Contig-U14442-1 |
Contig ID |
Contig-U14442-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
791 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4322333 |
End point |
4321579 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
6 |
Number of EST |
6 |
Link to clone list |
U14442 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.22 |
Homology vs DNA |
Query= Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Contig-U14442-1Q.Seq.d (791 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C84099) Dictyostelium discoideum slug cDNA, clone SSC775. 1063 0.0 1 (AU060747) Dictyostelium discoideum slug cDNA, clone SLB339. 989 0.0 1 (AY191015) Dictyostelium discoideum autophagy protein 8 (apg... 569 0.0 3 (AU267548) Dictyostelium discoideum vegetative cDNA clone:VS... 507 e-139 1 (AU075059) Dictyostelium discoideum slug cDNA, clone SSM844. 468 e-127 1 (AU263382) Dictyostelium discoideum vegetative cDNA clone:VS... 466 e-127 1 (AU270007) Dictyostelium discoideum vegetative cDNA clone:VS... 345 2e-90 1 (EL814842) CBWN1229.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 174 4e-83 2 (EL814843) CBWN1229.g1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 174 4e-83 2 (BJ369724) Dictyostelium discoideum cDNA clone:ddc51d18, 5' ... 190 1e-47 2 (DY895673) CeleSEQ15557 Cunninghamella elegans pBluescript (... 62 1e-15 2 (AI778150) EST259029 tomato susceptible, Cornell Solanum lyc... 74 2e-15 2 (AI773758) EST254858 tomato resistant, Cornell Solanum lycop... 74 2e-15 2 (DB698049) Solanum lycopersicum cDNA, clone: LEFL1062CH02, 5... 74 3e-15 2 (AW222950) EST299761 tomato fruit red ripe, TAMU Solanum lyc... 74 3e-15 2 (DB716590) Solanum lycopersicum cDNA, clone: LEFL2023I02, 5'... 74 3e-15 2 (DB704344) Solanum lycopersicum cDNA, clone: LEFL1085AH10, 5... 74 3e-15 2 (AI489093) EST247432 tomato ovary, TAMU Solanum lycopersicum... 74 1e-14 2 (ES754263) C20L_41_G06_E002.g1 USDA-Tifton Peanut Library C2... 72 1e-13 2 (ES754381) C20L_43_F09_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2 (EC819766) SME00006936 esmbsro2 Sawyeria marylandensis cDNA,... 74 2e-13 3 (ES752464) C20L_12_F10_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2 (ES707591) C20R7_5_A06_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2 (DW129134) CLSX5926.b1_L17.ab1 CLS(XYZ) lettuce sativa Lactu... 50 3e-13 3 (DW129314) CLSX6090.b1_D12.ab1 CLS(XYZ) lettuce sativa Lactu... 50 3e-13 3 (DY977129) CLSS10888.b1_P09.ab1 CLS(LMS) lettuce sativa Lact... 50 3e-13 3 (DR455400) CM033H03 Cotton Lambda Zap Express Library Gossyp... 52 4e-13 3 (DW505461) GH_TMIRS_094_C01_F Cotton Normalized Library dT p... 52 6e-13 3 (DV122168) CV03031A2B10.f1 CV03-normalized library Euphorbia... 58 9e-13 2 (EX171855) H05_F-23_045 Cotton 1-14 day post anthesis Lambda... 50 3e-12 3 (AW255445) ML467 peppermint glandular trichome Mentha x pipe... 54 4e-11 2 (DW170881) CLVZ1905.b1_B22.ab1 CLV(XYZ) lettuce virosa Lactu... 50 7e-11 3 (DW164343) CLVY2874.b1_D23.ab1 CLV(XYZ) lettuce virosa Lactu... 50 7e-11 3 (CF924213) DD016D06.ab1 Codonopsis lanceolata cDNA library C... 74 1e-10 2 (ES761669) ISBL_11_F03_E003.g1 USDA-Tifton Peanut Library IS... 80 1e-10 1 (DN982555) SV6_49A06_SV6_49_037 SV6 Solanum chacoense cDNA, ... 54 2e-10 2 (EH708386) CCIS7683.b1_E01.ab1 CCI(LMS) chicory Cichorium in... 56 3e-09 2 (EH701274) CCIS13379.b1_F10.ab1 CCI(LMS) chicory Cichorium i... 50 4e-09 3 (EH704595) CCIS3481.b1_A07.ab1 CCI(LMS) chicory Cichorium in... 50 4e-09 3 (BU547998) GM880014A20B03 Gm-r1088 Glycine max cDNA clone Gm... 60 4e-09 3 (AI488831) EST247170 tomato ovary, TAMU Solanum lycopersicum... 74 9e-09 1 (BE462308) EST324572 tomato flower buds 0-3 mm, Cornell Univ... 74 9e-09 1 (AW222900) EST299711 tomato fruit red ripe, TAMU Solanum lyc... 74 9e-09 1 (BP961342) Euphorbia tirucalli mRNA, clone: ETC042A06, 5' end. 50 1e-08 2 (BP961344) Euphorbia tirucalli mRNA, clone: ETC020E06, 5' end. 50 1e-08 2 (BP961343) Euphorbia tirucalli mRNA, clone: ETC103C07, 5' end. 50 1e-08 2 (DN977925) SV5_46E12_SV5_46_087 SV5 Solanum chacoense cDNA, ... 50 1e-08 2 (CT577157) Pinus pinaster bud EST. 56 1e-08 3 (CT577353) Pinus pinaster bud EST. 56 1e-08 3 (BX677559) Pinus pinaster root EST, clone RN41B12. 56 2e-08 3 (BX784212) Pinus pinaster xylem EST, clone 130G07 similar to... 56 2e-08 3 (BI432772) EST535533 P. infestans-challenged potato leaf, co... 50 3e-08 2 (CK720007) 20343 Swollen Stolon Solanum tuberosum cDNA, mRNA... 50 3e-08 2 (DW515450) GH_TMIRS_191_F12_F Cotton Normalized Library dT p... 50 3e-08 3 (ES708814) C20R7_24_F08_E002.g1 USDA-Tifton Peanut Library C... 72 3e-08 1 (DV122303) CV03031B1F06.f1 CV03-normalized library Euphorbia... 58 4e-08 2 (DW496426) GH_TMIRS_005_H08_F Cotton Normalized Library dT p... 50 5e-08 3 (DW519723) GH_TMIRS_233_F11_F Cotton Normalized Library dT p... 50 5e-08 3 (ES835782) UFL_012_81 Cotton fiber 0-10 day post anthesis Go... 50 5e-08 3 (DW515892) GH_TMIRS_196_A10_F Cotton Normalized Library dT p... 50 5e-08 3 (EX165826) B02_P-18_014 Cotton 1-14 day post anthesis Lambda... 50 8e-08 3 (EC819881) SME00008350 esmbsro2 Sawyeria marylandensis cDNA,... 58 8e-08 2 (CV198128) CGF1003960_D07 Seed coat from mid-season walnut e... 58 1e-07 2 (C93223) Dictyostelium discoideum slug cDNA, clone SSM844. 58 1e-07 2 (DV453384) CV02012B2E02.f1 CV02-normalized library Manihot e... 46 2e-07 2 (DB928388) Manihot esculenta mRNA, clone: CAS01_024_C07, 5'end. 46 2e-07 2 (DB928560) Manihot esculenta mRNA, clone: CAS01_024_K08, 5'end. 46 2e-07 2 (DY675077) STRC393JX cold-stressed Fragaria vesca seedlings ... 52 2e-07 3 (AC215407) Solanum lycopersicum chromosome 2 clone C02HBa016... 46 2e-07 4 (AI938666) sb56h11.y1 Gm-c1018 Glycine max cDNA clone GENOME... 60 4e-07 3 (BG790340) sae68b09.y1 Gm-c1064 Glycine max cDNA clone GENOM... 52 5e-07 3 (DN244174) ACAE-aaa24n15.g1 Hydra EST UCI 5 Hydra magnipapil... 66 5e-07 2 (CX547236) gmrtDrNS01_05-A_M13R_G01_003.s4 Water stressed 48... 60 5e-07 3 (CX547064) gmrtDrNS01_02-A_T3_D02_010.s4 Water stressed 48h ... 60 5e-07 3 (FK011651) GLQAG79TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 5e-07 3 (BM092822) sah19d04.y3 Gm-c1086 Glycine max cDNA clone GENOM... 60 6e-07 3 (BM086397) sah39e05.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 60 6e-07 3 (EH701695) CCIS13764.b1_H10.ab1 CCI(LMS) chicory Cichorium i... 48 6e-07 2 (EH055499) THL52h-1114 cDNA library of Tamarix hispida leave... 42 6e-07 3 (BE660973) 324 GmaxSC Glycine max cDNA, mRNA sequence. 60 6e-07 3 (FK012826) GLQAN40TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 6e-07 3 (BU761436) sas71h03.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 60 7e-07 3 (EL511937) CHEZ418.b1_C09.ab1 CHE(XYZ) serpentine sunflower ... 42 7e-07 3 (FK014089) GLQAU46TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3 (FK012827) GLQAN40TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3 (EV273686) GLMBY21TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3 (FG993098) GLLE612TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 60 7e-07 3 (FG995738) GLLEL57TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 60 8e-07 3 (CF921837) gmrhRww24-04-T7_A06_1_048 Soybean root hair subtr... 60 8e-07 3 (FK011652) GLQAG79TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 8e-07 3 (FK014090) GLQAU46TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 8e-07 3 (FK023572) GLRAD52TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 60 1e-06 3 (EH042448) AS1RN23P1A06.ab1 Healthy Roots (RN) Arachis steno... 42 2e-06 3 (DR062354) iq15h03.g1 Cycas ovule (NYBG) Cycas rumphii cDNA ... 48 2e-06 2 (BG275529) NXSI_139_H10_F NXSI (Nsf Xylem Side wood Inclined... 48 2e-06 3 (DR062916) iq23d09.g1 Cycas ovule (NYBG) Cycas rumphii cDNA ... 48 2e-06 2 (EX948466) lj84h04.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemo... 66 2e-06 1 (EX011654) HTAB-aad34c10.b1 Heterorhabditis_bacteriophora_HT... 46 3e-06 3 (ES739119) HTAB-aab24h03.b1 Heterorhabditis_bacteriophora_HT... 46 3e-06 3 (BQ198501) NXLV132_A08_F NXLV (Nsf Xylem Late wood Vertical)... 48 3e-06 3
>(C84099) Dictyostelium discoideum slug cDNA, clone SSC775. Length = 589
Score = 1063 bits (536), Expect = 0.0 Identities = 539/540 (99%) Strand = Plus / Plus
Query: 114 tatacaatttaaaatggttcatgtatcaagctttaaaaacgaccacccactcgacaaaag 173 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 7 tatacaatttaaaatggttcatgtatcaagctctaaaaacgaccacccactcgacaaaag 66
Query: 174 aagagcagtagctgaacgtattagatcaaagtatcttgatagaattccagttattgtaga 233 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 67 aagagcagtagctgaacgtattagatcaaagtatcttgatagaattccagttattgtaga 126
Query: 234 gaaagctccaagatcagatgctccagacatcgataaaaagaaatacttagtaccagctga 293 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 127 gaaagctccaagatcagatgctccagacatcgataaaaagaaatacttagtaccagctga 186
Query: 294 tattactgttggtaaatttgtttatgaaatttgaaagcatatgaccaaagttagtgctga 353 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 187 tattactgttggtaaatttgtttatgaaatttgaaagcatatgaccaaagttagtgctga 246
Query: 354 aaaagccatttatttgtttgttaataatactatcccaccaactgctgctttaatttctca 413 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 247 aaaagccatttatttgtttgttaataatactatcccaccaactgctgctttaatttctca 306
Query: 414 aatttatgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaa 473 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 307 aatttatgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaa 366
Query: 474 tacttttggtagtgatttataacctattataatccatgaatgtattcatgcactctgaga 533 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 367 tacttttggtagtgatttataacctattataatccatgaatgtattcatgcactctgaga 426
Query: 534 gaaagaagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaa 593 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 427 gaaagaagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaa 486
Query: 594 actttaatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 653 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 487 actttaatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 546
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 783,107,252 Number of extensions: 48232272 Number of successful extensions: 3870643 Number of sequences better than 10.0: 1139 Length of query: 791 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 767 Effective length of database: 97,308,875,965 Effective search space: 74635907865155 Effective search space used: 74635907865155 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
2 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
2 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |