>Contig-U14418-1 (Contig-U14418-1Q) /CSM_Contig/Contig-U14418-1Q.Seq.d
AAATAATAATAATAATAATAAAAAAATAAAAATAAAAAATAATAATAATA
ATAATAATAATAATAAAAAAAATAAAATAAAATAAAAATAATTGTTTAAC
AATAAAAAATAATTATTTGAATAACTATAGTTTTAATTATATATTCATAT
AATAAATATATATATTAATTATTTTATTTTTTATTTTTTAATTTTAGATT
TATTTTTTTTTAATATTTTTTTTTAGTTAATTATTTTTTTTTTAATATAT
AAATAAAATTNGGANGTTAATTAAAGATNTTNTAAAAANAAAATNCCGTT
NNGGAANGTNGATAANAAAGAAGANGAATAGANNNNNNNNN

est1=CHN585F,1,332

iiiiiikk*k*kiiiiiiiiikkik*nknncltiknnylnnysfnyifi**iyiliilff
if*f*iyfflifffs*lfff*YINKIXXLIKDXXKXKXRXGXXIXKKXNRXXX

Frame A:
k******knknkk*********kk*nkikiiv*q*kiii*itivliiysynkyiy*lfyf
lffnfrfiff*yfflvnyfffni*ikxgx*lkxx*kxnxvxexx*xrrxixxx


Frame B:
nnnnnnkkikiknnnnnnnnnkknkik*k*lfnnkk*lfe*l*f*lyihiiniyinyfif
yflildlfffniff*liiffliyk*nxxvn*rxxkxkxpxxxvdxkexe*xxx


Frame C:
iiiiiikk*k*kiiiiiiiiikkik*nknncltiknnylnnysfnyifi**iyiliilff
if*f*iyfflifffs*lfff*YINKIXXLIKDXXKXKXRXGXXIXKKXNRXXX

Query= Contig-U14418-1 (Contig-U14418-1Q)
/CSM_Contig/Contig-U14418-1Q.Seq.d
         (341 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


 ***** No hits found ******

  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 0
Number of Sequences: 6905
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 341
length of database: 5,674,871
effective HSP length: 15
effective length of query: 326
effective length of database: 5,571,296
effective search space: 1816242496
effective search space used: 1816242496
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)

Query= Contig-U14418-1 (Contig-U14418-1Q) /CSM_Contig/Contig-U14418-1Q.Seq.d
         (341 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ369251) Dictyostelium discoideum cDNA clone:ddc49i21, 5' ...   103   4e-18  1

>(BJ369251) Dictyostelium discoideum cDNA clone:ddc49i21, 5' end,
           single read.
          Length = 332

 Score =  103 bits (52), Expect = 4e-18
 Identities = 88/88 (100%)
 Strand = Plus / Plus


Query: 245 atatataaataaaattnggangttaattaaagatnttntaaaaanaaaatnccgttnngg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 atatataaataaaattnggangttaattaaagatnttntaaaaanaaaatnccgttnngg 304


Query: 305 aangtngataanaaagaagangaataga 332
           ||||||||||||||||||||||||||||
Sbjct: 305 aangtngataanaaagaagangaataga 332

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 55,488,331
Number of extensions: 4721895
Number of successful extensions: 300429
Number of sequences better than 10.0: 1
Length of query: 341
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 318
Effective length of database: 93,106,754,628
Effective search space: 29607947971704
Effective search space used: 29607947971704
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

Query= Contig-U14418-1 (Contig-U14418-1Q) /CSM_Contig/Contig-U14418-1Q.Seq.d
         (341 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 39,629,715
Number of extensions: 611036
Number of successful extensions: 2
Number of sequences better than 10.0: 0
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 0
Length of query: 113
Length of database: 1,051,180,864
Length adjustment: 80
Effective length of query: 33
Effective length of database: 792,256,144
Effective search space: 26144452752
Effective search space used: 26144452752
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 28 (15.4 bits)

 psg: 0.44  gvh: 0.31  alm: 0.69  top: 0.53  tms: 0.00  mit: 0.34  mip: 0.00
 nuc: 0.12  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: nuclear
	 20.0 %: mitochondrial
	 20.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14418-1 is nuc