs... 197 6e-49
L11588_1(L11588|pid:none) Dictyostelium discoideum rac1A protein... 196 8e-49
AY190720_1(AY190720|pid:none) Pagrus major ras-related C3 botuli... 196 8e-49
CS559768_1(CS559768|pid:none) Sequence 355 from Patent WO2006032... 196 8e-49
GN079451_1(GN079451|pid:none) Sequence 54 from Patent WO20090275... 196 1e-48
AF115476_1(AF115476|pid:none) Physcomitrella patens rac-like GTP... 196 1e-48
EF144250_1(EF144250|pid:none) Populus trichocarpa clone PX0011_N... 196 1e-48
AF233446_1(AF233446|pid:none) Physcomitrella patens rac 1 protei... 196 1e-48
AJ619853_1(AJ619853|pid:none) Medicago sativa mRNA for small GTP... 196 1e-48
AJ508667_1(AJ508667|pid:none) Ciona intestinalis mRNA for Rac1 p... 196 1e-48
AY386260_1(AY386260|pid:none) Schizophyllum commune small GTPase... 195 2e-48
(P92978) RecName: Full=Rac-like GTP-binding protein ARAC11; AltN... 195 2e-48
GN079621_1(GN079621|pid:none) Sequence 224 from Patent WO2009027... 195 2e-48
BC087999_1(BC087999|pid:none) Xenopus tropicalis ras-related C3 ... 195 2e-48
FN314788_1(FN314788|pid:none) Schistosoma japonicum isolate Anhu... 195 2e-48
AL049658_9(AL049658|pid:none) Arabidopsis thaliana DNA chromosom... 195 2e-48
GN079625_1(GN079625|pid:none) Sequence 228 from Patent WO2009027... 195 2e-48
DQ667981_1(DQ667981|pid:none) Gossypium hirsutum small GTPase (R... 195 2e-48
AY813060_1(AY813060|pid:none) Schistosoma japonicum SJCHGC01385 ... 195 2e-48
BX571960_4(BX571960|pid:none) Zebrafish DNA sequence from clone ... 195 2e-48
DQ450841_1(DQ450841|pid:none) Solanum chacoense Rac-like GTP-bin... 195 2e-48
GN079551_1(GN079551|pid:none) Sequence 154 from Patent WO2009027... 195 2e-48
BC071369_1(BC071369|pid:none) Danio rerio ras-related C3 botulin... 195 2e-48
AF174644_1(AF174644|pid:none) Xenopus laevis rac GTPase mRNA, co... 194 3e-48
EF082538_1(EF082538|pid:none) Picea sitchensis clone WS02721_K09... 194 3e-48
BT044876_1(BT044876|pid:none) Salmo salar clone ssal-rgf-506-106... 194 3e-48
(P62998) RecName: Full=Ras-related C3 botulinum toxin substrate ... 194 3e-48
(P48554) RecName: Full=Ras-related protein Rac2; Flags: Precurso... 194 3e-48
AF165925_1(AF165925|pid:none) Gossypium hirsutum RAC-like G-prot... 194 3e-48
BT046927_1(BT046927|pid:none) Salmo salar clone ssal-evf-537-294... 194 3e-48
EU625508_1(EU625508|pid:none) Neurospora crassa small GTPase RAC... 194 3e-48
AJ851813_1(AJ851813|pid:none) Gallus gallus mRNA for hypothetica... 194 3e-48
AB074297_1(AB074297|pid:none) Synthetic construct gene for Raich... 194 3e-48
BT045529_1(BT045529|pid:none) Salmo salar clone ssal-rgf-524-088... 194 3e-48
GN079463_1(GN079463|pid:none) Sequence 66 from Patent WO20090275... 194 3e-48
AF376054_1(AF376054|pid:none) Zea mays putative Rop family GTPas... 194 3e-48
BC054576_1(BC054576|pid:none) Danio rerio ras homolog gene famil... 194 4e-48
GN079679_1(GN079679|pid:none) Sequence 282 from Patent WO2009027... 194 4e-48
(P15153) RecName: Full=Ras-related C3 botulinum toxin substrate ... 194 4e-48
GN080123_1(GN080123|pid:none) Sequence 726 from Patent WO2009027... 194 4e-48
AJ222545_1(AJ222545|pid:none) Nicotiana tabacum mRNA for Rop sub... 194 4e-48
(Q9TU25) RecName: Full=Ras-related C3 botulinum toxin substrate ... 194 4e-48
AY892146_1(AY892146|pid:none) Synthetic construct Homo sapiens c... 194 5e-48
CS026477_1(CS026477|pid:none) Sequence 29 from Patent WO20050148... 194 5e-48
CS560208_1(CS560208|pid:none) Sequence 795 from Patent WO2006032... 194 5e-48
BC155847_1(BC155847|pid:none) Danio rerio zgc:175209, mRNA (cDNA... 194 5e-48
BT045348_1(BT045348|pid:none) Salmo salar clone ssal-rgf-518-373... 194 5e-48
GN080029_1(GN080029|pid:none) Sequence 632 from Patent WO2009027... 194 5e-48
AF495535_1(AF495535|pid:none) Ustilago maydis Rac1 GTP binding p... 194 5e-48
AY889694_1(AY889694|pid:none) Synthetic construct Homo sapiens c... 194 5e-48
AM774590_1(AM774590|pid:none) Claviceps purpurea rac gene for Rh... 194 5e-48
GN080091_1(GN080091|pid:none) Sequence 694 from Patent WO2009027... 194 5e-48
AJ439334_1(AJ439334|pid:none) Hordeum vulgare mRNA for putative ... 194 5e-48
EF060241_1(EF060241|pid:none) Magnaporthe grisea GTP-binding pro... 194 5e-48
AM488526_4(AM488526|pid:none) Vitis vinifera contig VV78X117969.... 194 5e-48
(Q05144) RecName: Full=Ras-related C3 botulinum toxin substrate ... 193 7e-48
AY029330_1(AY029330|pid:none) Nicotiana tabacum Rac-like GTPase ... 193 7e-48
(Q35638) RecName: Full=Rac-like GTP-binding protein RHO1; AltNam... 193 7e-48
(Q40220) RecName: Full=Rac-like GTP-binding protein RAC2; Flags:... 193 7e-48
EU970190_1(EU970190|pid:none) Zea mays clone 341857 rac-like GTP... 193 7e-48
GN079457_1(GN079457|pid:none) Sequence 60 from Patent WO20090275... 193 7e-48
CS559754_1(CS559754|pid:none) Sequence 341 from Patent WO2006032... 193 7e-48
GN080043_1(GN080043|pid:none) Sequence 646 from Patent WO2009027... 193 7e-48
CS026577_1(CS026577|pid:none) Sequence 129 from Patent WO2005014... 193 7e-48
CS026617_1(CS026617|pid:none) Sequence 169 from Patent WO2005014... 193 7e-48
GN080065_1(GN080065|pid:none) Sequence 668 from Patent WO2009027... 193 7e-48
(P40792) RecName: Full=Ras-related protein Rac1; Flags: Precurso... 193 9e-48
AK008435_1(AK008435|pid:none) Mus musculus adult male small inte... 193 9e-48
BT004252_1(BT004252|pid:none) Arabidopsis thaliana clone RAFL15-... 193 9e-48
CS026463_1(CS026463|pid:none) Sequence 15 from Patent WO20050148... 193 9e-48
GN079587_1(GN079587|pid:none) Sequence 190 from Patent WO2009027... 193 9e-48
DQ905959_1(DQ905959|pid:none) Petunia inflata GTP-binding Rop/Ra... 192 1e-47
AJ966572_1(AJ966572|pid:none) Medicago sativa subsp. x varia mRN... 192 1e-47
(P19073) RecName: Full=Cell division control protein 42; AltName... 192 1e-47
(P34148) RecName: Full=Rho-related protein racB; Flags: Precurso... 192 1e-47
CS026539_1(CS026539|pid:none) Sequence 91 from Patent WO20050148... 192 1e-47
AM431253_3(AM431253|pid:none) Vitis vinifera contig VV78X256435.... 192 1e-47
GN079563_1(GN079563|pid:none) Sequence 166 from Patent WO2009027... 192 1e-47
(Q6ZHA3) RecName: Full=Rac-like GTP-binding protein 6; AltName: ... 192 1e-47
AJ508665_1(AJ508665|pid:none) Ciona intestinalis mRNA for Cdc42 ... 192 1e-47
CS026611_1(CS026611|pid:none) Sequence 163 from Patent WO2005014... 192 2e-47
(Q38919) RecName: Full=Rac-like GTP-binding protein ARAC4; AltNa... 192 2e-47
GN080069_1(GN080069|pid:none) Sequence 672 from Patent WO2009027... 192 2e-47
GN080019_1(GN080019|pid:none) Sequence 622 from Patent WO2009027... 192 2e-47
GN080027_1(GN080027|pid:none) Sequence 630 from Patent WO2009027... 192 2e-47
AY865555_1(AY865555|pid:none) Danio rerio ras-like protein Rhoaa... 192 2e-47
EF140700_1(EF140700|pid:none) Lilium longiflorum LLP-Rop1 (LLP-R... 192 2e-47
FJ159428_1(FJ159428|pid:none) Scoparia dulcis clone Sdrac rac-li... 192 2e-47
(Q03206) RecName: Full=Ras-related protein ced-10; AltName: Full... 192 2e-47
AY540629_1(AY540629|pid:none) Aspergillus niger RacA gene, compl... 192 2e-47
AB086182_1(AB086182|pid:none) Zinnia elegans ZeRac2 mRNA for Rac... 192 2e-47
EU637020_14(EU637020|pid:none) Philodina roseola peptidylprolyl ... 192 2e-47
DQ414554_1(DQ414554|pid:none) Suberites domuncula Rac gene, comp... 192 2e-47
CS559704_1(CS559704|pid:none) Sequence 291 from Patent WO2006032... 192 2e-47
AE017353_7(AE017353|pid:none) Cryptococcus neoformans var. neofo... 192 2e-47
AJ439335_1(AJ439335|pid:none) Hordeum vulgare mRNA for putative ... 192 2e-47
CR857377_1(CR857377|pid:none) Pongo abelii mRNA; cDNA DKFZp469A0... 191 3e-47
BC135751_1(BC135751|pid:none) Xenopus tropicalis ras-related C3 ... 191 3e-47
AB012667_1(AB012667|pid:none) Ciona savignyi mRNA for CsCDC42, c... 191 3e-47
(Q38937) RecName: Full=Rac-like GTP-binding protein ARAC5; AltNa... 191 3e-47
AF031428_1(AF031428|pid:none) Arabidopsis thaliana Rho-like GTP ... 191 3e-47
AY168615_1(AY168615|pid:none) Brassica napus putative ROP family... 191 3e-47
(Q9HF56) RecName: Full=Cell division control protein 42; Flags: ... 191 3e-47
AK165512_1(AK165512|pid:none) Mus musculus adult male kidney cDN... 191 3e-47
AY890988_1(AY890988|pid:none) Synthetic construct Homo sapiens c... 191 3e-47
AB260937_1(AB260937|pid:none) Epichloe festucae racA mRNA for Ra... 191 3e-47
AY893819_1(AY893819|pid:none) Synthetic construct Homo sapiens c... 191 3e-47
CS560140_1(CS560140|pid:none) Sequence 727 from Patent WO2006032... 191 3e-47
GN079693_1(GN079693|pid:none) Sequence 296 from Patent WO2009027... 191 3e-47
GN079651_1(GN079651|pid:none) Sequence 254 from Patent WO2009027... 191 3e-47
AY168617_1(AY168617|pid:none) Brassica napus putative ROP family... 191 3e-47
BT051480_1(BT051480|pid:none) Medicago truncatula clone MTYF1_F2... 191 3e-47
AF498359_1(AF498359|pid:none) Medicago truncatula small G-protei... 191 3e-47
GN080097_1(GN080097|pid:none) Sequence 700 from Patent WO2009027... 191 3e-47
AY890987_1(AY890987|pid:none) Synthetic construct Homo sapiens c... 191 3e-47
CU633899_508(CU633899|pid:none) Podospora anserina genomic DNA c... 191 3e-47
AF151015_1(AF151015|pid:none) Xenopus laevis small Rho-like GTPa... 191 3e-47
BC114272_1(BC114272|pid:none) Danio rerio zgc:136799, mRNA (cDNA... 191 5e-47
AY168613_1(AY168613|pid:none) Brassica napus putative ROP family... 191 5e-47
CS026483_1(CS026483|pid:none) Sequence 35 from Patent WO20050148... 191 5e-47
CU928170_331(CU928170|pid:none) Kluyveromyces thermotolerans str... 191 5e-47
AC140545_17(AC140545|pid:none) Medicago truncatula clone mth2-11... 191 5e-47
EU541372_1(EU541372|pid:none) Synthetic construct EGFP-Pak1-Cdc4... 191 5e-47
EU438751_1(EU438751|pid:none) Synthetic construct dsRed1/Pak1/Cd... 191 5e-47
BC075938_1(BC075938|pid:none) Danio rerio ras homolog gene famil... 191 5e-47
AL954868_1(AL954868|pid:none) Zebrafish DNA sequence from clone ... 190 6e-47
(P24406) RecName: Full=Transforming protein RhoA; AltName: Full=... 190 6e-47
AE017348_380(AE017348|pid:none) Cryptococcus neoformans var. neo... 190 6e-47
BT045835_1(BT045835|pid:none) Salmo salar clone ssal-rgf-534-037... 190 6e-47
CR382121_175(CR382121|pid:none) Kluyveromyces lactis strain NRRL... 190 6e-47
CS026489_1(CS026489|pid:none) Sequence 41 from Patent WO20050148... 190 6e-47
FJ629590_1(FJ629590|pid:none) Synthetic construct Drosophila mel... 190 6e-47
(Q17031) RecName: Full=Cdc42 homolog; AltName: Full=25 kDa GTP-b... 190 6e-47
GN079473_1(GN079473|pid:none) Sequence 76 from Patent WO20090275... 190 6e-47
GN080023_1(GN080023|pid:none) Sequence 626 from Patent WO2009027... 190 8e-47
AK168076_1(AK168076|pid:none) Mus musculus TIB-55 BB88 cDNA, RIK... 190 8e-47
AJ966571_1(AJ966571|pid:none) Medicago sativa subsp. x varia mRN... 190 8e-47
BT049366_1(BT049366|pid:none) Salmo salar clone ssal-sjb-006-227... 190 8e-47
AK007561_1(AK007561|pid:none) Mus musculus 10 day old male pancr... 190 8e-47
AY891276_1(AY891276|pid:none) Synthetic construct Homo sapiens c... 190 8e-47
AY168614_1(AY168614|pid:none) Brassica napus putative ROP family... 190 8e-47
AJ344223_1(AJ344223|pid:none) Hordeum vulgare mRNA for RACB prot... 190 8e-47
GN080039_1(GN080039|pid:none) Sequence 642 from Patent WO2009027... 190 8e-47
AJ508672_1(AJ508672|pid:none) Ciona intestinalis mRNA for Rac5 p... 190 8e-47
(O14426) RecName: Full=Cell division control protein 42 homolog;... 190 8e-47
(O82481) RecName: Full=Rac-like GTP-binding protein ARAC10; AltN... 190 8e-47
(Q24817) RecName: Full=Rho-related protein racD; Flags: Precurso... 189 1e-46
AF235004_1(AF235004|pid:none) Suillus bovinus small GTPase Rac1 ... 189 1e-46
AY890985_1(AY890985|pid:none) Synthetic construct Homo sapiens c... 189 1e-46
BC152258_1(BC152258|pid:none) Danio rerio ras homolog gene famil... 189 1e-46
AL603832_6(AL603832|pid:none) Human DNA sequence from clone RP11... 189 1e-46
BC046656_1(BC046656|pid:none) Xenopus laevis similar to plysia r... 189 1e-46
DQ917639_1(DQ917639|pid:none) Sus scrofa RHOG mRNA, complete cds... 189 1e-46
AY883090_1(AY883090|pid:none) Vigna radiata small GTP-binding pr... 189 1e-46
BT046992_1(BT046992|pid:none) Salmo salar clone ssal-rgb2-514-26... 189 1e-46
(Q9SBJ6) RecName: Full=Rac-like GTP-binding protein ARAC6; AltNa... 189 1e-46
(P08134) RecName: Full=Rho-related GTP-binding protein RhoC; Alt... 189 1e-46
AC122722_29(AC122722|pid:none) Medicago truncatula clone mth1-3f... 189 1e-46
AJ251210_1(AJ251210|pid:none) Medicago sativa mRNA for rac G-Pro... 189 1e-46
CS026597_1(CS026597|pid:none) Sequence 149 from Patent WO2005014... 189 1e-46
AY635990_1(AY635990|pid:none) Monacrosporium haptotylum GTPase (... 189 1e-46
EF144316_1(EF144316|pid:none) Populus trichocarpa clone PX0015_I... 189 1e-46
CS559854_1(CS559854|pid:none) Sequence 441 from Patent WO2006032... 189 1e-46
(P84095) RecName: Full=Rho-related GTP-binding protein RhoG; Fla... 189 1e-46
AY893374_1(AY893374|pid:none) Synthetic construct Homo sapiens c... 189 1e-46
CS026775_1(CS026775|pid:none) Sequence 327 from Patent WO2005014... 189 1e-46
BC122003_1(BC122003|pid:none) Xenopus tropicalis cell division c... 189 1e-46
BC114882_1(BC114882|pid:none) Bos taurus ras homolog gene family... 189 1e-46
BT078770_1(BT078770|pid:none) Esox lucius clone eluc-evq-514-303... 189 1e-46
GN080013_1(GN080013|pid:none) Sequence 616 from Patent WO2009027... 189 1e-46
AY891003_1(AY891003|pid:none) Synthetic construct Homo sapiens c... 189 1e-46
BT076635_1(BT076635|pid:none) Caligus rogercresseyi clone crog-e... 189 2e-46
AF547164_1(AF547164|pid:none) Brugia malayi GTP-binding protein ... 189 2e-46
AK167917_1(AK167917|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 189 2e-46
AK167400_1(AK167400|pid:none) Mus musculus 15 days pregnant adul... 189 2e-46
CS026459_1(CS026459|pid:none) Sequence 11 from Patent WO20050148... 189 2e-46
AF098515_1(AF098515|pid:none) Gallus gallus GTP-binding protein ... 189 2e-46
(Q9PSX7) RecName: Full=Rho-related GTP-binding protein RhoC; Fla... 189 2e-46
AY987399_1(AY987399|pid:none) Phallusia mammilata CDC42 mRNA, co... 189 2e-46
GN079531_1(GN079531|pid:none) Sequence 134 from Patent WO2009027... 189 2e-46
GN080119_1(GN080119|pid:none) Sequence 722 from Patent WO2009027... 189 2e-46
BT074645_1(BT074645|pid:none) Osmerus mordax clone omor-eva-007-... 189 2e-46
U64920_1(U64920|pid:none) Arabidopsis thaliana geranylgeranylate... 189 2e-46
AY865566_1(AY865566|pid:none) Danio rerio ras-like protein Cdc42... 189 2e-46
AK175214_1(AK175214|pid:none) Arabidopsis thaliana mRNA for Arac... 189 2e-46
PDBN(1CEE)A MOL_ID: 1;MOL_ID: 1; MOLECULE: GTP-BINDING RHO-LIKE ... 188 2e-46
AY780571_1(AY780571|pid:none) Oryctolagus cuniculus small GTP bi... 188 2e-46
AF153428_1(AF153428|pid:none) Drosophila melanogaster CDC42 prot... 188 2e-46
AF014371_1(AF014371|pid:none) Mus musculus Rho family GTPase (Ar... 188 2e-46
GN080021_1(GN080021|pid:none) Sequence 624 from Patent WO2009027... 188 2e-46
(P60952) RecName: Full=Cell division control protein 42 homolog;... 188 2e-46
CS026479_1(CS026479|pid:none) Sequence 31 from Patent WO20050148... 188 2e-46
BC166849_1(BC166849|pid:none) Rattus norvegicus ras homolog gene... 188 2e-46
CS026461_1(CS026461|pid:none) Sequence 13 from Patent WO20050148... 188 2e-46
EF043870_1(EF043870|pid:none) Synthetic construct clone ATCC 103... 188 2e-46
AY890747_1(AY890747|pid:none) Synthetic construct Homo sapiens c... 188 2e-46
BC053200_1(BC053200|pid:none) Danio rerio ras homolog gene famil... 188 2e-46
EU178798_1(EU178798|pid:none) Medicago truncatula strain Jemalon... 188 2e-46
FN392319_112(FN392319|pid:none) Pichia pastoris GS115 chromosome... 188 3e-46
(O88931) RecName: Full=Ras-related C3 botulinum toxin substrate ... 188 3e-46
AF126054_1(AF126054|pid:none) Zea mays Rop3 small GTP binding pr... 188 3e-46
DQ402135_1(DQ402135|pid:none) Tuber borchii small GTPase CDC42 (... 188 3e-46
GN079543_1(GN079543|pid:none) Sequence 146 from Patent WO2009027... 188 3e-46
(Q38903) RecName: Full=Rac-like GTP-binding protein ARAC2; AltNa... 188 3e-46
AJ278664_1(AJ278664|pid:none) Zea mays mRNA for putative Rop fam... 188 3e-46
BT049636_1(BT049636|pid:none) Salmo salar clone ssal-eve-557-248... 188 3e-46
GN080025_1(GN080025|pid:none) Sequence 628 from Patent WO2009027... 188 3e-46
CS026565_1(CS026565|pid:none) Sequence 117 from Patent WO2005014... 188 3e-46
AF085341_1(AF085341|pid:none) Cavia porcellus ras-related protei... 188 3e-46
AY542314_1(AY542314|pid:none) Pneumocystis carinii CDC42p (cdc42... 188 3e-46
AY168618_1(AY168618|pid:none) Brassica napus putative ROP family... 188 3e-46
CS559856_1(CS559856|pid:none) Sequence 443 from Patent WO2006032... 188 3e-46
DQ087398_1(DQ087398|pid:none) Biomphalaria glabrata guanine nucl... 187 4e-46
GN079631_1(GN079631|pid:none) Sequence 234 from Patent WO2009027... 187 4e-46
AF153424_1(AF153424|pid:none) Drosophila melanogaster CDC42 prot... 187 4e-46
(Q41254) RecName: Full=Rac-like GTP-binding protein RAC9; Flags:... 187 4e-46
BT077726_1(BT077726|pid:none) Lepeophtheirus salmonis Pacific fo... 187 4e-46
BT045463_1(BT045463|pid:none) Salmo salar clone ssal-rgf-522-095... 187 4e-46
GN079539_1(GN079539|pid:none) Sequence 142 from Patent WO2009027... 187 4e-46
(Q4R4R6) RecName: Full=Cell division control protein 42 homolog;... 187 4e-46
AF153426_1(AF153426|pid:none) Drosophila melanogaster CDC42 prot... 187 4e-46
AY865567_1(AY865567|pid:none) Danio rerio ras-like protein Cdc42... 187 4e-46
AY040368_1(AY040368|pid:none) Schizophyllum commune small GTPase... 187 4e-46
AY890847_1(AY890847|pid:none) Synthetic construct Homo sapiens c... 187 5e-46
AY028946_1(AY028946|pid:none) Colletotrichum trifolii GTPase CDC... 187 5e-46
(Q24816) RecName: Full=Rho-related protein racC; Flags: Precurso... 187 5e-46
BT048099_1(BT048099|pid:none) Salmo salar clone ssal-evd-530-096... 187 5e-46
BC122391_1(BC122391|pid:none) Danio rerio zgc:153713, mRNA (cDNA... 187 5e-46
BT046314_1(BT046314|pid:none) Salmo salar clone ssal-rgb2-571-33... 187 5e-46
EU541371_1(EU541371|pid:none) Synthetic construct EGFP-Pak1-Rac1... 187 7e-46
BT043687_1(BT043687|pid:none) Salmo salar clone HM5_1941 ras hom... 187 7e-46
CS559938_1(CS559938|pid:none) Sequence 525 from Patent WO2006032... 187 7e-46
EU438750_1(EU438750|pid:none) Synthetic construct dsRed1/Pak1/Ra... 187 7e-46
AF498974_1(AF498974|pid:none) Homo sapiens small GTP binding pro... 187 7e-46
AM433118_4(AM433118|pid:none) Vitis vinifera contig VV78X112443.... 187 7e-46
AE017343_497(AE017343|pid:none) Cryptococcus neoformans var. neo... 186 9e-46
GN079535_1(GN079535|pid:none) Sequence 138 from Patent WO2009027... 186 9e-46
AK051543_1(AK051543|pid:none) Mus musculus 12 days embryo spinal... 186 9e-46
BC067992_1(BC067992|pid:none) Xenopus tropicalis ras homolog gen... 186 9e-46
BC165903_1(BC165903|pid:none) Danio rerio ras homolog gene famil... 186 9e-46
BT045298_1(BT045298|pid:none) Salmo salar clone ssal-rgf-517-316... 186 9e-46
GN079453_1(GN079453|pid:none) Sequence 56 from Patent WO20090275... 186 9e-46
BC110757_1(BC110757|pid:none) Xenopus laevis hypothetical protei... 186 1e-45
BC064792_1(BC064792|pid:none) Mus musculus cell division cycle 4... 186 1e-45
GN079619_1(GN079619|pid:none) Sequence 222 from Patent WO2009027... 186 1e-45
AF250928_1(AF250928|pid:none) Pyricularia grisea GTP-binding pro... 186 1e-45
GN080145_1(GN080145|pid:none) Sequence 748 from Patent WO2009027... 186 1e-45
GN079589_1(GN079589|pid:none) Sequence 192 from Patent WO2009027... 186 1e-45
GN079471_1(GN079471|pid:none) Sequence 74 from Patent WO20090275... 186 1e-45
(P01122) RecName: Full=Ras-like GTP-binding protein RHO; Flags: ... 186 1e-45
PDBN(1CF4)A MOL_ID: 1;MOL_ID: 1; MOLECULE: CDC42; MOLECULE: CDC4... 186 1e-45
GN079517_1(GN079517|pid:none) Sequence 120 from Patent WO2009027... 186 1e-45
AK343086_1(AK343086|pid:none) Acyrthosiphon pisum ACYPI000070 mR... 186 1e-45
AY398322_1(AY398322|pid:none) Danio rerio clone RK073A1F03 cell ... 186 1e-45
BT082948_1(BT082948|pid:none) Anoplopoma fimbria clone afim-evh-... 185 2e-45
BT082911_1(BT082911|pid:none) Anoplopoma fimbria clone afim-evh-... 185 2e-45
AF234180_1(AF234180|pid:none) Suillus bovinus small GTPase CDC42... 185 2e-45
CR382128_622(CR382128|pid:none) Yarrowia lipolytica strain CLIB1... 185 2e-45
BT077356_1(BT077356|pid:none) Lepeophtheirus salmonis Pacific fo... 185 2e-45
(Q41253) RecName: Full=Rac-like GTP-binding protein RAC13; Flags... 185 2e-45
GN080121_1(GN080121|pid:none) Sequence 724 from Patent WO2009027... 185 3e-45
(Q01112) RecName: Full=Cell division control protein 42 homolog;... 185 3e-45
GN080051_1(GN080051|pid:none) Sequence 654 from Patent WO2009027... 185 3e-45
PDBN(1A4R)A MOL_ID: 1;MOL_ID: 1; MOLECULE: G25K GTP-BINDING PROT... 185 3e-45
BC059300_1(BC059300|pid:none) Xenopus laevis hypothetical protei... 185 3e-45
AK166383_1(AK166383|pid:none) Mus musculus mammary gland RCB-052... 184 3e-45
GN079655_1(GN079655|pid:none) Sequence 258 from Patent WO2009027... 184 3e-45
DQ257288_1(DQ257288|pid:none) Capsicum annuum Rho mRNA, complete... 184 3e-45
AE014297_4321(AE014297|pid:none) Drosophila melanogaster chromos... 184 3e-45
AF140785_1(AF140785|pid:none) Schistosoma mansoni Rho GTPase mRN... 184 3e-45
AB262074_1(AB262074|pid:none) Branchiostoma belcheri Rho mRNA fo... 184 3e-45
GN079989_1(GN079989|pid:none) Sequence 592 from Patent WO2009027... 184 4e-45
(O76321) RecName: Full=Rho-related protein racG; Flags: Precurso... 184 4e-45
AF233447_1(AF233447|pid:none) Physcomitrella patens rac 4 protei... 184 6e-45
AJ508664_1(AJ508664|pid:none) Ciona intestinalis mRNA for RhoA p... 184 6e-45
FN357616_22(FN357616|pid:none) Schistosoma mansoni genome sequen... 184 6e-45
AY223321_1(AY223321|pid:none) Schistosoma japonicum clone ZZD643... 183 7e-45
PDBF(1A2B) MOL_ID: 1; MOLECULE: TRANSFORMING PROTEIN RHOA; CHAIN... 183 1e-44
AY438585_1(AY438585|pid:none) Fucus distichus Rho family GTPase ... 183 1e-44
AJ719416_1(AJ719416|pid:none) Gallus gallus mRNA for hypothetica... 183 1e-44
AF217198_1(AF217198|pid:none) Emericella nidulans MODA (modA) mR... 183 1e-44
AJ518933_1(AJ518933|pid:none) Hordeum vulgare subsp. vulgare mRN... 182 1e-44
AF209750_1(AF209750|pid:none) Yarrowia lipolytica Cdc42p (CDC42)... 182 1e-44
S54295(S54295;S65351)GTP-binding protein Rac1 - fruit fly (Droso... 182 1e-44
AK067796_1(AK067796|pid:none) Oryza sativa Japonica Group cDNA c... 182 1e-44
AY574638_1(AY574638|pid:none) Rhopalosiphum padi Rho family smal... 182 2e-44
AM270040_28(AM270040|pid:none) Aspergillus niger contig An02c046... 182 2e-44
AY622688_1(AY622688|pid:none) Marsupenaeus japonicus Rho (Rho) m... 182 2e-44
EF525177_1(EF525177|pid:none) Paracoccidioides brasiliensis Rho-... 182 2e-44
DQ225184_1(DQ225184|pid:none) Lytechinus variegatus Ras homology... 182 2e-44
AJ496229_1(AJ496229|pid:none) Nicotiana tabacum partial mRNA for... 182 2e-44
BT073747_1(BT073747|pid:none) Oncorhynchus mykiss clone omyk-evo... 182 2e-44
AY814253_1(AY814253|pid:none) Schistosoma japonicum SJCHGC07016 ... 182 2e-44
CS026621_1(CS026621|pid:none) Sequence 173 from Patent WO2005014... 182 2e-44
(O95916) Putative Ras-related C3 botulinum toxin substrate 4 (p2... 182 2e-44
GN079623_1(GN079623|pid:none) Sequence 226 from Patent WO2009027... 182 2e-44
AF330694_1(AF330694|pid:none) Penicillium marneffei CDC42-like p... 182 2e-44
AB017703_1(AB017703|pid:none) Hemicentrotus pulcherrimus gene fo... 181 4e-44
CP000496_312(CP000496|pid:none) Pichia stipitis CBS 6054 chromos... 181 5e-44
DQ414555_1(DQ414555|pid:none) Suberites domuncula Rho1 gene, com... 181 5e-44
(P17081) RecName: Full=Rho-related GTP-binding protein RhoQ; Alt... 180 6e-44
(P22122) RecName: Full=Ras-like GTP-binding protein O-RHO; Flags... 180 6e-44
FJ618515_1(FJ618515|pid:none) Eriobotrya japonica ROP2 mRNA, par... 180 8e-44
(Q8R527) RecName: Full=Rho-related GTP-binding protein RhoQ; Alt... 180 8e-44
M64595_1(M64595|pid:none) Human small G protein (Gx) mRNA, 3' end. 180 8e-44
D84477_1(D84477|pid:none) Rattus norvegicus mRNA for RhoA, parti... 180 8e-44
GN079467_1(GN079467|pid:none) Sequence 70 from Patent WO20090275... 179 1e-43
AB060650_1(AB060650|pid:none) Mus musculus mRNA for small GTPase... 179 1e-43
BC083656_1(BC083656|pid:none) Rattus norvegicus RSA-14-44 protei... 178 2e-43
AF372468_1(AF372468|pid:none) Gallus gallus Rho small GTPase TC1... 178 3e-43
AJ508674_1(AJ508674|pid:none) Ciona intestinalis mRNA for Rcl2 p... 178 3e-43
EU625509_1(EU625509|pid:none) Neurospora crassa Rho-type GTPase ... 178 3e-43
BT080654_1(BT080654|pid:none) Caligus clemensi clone ccle-evs-51... 178 3e-43
AY815961_1(AY815961|pid:none) Schistosoma japonicum SJCHGC06334 ... 177 4e-43
AK006363_1(AK006363|pid:none) Mus musculus adult male testis cDN... 177 5e-43
AY644387_1(AY644387|pid:none) Oryctolagus cuniculus small GTP-bi... 177 5e-43
AY644386_1(AY644386|pid:none) Oryctolagus cuniculus ras-related ... 177 7e-43
BT075679_1(BT075679|pid:none) Osmerus mordax clone omor-eva-505-... 177 7e-43
(Q9GPS3) RecName: Full=Rho-related protein racF2; Flags: Precurs... 177 7e-43
FJ618513_1(FJ618513|pid:none) Eriobotrya japonica ROP1.1 mRNA, p... 176 9e-43
AL663030_40(AL663030|pid:none) Mouse DNA sequence from clone RP2... 176 9e-43
BC044508_1(BC044508|pid:none) Danio rerio ras homolog gene famil... 176 1e-42
AY865562_1(AY865562|pid:none) Danio rerio ras-like protein Rhogb... 176 1e-42
AJ297732_1(AJ297732|pid:none) Ciona intestinalis mRNA for ras-li... 176 2e-42
CU638743_555(CU638743|pid:none) Podospora anserina genomic DNA c... 176 2e-42
FN320133_1(FN320133|pid:none) Schistosoma japonicum isolate Anhu... 176 2e-42
(O96390) RecName: Full=Rho-related protein racF1; Flags: Precurs... 175 2e-42
DQ206462_1(DQ206462|pid:none) Platynereis dumerilii isolate TOA4... 175 2e-42
CS026623_1(CS026623|pid:none) Sequence 175 from Patent WO2005014... 175 2e-42
EU477372_1(EU477372|pid:none) Mus musculus testis specific expre... 175 2e-42
AF087862_1(AF087862|pid:none) Homo sapiens raslp2 mRNA, complete... 175 2e-42
AY007299_1(AY007299|pid:none) Aspergillus fumigatus GTPase Rho3 ... 175 3e-42
AB209218_1(AB209218|pid:none) Homo sapiens mRNA for TC10-like Rh... 175 3e-42
DQ206545_1(DQ206545|pid:none) Leucosolenia sp. AR-2003 isolate T... 175 3e-42
AM920429_193(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 175 3e-42
AB464131_1(AB464131|pid:none) Synthetic construct DNA, clone: pF... 175 3e-42
EZ000160_1(EZ000160|pid:none) TSA: Schistosoma japonicum SJCHGC0... 174 3e-42
CR382138_155(CR382138|pid:none) Debaryomyces hansenii strain CBS... 174 3e-42
AY149343_1(AY149343|pid:none) Rattus norvegicus RSA-14-44 mRNA, ... 174 4e-42
AY059622_1(AY059622|pid:none) Entamoeba histolytica Rho-like sma... 174 4e-42
DQ206494_1(DQ206494|pid:none) Priapulus caudatus isolate TOA4 ce... 174 4e-42
DQ991433_1(DQ991433|pid:none) Cryptococcus neoformans var. grubi... 174 4e-42
AE017346_15(AE017346|pid:none) Cryptococcus neoformans var. neof... 174 6e-42
AY865561_1(AY865561|pid:none) Danio rerio ras-like protein Rhoga... 174 6e-42
AK341129_1(AK341129|pid:none) Acyrthosiphon pisum ACYPI005996 mR... 174 6e-42
GN079579_1(GN079579|pid:none) Sequence 182 from Patent WO2009027... 172 1e-41
BT081450_1(BT081450|pid:none) Rana catesbeiana clone rcat-evr-50... 172 1e-41
CR382130_43(CR382130|pid:none) Yarrowia lipolytica strain CLIB12... 172 1e-41
DQ206569_1(DQ206569|pid:none) Aphrocallistes vastus isolate TOA4... 172 1e-41
AF395859_1(AF395859|pid:none) Blumeria graminis GTPase rho1 (rho... 172 2e-41
AY457922_1(AY457922|pid:none) Brugia malayi ras gene, partial cds. 172 2e-41
AM270411_2(AM270411|pid:none) Aspergillus niger contig An18c0190... 172 2e-41
BT049042_1(BT049042|pid:none) Salmo salar clone ssal-eve-520-128... 172 2e-41
FN357462_11(FN357462|pid:none) Schistosoma mansoni genome sequen... 172 2e-41
BC074226_1(BC074226|pid:none) Xenopus laevis MGC83410 protein, m... 171 3e-41
AY813134_1(AY813134|pid:none) Schistosoma japonicum SJCHGC01977 ... 171 3e-41
(Q3SZA1) RecName: Full=Rho-related GTP-binding protein RhoF; Fla... 171 4e-41
FN319029_1(FN319029|pid:none) Schistosoma japonicum isolate Anhu... 171 4e-41
AF310887_1(AF310887|pid:none) Dictyostelium discoideum RacB (rac... 171 4e-41
AY884607_1(AY884607|pid:none) Fusarium oxysporum small GTPase-bi... 171 4e-41
L11594_1(L11594|pid:none) Slime mold RacD protein mRNA, complete... 171 4e-41
AY159240_1(AY159240|pid:none) Entamoeba histolytica Rho-like sma... 171 5e-41
AJ784433_1(AJ784433|pid:none) Suberites domuncula mRNA for small... 171 5e-41
BC044425_1(BC044425|pid:none) Danio rerio ras homolog gene famil... 171 5e-41
AB035355_1(AB035355|pid:none) Drosophila melanogaster mRNA for D... 171 5e-41
(O42825) RecName: Full=GTP-binding protein RHO1; Flags: Precurso... 170 6e-41
CU928176_54(CU928176|pid:none) Zygosaccharomyces rouxii strain C... 170 8e-41
AK157518_1(AK157518|pid:none) Mus musculus activated spleen cDNA... 169 1e-40
AY159241_1(AY159241|pid:none) Entamoeba histolytica Rho-like sma... 169 1e-40
CU928170_778(CU928170|pid:none) Kluyveromyces thermotolerans str... 169 1e-40
(P06780) RecName: Full=GTP-binding protein RHO1; AltName: Full=R... 169 1e-40
(Q9ER71) RecName: Full=Rho-related GTP-binding protein RhoJ; Alt... 169 1e-40
BC024626_1(BC024626|pid:none) Mus musculus ras homolog gene fami... 169 1e-40
BT047694_1(BT047694|pid:none) Salmo salar clone ssal-evd-544-141... 169 1e-40
CU928170_779(CU928170|pid:none) Kluyveromyces thermotolerans str... 169 2e-40
CR761281_1(CR761281|pid:none) Xenopus tropicalis finished cDNA, ... 169 2e-40
AY318776_1(AY318776|pid:none) Trichomonas vaginalis Rac1-related... 169 2e-40
BC136059_1(BC136059|pid:none) Xenopus tropicalis hypothetical pr... 168 2e-40
AP007155_66(AP007155|pid:none) Aspergillus oryzae RIB40 genomic ... 168 3e-40
CR382134_495(CR382134|pid:none) Debaryomyces hansenii strain CBS... 168 3e-40
(Q94124) RecName: Full=Ras-related protein rac-2; Flags: Precurs... 168 3e-40
DQ917638_1(DQ917638|pid:none) Sus scrofa RHOF mRNA, complete cds. 168 3e-40
GN079999_1(GN079999|pid:none) Sequence 602 from Patent WO2009027... 167 4e-40
AY865570_1(AY865570|pid:none) Danio rerio ras-like protein Rac3 ... 167 4e-40
CR380955_361(CR380955|pid:none) Candida glabrata strain CBS138 c... 167 5e-40
BT078389_1(BT078389|pid:none) Lepeophtheirus salmonis Pacific fo... 167 5e-40
(Q9HE04) RecName: Full=GTP-binding protein rho5; Flags: Precurso... 166 9e-40
BX248118_2(BX248118|pid:none) Zebrafish DNA sequence from clone ... 166 9e-40
AE016815_395(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 166 1e-39
BX088560_3(BX088560|pid:none) Zebrafish DNA sequence from clone ... 166 1e-39
AB017639_1(AB017639|pid:none) Filobasidiella neoformans mRNA for... 166 1e-39
CP000497_68(CP000497|pid:none) Pichia stipitis CBS 6054 chromoso... 166 2e-39
AY007297_1(AY007297|pid:none) Aspergillus fumigatus GTPase Rho1 ... 165 2e-39
FN357462_12(FN357462|pid:none) Schistosoma mansoni genome sequen... 165 2e-39
AJ508671_1(AJ508671|pid:none) Ciona intestinalis mRNA for Rac4 p... 165 2e-39
GN079663_1(GN079663|pid:none) Sequence 266 from Patent WO2009027... 165 2e-39
(Q96WY0) RecName: Full=GTP-binding protein rhoC; AltName: Full=R... 165 2e-39
BT075963_1(BT075963|pid:none) Caligus rogercresseyi clone crog-e... 165 2e-39
U79759_1(U79759|pid:none) Gallus gallus GTPase cRhoC (cRhoC) mRN... 165 3e-39
GN079659_1(GN079659|pid:none) Sequence 262 from Patent WO2009027... 165 3e-39
BT074175_1(BT074175|pid:none) Oncorhynchus mykiss clone omyk-evo... 164 4e-39
D10007_1(D10007|pid:none) Saccharomyces cerevisiae RHO4 gene, co... 164 4e-39
(Q00246) RecName: Full=GTP-binding protein RHO4; Flags: Precurso... 164 4e-39
(O00212) RecName: Full=Rho-related GTP-binding protein RhoD; Alt... 164 5e-39
BT073786_1(BT073786|pid:none) Oncorhynchus mykiss clone omyk-evo... 163 8e-39
CR382131_940(CR382131|pid:none) Yarrowia lipolytica strain CLIB1... 163 8e-39
BT073934_1(BT073934|pid:none) Oncorhynchus mykiss clone omyk-evo... 163 8e-39
CS026757_1(CS026757|pid:none) Sequence 309 from Patent WO2005014... 163 8e-39
(Q8J212) RecName: Full=GTP-binding protein Rho1; Flags: Precurso... 163 8e-39
AF379682_1(AF379682|pid:none) Aspergillus nidulans Rho3 GTPase (... 163 1e-38
(P33153) RecName: Full=GTP-binding RHO-like protein; Flags: Prec... 163 1e-38
GN079661_1(GN079661|pid:none) Sequence 264 from Patent WO2009027... 163 1e-38
GN079641_1(GN079641|pid:none) Sequence 244 from Patent WO2009027... 162 2e-38
AE017347_273(AE017347|pid:none) Cryptococcus neoformans var. neo... 162 2e-38
AM920436_303(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 162 2e-38
GN103298_1(GN103298|pid:none) Sequence 8079 from Patent WO200903... 161 3e-38
AJ720254_1(AJ720254|pid:none) Gallus gallus partial mRNA for hyp... 161 3e-38
CR382136_658(CR382136|pid:none) Debaryomyces hansenii strain CBS... 161 3e-38
AB170683_1(AB170683|pid:none) Macaca fascicularis brain cDNA clo... 161 4e-38
AL121736_1(AL121736|pid:none) Isoform of human GTP-binding prote... 161 4e-38
AE017347_445(AE017347|pid:none) Cryptococcus neoformans var. neo... 160 5e-38
GN079557_1(GN079557|pid:none) Sequence 160 from Patent WO2009027... 160 5e-38
AM434203_1(AM434203|pid:none) Vitis vinifera contig VV78X235801.... 160 7e-38
BX004884_4(BX004884|pid:none) Zebrafish DNA sequence from clone ... 160 9e-38
(Q9HF54) RecName: Full=GTP-binding protein RHO1; Flags: Precurso... 160 9e-38
AP007166_532(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 160 9e-38
AL603832_7(AL603832|pid:none) Human DNA sequence from clone RP11... 160 9e-38
T37769(T37769)rho1-like protein - fission yeast (Schizosaccharom... 159 1e-37
FN357317_1(FN357317|pid:none) Schistosoma mansoni genome sequenc... 159 2e-37
BT075506_1(BT075506|pid:none) Osmerus mordax clone omor-rgc-517-... 159 2e-37
AB028167_1(AB028167|pid:none) Giardia intestinalis GlRacA mRNA f... 158 3e-37
(A5D7J5) RecName: Full=Rho-related GTP-binding protein RhoU; &B... 158 3e-37
AY865564_1(AY865564|pid:none) Danio rerio ras-like protein Rhoua... 158 3e-37
GN103324_1(GN103324|pid:none) Sequence 8105 from Patent WO200903... 157 4e-37
AJ292085_1(AJ292085|pid:none) Platichthys flesus partial mRNA fo... 157 7e-37
(Q9EQT3) RecName: Full=Rho-related GTP-binding protein RhoU; Alt... 156 1e-36
CU638744_37(CU638744|pid:none) Podospora anserina genomic DNA ch... 156 1e-36
AJ508677_1(AJ508677|pid:none) Ciona intestinalis mRNA for Wrch p... 156 1e-36
AL603832_4(AL603832|pid:none) Human DNA sequence from clone RP11... 155 2e-36
CU928170_237(CU928170|pid:none) Kluyveromyces thermotolerans str... 155 3e-36
(P31021) RecName: Full=Ras-like GTP-binding protein RHO1; &L038... 155 3e-36
L03809_2(L03809|pid:none) Entamoeba histolytica G protein (ras h... 155 3e-36
AE016815_72(AE016815|pid:none) Ashbya gossypii (= Eremothecium g... 154 5e-36
AC136504_30(AC136504|pid:none) Medicago truncatula clone mth2-13... 154 6e-36
CP000586_290(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 154 6e-36
AJ290420_1(AJ290420|pid:none) Hordeum vulgare partial mRNA for s... 154 6e-36
AM488026_2(AM488026|pid:none) Vitis vinifera contig VV78X209729.... 153 8e-36
CU928166_288(CU928166|pid:none) Kluyveromyces thermotolerans str... 153 8e-36
AJ508670_1(AJ508670|pid:none) Ciona intestinalis partial mRNA fo... 152 2e-35
AM920435_753(AM920435|pid:none) Penicillium chrysogenum Wisconsi... 152 2e-35
Z14126_1(Z14126|pid:none) S.cerevisiae RNC1 gene for RhoNUC prot... 152 2e-35
CR382124_340(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 152 2e-35
AL121737_1(AL121737|pid:none) Isoform of human GTP-binding prote... 152 2e-35
AJ508676_1(AJ508676|pid:none) Ciona intestinalis mRNA for TC10 p... 152 2e-35
FM992689_704(FM992689|pid:none) Candida dubliniensis CD36 chromo... 151 3e-35
EF524070_1(EF524070|pid:none) Mus musculus Ras homolog gene fami... 151 4e-35
CR933464_1(CR933464|pid:none) Paramecium tetraurelia, Small GTPa... 151 4e-35
CU928175_397(CU928175|pid:none) Zygosaccharomyces rouxii strain ... 150 5e-35
FN392322_218(FN392322|pid:none) Pichia pastoris GS115 chromosome... 150 5e-35
(Q9P8V0) RecName: Full=GTP-binding protein RHO4; Flags: Precurso... 150 5e-35
AK071126_1(AK071126|pid:none) Oryza sativa Japonica Group cDNA c... 150 5e-35
AY496954_1(AY496954|pid:none) Paracoccidioides brasiliensis Rho2... 150 9e-35
AC115584_17(AC115584|pid:none) Dictyostelium discoideum chromoso... 150 9e-35
FN392321_611(FN392321|pid:none) Pichia pastoris GS115 chromosome... 149 2e-34
AX717078_1(AX717078|pid:none) Sequence 69 from Patent WO03020939... 149 2e-34
BC078068_1(BC078068|pid:none) Xenopus laevis rac-2 protein, mRNA... 149 2e-34
AJ508675_1(AJ508675|pid:none) Ciona intestinalis mRNA for Rif pr... 148 3e-34
CR380957_354(CR380957|pid:none) Candida glabrata strain CBS138 c... 147 6e-34
CR932490_1(CR932490|pid:none) Paramecium tetraurelia, Small GTPa... 147 8e-34
BC134407_1(BC134407|pid:none) Mus musculus ras homolog gene fami... 147 8e-34
AB051828_1(AB051828|pid:none) Xenopus laevis xG28K mRNA for GTP-... 146 1e-33
CR380956_232(CR380956|pid:none) Candida glabrata strain CBS138 c... 146 1e-33
EU780128_1(EU780128|pid:none) Clonorchis sinensis clone ACP-2U-1... 145 2e-33
AF458975_2(AF458975|pid:none) Saccharomyces cerevisiae strain YJ... 145 2e-33
(P06781) RecName: Full=GTP-binding protein RHO2; Flags: Precurso... 145 2e-33
BC082361_1(BC082361|pid:none) Xenopus laevis cDNA clone MGC:8156... 145 2e-33
BX842641_8(BX842641|pid:none) Neurospora crassa DNA linkage grou... 145 2e-33
AJ720012_1(AJ720012|pid:none) Gallus gallus mRNA for hypothetica... 145 3e-33
CR380953_365(CR380953|pid:none) Candida glabrata strain CBS138 c... 144 4e-33
AP007155_508(AP007155|pid:none) Aspergillus oryzae RIB40 genomic... 144 4e-33
EF060240_1(EF060240|pid:none) Magnaporthe grisea GTP-binding pro... 144 4e-33
GN079581_1(GN079581|pid:none) Sequence 184 from Patent WO2009027... 144 4e-33

>(Q23862) RecName: Full=Rho-related protein racE; Flags: Precursor;
&AF310890_2(AF310890|pid:none)
&CS026771_1(CS026771|pid:none)
&U41222_1(U41222|pid:none)
Length = 223

Score = 410 bits (1055), Expect = e-113
Identities = 204/204 (100%), Positives = 204/204 (100%)
Frame = +3

Query: 120 MSEDQGSGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIK 299
MSEDQGSGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIK
Sbjct: 1 MSEDQGSGATRVKLVVVGDGAVGKTCLLICYAQNDFPVDYVPTVFENYTATRKRGNEDIK 60

Query: 300 VHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSIL 479
VHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSIL
Sbjct: 61 VHLWDTAGQEEYDRLRPLSYPGADVVLLCFSTISQSSYEAIRDKWAPEVNHYIPDVPSIL 120

Query: 480 VGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIE 659
VGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIE
Sbjct: 121 VGTKIDLREQQHPDPNSGKFEPITADMGISMQKQIKAKKYLEVSAKTRQGLEEVFSAAIE 180

Query: 660 IVLESRGMDKKSQDGSSSASGVPS 731
IVLESRGMDKKSQDGSSSASGVPS
Sbjct: 181 IVLESRGMDKKSQDGSSSASGVPS 204

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,398,993,206
Number of extensions: 29328829
Number of successful extensions: 82244
Number of sequences better than 10.0: 3355
Number of HSP's gapped: 78840
Number of HSP's successfully gapped: 3370
Length of query: 340
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 211
Effective length of database: 633,664,753
Effective search space: 133703262883
Effective search space used: 133703262883
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.77 gvh: 0.44 alm: 0.33 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.50 vac: 0.00 rnp: 0.00
act: 0.00 caa: 1.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

28.0 %: nuclear
20.0 %: plasma membrane
20.0 %: cytoplasmic
12.0 %: extracellular, including cell wall
8.0 %: Golgi
8.0 %: vesicles of secretory system
4.0 %: endoplasmic reticulum

>> prediction for Contig-U14470-1 is nuc

VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 1
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 17
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0