| Contig-U14415-1 |
| Contig ID |
Contig-U14415-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
848 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
5018371 |
| End point |
5019219 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
9 |
| Number of EST |
11 |
| Link to clone list |
U14415 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.21 |
| Homology vs DNA |
Query= Contig-U14415-1 (Contig-U14415-1Q) /CSM_Contig/Contig-U14415-1Q.Seq.d
(848 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ422940) Dictyostelium discoideum cDNA clone:ddv47e14, 5' ... 1283 0.0 1
(BJ397509) Dictyostelium discoideum cDNA clone:dds46g17, 5' ... 1205 0.0 1
(BJ369120) Dictyostelium discoideum cDNA clone:ddc49k11, 5' ... 1178 0.0 2
(AU261512) Dictyostelium discoideum vegetative cDNA clone:VS... 1112 0.0 2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175... 731 0.0 4
(AU268896) Dictyostelium discoideum vegetative cDNA clone:VS... 868 0.0 3
(AU038376) Dictyostelium discoideum slug cDNA, clone SSH635. 545 e-161 2
(AU038682) Dictyostelium discoideum slug cDNA, clone SSL342. 519 e-154 2
(C84857) Dictyostelium discoideum slug cDNA, clone SSG829. 505 e-149 2
(BJ408671) Dictyostelium discoideum cDNA clone:dds46g17, 3' ... 391 e-104 1
(AU073598) Dictyostelium discoideum slug cDNA, clone SSH635. 317 4e-82 1
(AU267501) Dictyostelium discoideum vegetative cDNA clone:VS... 200 6e-47 1
(AL844506) Plasmodium falciparum chromosome 7. 38 0.002 14
(CE050189) tigr-gss-dog-17000358081218 Dog Library Canis lup... 52 0.035 1
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 36 0.061 8
(AC115214) Rattus norvegicus clone CH230-109A14, *** SEQUENC... 50 0.14 1
(AC107477) Rattus norvegicus clone CH230-223C21, *** SEQUENC... 50 0.14 1
(AP010143) Lotus japonicus genomic DNA, clone: LjT38E08, TM0... 50 0.14 1
(FG669472) G1143P319RE9.T0 Anolis carolinensis pooled normal... 50 0.14 1
(FG669424) G1143P319FE9.T0 Anolis carolinensis pooled normal... 50 0.14 1
(CS468877) Sequence 68 from Patent EP1748080. 32 0.16 11
(CS419354) Sequence 68 from Patent WO2006094836. 32 0.16 11
(FD657839) MF1_173_B08.b1_F001 Limnanthes alba EST Library M... 44 0.40 2
(DW276374) UI-S-GU0-acy-j-02-0-UI.s1 UI-S-GU0 Euprymna scolo... 38 0.40 2
(AC218426) Bos taurus clone CH240-283B8, WORKING DRAFT SEQUE... 48 0.54 1
(EK193640) 1095460029477 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.54 1
(DX530694) GH_MBb0075A03r GH_MBb Gossypium hirsutum genomic ... 48 0.54 1
(CV841070) ID0ADD15AF05RM1 ID0ADD Acyrthosiphon pisum cDNA c... 48 0.54 1
(AC169783) Bos taurus clone CH240-210C19, WORKING DRAFT SEQU... 42 0.55 3
(CU041274) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 0.55 7
(CS468864) Sequence 55 from Patent EP1748080. 34 0.71 11
(CS419341) Sequence 55 from Patent WO2006094836. 34 0.71 11
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423... 36 0.84 11
(CS468878) Sequence 69 from Patent EP1748080. 32 0.86 12
(CS419355) Sequence 69 from Patent WO2006094836. 32 0.86 12
(FD649273) MF1_70_D04.b1_F001 Limnanthes alba EST Library MF... 44 1.0 2
(AE014833) Plasmodium falciparum 3D7 chromosome 10 section 5... 36 1.1 2
(AC098729) Mus musculus BAC clone RP23-3H23 from X, complete... 36 1.1 2
(AC146587) Medicago truncatula clone mth2-144j8, complete se... 34 1.1 9
(BX784027) Mouse DNA sequence from clone RP23-233B5 on chrom... 36 1.2 2
(CR387933) Zebrafish DNA sequence from clone DKEY-81L17 in l... 36 1.4 6
(AZ547559) ENTEL02TF Entamoeba histolytica Sheared DNA Entam... 32 1.5 2
(ED678553) GM_WBb0010J09.r GM_WBb Glycine max genomic clone ... 36 1.5 2
(AL929356) Plasmodium falciparum strain 3D7, chromosome 9; s... 32 1.5 11
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ... 36 1.6 6
(CZ973367) 173022 Tomato MboI BAC Library Solanum lycopersic... 42 1.7 2
(EK385067) 1095469479864 Global-Ocean-Sampling_GS-31-01-01-1... 42 1.7 2
(AM475263) Vitis vinifera contig VV78X144880.3, whole genome... 32 1.9 4
(DU016115) 238465 Tomato MboI BAC Library Solanum lycopersic... 42 1.9 2
(CU207285) Pig DNA sequence from clone CH242-406N12 on chrom... 46 2.1 1
(AC157228) Bos taurus clone CH240-71G5, WORKING DRAFT SEQUEN... 46 2.1 1
(AC169311) Bos taurus clone CH240-231B14, WORKING DRAFT SEQU... 46 2.1 1
(AC167353) Bos taurus clone CH240-185C5, WORKING DRAFT SEQUE... 46 2.1 1
(ET775811) CHO_OF572xa14f1.ab1 CHO_OF Nicotiana tabacum geno... 34 2.2 3
(AC219401) Bos taurus clone CH240-339F19, WORKING DRAFT SEQU... 34 2.6 5
(AC230228) Bos taurus clone CH240-518B24, WORKING DRAFT SEQU... 40 2.8 4
(AC146819) Medicago truncatula clone mth2-176k6, complete se... 38 2.8 4
(AR212927) Sequence 35 from patent US 6403306. 34 3.0 2
(DD391858) Method and nucleic acids for the improved treatme... 34 3.1 5
(DD210929) Method and nucleic acids for the analysis of colo... 34 3.1 5
(DD209213) test. 34 3.1 5
(CS250597) Sequence 141 from Patent WO2005123945. 34 3.1 5
(CQ807114) Sequence 564 from Patent WO2004035803. 34 3.1 5
(AX826050) Sequence 302 from Patent WO03072821. 34 3.1 5
(AX825611) Sequence 19 from Patent WO03072820. 34 3.1 5
(AX822410) Sequence 302 from Patent EP1340818. 34 3.1 5
(AX795894) Sequence 237 from Patent WO03052135. 34 3.1 5
(AC179558) Strongylocentrotus purpuratus clone R3-1032D14, W... 36 3.4 6
(AC005507) Plasmodium falciparum chromosome 12 clone 3D7, **... 32 3.5 9
(AG333887) Mus musculus molossinus DNA, clone:MSMg01-124J02.... 44 3.7 2
(AC084545) Caenorhabditis briggsae cosmid G30E10, complete s... 42 4.0 2
(CR388139) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 32 4.0 2
(BX537104) Zebrafish DNA sequence from clone DKEY-80G18 in l... 32 4.1 2
(CR388025) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 32 4.1 2
(AC010066) Drosophila melanogaster 3L BAC RPCI98-25O1 (Roswe... 34 4.1 2
(AC093454) Drosophila melanogaster 3L BAC RP98-23K2 (Roswell... 34 4.1 2
(AP010177) Lotus japonicus genomic DNA, chromosome 1, clone:... 34 4.2 2
(AL844509) Plasmodium falciparum chromosome 13. 38 4.2 12
(AE014825) Plasmodium falciparum 3D7 chromosome 14 section 1... 38 4.3 8
(AC014422) Drosophila melanogaster, *** SEQUENCING IN PROGRE... 34 4.4 2
(CQ597197) Sequence 24955 from Patent WO0171042. 34 4.8 2
(CQ583616) Sequence 11374 from Patent WO0171042. 34 4.8 2
(CQ583652) Sequence 11410 from Patent WO0171042. 34 5.0 2
(AC128039) Rattus norvegicus BAC CH230-394A24 (Children's H... 40 5.2 4
(ED811869) ML__Ba0066L23f ML__Ba Mimulus lewisii genomic, ge... 32 5.4 2
(AF083031) Guillardia theta nucleomorph chromosome 3, comple... 32 5.5 8
(DY391851) CL__Eb0006B01.r CL__Eb Curcuma longa cDNA clone C... 34 5.5 2
(EJ409924) 1093012132218 Global-Ocean-Sampling_GS-28-01-01-1... 34 5.8 2
(EJ605201) 1092962001667 Global-Ocean-Sampling_GS-29-01-01-1... 38 5.9 2
(AC068360) Homo sapiens chromosome 3 clone RP11-189B7 map 3,... 40 5.9 4
(CP000963) Clostridium botulinum A3 str. Loch Maree plasmid ... 34 5.9 8
(AZ674227) ENTMD93TR Entamoeba histolytica Sheared DNA Entam... 38 6.3 2
(AZ667640) ENTHM39TF Entamoeba histolytica Sheared DNA Entam... 38 6.5 2
(BH163178) ENTTE33TF Entamoeba histolytica Sheared DNA Entam... 38 6.5 2
(CR405706) Zebrafish DNA sequence from clone CH211-233D12 in... 32 6.7 8
(CW949642) TcB34.3_D04_SP6 Tribolium BAC library Tribolium c... 36 6.8 2
(BD460584) Diagnosis of Diseases Associated with Cell Cycle. 42 7.0 2
(BD452506) Diagnosis of Diseases Associated with Cell Cycle. 42 7.0 2
(AX252120) Sequence 381 from Patent WO0168911. 42 7.0 2
(CU915583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 7.7 5
>(BJ422940) Dictyostelium discoideum cDNA clone:ddv47e14, 5' end,
single read.
Length = 655
Score = 1283 bits (647), Expect = 0.0
Identities = 647/647 (100%)
Strand = Plus / Plus
Query: 9 gcatttacattaaacaaaaaagggtcatttattgacatatataaaagaaatcacaataca 68
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gcatttacattaaacaaaaaagggtcatttattgacatatataaaagaaatcacaataca 68
Query: 69 aaatgtttggaagaactttaaatacattcacatcaagaaatgcaccacttgtcagaaact 128
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 aaatgtttggaagaactttaaatacattcacatcaagaaatgcaccacttgtcagaaact 128
Query: 129 ttgataaatttattgtaaacaatacccttacatccaaaaacatttatttaagtcaaacca 188
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 ttgataaatttattgtaaacaatacccttacatccaaaaacatttatttaagtcaaacca 188
Query: 189 acacaaccaacaccccattatcatactcaactcaagcaaagaaaccattcactatcactg 248
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 acacaaccaacaccccattatcatactcaactcaagcaaagaaaccattcactatcactg 248
Query: 249 aaaaaagaattgatgaacttaaaactccataccaaccaacctcaccacatcttaccatat 308
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 aaaaaagaattgatgaacttaaaactccataccaaccaacctcaccacatcttaccatat 308
Query: 309 ataaattcccattaccagccgttatgtcaattatgcatcgtgctactggtatttgtttag 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ataaattcccattaccagccgttatgtcaattatgcatcgtgctactggtatttgtttag 368
Query: 369 ctttaggtattactggtcttgcaggtgttactctttttgcaccacatgacgcaattcact 428
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 ctttaggtattactggtcttgcaggtgttactctttttgcaccacatgacgcaattcact 428
Query: 429 acatccaactcctccatactcaatacccagcattagtttacccagccaaatttgctgttg 488
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 acatccaactcctccatactcaatacccagcattagtttacccagccaaatttgctgttg 488
Query: 489 cattaccattaacttatcatttctgtactggtgttagacacatcatttgggatgaaaccg 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 cattaccattaacttatcatttctgtactggtgttagacacatcatttgggatgaaaccg 548
Query: 549 ttaaaggtctttctatttcacaaattgaatcttctggtaaagttcttttagctgtcgttg 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 ttaaaggtctttctatttcacaaattgaatcttctggtaaagttcttttagctgtcgttg 608
Query: 609 cagttttatcaactattttcacctttgtttcatttaaataatcaatt 655
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 cagttttatcaactattttcacctttgtttcatttaaataatcaatt 655
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,011,681,423
Number of extensions: 67044579
Number of successful extensions: 5505110
Number of sequences better than 10.0: 155
Length of query: 848
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 824
Effective length of database: 97,308,875,965
Effective search space: 80182513795160
Effective search space used: 80182513795160
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.11 |
| Homology vs Protein |
Query= Contig-U14415-1 (Contig-U14415-1Q) /CSM_Contig/Contig-U14415-1Q.Seq.d
(848 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q8T2T5) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 386 e-106
BC087773_1(BC087773|pid:none) Xenopus tropicalis hypothetical LO... 102 2e-20
BC157546_1(BC157546|pid:none) Xenopus tropicalis hypothetical LO... 102 2e-20
BT057147_1(BT057147|pid:none) Salmo salar clone ssal-evd-542-176... 98 3e-19
I48085(I48085)integral membrane protein CII-3 - Chinese hamster ... 98 4e-19
CR457102_1(CR457102|pid:none) Homo sapiens full open reading fra... 96 1e-18
BT049986_1(BT049986|pid:none) Salmo salar clone ssal-evd-538-189... 95 3e-18
BT050078_1(BT050078|pid:none) Salmo salar clone ssal-evf-516-190... 94 6e-18
BX294126_6(BX294126|pid:none) Zebrafish DNA sequence from clone ... 93 1e-17
BT046946_1(BT046946|pid:none) Salmo salar clone ssal-evd-561-302... 93 1e-17
BX294126_7(BX294126|pid:none) Zebrafish DNA sequence from clone ... 93 1e-17
A45159(A45159) succinate dehydrogenase (ubiquinone) (EC 1.3.5.1)... 91 5e-17
BT025477_1(BT025477|pid:none) Bos taurus succinate dehydrogenase... 91 5e-17
(P35720) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 91 5e-17
(Q9CZB0) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 90 1e-16
AK002459_1(AK002459|pid:none) Mus musculus adult male kidney cDN... 90 1e-16
BC005779_1(BC005779|pid:none) Mus musculus succinate dehydrogena... 89 1e-16
AY232016_1(AY232016|pid:none) Drosophila yakuba clone yak-ad_CG6... 86 2e-15
AE014297_1292(AE014297|pid:none) Drosophila melanogaster chromos... 86 2e-15
CP001142_153(CP001142|pid:none) Phaeodactylum tricornutum CCAP 1... 84 6e-15
BT078000_1(BT078000|pid:none) Lepeophtheirus salmonis Pacific fo... 84 6e-15
BT078036_1(BT078036|pid:none) Lepeophtheirus salmonis Pacific fo... 84 8e-15
BT080227_1(BT080227|pid:none) Caligus clemensi clone ccle-evs-50... 82 2e-14
AK293687_1(AK293687|pid:none) Homo sapiens cDNA FLJ57874 complet... 81 5e-14
CR382134_196(CR382134|pid:none) Debaryomyces hansenii strain CBS... 80 8e-14
AK340035_1(AK340035|pid:none) Acyrthosiphon pisum ACYPI006695 mR... 79 2e-13
BT050285_1(BT050285|pid:none) Salmo salar clone ssal-eve-522-341... 79 2e-13
BT080363_1(BT080363|pid:none) Caligus clemensi clone ccle-evs-50... 79 2e-13
CR925678_189(CR925678|pid:none) Ehrlichia ruminantium str. Welge... 75 2e-12
CR925677_184(CR925677|pid:none) Ehrlichia ruminantium str. Garde... 75 2e-12
AP007255_3950(AP007255|pid:none) Magnetospirillum magneticum AMB... 74 5e-12
(O74882) RecName: Full=Succinate dehydrogenase cytochrome B subu... 73 1e-11
FN357304_23(FN357304|pid:none) Schistosoma mansoni genome sequen... 72 2e-11
CP000497_323(CP000497|pid:none) Pichia stipitis CBS 6054 chromos... 72 3e-11
CR954206_336(CR954206|pid:none) Ostreococcus tauri strain OTTH05... 71 5e-11
CP000544_46(CP000544|pid:none) Halorhodospira halophila SL1, com... 71 5e-11
FM992689_156(FM992689|pid:none) Candida dubliniensis CD36 chromo... 70 1e-10
AE017341_351(AE017341|pid:none) Cryptococcus neoformans var. neo... 70 1e-10
AY812780_1(AY812780|pid:none) Schistosoma japonicum SJCHGC05423 ... 69 1e-10
(Q4UKC1) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 68 3e-10
CU459003_1740(CU459003|pid:none) Magnetospirillum gryphiswaldens... 68 4e-10
AF018287_2(AF018287|pid:none) Papaya bunchy top disease ricketts... 67 7e-10
(Q1RHB5) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 67 1e-09
AB092688_1(AB092688|pid:none) Coprinopsis cinerea FltR gene for ... 66 2e-09
FN392319_1278(FN392319|pid:none) Pichia pastoris GS115 chromosom... 66 2e-09
CP000586_302(CP000586|pid:none) Ostreococcus lucimarinus CCE9901... 65 2e-09
(Q92J99) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 65 2e-09
(P41085) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 65 4e-09
CP000030_196(CP000030|pid:none) Anaplasma marginale str. St. Mar... 65 4e-09
(Q68XP1) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 65 4e-09
CP000766_190(CP000766|pid:none) Rickettsia rickettsii str. Iowa,... 64 5e-09
AY615206_1(AY615206|pid:none) Branchiostoma belcheri tsingtaunes... 64 5e-09
EF463011_15(EF463011|pid:none) Chlorokybus atmophyticus strain S... 64 6e-09
AM494475_1696(AM494475|pid:none) Orientia tsutsugamushi Boryong ... 64 8e-09
CP001227_488(CP001227|pid:none) Rickettsia peacockii str. Rustic... 64 8e-09
CP000490_188(CP000490|pid:none) Paracoccus denitrificans PD1222 ... 63 1e-08
AE017196_1098(AE017196|pid:none) Wolbachia endosymbiont of Droso... 63 1e-08
CP000847_179(CP000847|pid:none) Rickettsia akari str. Hartford, ... 62 2e-08
CP000394_2080(CP000394|pid:none) Granulibacter bethesdensis CGDN... 61 4e-08
CP000697_1852(CP000697|pid:none) Acidiphilium cryptum JF-5, comp... 61 5e-08
(P80481) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 60 9e-08
AE017321_482(AE017321|pid:none) Wolbachia endosymbiont strain TR... 60 9e-08
AE009442_322(AE009442|pid:none) Xylella fastidiosa Temecula1, co... 59 2e-07
X73884_1(X73884|pid:none) S.cerevisiae SDH3 gene for succinate d... 59 2e-07
AY055469_1(AY055469|pid:none) Anaplasma phagocytophilum 16S ribo... 59 2e-07
AM999887_1067(AM999887|pid:none) Wolbachia endosymbiont of Culex... 59 2e-07
CP001011_332(CP001011|pid:none) Xylella fastidiosa M23, complete... 59 2e-07
CR382125_527(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 59 3e-07
CP000613_3855(CP000613|pid:none) Rhodospirillum centenum SW, com... 57 6e-07
(Q04487) RecName: Full=Putative succinate dehydrogenase [ubiquin... 57 6e-07
CP000941_338(CP000941|pid:none) Xylella fastidiosa M12, complete... 57 8e-07
AE016819_440(AE016819|pid:none) Ashbya gossypii (= Eremothecium ... 57 1e-06
AP007167_506(AP007167|pid:none) Aspergillus oryzae RIB40 genomic... 56 1e-06
CP000758_940(CP000758|pid:none) Ochrobactrum anthropi ATCC 49188... 56 1e-06
CP000409_123(CP000409|pid:none) Rickettsia canadensis str. McKie... 56 1e-06
CP000158_3182(CP000158|pid:none) Hyphomonas neptunium ATCC 15444... 56 2e-06
AP009384_3743(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 56 2e-06
CP001111_1535(CP001111|pid:none) Stenotrophomonas maltophilia R5... 55 3e-06
CP000282_2106(CP000282|pid:none) Saccharophagus degradans 2-40, ... 55 4e-06
CP000708_1679(CP000708|pid:none) Brucella ovis ATCC 25840 chromo... 54 5e-06
AM743169_1699(AM743169|pid:none) Stenotrophomonas maltophilia K2... 54 6e-06
AB449813_1(AB449813|pid:none) Aspergillus oryzae AosdhC gene for... 54 6e-06
(P35721) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 54 6e-06
CP000390_3213(CP000390|pid:none) Mesorhizobium sp. BNC1, complet... 54 6e-06
CP000107_189(CP000107|pid:none) Ehrlichia canis str. Jake, compl... 54 8e-06
CU234118_222(CU234118|pid:none) Bradyrhizobium sp. ORS278,comple... 54 8e-06
CP001001_441(CP001001|pid:none) Methylobacterium radiotolerans J... 53 1e-05
AF007569_2(AF007569|pid:none) Bradyrhizobium japonicum GstR (gst... 53 1e-05
AB251495_15(AB251495|pid:none) Physcomitrella patens mitochondri... 53 1e-05
AY267353_45(AY267353|pid:none) Chara vulgaris mitochondrion, com... 53 1e-05
CP001562_1653(CP001562|pid:none) Bartonella grahamii as4aup, com... 53 1e-05
CP000230_1198(CP000230|pid:none) Rhodospirillum rubrum ATCC 1117... 53 1e-05
AB3272(AB3272) succinate dehydrogenase cytochrome b-556 chain [i... 52 2e-05
AM889285_1406(AM889285|pid:none) Gluconacetobacter diazotrophicu... 52 2e-05
CP000463_508(CP000463|pid:none) Rhodopseudomonas palustris BisA5... 52 2e-05
D78157_1(D78157|pid:none) Ascaris suum mRNA for cytochrome b-lar... 52 2e-05
CP001029_4186(CP001029|pid:none) Methylobacterium populi BJ001, ... 52 2e-05
(P80478) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 52 2e-05
AM920437_1426(AM920437|pid:none) Penicillium chrysogenum Wiscons... 52 2e-05
CP001189_2066(CP001189|pid:none) Gluconacetobacter diazotrophicu... 52 3e-05
BA000012_3282(BA000012|pid:none) Mesorhizobium loti MAFF303099 D... 52 3e-05
CP001389_3068(CP001389|pid:none) Rhizobium sp. NGR234, complete ... 51 4e-05
AF494279_6(AF494279|pid:none) Chaetosphaeridium globosum mitocho... 51 4e-05
CP001016_2664(CP001016|pid:none) Beijerinckia indica subsp. indi... 51 5e-05
CP000155_4526(CP000155|pid:none) Hahella chejuensis KCTC 2396, c... 51 5e-05
AM260525_2004(AM260525|pid:none) Bartonella tribocorum CIP 10547... 50 7e-05
CP000319_3442(CP000319|pid:none) Nitrobacter hamburgensis X14, c... 50 7e-05
CP001280_3469(CP001280|pid:none) Methylocella silvestris BL2, co... 50 9e-05
CP000449_2833(CP000449|pid:none) Maricaulis maris MCS10, complet... 50 9e-05
CP000250_326(CP000250|pid:none) Rhodopseudomonas palustris HaA2,... 50 9e-05
CP000661_85(CP000661|pid:none) Rhodobacter sphaeroides ATCC 1702... 50 9e-05
(P41956) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 50 9e-05
CP000109_2028(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 49 2e-04
BX640418_56(BX640418|pid:none) Bordetella pertussis strain Toham... 49 2e-04
CP000143_2589(CP000143|pid:none) Rhodobacter sphaeroides 2.4.1 c... 49 2e-04
CP000628_3280(CP000628|pid:none) Agrobacterium radiobacter K84 c... 49 3e-04
FP236842_2442(FP236842|pid:none) Erwinia pyrifoliae strain Ep1/9... 48 4e-04
AM942759_558(AM942759|pid:none) Proteus mirabilis strain HI4320,... 48 4e-04
(P41955) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 48 4e-04
CP001600_2771(CP001600|pid:none) Edwardsiella ictaluri 93-146, c... 48 4e-04
AY181036_1(AY181036|pid:none) Methylobacterium extorquens succin... 48 5e-04
CP000908_3549(CP000908|pid:none) Methylobacterium extorquens PA1... 48 5e-04
AP006725_1503(AP006725|pid:none) Klebsiella pneumoniae NTUH-K204... 47 6e-04
CP000633_3033(CP000633|pid:none) Agrobacterium vitis S4 chromoso... 47 6e-04
AE009952_3025(AE009952|pid:none) Yersinia pestis KIM, complete g... 47 6e-04
CP000943_5727(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 47 6e-04
CP000781_1952(CP000781|pid:none) Xanthobacter autotrophicus Py2,... 47 8e-04
CR378666_102(CR378666|pid:none) Photobacterium profundum SS9; se... 47 8e-04
CP001349_6933(CP001349|pid:none) Methylobacterium nodulans ORS 2... 47 8e-04
BX897700_1223(BX897700|pid:none) Bartonella quintana str. Toulou... 47 8e-04
CP000304_1837(CP000304|pid:none) Pseudomonas stutzeri A1501, com... 47 0.001
CP001281_2385(CP001281|pid:none) Thauera sp. MZ1T, complete geno... 47 0.001
AY657426_1(AY657426|pid:none) Synthetic construct Peudomonas aer... 47 0.001
AM167904_1177(AM167904|pid:none) Bordetella avium 197N complete ... 47 0.001
CP000089_2836(CP000089|pid:none) Dechloromonas aromatica RCB, co... 47 0.001
AE004091_1583(AE004091|pid:none) Pseudomonas aeruginosa PAO1, co... 47 0.001
AP008232_872(AP008232|pid:none) Sodalis glossinidius str. 'morsi... 46 0.002
CP000774_1430(CP000774|pid:none) Parvibaculum lavamentivorans DS... 46 0.002
AM902716_1828(AM902716|pid:none) Bordetella petrii strain DSM 12... 46 0.002
CP000094_1609(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 45 0.002
CP000285_1203(CP000285|pid:none) Chromohalobacter salexigens DSM... 45 0.002
AE008922_2098(AE008922|pid:none) Xanthomonas campestris pv. camp... 45 0.002
CP000880_2134(CP000880|pid:none) Salmonella enterica subsp. ariz... 45 0.002
AE008923_2040(AE008923|pid:none) Xanthomonas axonopodis pv. citr... 45 0.003
CP000020_812(CP000020|pid:none) Vibrio fischeri ES114 chromosome... 45 0.003
AE016825_1065(AE016825|pid:none) Chromobacterium violaceum ATCC ... 45 0.003
AM181176_1775(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 45 0.003
CP000269_1506(CP000269|pid:none) Janthinobacterium sp. Marseille... 45 0.004
CP000462_1872(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 45 0.004
AE016795_154(AE016795|pid:none) Vibrio vulnificus CMCP6 chromoso... 45 0.004
CP000886_2730(CP000886|pid:none) Salmonella enterica subsp. ente... 45 0.004
CP000680_2488(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 45 0.004
(P48934) RecName: Full=Succinate dehydrogenase cytochrome b560 s... 44 0.005
CP000472_2829(CP000472|pid:none) Shewanella piezotolerans WP3, c... 44 0.005
CP000783_2557(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 44 0.007
AP009240_781(AP009240|pid:none) Escherichia coli SE11 DNA, compl... 44 0.007
CP000133_3840(CP000133|pid:none) Rhizobium etli CFN 42, complete... 44 0.009
CP000653_1213(CP000653|pid:none) Enterobacter sp. 638, complete ... 44 0.009
FM954972_2129(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 44 0.009
A58930(A58930) succinate dehydrogenase cytochrome B560 subunit -... 44 0.009
(P69054) RecName: Full=Succinate dehydrogenase cytochrome b556 s... 44 0.009
CP000800_712(CP000800|pid:none) Escherichia coli E24377A, comple... 44 0.009
AE005674_576(AE005674|pid:none) Shigella flexneri 2a str. 301, c... 44 0.009
CP000931_2474(CP000931|pid:none) Shewanella halifaxensis HAW-EB4... 44 0.009
AE014075_771(AE014075|pid:none) Escherichia coli CFT073, complet... 43 0.011
CU651637_625(CU651637|pid:none) Escherichia coli LF82 chromosome... 43 0.011
CP000441_92(CP000441|pid:none) Burkholderia ambifaria AMMD chrom... 43 0.011
CP000608_117(CP000608|pid:none) Francisella tularensis subsp. tu... 43 0.015
CP001026_717(CP001026|pid:none) Burkholderia ambifaria MC40-6 ch... 43 0.015
AJ749949_72(AJ749949|pid:none) Francisella tularensis subsp. tul... 43 0.015
AM233362_1787(AM233362|pid:none) Francisella tularensis subsp. h... 43 0.015
A82119(A82119) succinate dehydrogenase, cytochrome b556 chain VC... 43 0.015
CP000085_657(CP000085|pid:none) Burkholderia thailandensis E264 ... 43 0.015
CP001281_119(CP001281|pid:none) Thauera sp. MZ1T, complete genome. 43 0.015
CP001277_1694(CP001277|pid:none) Candidatus Hamiltonella defensa... 42 0.020
CT573326_3376(CT573326|pid:none) Pseudomonas entomophila str. L4... 42 0.026
CP000961_1816(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 42 0.026
CP001191_3652(CP001191|pid:none) Rhizobium leguminosarum bv. tri... 42 0.026
AE016853_2156(AE016853|pid:none) Pseudomonas syringae pv. tomato... 42 0.026
AP009387_321(AP009387|pid:none) Burkholderia multivorans ATCC 17... 42 0.033
AM236080_4445(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 42 0.033
CP000243_700(CP000243|pid:none) Escherichia coli UTI89, complete... 42 0.033
CP001053_2774(CP001053|pid:none) Burkholderia phytofirmans PsJN ... 42 0.033
CU928161_714(CU928161|pid:none) Escherichia coli S88 chromosome,... 42 0.033
AF362730_1(AF362730|pid:none) Lycopersicon esculentum succinate ... 42 0.033
AC124969_6(AC124969|pid:none) Medicago truncatula clone mth2-15o... 42 0.033
AM747721_971(AM747721|pid:none) Burkholderia cenocepacia J2315 c... 41 0.044
F97676(F97676)succinate dehydrogenase membrane anchor chain (AF0... 41 0.044
BX571966_1751(BX571966|pid:none) Burkholderia pseudomallei strai... 41 0.044
BA000021_423(BA000021|pid:none) Wigglesworthia glossinidia endos... 41 0.057
AY814844_1(AY814844|pid:none) Schistosoma japonicum SJCHGC03139 ... 41 0.057
CP000563_2475(CP000563|pid:none) Shewanella baltica OS155, compl... 40 0.074
CP000821_2812(CP000821|pid:none) Shewanella sediminis HAW-EB3, c... 40 0.074
CP000075_2004(CP000075|pid:none) Pseudomonas syringae pv. syring... 40 0.074
CP000753_2476(CP000753|pid:none) Shewanella baltica OS185, compl... 40 0.097
CP001504_740(CP001504|pid:none) Burkholderia glumae BGR1 chromos... 40 0.13
CP000891_2618(CP000891|pid:none) Shewanella baltica OS195, compl... 40 0.13
AP009386_668(AP009386|pid:none) Burkholderia multivorans ATCC 17... 40 0.13
CP000606_1645(CP000606|pid:none) Shewanella loihica PV-4, comple... 40 0.13
CP000615_1074(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 39 0.17
AE017354_516(AE017354|pid:none) Legionella pneumophila subsp. pn... 39 0.17
CP000447_2330(CP000447|pid:none) Shewanella frigidimarina NCIMB ... 39 0.22
AE014299_1891(AE014299|pid:none) Shewanella oneidensis MR-1, com... 39 0.22
CP000494_219(CP000494|pid:none) Bradyrhizobium sp. BTAi1, comple... 39 0.22
CP000713_256(CP000713|pid:none) Psychrobacter sp. PRwf-1, comple... 39 0.28
CP001339_1444(CP001339|pid:none) Thioalkalivibrio sp. HL-EbGR7, ... 39 0.28
CP000271_132(CP000271|pid:none) Burkholderia xenovorans LB400 ch... 39 0.28
CP000927_4822(CP000927|pid:none) Caulobacter sp. K31, complete g... 39 0.28
CP000388_1783(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 39 0.28
CP000444_1693(CP000444|pid:none) Shewanella sp. MR-7, complete g... 39 0.28
CR954246_1610(CR954246|pid:none) Pseudoalteromonas haloplanktis ... 38 0.37
CP000675_626(CP000675|pid:none) Legionella pneumophila str. Corb... 38 0.37
CP000547_493(CP000547|pid:none) Burkholderia mallei NCTC 10247 c... 38 0.48
AE017340_1501(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 38 0.48
CP000507_1418(CP000507|pid:none) Shewanella amazonensis SB2B, co... 38 0.48
CP001068_2118(CP001068|pid:none) Ralstonia pickettii 12J chromos... 36 1.4
CP001069_575(CP001069|pid:none) Ralstonia pickettii 12J chromoso... 36 1.4
CP000323_107(CP000323|pid:none) Psychrobacter cryohalolentis K5,... 36 1.8
CP000133_679(CP000133|pid:none) Rhizobium etli CFN 42, complete ... 36 1.8
BT068258_1(BT068258|pid:none) Zea mays full-length cDNA clone ZM... 36 1.8
CP000084_241(CP000084|pid:none) Candidatus Pelagibacter ubique H... 35 2.4
Y13760_1(Y13760|pid:none) Shewanella frigidimarina NCIMB400 sdhA... 35 2.4
AL646052_1995(AL646052|pid:none) Ralstonia solanacearum GMI1000 ... 35 2.4
CP000884_2418(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 35 3.1
FN392320_1010(FN392320|pid:none) Pichia pastoris GS115 chromosom... 35 4.1
CP000431_5583(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 34 5.3
CU695239_306(CU695239|pid:none) Ralstonia solanacearum strain Mo... 34 5.3
FN359280_2(FN359280|pid:none) Schistosoma mansoni genome sequenc... 34 7.0
CP000116_1182(CP000116|pid:none) Thiobacillus denitrificans ATCC... 34 7.0
CP000733_549(CP000733|pid:none) Coxiella burnetii Dugway 5J108-1... 33 9.1
AP011115_5703(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 33 9.1
AM428625_2(AM428625|pid:none) Vitis vinifera contig VV78X048623.... 33 9.1
CR555306_2589(CR555306|pid:none) Azoarcus sp. EbN1 complete geno... 33 9.1
>(Q8T2T5) RecName: Full=Succinate dehydrogenase cytochrome b560
subunit, mitochondrial; Flags: Precursor;
&AC116305_108(AC116305|pid:none)
Length = 192
Score = 386 bits (991), Expect = e-106
Identities = 192/192 (100%), Positives = 192/192 (100%)
Frame = +2
Query: 71 MFGRTLNTFTSRNAPLVRNFDKFIVNNTLTSKNIYLSQTNTTNTPLSYSTQAKKPFTITE 250
MFGRTLNTFTSRNAPLVRNFDKFIVNNTLTSKNIYLSQTNTTNTPLSYSTQAKKPFTITE
Sbjct: 1 MFGRTLNTFTSRNAPLVRNFDKFIVNNTLTSKNIYLSQTNTTNTPLSYSTQAKKPFTITE 60
Query: 251 KRIDELKTPYQPTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTLFAPHDAIHY 430
KRIDELKTPYQPTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTLFAPHDAIHY
Sbjct: 61 KRIDELKTPYQPTSPHLTIYKFPLPAVMSIMHRATGICLALGITGLAGVTLFAPHDAIHY 120
Query: 431 IQLLHTQYPALVYPAKFAVALPLTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVA 610
IQLLHTQYPALVYPAKFAVALPLTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVA
Sbjct: 121 IQLLHTQYPALVYPAKFAVALPLTYHFCTGVRHIIWDETVKGLSISQIESSGKVLLAVVA 180
Query: 611 VLSTIFTFVSFK 646
VLSTIFTFVSFK
Sbjct: 181 VLSTIFTFVSFK 192
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,229,761,427
Number of extensions: 23579199
Number of successful extensions: 58136
Number of sequences better than 10.0: 233
Number of HSP's gapped: 57864
Number of HSP's successfully gapped: 233
Length of query: 282
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 155
Effective length of database: 640,137,871
Effective search space: 99221370005
Effective search space used: 99221370005
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
3 |
| VH (FL, L) |
1 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
3 |
| SH (FL, L) |
1 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |