Contig-U02644-1 |
Contig ID |
Contig-U02644-1 |
Contig update |
2002. 9.13 |
Contig sequence |
|
Gap |
no gap |
Contig length |
178 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
5841774 |
End point |
5841596 |
Strand (PLUS/MINUS) |
MINUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U02644 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6. 9 |
Homology vs CSM-cDNA |
|
dna update |
2005. 3.18 |
Homology vs DNA |
Query= Contig-U02644-1 (Contig-U02644-1Q) /CSM_Contig/Contig-U02644-1Q.Seq.d (178 letters)
Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq; ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq; ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq; ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq; ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq; ddbjhum9.seq; /db/DDBJNEW.DATA/b/new_ddbjhum.seq; ddbjpri.seq; /db/DDBJNEW.DATA/b/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq; ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq; ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq; ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/b/new_ddbjrod.seq; ddbjmam.seq; /db/DDBJNEW.DATA/b/new_ddbjmam.seq; ddbjvrt1.seq; ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq; /db/DDBJNEW.DATA/b/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq; ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq; /db/DDBJNEW.DATA/b/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq; ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq; ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq; /db/DDBJNEW.DATA/b/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq; ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq; ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/b/new_ddbjbct.seq; ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq; /db/DDBJNEW.DATA/b/new_ddbjvrl.seq; ddbjphg.seq; /db/DDBJNEW.DATA/b/new_ddbjphg.seq; ddbjuna.seq; /db/DDBJNEW.DATA/b/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq; ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq; ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq; ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq; ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq; ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq; ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq; ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq; ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq; ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq; ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq; ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq; ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq; ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq; ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq; ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq; ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq; ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq; ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq; ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq; ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq; ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq; ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq; ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq; ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq; ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq; /db/DDBJNEW.DATA/b/new_ddbjgss1.seq; /db/DDBJNEW.DATA/b/new_ddbjgss2.seq; /db/DDBJNEW.DATA/b/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq; ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq; ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq; ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq; ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq; ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq; ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq; ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq; ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq; ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq; ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq; ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq; ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq; /db/DDBJNEW.DATA/b/new_ddbjhtg1.seq; /db/DDBJNEW.DATA/b/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq; ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq; ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq; ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq; ddbjpat9.seq; /db/DDBJNEW.DATA/b/new_ddbjpat.seq; ddbjsts1.seq; ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq; /db/DDBJNEW.DATA/b/new_ddbjsts.seq; ddbjsyn.seq; /db/DDBJNEW.DATA/b/new_ddbjsyn.seq; est_atha1.seq; /db/DDBJNEW.DATA/b/new_est_atha1.seq; est_cele1.seq; est_drer1.seq; /db/DDBJNEW.DATA/b/new_est_drer1.seq; est_dmel1.seq; /db/DDBJNEW.DATA/b/new_est_dmel1.seq; est_gmax1.seq; /db/DDBJNEW.DATA/b/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq; est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/b/new_est_hum1.seq; est_lesc1.seq; /db/DDBJNEW.DATA/b/new_est_lesc1.seq; est_mous1.seq; est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/b/new_est_mous1.seq; est_osat1.seq; /db/DDBJNEW.DATA/b/new_est_osat1.seq; est_rnor1.seq; /db/DDBJNEW.DATA/b/new_est_rnor1.seq; est_xlae1.seq; /db/DDBJNEW.DATA/b/new_est_xlae1.seq; est_zmay1.seq; /db/DDBJNEW.DATA/b/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq; est_rest3.seq; est_rest4.seq; est_rest5.seq; /db/DDBJNEW.DATA/b/new_est_rest1.seq; /db/DDBJNEW.DATA/b/new_est_rest2.seq 39,953,378 sequences; ],318,265,086 total letters
Searching...................................................done
Score E Sequences producing significant alignments: (bits) Value N
AC068469|AC068469.1 Homo sapiens chromosome 2 clone RP11-83H... 38 0.031 2 AC150070|AC150070.1 Gallus gallus clone CH261-85F10, WORKING... 44 0.73 1 AC150195|AC150195.1 Gallus gallus clone WAG-113C22, WORKING ... 44 0.73 1 CR387087|CR387087.1 Gallus gallus finished cDNA, clone ChEST... 44 0.73 1 BE375922|BE375922.1 601229544F1 NCI_CGAP_Mam1 Mus musculus c... 44 0.73 1 CR848002|CR848002.8 Zebrafish DNA sequence *** SEQUENCING IN... 40 0.98 2 DD010736|DD010736.1 Diagnosis of known genetic Parameters wi... 40 1.2 2 AX344565|AX344565.1 Sequence 16 from Patent WO0200932. 40 1.4 2 CK799157|CK799157.1 AGENCOURT_18790984 NICHD_XGC_Te2N Xenopu... 42 2.9 1 AC147554|AC147554.2 Mus musculus BAC clone RP24-274B6 from c... 42 2.9 1 CN327292|CN327292.1 AGENCOURT_22007731 NICHD_XGC_Te2N Xenopu... 42 2.9 1 AL590665|AL590665.9 Human DNA sequence from clone RP11-229H1... 42 2.9 1 CN319430|CN319430.1 AGENCOURT_22007728 NICHD_XGC_Te2N Xenopu... 42 2.9 1 AC034266|AC034266.3 Homo sapiens chromosome 17 clone RP11-68... 42 2.9 1 AX344818|AX344818.1 Sequence 243 from Patent WO0200927. 42 2.9 1 AG248883|AG248883.1 Lotus corniculatus var. japonicus DNA, c... 42 2.9 1 AC005939|AC005939.1 Homo sapiens chromosome 17, clone hRPK.4... 42 2.9 1 BX890575|BX890575.23 Zebrafish DNA sequence from clone CH211... 42 2.9 1 AG321387|AG321387.1 Mus musculus molossinus DNA, clone:MSMg0... 42 2.9 1 BP114631|BP114631.1 Plasmodium berghei strain ANKA cDNA, clo... 34 3.6 2 CL202641|CL202641.1 ZMMBBb0566D12r ZMMBBb (HindIII) Zea mays... 38 6.1 2 AL021332|AL021332.1 Human DNA sequence from clone RP3-398A12... 36 7.7 2 AC130801|AC130801.16 Medicago truncatula clone mth2-12p19, c... 40 9.8 2 CR812482|CR812482.3 Zebrafish DNA sequence *** SEQUENCING IN... 40 11 1 AC147358|AC147358.2 Xenopus tropicalis clone CH216-71J8, com... 40 11 1 AL844507|AL844507.1 Plasmodium falciparum chromosome 8. 40 11 1 AC155979|AC155979.1 Xenopus tropicalis clone CH216-64G21, WO... 40 11 1 AC147893|AC147893.2 Xenopus tropicalis clone CH216-36J13, co... 40 11 1 CA788247|CA788247.1 AGENCOURT_11030746 NICHD_XGC_OO1 Xenopus... 40 11 1 BJ091802|BJ091802.1 Xenopus laevis cDNA clone:XL090a10, 3' e... 40 11 1 CR443180|CR443180.1 Xenopus tropicalis EST, clone TTbA032c09... 40 11 1 CB197146|CB197146.2 AGENCOURT_11245297 NICHD_XGC_Tad2 Xenopu... 40 11 1 BP673264|BP673264.2 Xenopus laevis NBRP cDNA clone:XL413e05e... 40 11 1 AC022646|AC022646.3 Homo sapiens clone RP11-28C18, WORKING D... 40 11 1 CL129010|CL129010.1 ISB1-95L3_Sp6.1 ISB1 Xenopus tropicalis ... 40 11 1 CC817755|CC817755.1 1O0003D13R Oxytricha plasmid UUGC1O libr... 40 11 1 BZ695565|BZ695565.1 SP__Ba0065J13.f SP__Ba Sorghum propinquu... 40 11 1 AC090845|AC090845.1 Homo sapiens chromosome 18 clone RP11-73... 40 11 1 AY190950|AY190950.1 Drosophila willistoni clone DWIF01_1_E5 ... 40 11 1 BC084770|BC084770.1 Xenopus laevis hypothetical LOC495310, m... 40 11 1 BC060755|BC060755.1 Xenopus laevis hypothetical protein MGC6... 40 11 1 CX839958|CX839958.1 JGI_CAAK9182.rev NIH_XGC_tropBrn3 Xenopu... 40 11 1 CX441246|CX441246.1 JGI_XZG60462.rev NIH_XGC_tropGas7 Xenopu... 40 11 1 CX324122|CX324122.1 JGI_XZT71539.fwd NIH_XGC_tropTad5 Xenopu... 40 11 1 BE507215|BE507215.1 db92e11.y1 Wellcome CRC pSK animal cap X... 40 11 1 CD326343|CD326343.1 AGENCOURT_14149941 NICHD_XGC_Eye1 Xenopu... 40 11 1 AP002003|AP002003.3 Homo sapiens genomic DNA, chromosome 11q... 40 11 1 CL131428|CL131428.1 ISB1-99J19_T7.1 ISB1 Xenopus tropicalis ... 40 11 1 CL128889|CL128889.1 ISB1-95G22_Sp6.1 ISB1 Xenopus tropicalis... 40 11 1 AC148456|AC148456.2 Xenopus tropicalis clone CH216-168B18, c... 40 11 1 X83674|X83674.1 X.laevis SSB2 gene. 40 11 1 CX826703|CX826703.1 JGI_CAAK5295.rev NIH_XGC_tropBrn3 Xenopu... 40 11 1 AL648940|AL648940.2 Xenopus tropicalis EST, clone TGas033d14... 40 11 1 BP720915|BP720915.1 Xenopus laevis NBRP cDNA clone:XL447m18e... 40 11 1 BJ037510|BJ037510.1 Xenopus laevis cDNA clone:XL040l19, 5' e... 40 11 1 AC149515|AC149515.1 Xenopus tropicalis clone CH216-35C7, WOR... 40 11 1 AC011127|AC011127.6 Homo sapiens chromosome 18 clone RP11-11... 40 11 1 AG390233|AG390233.1 Mus musculus molossinus DNA, clone:MSMg0... 40 11 1 BC089150|BC089150.1 Xenopus laevis cDNA clone MGC:85050 IMAG... 40 11 1 CX814932|CX814932.1 JGI_CAAK702.rev NIH_XGC_tropBrn3 Xenopus... 40 11 1 CX358409|CX358409.1 JGI_XZT9.fwd NIH_XGC_tropTad5 Xenopus tr... 40 11 1 CR565905|CR565905.1 Xenopus tropicalis EST, clone THdA013o06... 40 11 1 BX692974|BX692974.1 Xenopus tropicalis EST, clone TNeu097i21... 40 11 1 AW640057|AW640057.1 bl90e07.w1 Blackshear/Soares normalized ... 40 11 1 CK805901|CK805901.1 AGENCOURT_19144481 NICHD_XGC_Te2 Xenopus... 40 11 1 DD010735|DD010735.1 Diagnosis of known genetic Parameters wi... 40 11 1 AC148993|AC148993.1 frog geminen, complete sequence. 40 11 1 CX378146|CX378146.1 JGI_XZT35059.fwd NIH_XGC_tropTad5 Xenopu... 40 11 1 AL629280|AL629280.1 Xenopus tropicalis EST, clone TGas012m17... 40 11 1 BP713532|BP713532.1 Xenopus laevis NBRP cDNA clone:XL421d19e... 40 11 1 CQ807275|CQ807275.1 Sequence 725 from Patent WO2004035803. 40 11 1 CQ807001|CQ807001.1 Sequence 451 from Patent WO2004035803. 40 11 1 CL143415|CL143415.1 ISB1-122L16_Sp6.1 ISB1 Xenopus tropicali... 40 11 1 CL056685|CL056685.1 CH216-83H24_RM1.1 CH216 Xenopus tropical... 40 11 1 CC241284|CC241284.1 CH261-141I18_RM1.1 CH261 Gallus gallus g... 40 11 1 AL928930|AL928930.9 Mouse DNA sequence from clone RP23-386P7... 40 11 1 AP002002|AP002002.4 Homo sapiens genomic DNA, chromosome 11q... 40 11 1 CX800577|CX800577.1 JGI_CAAJ14478.rev NIH_XGC_tropBrn2 Xenop... 40 11 1 CV830273|CV830273.1 ID0ACC15AC09RM1 ID0ACC Acyrthosiphon pis... 40 11 1 BJ626009|BJ626009.1 Xenopus laevis cDNA clone:XL213g02, 5' end. 40 11 1 BX901898|BX901898.11 Zebrafish DNA sequence *** SEQUENCING I... 40 11 1 AC145790|AC145790.1 Xenopus tropicalis clone CH216-12L5, WOR... 40 11 1 AC107046|AC107046.3 Mus musculus clone RP23-321F12, WORKING ... 40 11 1 X83673|X83673.1 X.laevis SSB1 gene. 40 11 1 AL887676|AL887676.2 Xenopus tropicalis EST, clone TEgg082c07... 40 11 1 BX740548|BX740548.1 Xenopus tropicalis EST, clone TTpA039a24... 40 11 1 BX850730|BX850730.1 RZPD Xenopus laevis cDNA clone IMAGp998P... 40 11 1 BJ622366|BJ622366.1 Xenopus laevis cDNA clone:XL200l15, 5' end. 40 11 1 BG394598|BG394598.1 602456740F1 NIH_MGC_16 Homo sapiens cDNA... 40 11 1 AX344564|AX344564.1 Sequence 15 from Patent WO0200932. 40 11 1 AX344560|AX344560.1 Sequence 11 from Patent WO0200932. 40 11 1 AX344554|AX344554.1 Sequence 5 from Patent WO0200932. 40 11 1 AC157721|AC157721.1 Xenopus tropicalis clone ISB1-273N16, WO... 40 11 1 AC151468|AC151468.2 Xenopus tropicalis BAC clone ISB-42G17 c... 40 11 1 AC150447|AC150447.2 Xenopus tropicalis clone CH216-77E13, WO... 40 11 1 CL080150|CL080150.1 CH216-157L3_Sp5.1 CH216 Xenopus tropical... 40 11 1 AL645729|AL645729.14 Human DNA sequence from clone RP11-318E... 40 11 1 BU900557|BU900557.1 AGENCOURT_10207950 NICHD_XGC_Ov1 Xenopus... 40 11 1 BP676204|BP676204.1 Xenopus laevis NBRP cDNA clone:XL421d19e... 40 11 1 BJ624873|BJ624873.1 Xenopus laevis cDNA clone:XL209n08, 5' end. 40 11 1
>AC068469|AC068469.1 Homo sapiens chromosome 2 clone RP11-83H15 map 2, LOW-PASS SEQUENCE SAMPLING. Length = 62320
Score = 38.2 bits (19), Expect(2) = 0.031 Identities = 22/23 (95%) Strand = Plus / Minus
Query: 22 aaaaaacacaaataataaaataa 44 |||||||||||| |||||||||| Sbjct: 10479 aaaaaacacaaaaaataaaataa 10457
Score = 38.2 bits (19), Expect(2) = 0.031 Identities = 22/23 (95%) Strand = Plus / Plus
Query: 22 aaaaaacacaaataataaaataa 44 |||||||||||| |||||||||| Sbjct: 4955 aaaaaacacaaaaaataaaataa 4977
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Hits to DB: 2,578,700 Number of Sequences: 39953378 Number of extensions: 2578700 Number of successful extensions: 862547 Number of sequences better than 10.0: 337 length of query: 178 length of database: ],318,265,086 effective HSP length: 22 effective length of query: 156 effective length of database: \,439,290,770 effective search space: 6932529360120 effective search space used: 6932529360120 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits) [blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit
ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.
|
protein update |
2009. 7.19 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
1 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
0 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |