Contig-U14412-1 |
Contig ID |
Contig-U14412-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
111 |
Chromosome number (1..6, M) |
- |
Chromosome length |
- |
Start point |
- |
End point |
- |
Strand (PLUS/MINUS) |
- |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14412 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.21 |
Homology vs DNA |
Query= Contig-U14412-1 (Contig-U14412-1Q) /CSM_Contig/Contig-U14412-1Q.Seq.d (111 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ384144) Dictyostelium discoideum cDNA clone:ddc48m08, 3' ... 76 2e-10 1 (EK416657) 1095515468060 Global-Ocean-Sampling_GS-31-01-01-1... 48 0.056 1 (CZ943535) 314564 Tomato EcoRI BAC Library Solanum lycopersi... 48 0.056 1 (EA333177) Sequence 5669 from patent US 7306913. 44 0.88 1 (U62631) Human B-cell receptor CD22-B isoform and alternativ... 44 0.88 1 (S61408) CD22 [human, Genomic, 3650 nt, segment 1 of 15]. 44 0.88 1 (AC002132) Human DNA from chromosome 19 cosmid F24108 contai... 44 0.88 1 (AC132780) Rattus norvegicus clone CH230-74L18, WORKING DRAF... 44 0.88 1 (AC126127) Rattus norvegicus clone CH230-117D20, WORKING DRA... 44 0.88 1 (AC179534) Strongylocentrotus purpuratus clone R3-1035A8, WO... 44 0.88 1 (FH401158) CHO_OF4827xo15f1.ab1 CHO_OF4 Nicotiana tabacum ge... 44 0.88 1 (EK035959) 1092959452821 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.88 1 (EK027634) 1092955381975 Global-Ocean-Sampling_GS-31-01-01-1... 44 0.88 1 (DX573750) Phaseolus-Bat-7_02_F05.F Phaseolus-Bat-7 Phaseolu... 44 0.88 1 (DY322773) OB_EEa03E05.f OB_EEa Ocimum basilicum cDNA clone ... 44 0.88 1 (DW498149) GH_TMIRS_023_B10_F Cotton Normalized Library dT p... 44 0.88 1 (AM180355) Clostridium difficile 630 complete genome. 44 0.88 1 (AF288092) Naegleria gruberi mitochondrial DNA, complete gen... 40 0.91 2 (BX004851) Mouse DNA sequence from clone RP23-451H12 on chro... 38 1.7 2 (AC160263) Bos taurus clone CH240-87E23, WORKING DRAFT SEQUE... 40 2.7 2 (AC182938) Bos taurus clone CH240-307F9, WORKING DRAFT SEQUE... 40 2.9 2 (CU570993) Zebrafish DNA sequence from clone DKEYP-88C1 in l... 42 3.5 1 (CT955987) Zebrafish DNA sequence from clone DKEYP-87D7 in l... 42 3.5 1 (AL158281) H.sapiens STS from flow-sorted chromosome X rando... 42 3.5 1 (AL683877) Mouse DNA sequence from clone RP23-120P2 on chrom... 42 3.5 1 (AC160765) Mus musculus BAC clone RP23-26O24 from chromosome... 42 3.5 1 (AC192974) Pan troglodytes BAC clone CH251-628O2 from chromo... 42 3.5 1 (AC192483) Pan troglodytes BAC clone CH251-305A24 from chrom... 42 3.5 1 (AC147273) Pan troglodytes BAC clone RP43-116B18 from chromo... 42 3.5 1 (AM472706) Vitis vinifera contig VV78X005065.4, whole genome... 42 3.5 1 (AM464543) Vitis vinifera contig VV78X112680.5, whole genome... 42 3.5 1 (AM440415) Vitis vinifera, whole genome shotgun sequence, co... 42 3.5 1 (AC209222) Populus trichocarpa clone POP017-E23, complete se... 42 3.5 1 (DD159156) NOVEL COMPOSITIONS AND METHODS FOR CANCER. 42 3.5 1 (CS374577) Sequence 680 from Patent WO2006034879. 42 3.5 1 (CS374305) Sequence 408 from Patent WO2006034879. 42 3.5 1 (AX695614) Sequence 1241 from Patent WO03008583. 42 3.5 1 (AX349166) Sequence 92 from Patent WO0202808. 42 3.5 1 (AX347445) Sequence 92 from Patent WO0200705. 42 3.5 1 (AX345293) Sequence 364 from Patent WO0200928. 42 3.5 1 (AC006614) Caenorhabditis elegans cosmid C34H3, complete seq... 42 3.5 1 (AL133274) Human DNA sequence from clone RP13-94P8 on chromo... 42 3.5 1 (AC012067) Homo sapiens BAC clone RP11-192N14 from Y, comple... 42 3.5 1 (AC004029) Human BAC clone CTB-35E18 from 7q31, complete seq... 42 3.5 1 (AC124035) Rattus norvegicus clone CH230-379N2, *** SEQUENCI... 42 3.5 1 (AC117795) Mus musculus chromosome 13 clone RP24-553A6 map 1... 42 3.5 1 (AC113648) Rattus norvegicus clone CH230-359I16, *** SEQUENC... 42 3.5 1 (AC111965) Rattus norvegicus clone CH230-185I9, WORKING DRAF... 42 3.5 1 (AC098987) Rattus norvegicus clone CH230-53F13, WORKING DRAF... 42 3.5 1 (CU467940) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 3.5 1 (CT573164) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 3.5 1 (AC203748) Zea mays chromosome 9 clone CH201-333H5; ZMMBBc03... 42 3.5 1 (AC197514) Pan troglodytes chromosome 7 clone CH251-566F6, W... 42 3.5 1 (AC164379) Bos taurus clone CH240-150I18, *** SEQUENCING IN ... 42 3.5 1 (AK156750) Mus musculus activated spleen cDNA, RIKEN full-le... 42 3.5 1 (FI041057) CHO_OF6465xn19f1.ab1 CHO_OF6 Nicotiana tabacum ge... 42 3.5 1 (FH539753) CHO_OF4769xn01r1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.5 1 (FH514896) CHO_OF4710xd24f1.ab1 CHO_OF4 Nicotiana tabacum ge... 42 3.5 1 (FH258661) CHO_OF3365xm21r1.ab1 CHO_OF3 Nicotiana tabacum ge... 42 3.5 1 (ET840595) CHO_OF893xe03f1.ab1 CHO_OF Nicotiana tabacum geno... 42 3.5 1 (EK585979) 1095522075774 Global-Ocean-Sampling_GS-32-01-01-1... 42 3.5 1 (EJ913313) 1093018547620 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.5 1 (EJ871987) 1093018351300 Global-Ocean-Sampling_GS-30-02-01-1... 42 3.5 1 (DU761634) ASNG3799.g2 HF200_10-06-02 uncultured marine micr... 42 3.5 1 (DH110056) Oryzias latipes Fosmid clone:GOLWFno367_p05, forw... 42 3.5 1 (DH101773) Oryzias latipes Fosmid clone:GOLWFno348_h15, reve... 42 3.5 1 (DE888076) Macropus eugenii DNA, BAC clone: MEB1-063J18_R, 3... 42 3.5 1 (DE127956) Oryzias latipes DNA, forward end of BAC clone: Md... 42 3.5 1 (CL906701) OA_ABa0005F01.r OA_ABa Oryza australiensis genomi... 42 3.5 1 (EC760305) PSE00007419 rw_mgpallid Polysphondylium pallidum ... 42 3.5 1 (EC745169) PSE00000395 rw_mgpallid Polysphondylium pallidum ... 42 3.5 1 (CB591981) AGENCOURT_13044117 NICHD_XGC_Te1 Xenopus laevis c... 42 3.5 1 (CB281741) ru56h06.y1 Heterodera glycines J4 Heterodera glyc... 42 3.5 1 (CB278852) ru29c10.y1 Heterodera glycines J4 Heterodera glyc... 42 3.5 1 (CB199424) AGENCOURT_11211380 NICHD_XGC_Tad2 Xenopus laevis ... 42 3.5 1 (BQ505819) EST613234 Generation of a set of potato cDNA clon... 42 3.5 1 (BG844590) 1024007A06.x1 C. reinhardtii CC-1690, normalized,... 42 3.5 1 (BG594555) EST493233 cSTS Solanum tuberosum cDNA clone cSTS7... 42 3.5 1 (BF670242) 602121614F1 NIH_MGC_56 Homo sapiens cDNA clone IM... 42 3.5 1 (BF014047) ro16e12.y1 Heterodera glycines J2 SL1 Topo1 Kloek... 42 3.5 1 (BF013596) ro09g06.y1 Heterodera glycines J2 SL1 Topo1 Kloek... 42 3.5 1 (CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 42 3.5 1 (CP000084) Candidatus Pelagibacter ubique HTCC1062, complete... 42 3.5 1 (BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ... 42 3.5 1 (AC097724) Homo sapiens BAC clone RP11-713D19 from 2, comple... 40 5.8 2 (AC180045) Strongylocentrotus purpuratus clone R3-25D13, WOR... 30 6.3 2 (AC176880) Strongylocentrotus purpuratus clone R3-1110D12, W... 30 6.5 2 (AP002742) Homo sapiens genomic DNA, chromosome 4q22-q24, cl... 38 8.2 2 (AC016078) Homo sapiens clone RP11-23K3, WORKING DRAFT SEQUE... 38 9.2 2 (AC022076) Homo sapiens chromosome 3 clone RP11-34L7, WORKIN... 40 9.5 2
>(BJ384144) Dictyostelium discoideum cDNA clone:ddc48m08, 3' end, single read. Length = 102
Score = 75.8 bits (38), Expect = 2e-10 Identities = 38/38 (100%) Strand = Plus / Minus
Query: 74 ttgtttcatttgaaacaaataaaataataaactaactt 111 |||||||||||||||||||||||||||||||||||||| Sbjct: 39 ttgtttcatttgaaacaaataaaataataaactaactt 2
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 86,885,106 Number of extensions: 9302257 Number of successful extensions: 2468129 Number of sequences better than 10.0: 90 Length of query: 111 Length of database: 95,242,211,685 Length adjustment: 22 Effective length of query: 89 Effective length of database: 93,199,600,587 Effective search space: 8294764452243 Effective search space used: 8294764452243 X1: 11 (21.8 bits) S2: 20 (40.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |