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Dicty_cDB
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14463-1
Contig ID Contig-U14463-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Contig-U14463-1Q.Seq.d
AGCGTAAATTTAAATAATTTAAATACAATTGGTGATGATATTGAAGAAAA
TGATGGTGGTAAAAGTATCGGTAGTAGTGTTTCAGGTTCACCAAGATCAT
CTATTGATATTCCATTCGATTTATCAATTGAACCTGGTGGTATAACTTCA
CCAAAATTAAATAGTTGTAATAATAGTAATAATAATAATAGTAATGGAAG
AATCATTGAAATTCCAAAATTAAATAATAATGTAGAATTTGAAAATAAAA
AAGAATCAACAAATACAACATCATTAGATGATAATTTCATTTCAGCAACA
ACCCCAAGAAATTATAATTCATCAACAAATAAAAGTTTCTTTTCAAAAGA
TGGTTTCTTTTTTAAATGGTGGATTGTATCATCAACGATTATTTTAGGTC
CATTTGGTTATGCAATTTTTCATATTTTCCTTTTTGCTTTCTATAGTGTA
ACAAATAATATTTTCCAAGTTATTCTTATCGTATCTTTTCAAATCATTGT
ATTTATATATAAATTAATCTTTAGATTATCATTTCATAGAATGAGAAGAA
ATTTACCAAATATCCCATTAAGAGTATTTCAAGATGGTAGAGTTTTATTT
TTATTTTGGTTAGAATTAAGTTCACATTGTTTCTTTTCTATGGTATTTCC
ACATGTCGGAGCATGGTATATGATTATTATTTATTTGGCGTTGGAAGCTG
TGACATTGACATTACAAATATTTGTTGATACTATTGCATTTAGAAATTGG
TGTATTAGAACATTTGAAAAGTTGTATGAACATTTTTATTTGATAAAATA
TGAAGGTGTTTTAATGTACAATATTTTAGGTCAAAATGGTGATTTGGATA
GAACAGTATCATTGGAGATCTTTTTCTTTAATACTGTTGCAAGAGCGTTA
TCGGGTTTCGCATATATTGTATTCTCATTAACAATTTATTATGGACCAAA
TCAAGAATACTACCCAACTATTAAATCATTATCAGAATTTAATTATTTTC
TAACATTATTATATGCTGCTGCTTCATTAACAACCGCTTTAATTCATATG
TACATTTTTAAAAGAATACTTAAACATGTTTATAAAATTAATTTAATTAA
AAGAGGTATTCAAGTTTGGGGAAGAAAACCTGATGTTGCTTTCTTTTTCA
TTACAAATTGTTTCATATTGCCACTTGTTGTATTATTACAACAAAATAAT
GCTGTTAGTTTTTTAATTTCAAATTTAAATAAATAAATAAATAAAAAAAA
AAAATAAAAAAAAATATGTAT
Gap no gap
Contig length 1271
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 5717065
End point 5718336
Strand (PLUS/MINUS) PLUS
Number of clones 2
Number of EST 2
Link to clone list U14463
List of clone(s) 

est1=CHQ387E,1,1237
est2=SSJ793E,872,1272
Translated Amino Acid sequence 
SVNLNNLNTIGDDIEENDGGKSIGSSVSGSPRSSIDIPFDLSIEPGGITSPKLNSCNNSN
NNNSNGRIIEIPKLNNNVEFENKKESTNTTSLDDNFISATTPRNYNSSTNKSFFSKDGFF
FKWWIVSSTIILGPFGYAIFHIFLFAFYSVTNNIFQVILIVSFQIIVFIYKLIFRLSFHR
MRRNLPNIPLRVFQDGRVLFLFWLELSSHCFFSMVFPHVGAWYMIIIYLALEAVTLTLQI
FVDTIAFRNWCIRTFEKLYEHFYLIKYEGVLMYNILGQNGDLDRTVSLEIFFFNTVARAL
SGFAYIVFSLTIYYGPNQEYYPTIKSLSEFNYFLTLLYAAASLTTALIHMYIFKRILKHV
YKINLIKRGIQVWGRKPDVAFFFITNCFILPLVVLLQQNNAVSFLISNLNK*inkkkk*k
kic
Translated Amino Acid sequence (All Frames) 
Frame A:
SVNLNNLNTIGDDIEENDGGKSIGSSVSGSPRSSIDIPFDLSIEPGGITSPKLNSCNNSN
NNNSNGRIIEIPKLNNNVEFENKKESTNTTSLDDNFISATTPRNYNSSTNKSFFSKDGFF
FKWWIVSSTIILGPFGYAIFHIFLFAFYSVTNNIFQVILIVSFQIIVFIYKLIFRLSFHR
MRRNLPNIPLRVFQDGRVLFLFWLELSSHCFFSMVFPHVGAWYMIIIYLALEAVTLTLQI
FVDTIAFRNWCIRTFEKLYEHFYLIKYEGVLMYNILGQNGDLDRTVSLEIFFFNTVARAL
SGFAYIVFSLTIYYGPNQEYYPTIKSLSEFNYFLTLLYAAASLTTALIHMYIFKRILKHV
YKINLIKRGIQVWGRKPDVAFFFITNCFILPLVVLLQQNNAVSFLISNLNK*inkkkk*k
kic


Frame B:
a*i*ii*iqlvmilkkmmvvkvsvvvfqvhqdhllifhsiyqlnlvv*lhqn*ivviivi
iiivmeeslkfqn*iim*nlkikknqqiqhh*miisfqqqpqeiiihqqikvsfqkmvsf
lngglyhqrlf*vhlvmqffifsfllsiv*qiifsklflsylfkslylyin*sldyhfie
*eeiyqish*eyfkmvefyfyfg*n*vhivsflwyfhmsehgi*llfiwrwkl*h*hyky
llillhleigvlehlkscmnifi**nmkvf*ctif*vkmviwieqyhwrsfslillqery
rvshilysh*qfimdqiknttqllnhyqnliif*hyymlllh*qpl*fictflkeylnmf
ikli*lkevfkfgeenlmllsfslqivsychllyyynkimllvf*fqi*ink*ikkknkk
kyv


Frame C:
rkfk*fkynw**y*rk*ww*kyr**cfrftkiiy*ysirfin*twwynftkik*l*****
****wknh*nskik**cri*k*krinkyniir**fhfsnnpkkl*fink*kflfkrwflf
*mvdciindyfrsiwlcnfsyfpfcfl*cnk*yfpsysyrifsnhciyi*inl*iiis*n
ekkftkypiksisrw*sfifilvrikftlflfygistcrsmvydyylfgvgscdiditni
c*yyci*klvy*ni*kvv*tflfdki*rcfnvqyfrskw*fg*nsiigdlfl*yccksvi
gfriycilinnllwtksrilpny*iiiri*lfsniiicccfinnrfnsyvhf*knt*tcl
*n*fn*krysslgkkt*ccflfhyklfhiatcciittk*cc*ffnfkfk*ink*kkkikk
nmy
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14463-1 (Contig-U14463-1Q)
/CSM_Contig/Contig-U14463-1Q.Seq.d
         (1271 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Conti...  1974  0.0
Contig-U13166-1 (Contig-U13166-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U02303-1 (Contig-U02303-1Q) /CSM_Contig/Conti...    48  2e-05
Contig-U14568-1 (Contig-U14568-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09770-1 (Contig-U09770-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09683-1 (Contig-U09683-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U09353-1 (Contig-U09353-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14295-1 (Contig-U14295-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12500-1 (Contig-U12500-1Q) /CSM_Contig/Conti...    38  0.023
Contig-U12463-1 (Contig-U12463-1Q) /CSM_Contig/Conti...    38  0.023

>Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Contig-U14463-1Q.Seq.d
          Length = 1271

 Score = 1974 bits (996), Expect = 0.0
 Identities = 996/996 (100%)
 Strand = Plus / Plus

                                                                        
Query: 196  ggaagaatcattgaaattccaaaattaaataataatgtagaatttgaaaataaaaaagaa 255
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196  ggaagaatcattgaaattccaaaattaaataataatgtagaatttgaaaataaaaaagaa 255

                                                                        
Query: 256  tcaacaaatacaacatcattagatgataatttcatttcagcaacaaccccaagaaattat 315
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256  tcaacaaatacaacatcattagatgataatttcatttcagcaacaaccccaagaaattat 315

                                                                        
Query: 316  aattcatcaacaaataaaagtttcttttcaaaagatggtttcttttttaaatggtggatt 375
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316  aattcatcaacaaataaaagtttcttttcaaaagatggtttcttttttaaatggtggatt 375

                                                                        
Query: 376  gtatcatcaacgattattttaggtccatttggttatgcaatttttcatattttccttttt 435
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376  gtatcatcaacgattattttaggtccatttggttatgcaatttttcatattttccttttt 435

                                                                        
Query: 436  gctttctatagtgtaacaaataatattttccaagttattcttatcgtatcttttcaaatc 495
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436  gctttctatagtgtaacaaataatattttccaagttattcttatcgtatcttttcaaatc 495

                                                                        
Query: 496  attgtatttatatataaattaatctttagattatcatttcatagaatgagaagaaattta 555
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 496  attgtatttatatataaattaatctttagattatcatttcatagaatgagaagaaattta 555

                                                                        
Query: 556  ccaaatatcccattaagagtatttcaagatggtagagttttatttttattttggttagaa 615
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556  ccaaatatcccattaagagtatttcaagatggtagagttttatttttattttggttagaa 615

                                                                        
Query: 616  ttaagttcacattgtttcttttctatggtatttccacatgtcggagcatggtatatgatt 675
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616  ttaagttcacattgtttcttttctatggtatttccacatgtcggagcatggtatatgatt 675

                                                                        
Query: 676  attatttatttggcgttggaagctgtgacattgacattacaaatatttgttgatactatt 735
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676  attatttatttggcgttggaagctgtgacattgacattacaaatatttgttgatactatt 735

                                                                        
Query: 736  gcatttagaaattggtgtattagaacatttgaaaagttgtatgaacatttttatttgata 795
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736  gcatttagaaattggtgtattagaacatttgaaaagttgtatgaacatttttatttgata 795

                                                                        
Query: 796  aaatatgaaggtgttttaatgtacaatattttaggtcaaaatggtgatttggatagaaca 855
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 796  aaatatgaaggtgttttaatgtacaatattttaggtcaaaatggtgatttggatagaaca 855

                                                                        
Query: 856  gtatcattggagatctttttctttaatactgttgcaagagcgttatcgggtttcgcatat 915
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 856  gtatcattggagatctttttctttaatactgttgcaagagcgttatcgggtttcgcatat 915

                                                                        
Query: 916  attgtattctcattaacaatttattatggaccaaatcaagaatactacccaactattaaa 975
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 916  attgtattctcattaacaatttattatggaccaaatcaagaatactacccaactattaaa 975

                                                                        
Query: 976  tcattatcagaatttaattattttctaacattattatatgctgctgcttcattaacaacc 1035
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 976  tcattatcagaatttaattattttctaacattattatatgctgctgcttcattaacaacc 1035

                                                                        
Query: 1036 gctttaattcatatgtacatttttaaaagaatacttaaacatgtttataaaattaattta 1095
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1036 gctttaattcatatgtacatttttaaaagaatacttaaacatgtttataaaattaattta 1095

                                                                        
Query: 1096 attaaaagaggtattcaagtttggggaagaaaacctgatgttgctttctttttcattaca 1155
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1096 attaaaagaggtattcaagtttggggaagaaaacctgatgttgctttctttttcattaca 1155

                                                
Query: 1156 aattgtttcatattgccacttgttgtattattacaa 1191
            ||||||||||||||||||||||||||||||||||||
Sbjct: 1156 aattgtttcatattgccacttgttgtattattacaa 1191


 Score =  305 bits (154), Expect = 6e-83
 Identities = 154/154 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcgtaaatttaaataatttaaatacaattggtgatgatattgaagaaaatgatggtggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agcgtaaatttaaataatttaaatacaattggtgatgatattgaagaaaatgatggtggt 60

                                                                       
Query: 61  aaaagtatcggtagtagtgtttcaggttcaccaagatcatctattgatattccattcgat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  aaaagtatcggtagtagtgtttcaggttcaccaagatcatctattgatattccattcgat 120

                                             
Query: 121 ttatcaattgaacctggtggtataacttcaccaa 154
           ||||||||||||||||||||||||||||||||||
Sbjct: 121 ttatcaattgaacctggtggtataacttcaccaa 154


>Contig-U13166-1 (Contig-U13166-1Q) /CSM_Contig/Contig-U13166-1Q.Seq.d
          Length = 530

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 27  aattggtgatgatattgaagaaaatgatggtg 58
           |||| ||||||||||||||||| |||||||||
Sbjct: 488 aattagtgatgatattgaagaatatgatggtg 519


 Score = 30.2 bits (15), Expect = 5.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 497 ttgtatttatatataaatt 515
           |||||||||||| ||||||
Sbjct: 318 ttgtatttatatttaaatt 300


>Contig-U02303-1 (Contig-U02303-1Q) /CSM_Contig/Contig-U02303-1Q.Seq.d
          Length = 597

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                           
Query: 27  aattggtgatgatattgaagaaaatgatggtg 58
           |||| ||||||||||||||||| |||||||||
Sbjct: 472 aattagtgatgatattgaagaatatgatggtg 503


 Score = 30.2 bits (15), Expect = 5.6
 Identities = 18/19 (94%)
 Strand = Plus / Minus

                              
Query: 497 ttgtatttatatataaatt 515
           |||||||||||| ||||||
Sbjct: 302 ttgtatttatatttaaatt 284


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 37,556
Number of Sequences: 6905
Number of extensions: 37556
Number of successful extensions: 5727
Number of sequences better than 10.0: 915
length of query: 1271
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1255
effective length of database: 5,564,391
effective search space: 6983310705
effective search space used: 6983310705
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.23
Homology vs DNA 
Query= Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Contig-U14463-1Q.Seq.d
         (1271 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ385433) Dictyostelium discoideum cDNA clone:ddc54n21, 3' ...  1407   0.0    1
(BJ370666) Dictyostelium discoideum cDNA clone:ddc54n21, 5' ...   563   0.0    2
(C91189) Dictyostelium discoideum slug cDNA, clone SSJ793.        620   e-173  1
(AL844509) Plasmodium falciparum chromosome 13.                    40   5e-06  12
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    40   1e-05  16
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    48   2e-04  15
(AE014832) Plasmodium falciparum 3D7 chromosome 10 section 4...    38   3e-04  13
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   6e-04  13
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    32   0.001  17
(AE014829) Plasmodium falciparum 3D7 chromosome 10 section 1...    34   0.002  16
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    32   0.002  16
(AM432522) Vitis vinifera contig VV78X027253.24, whole genom...    40   0.003  5
(AE014841) Plasmodium falciparum 3D7 chromosome 11 section 6...    34   0.004  14
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    38   0.005  12
(CZ531644) SRAA-aac74b01.g1 Strongyloides ratti whole genome...    54   0.005  2
(AL035475) Plasmodium falciparum MAL4P2.                           34   0.005  14
(AC116982) Dictyostelium discoideum chromosome 2 map 3622643...    34   0.005  13
(AF083031) Guillardia theta nucleomorph chromosome 3, comple...    44   0.006  12
(AL844507) Plasmodium falciparum chromosome 8.                     38   0.009  16
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    32   0.010  14
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    36   0.011  14
(AL034559) Plasmodium falciparum MAL3P7.                           36   0.013  13
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    38   0.014  10
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **...    36   0.016  11
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    36   0.018  12
(EI459629) PV_GBa0062J15.r PV_GBa Phaseolus vulgaris genomic...    44   0.018  2
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    40   0.020  15
(AE014846) Plasmodium falciparum 3D7 chromosome 12, section ...    34   0.021  15
(AL031745) Plasmodium falciparum DNA from MAL1P2.                  36   0.023  13
(BX640460) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   0.023  8
(AL928692) Zebrafish DNA sequence from clone CH211-208D15 in...    34   0.025  13
(CT867969) Human DNA sequence from clone XX-HCC1954_9L18.          42   0.026  8
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.027  14
(AL929351) Plasmodium falciparum strain 3D7, chromosome 5, s...    40   0.027  14
(AC230055) Bos taurus clone CH240-5D10, WORKING DRAFT SEQUEN...    34   0.029  12
(CR759864) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    34   0.029  9
(AC110174) Mus musculus chromosome 3, clone RP23-293K21, com...    38   0.034  8
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    40   0.041  17
(CU459182) Zebrafish DNA sequence from clone CH211-108I17 in...    42   0.045  6
(AC171753) Atelerix albiventris clone LB4-182K23, WORKING DR...    38   0.045  8
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   0.046  16
(CS448327) Sequence 11 from Patent WO2006117381.                   52   0.053  1
(EY336089) CAWY7463.rev CAWY Helobdella robusta Subtracted E...    52   0.053  1
(AC107303) Homo sapiens chromosome 3 clone RP11-595I22, WORK...    40   0.062  12
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.078  11
(AE014834) Plasmodium falciparum 3D7 chromosome 10 section 6...    38   0.079  14
(AE013218) Buchnera aphidicola str. Sg (Schizaphis graminum)...    34   0.096  19
(AL591407) Human DNA sequence *** SEQUENCING CANCELLED *** f...    40   0.097  8
(AE014852) Plasmodium falciparum 3D7 chromosome 12, section ...    36   0.11   14
(AM434020) Vitis vinifera contig VV78X255354.6, whole genome...    38   0.11   4
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    36   0.11   17
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    36   0.11   13
(AP001688) Homo sapiens genomic DNA, chromosome 21q, section...    36   0.12   9
(AC117076) Dictyostelium discoideum chromosome 2 map 3323568...    32   0.12   11
(AC116960) Dictyostelium discoideum chromosome 2 map complem...    32   0.12   13
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    32   0.13   17
(AC007632) Homo sapiens clone R529C19B from chromosome 18, c...    36   0.15   9
(AC217585) Populus trichocarpa clone POP021-H02, complete se...    36   0.16   8
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    36   0.16   9
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   0.17   12
(AL035477) Plasmodium falciparum MAL4P4.                           34   0.19   13
(L77117) Methanocaldococcus jannaschii DSM 2661, complete ge...    40   0.19   20
(BH160455) ENTSO94TR Entamoeba histolytica Sheared DNA Entam...    50   0.21   1
(EK023694) 1092955349027 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.21   1
(DY561843) AGENCOURT_69587393 NICHD_XGC_Emb10 Xenopus laevis...    50   0.21   1
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       36   0.21   13
(BD061520) Genome DNA of symbiotic bacteria of aphid.              38   0.21   20
(AR409405) Sequence 1 from patent US 6632935.                      38   0.21   20
(BA000003) Buchnera aphidicola str. APS (Acyrthosiphon pisum...    38   0.21   20
(AL356956) Human DNA sequence from clone RP11-538A16 on chro...    40   0.22   8
(AM430613) Vitis vinifera contig VV78X042878.3, whole genome...    36   0.22   3
(DX573097) Phaseolus-Bat-7_02_C18.F Phaseolus-Bat-7 Phaseolu...    34   0.23   3
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    32   0.24   17
(AF007261) Reclinomonas americana mitochondrion, complete ge...    38   0.25   7
(AE014851) Plasmodium falciparum 3D7 chromosome 12, section ...    38   0.28   12
(CU640448) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   0.30   9
(X02354) Leishmania tarentolae mitochondrial 12S ribosomal R...    32   0.32   4
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s...    46   0.32   15
(AC178843) Strongylocentrotus purpuratus clone R3-26D2, WORK...    34   0.33   8
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.34   15
(AM441435) Vitis vinifera contig VV78X152614.63, whole genom...    36   0.36   6
(BX813336) Mouse DNA sequence from clone RP23-207B5 on chrom...    36   0.37   8
(AF165818) Guillardia theta nucleomorph chromosome 1, comple...    38   0.37   10
(DN914085) MCF7RNAL18B10TR Human MCF7 breast cancer cell lin...    34   0.38   3
(AC004157) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.40   10
(DQ642846) Plasmodium falciparum HB3 apicoplast, complete ge...    34   0.41   7
(CP000551) Prochlorococcus marinus str. AS9601, complete gen...    42   0.41   18
(AM452283) Vitis vinifera contig VV78X185106.5, whole genome...    38   0.42   2
(AM486684) Vitis vinifera contig VV78X090530.7, whole genome...    42   0.43   3
(BX908731) Zebrafish DNA sequence from clone DKEY-19F23 in l...    36   0.43   8
(AC114263) Dictyostelium discoideum chromosome 2 map 215673-...    36   0.44   11
(AC166223) Sorex araneus clone SA_Ba-129G24, WORKING DRAFT S...    38   0.44   5
(AC179204) Strongylocentrotus purpuratus clone R3-4019M1, WO...    38   0.46   2
(AC006278) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.48   11
(BX530089) Zebrafish DNA sequence from clone CH211-129M12 in...    34   0.48   9
(AC005140) Plasmodium falciparum chromosome 12 clone 3D7, **...    38   0.53   12
(AC004153) Plasmodium falciparum chromosome 12 clone 3D7, **...    34   0.54   11
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    32   0.54   14
(BF595021) su74d06.y1 Gm-c1055 Glycine max cDNA clone GENOME...    42   0.54   2
(AC215364) Solanum lycopersicum chromosome 2 clone C02HBa003...    40   0.55   6

>(BJ385433) Dictyostelium discoideum cDNA clone:ddc54n21, 3' end,
            single read.
          Length = 755

 Score = 1407 bits (710), Expect = 0.0
 Identities = 710/710 (100%)
 Strand = Plus / Minus


Query: 483  atcttttcaaatcattgtatttatatataaattaatctttagattatcatttcatagaat 542
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755  atcttttcaaatcattgtatttatatataaattaatctttagattatcatttcatagaat 696


Query: 543  gagaagaaatttaccaaatatcccattaagagtatttcaagatggtagagttttattttt 602
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695  gagaagaaatttaccaaatatcccattaagagtatttcaagatggtagagttttattttt 636


Query: 603  attttggttagaattaagttcacattgtttcttttctatggtatttccacatgtcggagc 662
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 635  attttggttagaattaagttcacattgtttcttttctatggtatttccacatgtcggagc 576


Query: 663  atggtatatgattattatttatttggcgttggaagctgtgacattgacattacaaatatt 722
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575  atggtatatgattattatttatttggcgttggaagctgtgacattgacattacaaatatt 516


Query: 723  tgttgatactattgcatttagaaattggtgtattagaacatttgaaaagttgtatgaaca 782
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515  tgttgatactattgcatttagaaattggtgtattagaacatttgaaaagttgtatgaaca 456


Query: 783  tttttatttgataaaatatgaaggtgttttaatgtacaatattttaggtcaaaatggtga 842
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455  tttttatttgataaaatatgaaggtgttttaatgtacaatattttaggtcaaaatggtga 396


Query: 843  tttggatagaacagtatcattggagatctttttctttaatactgttgcaagagcgttatc 902
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395  tttggatagaacagtatcattggagatctttttctttaatactgttgcaagagcgttatc 336


Query: 903  gggtttcgcatatattgtattctcattaacaatttattatggaccaaatcaagaatacta 962
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335  gggtttcgcatatattgtattctcattaacaatttattatggaccaaatcaagaatacta 276


Query: 963  cccaactattaaatcattatcagaatttaattattttctaacattattatatgctgctgc 1022
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275  cccaactattaaatcattatcagaatttaattattttctaacattattatatgctgctgc 216


Query: 1023 ttcattaacaaccgctttaattcatatgtacatttttaaaagaatacttaaacatgttta 1082
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215  ttcattaacaaccgctttaattcatatgtacatttttaaaagaatacttaaacatgttta 156


Query: 1083 taaaattaatttaattaaaagaggtattcaagtttggggaagaaaacctgatgttgcttt 1142
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155  taaaattaatttaattaaaagaggtattcaagtttggggaagaaaacctgatgttgcttt 96


Query: 1143 ctttttcattacaaattgtttcatattgccacttgttgtattattacaac 1192
            ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95   ctttttcattacaaattgtttcatattgccacttgttgtattattacaac 46

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,723,355,550
Number of extensions: 120169816
Number of successful extensions: 11928562
Number of sequences better than 10.0: 575
Length of query: 1271
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1247
Effective length of database: 97,308,875,965
Effective search space: 121344168328355
Effective search space used: 121344168328355
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.11
Homology vs Protein 
Query= Contig-U14463-1 (Contig-U14463-1Q) /CSM_Contig/Contig-U14463-1Q.Seq.d
         (1271 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR940348_368(CR940348|pid:none) Theileria annulata strain Ankara...    40   0.14
(P24896) RecName: Full=NADH-ubiquinone oxidoreductase chain 5;  ...    37   1.2
EU407789_12(EU407789|pid:none) Caenorhabditis briggsae strain ED...    37   1.2
CR382137_166(CR382137|pid:none) Debaryomyces hansenii strain CBS...    37   1.5
FN357422_47(FN357422|pid:none) Schistosoma mansoni genome sequen...    37   2.0
EU407798_12(EU407798|pid:none) Caenorhabditis briggsae strain JU...    36   2.6
EU407788_12(EU407788|pid:none) Caenorhabditis briggsae strain ED...    36   2.6
EU407799_12(EU407799|pid:none) Caenorhabditis briggsae strain JU...    36   2.6
EU407781_12(EU407781|pid:none) Caenorhabditis briggsae strain BW...    36   2.6
EU407791_12(EU407791|pid:none) Caenorhabditis briggsae strain EG...    36   2.6
EU407797_12(EU407797|pid:none) Caenorhabditis briggsae strain JU...    36   2.6
EU407784_12(EU407784|pid:none) Caenorhabditis briggsae strain ED...    36   2.6
EU407802_12(EU407802|pid:none) Caenorhabditis briggsae strain PB...    36   2.6
AY073364_1(AY073364|pid:none) Mus musculus olfactory receptor MO...    36   2.6
EU407792_12(EU407792|pid:none) Caenorhabditis briggsae strain EG...    36   2.6
EU407783_12(EU407783|pid:none) Caenorhabditis briggsae strain ED...    36   2.6
AF038608_14(AF038608|pid:none) Caenorhabditis elegans cosmid C09...    36   3.4
CR548612_244(CR548612|pid:none) Paramecium tetraurelia macronucl...    35   5.8
AF136181_1(AF136181|pid:none) Kluyveromyces lactis potassium tra...    35   5.8
CR382125_665(CR382125|pid:none) Kluyveromyces lactis strain NRRL...    35   5.8
BX950229_1110(BX950229|pid:none) Methanococcus maripaludis strai...    34   9.8
AK176422_1(AK176422|pid:none) Arabidopsis thaliana mRNA, complet...    34   9.8
AC004122_10(AC004122|pid:none) Arabidopsis thaliana chromosome I...    34   9.8
AY086862_1(AY086862|pid:none) Arabidopsis thaliana clone 28669 m...    34   9.8
EU407804_12(EU407804|pid:none) Caenorhabditis elegans strain JU2...    34   9.8

>CR940348_368(CR940348|pid:none) Theileria annulata strain Ankara
           isolate clone C9, *** SEQUENCING IN PROGRESS ***.
          Length = 1168

 Score = 40.4 bits (93), Expect = 0.14
 Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 22/191 (11%)
 Frame = +1

Query: 367 WWIVSSTIILGPFGYAIFH-----IFLFAFYSVTNNIFQVILIVSFQIIVFIYKLIFRLS 531
           ++I+  T+IL   G  + +     I    ++S T     +++I+    + FIY  IF L
Sbjct: 57  YYILQITVILTLLGSVLINFENNFILNIFYFSYT----MLLVIIHLSRVKFIYSFIFGLV 112

Query: 532 FHRMRRNLPNIPLRVFQDGRVLFLFWLELSSHCFFSMVFPHVGAWYMIIIYLALEAVTLT 711
           F                   VL  F LEL +  F +    HVG  + +II L    +
Sbjct: 113 F------------------LVLDYFLLELKTDNFANYFILHVGVLHFLIIALVKTRINSA 154

Query: 712 LQIFVDTIAFRNWCI---RTFEKLYEHFYLIKYEGVLMYNILG--------------QNG 840
             I + TI     CI    T   ++   Y  KY   L++ +LG              ++G
Sbjct: 155 FIITLHTI-----CIGYSMTLIIIHSCSYYSKYNSGLVWFVLGLFTARSLPQLLWSFRDG 209

Query: 841 DLDRTVSLEIF 873
           DLDR + ++ F
Sbjct: 210 DLDREIQVQSF 220

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,624,359,741
Number of extensions: 29086591
Number of successful extensions: 73826
Number of sequences better than 10.0: 25
Number of HSP's gapped: 73722
Number of HSP's successfully gapped: 25
Length of query: 423
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 292
Effective length of database: 627,191,635
Effective search space: 183139957420
Effective search space used: 183139957420
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.72  gvh: 0.36  alm: 0.20  top: 0.43  tms: 0.40  mit: 0.15  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 44.0 %: plasma membrane
	 36.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system
	  4.0 %: nuclear

>> prediction for Contig-U14463-1 is pla
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 1
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0