Contig-U14442-1
Contig ID Contig-U14442-1
Contig update 2002.12.18
Contig sequence
>Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Contig-U14442-1Q.Seq.d
AATTTCCTAAATACATAGTTTTTAAAACAAACATTTAATATCACTTTTTT
TCTTATAACTTTTATTTTTATTTTTATTTTTATTTTTTTTTTTTAAATTA
TTACTCTATAATATATACAATTTAAAATGGTTCATGTATCAAGCTTTAAA
AACGACCACCCACTCGACAAAAGAAGAGCAGTAGCTGAACGTATTAGATC
AAAGTATCTTGATAGAATTCCAGTTATTGTAGAGAAAGCTCCAAGATCAG
ATGCTCCAGACATCGATAAAAAGAAATACTTAGTACCAGCTGATATTACT
GTTGGTAAATTTGTTTATGAAATTTGAAAGCATATGACCAAAGTTAGTGC
TGAAAAAGCCATTTATTTGTTTGTTAATAATACTATCCCACCAACTGCTG
CTTTAATTTCTCAAATTTATGAACGTTATAAGGATGAAGATGGATTTTTA
TACATTACTTACAGTGGTGAAAATACTTTTGGTAGTGATTTATAACCTAT
TATAATCCATGAATGTATTCATGCACTCTGAGAGAAAGAAGACCACCAAA
TGTATATAGATCCAAACAATAATAGTTTGCCAAATGAATGGAAACTTTAA
TCTCTTTTAGTTATGATACTTACACAATTGTAAATCTTCTTTTTTCAATT
TCTAAAAACAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAANCAAAA
AAAAAAAAACAAAACANAAATAACTTTTCTATTGTTTTTTTTTTTTATAC
ATAAAAAAAAAAAAAAAACAAAAAAAAAAAAAATAAACAAA

Gap no gap
Contig length 791
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4322333
End point 4321579
Strand (PLUS/MINUS) MINUS
Number of clones 6
Number of EST 6
Link to clone list U14442
List of clone(s)

est1=CHO866F,1,224
est2=SSC775Z,108,696
est3=VSH508Z,141,479
est4=SLB339F,143,659
est5=VSJ491Z,229,479
est6=SSM844E,288,792
Translated Amino Acid sequence
nflnt*flkqtfnitfflitfififififff*iitl*YIQFKMVHVSSFKNDHPLDKRRA
VAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEI*khmtkvsaeka
iylfvnntipptaalisqiyerykdedgflyitysgentfgsdl*piiihecihal*eke
dhqmyidpnnnslpnewkl*sllvmiltql*ifffqflktkkkkqkkkk*txkkkktkxk
*lfycffflyikkkkkqkkkk*t


Translated Amino Acid sequence (All Frames)
Frame A:
nflnt*flkqtfnitfflitfififififff*iitl*YIQFKMVHVSSFKNDHPLDKRRA
VAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVGKFVYEI*khmtkvsaeka
iylfvnntipptaalisqiyerykdedgflyitysgentfgsdl*piiihecihal*eke
dhqmyidpnnnslpnewkl*sllvmiltql*ifffqflktkkkkqkkkk*txkkkktkxk
*lfycffflyikkkkkqkkkk*t


Frame B:
is*ihsf*nkhlislffl*llflflflffffklllyniynlkwfmyqalkttthstkeeq
*lnvldqsiliefqll*rklqdqmlqtsikrnt*yqlilllvnlfmkfesi*pklvlkkp
ficlliilshqlll*flkfmnvirmkmdfytlltvvkillvviynll*smnvfmhserkk
ttkci*iqtiivcqmngnfnlf*l*ylhnckssffnf*kqkkknkkkknkqxkkkkqnxn
nfsivfffyt*kkkknkkkknkq


Frame C:
fpkyivfktni*yhffsynfyfyfyfyffflnyysiiyti*ngscikl*krpptrqkkss
s*ty*ikvs**nssycresskircsrhr*keilsts*yycw*icl*nlkaydqs*c*ksh
lfvc**yyptnccfnfsnl*tl*g*rwifihylqw*kyfw**fityynp*mysctlrerr
ppnvyrskq**fak*metlisfsydtytivnllfsisknkkkktkkkkinxqkkknktxi
tfllffffihkkkkktkkkkink


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14442-1 (Contig-U14442-1Q)
/CSM_Contig/Contig-U14442-1Q.Seq.d
(791 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Conti... 1108 0.0
Contig-U06663-1 (Contig-U06663-1Q) /CSM_Contig/Conti... 466 e-131
Contig-U04457-1 (Contig-U04457-1Q) /CSM_Contig/Conti... 40 0.004
Contig-U12212-1 (Contig-U12212-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U04634-1 (Contig-U04634-1Q) /CSM_Contig/Conti... 38 0.014
Contig-U14407-1 (Contig-U14407-1Q) /CSM_Contig/Conti... 36 0.056
Contig-U14193-1 (Contig-U14193-1Q) /CSM_Contig/Conti... 36 0.056
Contig-U14096-1 (Contig-U14096-1Q) /CSM_Contig/Conti... 36 0.056

>Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Contig-U14442-1Q.Seq.d
Length = 791

Score = 1108 bits (559), Expect = 0.0
Identities = 559/559 (100%)
Strand = Plus / Plus


Query: 95 aaattattactctataatatatacaatttaaaatggttcatgtatcaagctttaaaaacg 154
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 95 aaattattactctataatatatacaatttaaaatggttcatgtatcaagctttaaaaacg 154


Query: 155 accacccactcgacaaaagaagagcagtagctgaacgtattagatcaaagtatcttgata 214
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 155 accacccactcgacaaaagaagagcagtagctgaacgtattagatcaaagtatcttgata 214


Query: 215 gaattccagttattgtagagaaagctccaagatcagatgctccagacatcgataaaaaga 274
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 215 gaattccagttattgtagagaaagctccaagatcagatgctccagacatcgataaaaaga 274


Query: 275 aatacttagtaccagctgatattactgttggtaaatttgtttatgaaatttgaaagcata 334
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 aatacttagtaccagctgatattactgttggtaaatttgtttatgaaatttgaaagcata 334


Query: 335 tgaccaaagttagtgctgaaaaagccatttatttgtttgttaataatactatcccaccaa 394
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 335 tgaccaaagttagtgctgaaaaagccatttatttgtttgttaataatactatcccaccaa 394


Query: 395 ctgctgctttaatttctcaaatttatgaacgttataaggatgaagatggatttttataca 454
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 ctgctgctttaatttctcaaatttatgaacgttataaggatgaagatggatttttataca 454


Query: 455 ttacttacagtggtgaaaatacttttggtagtgatttataacctattataatccatgaat 514
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 455 ttacttacagtggtgaaaatacttttggtagtgatttataacctattataatccatgaat 514


Query: 515 gtattcatgcactctgagagaaagaagaccaccaaatgtatatagatccaaacaataata 574
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 515 gtattcatgcactctgagagaaagaagaccaccaaatgtatatagatccaaacaataata 574


Query: 575 gtttgccaaatgaatggaaactttaatctcttttagttatgatacttacacaattgtaaa 634
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 gtttgccaaatgaatggaaactttaatctcttttagttatgatacttacacaattgtaaa 634


Query: 635 tcttcttttttcaatttct 653
|||||||||||||||||||
Sbjct: 635 tcttcttttttcaatttct 653


Score = 87.7 bits (44), Expect = 2e-17
Identities = 44/44 (100%)
Strand = Plus / Plus


Query: 1 aatttcctaaatacatagtttttaaaacaaacatttaatatcac 44
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatttcctaaatacatagtttttaaaacaaacatttaatatcac 44


Score = 63.9 bits (32), Expect = 2e-10
Identities = 32/32 (100%)
Strand = Plus / Plus


Query: 721 taacttttctattgttttttttttttatacat 752
||||||||||||||||||||||||||||||||
Sbjct: 721 taacttttctattgttttttttttttatacat 752


Score = 30.2 bits (15), Expect = 3.4
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 732 ttgtttttttttttt 746
|||||||||||||||
Sbjct: 712 ttgtttttttttttt 698


Score = 30.2 bits (15), Expect = 3.4
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 732 ttgtttttttttttt 746
|||||||||||||||
Sbjct: 771 ttgtttttttttttt 757


Score = 30.2 bits (15), Expect = 3.4
Identities = 15/15 (100%)
Strand = Plus / Minus


Query: 732 ttgtttttttttttt 746
|||||||||||||||
Sbjct: 675 ttgtttttttttttt 661


>Contig-U06663-1 (Contig-U06663-1Q) /CSM_Contig/Contig-U06663-1Q.Seq.d
Length = 509

Score = 466 bits (235), Expect = e-131
Identities = 235/235 (100%)
Strand = Plus / Plus


Query: 419 atgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaatactt 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 atgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaatactt 315


Query: 479 ttggtagtgatttataacctattataatccatgaatgtattcatgcactctgagagaaag 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 ttggtagtgatttataacctattataatccatgaatgtattcatgcactctgagagaaag 375


Query: 539 aagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaaacttt 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 376 aagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaaacttt 435


Query: 599 aatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 653
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 436 aatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 490


>Contig-U04457-1 (Contig-U04457-1Q) /CSM_Contig/Contig-U04457-1Q.Seq.d
Length = 226

Score = 40.1 bits (20), Expect = 0.004
Identities = 47/56 (83%)
Strand = Plus / Minus


Query: 428 ataaggatgaagatggatttttatacattacttacagtggtgaaaatacttttggt 483
|||| ||||||||||| |||||||| ||| || || ||||||||||| ||||||
Sbjct: 207 ataaagatgaagatggctttttatatatttgctatagcggtgaaaatacatttggt 152


Score = 32.2 bits (16), Expect = 0.87
Identities = 19/20 (95%)
Strand = Plus / Plus


Query: 727 ttctattgtttttttttttt 746
|||| |||||||||||||||
Sbjct: 78 ttctgttgtttttttttttt 97


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 83,055
Number of Sequences: 6905
Number of extensions: 83055
Number of successful extensions: 6662
Number of sequences better than 10.0: 775
length of query: 791
length of database: 5,674,871
effective HSP length: 16
effective length of query: 775
effective length of database: 5,564,391
effective search space: 4312403025
effective search space used: 4312403025
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.22
Homology vs DNA
Query= Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Contig-U14442-1Q.Seq.d
(791 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C84099) Dictyostelium discoideum slug cDNA, clone SSC775. 1063 0.0 1
(AU060747) Dictyostelium discoideum slug cDNA, clone SLB339. 989 0.0 1
(AY191015) Dictyostelium discoideum autophagy protein 8 (apg... 569 0.0 3
(AU267548) Dictyostelium discoideum vegetative cDNA clone:VS... 507 e-139 1
(AU075059) Dictyostelium discoideum slug cDNA, clone SSM844. 468 e-127 1
(AU263382) Dictyostelium discoideum vegetative cDNA clone:VS... 466 e-127 1
(AU270007) Dictyostelium discoideum vegetative cDNA clone:VS... 345 2e-90 1
(EL814842) CBWN1229.b1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 174 4e-83 2
(EL814843) CBWN1229.g1 NICHD_XGC_tropTe1 Xenopus (Silurana) ... 174 4e-83 2
(BJ369724) Dictyostelium discoideum cDNA clone:ddc51d18, 5' ... 190 1e-47 2
(DY895673) CeleSEQ15557 Cunninghamella elegans pBluescript (... 62 1e-15 2
(AI778150) EST259029 tomato susceptible, Cornell Solanum lyc... 74 2e-15 2
(AI773758) EST254858 tomato resistant, Cornell Solanum lycop... 74 2e-15 2
(DB698049) Solanum lycopersicum cDNA, clone: LEFL1062CH02, 5... 74 3e-15 2
(AW222950) EST299761 tomato fruit red ripe, TAMU Solanum lyc... 74 3e-15 2
(DB716590) Solanum lycopersicum cDNA, clone: LEFL2023I02, 5'... 74 3e-15 2
(DB704344) Solanum lycopersicum cDNA, clone: LEFL1085AH10, 5... 74 3e-15 2
(AI489093) EST247432 tomato ovary, TAMU Solanum lycopersicum... 74 1e-14 2
(ES754263) C20L_41_G06_E002.g1 USDA-Tifton Peanut Library C2... 72 1e-13 2
(ES754381) C20L_43_F09_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2
(EC819766) SME00006936 esmbsro2 Sawyeria marylandensis cDNA,... 74 2e-13 3
(ES752464) C20L_12_F10_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2
(ES707591) C20R7_5_A06_E002.g1 USDA-Tifton Peanut Library C2... 72 2e-13 2
(DW129134) CLSX5926.b1_L17.ab1 CLS(XYZ) lettuce sativa Lactu... 50 3e-13 3
(DW129314) CLSX6090.b1_D12.ab1 CLS(XYZ) lettuce sativa Lactu... 50 3e-13 3
(DY977129) CLSS10888.b1_P09.ab1 CLS(LMS) lettuce sativa Lact... 50 3e-13 3
(DR455400) CM033H03 Cotton Lambda Zap Express Library Gossyp... 52 4e-13 3
(DW505461) GH_TMIRS_094_C01_F Cotton Normalized Library dT p... 52 6e-13 3
(DV122168) CV03031A2B10.f1 CV03-normalized library Euphorbia... 58 9e-13 2
(EX171855) H05_F-23_045 Cotton 1-14 day post anthesis Lambda... 50 3e-12 3
(AW255445) ML467 peppermint glandular trichome Mentha x pipe... 54 4e-11 2
(DW170881) CLVZ1905.b1_B22.ab1 CLV(XYZ) lettuce virosa Lactu... 50 7e-11 3
(DW164343) CLVY2874.b1_D23.ab1 CLV(XYZ) lettuce virosa Lactu... 50 7e-11 3
(CF924213) DD016D06.ab1 Codonopsis lanceolata cDNA library C... 74 1e-10 2
(ES761669) ISBL_11_F03_E003.g1 USDA-Tifton Peanut Library IS... 80 1e-10 1
(DN982555) SV6_49A06_SV6_49_037 SV6 Solanum chacoense cDNA, ... 54 2e-10 2
(EH708386) CCIS7683.b1_E01.ab1 CCI(LMS) chicory Cichorium in... 56 3e-09 2
(EH701274) CCIS13379.b1_F10.ab1 CCI(LMS) chicory Cichorium i... 50 4e-09 3
(EH704595) CCIS3481.b1_A07.ab1 CCI(LMS) chicory Cichorium in... 50 4e-09 3
(BU547998) GM880014A20B03 Gm-r1088 Glycine max cDNA clone Gm... 60 4e-09 3
(AI488831) EST247170 tomato ovary, TAMU Solanum lycopersicum... 74 9e-09 1
(BE462308) EST324572 tomato flower buds 0-3 mm, Cornell Univ... 74 9e-09 1
(AW222900) EST299711 tomato fruit red ripe, TAMU Solanum lyc... 74 9e-09 1
(BP961342) Euphorbia tirucalli mRNA, clone: ETC042A06, 5' end. 50 1e-08 2
(BP961344) Euphorbia tirucalli mRNA, clone: ETC020E06, 5' end. 50 1e-08 2
(BP961343) Euphorbia tirucalli mRNA, clone: ETC103C07, 5' end. 50 1e-08 2
(DN977925) SV5_46E12_SV5_46_087 SV5 Solanum chacoense cDNA, ... 50 1e-08 2
(CT577157) Pinus pinaster bud EST. 56 1e-08 3
(CT577353) Pinus pinaster bud EST. 56 1e-08 3
(BX677559) Pinus pinaster root EST, clone RN41B12. 56 2e-08 3
(BX784212) Pinus pinaster xylem EST, clone 130G07 similar to... 56 2e-08 3
(BI432772) EST535533 P. infestans-challenged potato leaf, co... 50 3e-08 2
(CK720007) 20343 Swollen Stolon Solanum tuberosum cDNA, mRNA... 50 3e-08 2
(DW515450) GH_TMIRS_191_F12_F Cotton Normalized Library dT p... 50 3e-08 3
(ES708814) C20R7_24_F08_E002.g1 USDA-Tifton Peanut Library C... 72 3e-08 1
(DV122303) CV03031B1F06.f1 CV03-normalized library Euphorbia... 58 4e-08 2
(DW496426) GH_TMIRS_005_H08_F Cotton Normalized Library dT p... 50 5e-08 3
(DW519723) GH_TMIRS_233_F11_F Cotton Normalized Library dT p... 50 5e-08 3
(ES835782) UFL_012_81 Cotton fiber 0-10 day post anthesis Go... 50 5e-08 3
(DW515892) GH_TMIRS_196_A10_F Cotton Normalized Library dT p... 50 5e-08 3
(EX165826) B02_P-18_014 Cotton 1-14 day post anthesis Lambda... 50 8e-08 3
(EC819881) SME00008350 esmbsro2 Sawyeria marylandensis cDNA,... 58 8e-08 2
(CV198128) CGF1003960_D07 Seed coat from mid-season walnut e... 58 1e-07 2
(C93223) Dictyostelium discoideum slug cDNA, clone SSM844. 58 1e-07 2
(DV453384) CV02012B2E02.f1 CV02-normalized library Manihot e... 46 2e-07 2
(DB928388) Manihot esculenta mRNA, clone: CAS01_024_C07, 5'end. 46 2e-07 2
(DB928560) Manihot esculenta mRNA, clone: CAS01_024_K08, 5'end. 46 2e-07 2
(DY675077) STRC393JX cold-stressed Fragaria vesca seedlings ... 52 2e-07 3
(AC215407) Solanum lycopersicum chromosome 2 clone C02HBa016... 46 2e-07 4
(AI938666) sb56h11.y1 Gm-c1018 Glycine max cDNA clone GENOME... 60 4e-07 3
(BG790340) sae68b09.y1 Gm-c1064 Glycine max cDNA clone GENOM... 52 5e-07 3
(DN244174) ACAE-aaa24n15.g1 Hydra EST UCI 5 Hydra magnipapil... 66 5e-07 2
(CX547236) gmrtDrNS01_05-A_M13R_G01_003.s4 Water stressed 48... 60 5e-07 3
(CX547064) gmrtDrNS01_02-A_T3_D02_010.s4 Water stressed 48h ... 60 5e-07 3
(FK011651) GLQAG79TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 5e-07 3
(BM092822) sah19d04.y3 Gm-c1086 Glycine max cDNA clone GENOM... 60 6e-07 3
(BM086397) sah39e05.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 60 6e-07 3
(EH701695) CCIS13764.b1_H10.ab1 CCI(LMS) chicory Cichorium i... 48 6e-07 2
(EH055499) THL52h-1114 cDNA library of Tamarix hispida leave... 42 6e-07 3
(BE660973) 324 GmaxSC Glycine max cDNA, mRNA sequence. 60 6e-07 3
(FK012826) GLQAN40TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 6e-07 3
(BU761436) sas71h03.y1 Gm-c1036 Glycine max cDNA clone SOYBE... 60 7e-07 3
(EL511937) CHEZ418.b1_C09.ab1 CHE(XYZ) serpentine sunflower ... 42 7e-07 3
(FK014089) GLQAU46TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3
(FK012827) GLQAN40TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3
(EV273686) GLMBY21TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 7e-07 3
(FG993098) GLLE612TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 60 7e-07 3
(FG995738) GLLEL57TF JCVI-SOY1 Glycine max cDNA 5', mRNA seq... 60 8e-07 3
(CF921837) gmrhRww24-04-T7_A06_1_048 Soybean root hair subtr... 60 8e-07 3
(FK011652) GLQAG79TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 8e-07 3
(FK014090) GLQAU46TR JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 60 8e-07 3
(FK023572) GLRAD52TF JCVI-SOY3 Glycine max cDNA 5', mRNA seq... 60 1e-06 3
(EH042448) AS1RN23P1A06.ab1 Healthy Roots (RN) Arachis steno... 42 2e-06 3
(DR062354) iq15h03.g1 Cycas ovule (NYBG) Cycas rumphii cDNA ... 48 2e-06 2
(BG275529) NXSI_139_H10_F NXSI (Nsf Xylem Side wood Inclined... 48 2e-06 3
(DR062916) iq23d09.g1 Cycas ovule (NYBG) Cycas rumphii cDNA ... 48 2e-06 2
(EX948466) lj84h04.g7 Gnetum gnemon leaf (NYBG) Gnetum gnemo... 66 2e-06 1
(EX011654) HTAB-aad34c10.b1 Heterorhabditis_bacteriophora_HT... 46 3e-06 3
(ES739119) HTAB-aab24h03.b1 Heterorhabditis_bacteriophora_HT... 46 3e-06 3
(BQ198501) NXLV132_A08_F NXLV (Nsf Xylem Late wood Vertical)... 48 3e-06 3

>(C84099) Dictyostelium discoideum slug cDNA, clone SSC775.
Length = 589

Score = 1063 bits (536), Expect = 0.0
Identities = 539/540 (99%)
Strand = Plus / Plus


Query: 114 tatacaatttaaaatggttcatgtatcaagctttaaaaacgaccacccactcgacaaaag 173
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 7 tatacaatttaaaatggttcatgtatcaagctctaaaaacgaccacccactcgacaaaag 66


Query: 174 aagagcagtagctgaacgtattagatcaaagtatcttgatagaattccagttattgtaga 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 67 aagagcagtagctgaacgtattagatcaaagtatcttgatagaattccagttattgtaga 126


Query: 234 gaaagctccaagatcagatgctccagacatcgataaaaagaaatacttagtaccagctga 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 127 gaaagctccaagatcagatgctccagacatcgataaaaagaaatacttagtaccagctga 186


Query: 294 tattactgttggtaaatttgtttatgaaatttgaaagcatatgaccaaagttagtgctga 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 187 tattactgttggtaaatttgtttatgaaatttgaaagcatatgaccaaagttagtgctga 246


Query: 354 aaaagccatttatttgtttgttaataatactatcccaccaactgctgctttaatttctca 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 aaaagccatttatttgtttgttaataatactatcccaccaactgctgctttaatttctca 306


Query: 414 aatttatgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaa 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 aatttatgaacgttataaggatgaagatggatttttatacattacttacagtggtgaaaa 366


Query: 474 tacttttggtagtgatttataacctattataatccatgaatgtattcatgcactctgaga 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tacttttggtagtgatttataacctattataatccatgaatgtattcatgcactctgaga 426


Query: 534 gaaagaagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaa 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaaagaagaccaccaaatgtatatagatccaaacaataatagtttgccaaatgaatggaa 486


Query: 594 actttaatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 653
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 487 actttaatctcttttagttatgatacttacacaattgtaaatcttcttttttcaatttct 546

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 783,107,252
Number of extensions: 48232272
Number of successful extensions: 3870643
Number of sequences better than 10.0: 1139
Length of query: 791
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 767
Effective length of database: 97,308,875,965
Effective search space: 74635907865155
Effective search space used: 74635907865155
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14442-1 (Contig-U14442-1Q) /CSM_Contig/Contig-U14442-1Q.Seq.d
(791 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(Q86CR8) RecName: Full=Autophagy-related protein 8; AltName: Ful... 240 3e-62
EU935007_1(EU935007|pid:none) Acanthamoeba castellanii autophagy... 187 4e-46
BT060763_1(BT060763|pid:none) Zea mays full-length cDNA clone ZM... 175 2e-42
(A2YS06) RecName: Full=Autophagy-related protein 8C; AltName: Fu... 173 7e-42
(Q8H715) RecName: Full=Autophagy-related protein 8; AltName: Ful... 172 1e-41
BT065336_1(BT065336|pid:none) Zea mays full-length cDNA clone ZM... 171 2e-41
EU971810_1(EU971810|pid:none) Zea mays clone 370920 autophagy-re... 171 2e-41
CP001334_206(CP001334|pid:none) Micromonas sp. RCC299 chromosome... 170 4e-41
(A2XXR7) RecName: Full=Autophagy-related protein 8B; AltName: Fu... 170 6e-41
AY311346_1(AY311346|pid:none) Gossypium hirsutum microtubule-ass... 169 9e-41
(Q9SL04) RecName: Full=Autophagy-related protein 8d; AltName: Fu... 168 2e-40
DQ122902_1(DQ122902|pid:none) Chlamydomonas incerta microtubule-... 167 3e-40
EF148151_1(EF148151|pid:none) Populus trichocarpa clone WS0128_B... 167 3e-40
AB453310_1(AB453310|pid:none) Glycine max GmATG8d mRNA, complete... 165 2e-39
AJ489614_1(AJ489614|pid:none) Cicer arietinum mRNA for microtubu... 165 2e-39
AY085349_1(AY085349|pid:none) Arabidopsis thaliana clone 14759 m... 165 2e-39
(Q8S927) RecName: Full=Autophagy-related protein 8c; AltName: Fu... 165 2e-39
(Q8LEM4) RecName: Full=Autophagy-related protein 8a; AltName: Fu... 165 2e-39
(Q51MW4) RecName: Full=Autophagy-related protein 8; AltName: Ful... 164 3e-39
(Q5B2U9) RecName: Full=Autophagy-related protein 8; AltName: Ful... 163 5e-39
(Q8J282) RecName: Full=Autophagy-related protein 8; AltName: Ful... 163 7e-39
(A7KAL9) RecName: Full=Autophagy-related protein 8; AltName: Ful... 163 7e-39
(A1CQS1) RecName: Full=Autophagy-related protein 8; AltName: Ful... 163 7e-39
EU430269_1(EU430269|pid:none) Gibberella zeae strain ZF2021 micr... 163 7e-39
(Q8WZY7) RecName: Full=Autophagy-related protein 8; AltName: Ful... 162 9e-39
(Q1E4K5) RecName: Full=Autophagy-related protein 8; AltName: Ful... 162 1e-38
EF148462_1(EF148462|pid:none) Populus trichocarpa x Populus delt... 162 1e-38
(Q2GVL1) RecName: Full=Autophagy-related protein 8; AltName: Ful... 162 1e-38
EF145014_1(EF145014|pid:none) Populus trichocarpa clone WS0111_I... 162 2e-38
(Q9XEB5) RecName: Full=Autophagy-related protein 8b; AltName: Fu... 161 3e-38
AJ417518_1(AJ417518|pid:none) Oryza sativa partial mRNA for puta... 161 3e-38
EU477413_1(EU477413|pid:none) Moniliophthora perniciosa autophag... 160 3e-38
(P87068) RecName: Full=Autophagy-related protein 8; AltName: Ful... 160 3e-38
U93506_1(U93506|pid:none) Laccaria bicolor symbiosis-related pro... 160 3e-38
(Q5KN30) RecName: Full=Autophagy-related protein 8; AltName: Ful... 160 4e-38
(A6RPU4) RecName: Full=Autophagy-related protein 8; AltName: Ful... 160 4e-38
EF575989_1(EF575989|pid:none) Oryza sativa (indica cultivar-grou... 159 7e-38
(Q4P2U6) RecName: Full=Autophagy-related protein 8; AltName: Ful... 158 2e-37
(Q6FXR8) RecName: Full=Autophagy-related protein 8; AltName: Ful... 156 6e-37
AC004392_23(AC004392|pid:none) Arabidopsis thaliana chromosome 1... 156 6e-37
(Q8S926) RecName: Full=Autophagy-related protein 8e; AltName: Fu... 156 8e-37
(Q8NJJ4) RecName: Full=Autophagy-related protein 8; AltName: Ful... 155 1e-36
(P0C075) RecName: Full=Autophagy-related protein 8; AltName: Ful... 155 1e-36
FM992688_532(FM992688|pid:none) Candida dubliniensis CD36 chromo... 154 2e-36
AC138087_29(AC138087|pid:none) Medicago truncatula clone mth2-22... 154 3e-36
(Q6CMF8) RecName: Full=Autophagy-related protein 8; AltName: Ful... 153 7e-36
(A3GFU8) RecName: Full=Autophagy-related protein 8; AltName: Ful... 152 9e-36
AY461412_1(AY461412|pid:none) Hevea brasiliensis microtubule-ass... 150 5e-35
CR954201_557(CR954201|pid:none) Ostreococcus tauri strain OTTH05... 150 6e-35
(O94272) RecName: Full=Autophagy-related protein 8; AltName: Ful... 149 1e-34
DQ445535_1(DQ445535|pid:none) Graphocephala atropunctata isolate... 134 3e-30
AY191782_1(AY191782|pid:none) Branchiostoma belcheri hypothetica... 134 3e-30
AY894115_1(AY894115|pid:none) Synthetic construct Homo sapiens c... 134 4e-30
AK002879_1(AK002879|pid:none) Mus musculus adult male kidney cDN... 134 4e-30
AK312205_1(AK312205|pid:none) Homo sapiens cDNA, FLJ92494, highl... 131 2e-29
AY190697_1(AY190697|pid:none) Pagrus major gaba receptor protein... 131 3e-29
BT043942_1(BT043942|pid:none) Salmo salar clone HM4_2381 GABARAP... 131 3e-29
AY117146_1(AY117146|pid:none) Bos taurus cell-line MDBK gamma-am... 130 4e-29
(P60519) RecName: Full=Gamma-aminobutyric acid receptor-associat... 130 5e-29
BC106474_1(BC106474|pid:none) Xenopus laevis hypothetical protei... 130 5e-29
BT075345_1(BT075345|pid:none) Osmerus mordax clone omor-eva-007-... 130 6e-29
BT047825_1(BT047825|pid:none) Salmo salar clone ssal-eve-533-328... 130 6e-29
BT043696_1(BT043696|pid:none) Salmo salar clone HM5_2203 GABA(A)... 130 6e-29
BC056701_1(BC056701|pid:none) Danio rerio GABA(A) receptor-assoc... 130 6e-29
BT057079_1(BT057079|pid:none) Salmo salar clone ssal-eve-558-345... 129 8e-29
BT046939_1(BT046939|pid:none) Salmo salar clone ssal-evd-528-161... 129 8e-29
BT079438_1(BT079438|pid:none) Esox lucius clone eluc-evq-540-058... 129 8e-29
BT073647_1(BT073647|pid:none) Oncorhynchus mykiss clone omyk-evn... 129 8e-29
BT075103_1(BT075103|pid:none) Osmerus mordax clone omor-eva-508-... 129 8e-29
AK315418_1(AK315418|pid:none) Homo sapiens cDNA, FLJ96471, highl... 129 8e-29
BT046480_1(BT046480|pid:none) Salmo salar clone ssal-eve-577-076... 129 8e-29
AF077046_1(AF077046|pid:none) Homo sapiens ganglioside expressio... 129 1e-28
BC068621_1(BC068621|pid:none) Xenopus laevis hypothetical protei... 129 1e-28
AK159015_1(AK159015|pid:none) Mus musculus visual cortex cDNA, R... 129 1e-28
DQ768299_1(DQ768299|pid:none) Trypanosoma cruzi Atg8-like protei... 129 1e-28
BC024706_1(BC024706|pid:none) Mus musculus gamma-aminobutyric ac... 128 2e-28
DQ215684_1(DQ215684|pid:none) Taeniopygia guttata clone 0058P001... 128 2e-28
BT048217_1(BT048217|pid:none) Salmo salar clone ssal-rgb2-637-38... 128 2e-28
AK002596_1(AK002596|pid:none) Mus musculus adult male kidney cDN... 128 2e-28
AY398351_1(AY398351|pid:none) Danio rerio clone RZ145A3D05 GABA(... 128 2e-28
EZ048863_1(EZ048863|pid:none) TSA: Stomoxys calcitrans SC-4-40-1... 127 3e-28
BT077486_1(BT077486|pid:none) Lepeophtheirus salmonis Pacific fo... 127 4e-28
AE014298_1550(AE014298|pid:none) Drosophila melanogaster chromos... 127 5e-28
AF266198_1(AF266198|pid:none) Gillichthys mirabilis GABA(A) rece... 126 9e-28
DQ215678_1(DQ215678|pid:none) Taeniopygia guttata clone 0061P000... 126 9e-28
EF585860_1(EF585860|pid:none) Sonneratia alba isolate Sonn393_1 ... 125 2e-27
AE014297_2486(AE014297|pid:none) Drosophila melanogaster chromos... 124 3e-27
BT082173_1(BT082173|pid:none) Anoplopoma fimbria clone afim-evh-... 124 3e-27
BT056624_1(BT056624|pid:none) Salmo salar clone ssal-eve-526-218... 124 5e-27
BT073932_1(BT073932|pid:none) Oncorhynchus mykiss clone omyk-evo... 124 5e-27
BT046413_1(BT046413|pid:none) Salmo salar clone ssal-evd-004-015... 124 5e-27
AK340444_1(AK340444|pid:none) Acyrthosiphon pisum ACYPI004701 mR... 123 6e-27
(Q9LRP7) RecName: Full=Autophagy-related protein 8i; AltName: Fu... 122 2e-26
FN357697_17(FN357697|pid:none) Schistosoma mansoni genome sequen... 121 2e-26
(Q9BY60) RecName: Full=Gamma-aminobutyric acid receptor-associat... 121 2e-26
BT073187_1(BT073187|pid:none) Oncorhynchus mykiss clone omyk-evn... 121 3e-26
BT073231_1(BT073231|pid:none) Oncorhynchus mykiss clone omyk-evn... 121 3e-26
DQ864960_1(DQ864960|pid:none) Pfiesteria piscicida clone Ppi-118... 120 5e-26
AM910988_40(AM910988|pid:none) Plasmodium knowlesi strain H chro... 119 1e-25
AM042544_1(AM042544|pid:none) Sordaria macrospora partial cdp ge... 118 2e-25
BT073163_1(BT073163|pid:none) Oncorhynchus mykiss clone omyk-evn... 118 2e-25
(Q8S925) RecName: Full=Autophagy-related protein 8h; AltName: Fu... 117 6e-25
AC136840_8(AC136840|pid:none) Medicago truncatula clone mth2-33n... 113 8e-24
DQ115351_1(DQ115351|pid:none) Caenorhabditis remanei GABA(A) rec... 110 7e-23
(Q2RBS4) RecName: Full=Autophagy-related protein 8D; AltName: Fu... 110 7e-23
FN357544_31(FN357544|pid:none) Schistosoma mansoni genome sequen... 109 1e-22
AE014185_191(AE014185|pid:none) Plasmodium falciparum 3D7 chromo... 108 2e-22
BT056836_1(BT056836|pid:none) Salmo salar clone ssal-evd-545-162... 108 2e-22
EU958533_1(EU958533|pid:none) Zea mays clone 1700855 unknown mRNA. 106 1e-21
AC091553_5(AC091553|pid:none) Trypanosoma brucei chromosome 7 cl... 106 1e-21
AL161544_11(AL161544|pid:none) Arabidopsis thaliana DNA chromoso... 105 2e-21
AX885095_1(AX885095|pid:none) Sequence 958 from Patent EP1033401. 102 1e-20
BT047298_1(BT047298|pid:none) Salmo salar clone ssal-evd-547-042... 102 1e-20
BT049424_1(BT049424|pid:none) Salmo salar clone ssal-evd-515-281... 102 1e-20
AY232215_1(AY232215|pid:none) Drosophila yakuba clone yak-ad_CG1... 100 4e-20
EU968461_1(EU968461|pid:none) Zea mays clone 321107 unknown mRNA. 99 2e-19
AB170188_1(AB170188|pid:none) Macaca fascicularis brain cDNA clo... 89 1e-16
(Q9BXW4) RecName: Full=Microtubule-associated proteins 1A/1B lig... 89 2e-16
AB264295_1(AB264295|pid:none) Danio rerio MAP1-LC3C mRNA for mic... 85 2e-15
AY815947_1(AY815947|pid:none) Schistosoma japonicum SJCHGC06869 ... 84 4e-15
BC155037_1(BC155037|pid:none) Xenopus tropicalis microtubule-ass... 84 5e-15
BC123362_1(BC123362|pid:none) Xenopus laevis hypothetical protei... 81 3e-14
CR940348_624(CR940348|pid:none) Theileria annulata strain Ankara... 81 4e-14
AL596185_22(AL596185|pid:none) Mouse DNA sequence from clone RP2... 79 2e-13
BC064267_1(BC064267|pid:none) Xenopus tropicalis microtubule-ass... 74 4e-12
AB264293_1(AB264293|pid:none) Danio rerio MAP1-LC3A mRNA for mic... 74 4e-12
AB461861_1(AB461861|pid:none) Thunnus orientalis MAP1-LC3B mRNA ... 74 7e-12
EU955436_1(EU955436|pid:none) Zea mays clone 1532092 unknown mRNA. 74 7e-12
AB461862_1(AB461862|pid:none) Seriola quinqueradiata MAP1-LC3B m... 73 9e-12
AB264294_1(AB264294|pid:none) Danio rerio MAP1-LC3B mRNA for mic... 73 9e-12
BT081673_1(BT081673|pid:none) Rana catesbeiana clone rcat-evr-53... 72 2e-11
(Q9GZQ8) RecName: Full=Microtubule-associated proteins 1A/1B lig... 72 2e-11
DQ217070_1(DQ217070|pid:none) Taeniopygia guttata clone 0058P003... 72 2e-11
BT077149_1(BT077149|pid:none) Caligus rogercresseyi clone crog-e... 72 2e-11
AY206669_1(AY206669|pid:none) Rattus norvegicus map1a/1b light c... 72 3e-11
AJ719776_1(AJ719776|pid:none) Gallus gallus mRNA for hypothetica... 72 3e-11
EU974367_1(EU974367|pid:none) Zea mays clone 447224 hypothetical... 72 3e-11
DQ768300_1(DQ768300|pid:none) Trypanosoma cruzi Atg8-like protei... 72 3e-11
BT080304_1(BT080304|pid:none) Caligus clemensi clone ccle-evs-50... 71 3e-11
BC043946_1(BC043946|pid:none) Xenopus laevis microtubule-associa... 71 3e-11
BT077123_1(BT077123|pid:none) Caligus rogercresseyi clone crog-e... 71 3e-11
BC080488_1(BC080488|pid:none) Xenopus tropicalis map1lc3a protei... 71 5e-11
FJ445010_1(FJ445010|pid:none) Zea mays autophagy-related 8d vari... 70 6e-11
(O41515) RecName: Full=Microtubule-associated proteins 1A/1B lig... 70 6e-11
BC056047_1(BC056047|pid:none) Xenopus laevis hypothetical protei... 70 1e-10
AL118520_1(AL118520|pid:none) Human DNA sequence from clone RP11... 69 2e-10
(A6NCE7) RecName: Full=Microtubule-associated proteins 1A/1B lig... 69 2e-10
AP008217_1(AP008217|pid:none) Oryza sativa (japonica cultivar-gr... 69 2e-10
AC159429_47(AC159429|pid:none) Trypanosoma brucei chromosome 7 c... 68 3e-10
AM904769_1(AM904769|pid:none) Carassius carassius partial mRNA f... 68 4e-10
EU652742_1(EU652742|pid:none) Caenorhabditis brenneri clone 10C5... 67 7e-10
(Q6H6P0) RecName: Full=Putative autophagy-related protein 8E; Al... 65 3e-09
AM502237_66(AM502237|pid:none) Leishmania infantum chromosome 19. 55 3e-06
AM502237_68(AM502237|pid:none) Leishmania infantum chromosome 19. 54 8e-06
CT005258_94(CT005258|pid:none) Leishmania major strain Friedlin,... 53 1e-05
AB326955_1(AB326955|pid:none) Entamoeba invadens Atg8 gene for a... 53 1e-05
CT005258_92(CT005258|pid:none) Leishmania major strain Friedlin,... 52 2e-05
AJ297742_1(AJ297742|pid:none) Bos taurus partial mRNA for GABA-A... 52 2e-05
CT005258_84(CT005258|pid:none) Leishmania major strain Friedlin,... 52 3e-05
AM494956_114(AM494956|pid:none) Leishmania braziliensis chromoso... 51 5e-05
CT005258_85(CT005258|pid:none) Leishmania major strain Friedlin,... 51 5e-05
CT005258_90(CT005258|pid:none) Leishmania major strain Friedlin,... 49 1e-04
AM494959_119(AM494959|pid:none) Leishmania braziliensis chromoso... 49 1e-04
BC045759_1(BC045759|pid:none) Homo sapiens microtubule-associate... 48 3e-04
CT005261_128(CT005261|pid:none) Leishmania major strain Friedlin... 47 7e-04
FJ416329_1(FJ416329|pid:none) Bombyx mori autophagy related prot... 42 0.023
BT075169_1(BT075169|pid:none) Osmerus mordax clone omor-eva-515-... 42 0.030
BT062565_1(BT062565|pid:none) Zea mays full-length cDNA clone ZM... 40 0.11
AL050182_1(AL050182|pid:none) Homo sapiens mRNA; cDNA DKFZp586A1... 39 0.15
AL021890_18(AL021890|pid:none) Arabidopsis thaliana DNA chromoso... 38 0.33
EU441470_1(EU441470|pid:none) Xenopus borealis clone Map1lc3a.b ... 38 0.43
(Q2GSG9) RecName: Full=Autophagy-related protein 12; AltName: Fu... 37 0.95
CU633895_358(CU633895|pid:none) Podospora anserina genomic DNA c... 35 3.6
CT005248_28(CT005248|pid:none) Leishmania major strain Friedlin,... 34 4.7
CT005248_20(CT005248|pid:none) Leishmania major strain Friedlin,... 34 4.7
CT005248_29(CT005248|pid:none) Leishmania major strain Friedlin,... 34 4.7
CT005248_18(CT005248|pid:none) Leishmania major strain Friedlin,... 34 6.2
CT005248_24(CT005248|pid:none) Leishmania major strain Friedlin,... 34 6.2
(Q7S083) RecName: Full=Autophagy-related protein 12; AltName: Fu... 33 8.1

>(Q86CR8) RecName: Full=Autophagy-related protein 8; AltName:
Full=Autophagy-related ubiquitin-like modifier atg8;
Flags: Precursor; &AY191015_1(AY191015|pid:none)
Length = 122

Score = 240 bits (613), Expect = 3e-62
Identities = 120/122 (98%), Positives = 120/122 (98%)
Frame = +1

Query: 127 MVHVSSFKNDHPLDKRRAVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVG 306
MVHVSSFKNDHPLDKRR VAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVG
Sbjct: 1 MVHVSSFKNDHPLDKRREVAERIRSKYLDRIPVIVEKAPRSDAPDIDKKKYLVPADITVG 60

Query: 307 KFVYEI*KHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGS 486
KFVYEI KHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGS
Sbjct: 61 KFVYEIRKHMTKVSAEKAIYLFVNNTIPPTAALISQIYERYKDEDGFLYITYSGENTFGS 120

Query: 487 DL 492
DL
Sbjct: 121 DL 122

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 956,895,812
Number of extensions: 17653587
Number of successful extensions: 45614
Number of sequences better than 10.0: 179
Number of HSP's gapped: 45462
Number of HSP's successfully gapped: 179
Length of query: 263
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 137
Effective length of database: 643,374,430
Effective search space: 88142296910
Effective search space used: 88142296910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

PSORT

psg: 0.77 gvh: 0.26 alm: 0.51 top: 0.53 tms: 0.00 mit: 0.20 mip: 0.00
nuc: 0.20 erl: 0.00 erm: 0.00 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

56.0 %: nuclear
20.0 %: cytoplasmic
12.0 %: cytoskeletal
8.0 %: Golgi
4.0 %: plasma membrane

>> prediction for Contig-U14442-1 is nuc

VS (DIR, S) 2
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 1
SS (DIR, S) 2
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0