Contig-U14406-1
Contig ID Contig-U14406-1
Contig update 2002.12.18
Contig sequence
>Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Contig-U14406-1Q.Seq.d
AAAAAAANCCCAAAAAAAANNNTTTTTTTTTTTTAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTT
TTNNTTTTTTNNAAAAAAAAAAAANNNTTNNNNAAAAAANNNNNNNNN

Gap no gap
Contig length 148
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U14406
List of clone(s)

est1=CHM744F,1,139
Translated Amino Acid sequence
KKXQKKXFFFFKKKKKKKKKKKKKKKKKKKKKFXXFXKKKKXXXKKXXX


Translated Amino Acid sequence (All Frames)
Frame A:
kkxpkkxxfff*kkkkkkkkkkkkkkkkkkkkifxfxxkkkxxxxkxxx


Frame B:
KKXQKKXFFFFKKKKKKKKKKKKKKKKKKKKKFXXFXKKKKXXXKKXXX


Frame C:
kxpkkxxffflkkkkkkkkkkkkkkkkkkkknfxffxkkkxxxxkxxx


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14406-1 (Contig-U14406-1Q)
/CSM_Contig/Contig-U14406-1Q.Seq.d
(148 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Conti... 44 4e-05
Contig-U14424-1 (Contig-U14424-1Q) /CSM_Contig/Conti... 38 0.002
Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Conti... 38 0.002
Contig-U14614-1 (Contig-U14614-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U14606-1 (Contig-U14606-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U14582-1 (Contig-U14582-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U14565-1 (Contig-U14565-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U14311-1 (Contig-U14311-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U13147-1 (Contig-U13147-1Q) /CSM_Contig/Conti... 34 0.038
Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Conti... 28 2.3

>Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Contig-U14406-1Q.Seq.d
Length = 148

Score = 44.1 bits (22), Expect = 4e-05
Identities = 34/34 (100%)
Strand = Plus / Plus


Query: 1 aaaaaaancccaaaaaaaannntttttttttttt 34
||||||||||||||||||||||||||||||||||
Sbjct: 1 aaaaaaancccaaaaaaaannntttttttttttt 34


>Contig-U14424-1 (Contig-U14424-1Q) /CSM_Contig/Contig-U14424-1Q.Seq.d
Length = 129

Score = 38.2 bits (19), Expect = 0.002
Identities = 30/34 (88%)
Strand = Plus / Plus


Query: 1 aaaaaaancccaaaaaaaannntttttttttttt 34
||||||| ||| ||||||| | ||||||||||||
Sbjct: 1 aaaaaaaccccnaaaaaaaanttttttttttttt 34


Score = 30.2 bits (15), Expect = 0.59
Identities = 29/34 (85%)
Strand = Plus / Plus


Query: 1 aaaaaaancccaaaaaaaannntttttttttttt 34
|||||| || ||||||||| ||||||||||||
Sbjct: 2 aaaaaaccccnaaaaaaaantttttttttttttt 35


Score = 28.2 bits (14), Expect = 2.3
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 12 aaaaaaaannntttttttttttt 34
|||||||| | ||||||||||||
Sbjct: 88 aaaaaaaacnttttttttttttt 110


Score = 28.2 bits (14), Expect = 2.3
Identities = 21/23 (91%)
Strand = Plus / Minus


Query: 12 aaaaaaaannntttttttttttt 34
|||||||| | ||||||||||||
Sbjct: 106 aaaaaaaaangtttttttttttt 84


Score = 28.2 bits (14), Expect = 2.3
Identities = 21/23 (91%)
Strand = Plus / Minus


Query: 12 aaaaaaaannntttttttttttt 34
||||||||| ||||||||||||
Sbjct: 105 aaaaaaaangttttttttttttt 83


Score = 28.2 bits (14), Expect = 2.3
Identities = 21/23 (91%)
Strand = Plus / Plus


Query: 12 aaaaaaaannntttttttttttt 34
|||||||| |||||||||||||
Sbjct: 87 aaaaaaaaacntttttttttttt 109


>Contig-U13253-1 (Contig-U13253-1Q) /CSM_Contig/Contig-U13253-1Q.Seq.d
Length = 147

Score = 38.2 bits (19), Expect = 0.002
Identities = 33/34 (97%)
Strand = Plus / Plus


Query: 1 aaaaaaancccaaaaaaaannntttttttttttt 34
|||||||||||||||||| |||||||||||||||
Sbjct: 2 aaaaaaancccaaaaaaannnntttttttttttt 35


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,163
Number of Sequences: 6905
Number of extensions: 72163
Number of successful extensions: 56642
Number of sequences better than 10.0: 120
length of query: 148
length of database: 5,674,871
effective HSP length: 15
effective length of query: 133
effective length of database: 5,571,296
effective search space: 740982368
effective search space used: 740982368
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 13 (26.3 bits)
dna update 2005. 3.13
Homology vs DNA
Query= Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Contig-U14406-1Q.Seq.d
(148 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq;
ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq;
/db/DDBJNEW.DATA/a/new_est_rest2.seq
39,876,543 sequences; ],233,915,413 total letters

Searching........................................................done

Score E
Sequences producing significant alignments: (bits) Value N

CL113916|CL113916.1 ISB1-59E3_Sp6.1 ISB1 Xenopus tropicalis ... 38 7e-04 3
CB080314|CB080314.1 hp84d12.b1 Hedyotis terminalis flower - ... 38 0.003 2
CV074638|CV074638.1 AGENCOURT_31475077 NIH_MGC_251 Rattus no... 34 0.016 3
CF784114|CF784114.1 AGENCOURT_15940930 XtSt10-30 Xenopus tro... 34 0.021 3
CX201171|CX201171.1 MNS02392 Mouse Neurosphere Normalized cD... 32 0.029 3
BQ583657|BQ583657.1 E011977-024-005-M07-SP6 MPIZ-ADIS-024-in... 44 0.031 2
DN365077|DN365077.1 LIB3629-010-Q1-K6-F6 LIB3629 Canis famil... 32 0.032 3
CF348430|CF348430.1 AGENCOURT_15226226 NIH_ZGC_10 Danio reri... 34 0.042 3
CD323676|CD323676.1 StrPu537.002038 Sea urchin embryo 20hr b... 34 0.050 3
CB473121|CB473121.1 sn65_D01.f sn Sus scrofa cDNA 5', mRNA s... 32 0.050 3
AQ750877|AQ750877.1 HS_5573_B1_E10_SP6 RPCI-11 Human Male BA... 34 0.064 3
CK361244|CK361244.1 AGENCOURT_17114215 NIH_ZGC_4 Danio rerio... 44 0.067 2
CB182043|CB182043.1 AGENCOURT_11378775 NIH_MGC_164 Mus muscu... 34 0.075 3
BU564612|BU564612.1 AGENCOURT_10370923 NIH_MGC_141 Homo sapi... 32 0.079 3
CD107862|CD107862.1 AGENCOURT_14016797 NIH_MGC_179 Homo sapi... 34 0.084 2
CL115906|CL115906.1 ISB1-62J20_T7.1 ISB1 Xenopus tropicalis ... 44 0.091 2
CZ211308|CZ211308.1 AIAA-aac69l20.g1 Ancylostoma caninum who... 32 0.092 3
CK231939|CK231939.1 ILLUMIGEN_MCQ_3121 Katze_MMPL2 Macaca mu... 44 0.098 2
BQ522369|BQ522369.1 NISC_nl16c03.x1 NICHD_XGC_Emb7 Xenopus t... 32 0.11 3
CO076824|CO076824.1 GR__Ea38F10.f GR__Ea Gossypium raimondii... 32 0.11 3
CV571212|CV571212.1 oe10c12.y1 Human keratoconus cornea, una... 32 0.11 3
CO097445|CO097445.1 GR__Ea21E22.f GR__Ea Gossypium raimondii... 32 0.12 3
CQ529679|CQ529679.1 Sequence 61546 from Patent WO0160860. 34 0.13 2
CQ525234|CQ525234.1 Sequence 57101 from Patent WO0160860. 32 0.13 3
BY258662|BY258662.1 Mus musculus visual cortex cDNA, RIKEN f... 32 0.15 3
CB522822|CB522822.1 UI-M-GK0-ces-l-23-0-UI.r1 NIH_BMAP_GK0 M... 34 0.18 2
BQ587060|BQ587060.1 E012351-024-011-F09-SP6 MPIZ-ADIS-024-le... 34 0.19 2
CO087617|CO087617.1 GR__Ea06C19.r GR__Ea Gossypium raimondii... 36 0.19 2
CX896221|CX896221.1 JGI_CAAM6822.rev NIH_XGC_tropTe3 Xenopus... 34 0.20 2
CO113510|CO113510.1 GR__Eb013M18.f GR__Eb Gossypium raimondi... 34 0.21 2
DN369935|DN369935.1 LIB3731-029-Q6-K1-C2 LIB3731 Canis famil... 34 0.21 2
AJ341638|AJ341638.1 Homo sapiens genomic sequence surroundin... 34 0.23 2
CD107646|CD107646.1 AGENCOURT_14019324 NIH_MGC_179 Homo sapi... 34 0.23 2
CQ410311|CQ410311.1 Sequence 17382 from Patent WO0170979. 34 0.25 2
BG781123|BG781123.1 SEAUMC001080 Sea urchin primary mesenchy... 32 0.26 3
BP895767|BP895767.1 Lycopersicon esculentum cDNA, clone: FB1... 32 0.26 3
CO091146|CO091146.1 GR__Ea11H19.r GR__Ea Gossypium raimondii... 30 0.27 3
BM415043|BM415043.1 OP20112 Mixed Stage EST's from Globodera... 34 0.29 2
AZ674234|AZ674234.1 ENTLU01TR Entamoeba histolytica Sheared ... 32 0.32 3
CL466506|CL466506.1 SAIL_1257_D09.v1 SAIL Collection Arabido... 32 0.33 3
BU508700|BU508700.1 AGENCOURT_10179752 NIH_MGC_71 Homo sapie... 36 0.35 2
BM893703|BM893703.1 ij28f12.x1 Melton Normalized Human Islet... 40 0.37 2
CO124974|CO124974.1 GR__Eb08D13.r GR__Eb Gossypium raimondii... 30 0.37 3
CO088784|CO088784.1 GR__Ea07O21.r GR__Ea Gossypium raimondii... 34 0.39 3
BQ391062|BQ391062.1 NISC_mq16f06.x1 NICHD_XGC_Emb5 Xenopus t... 32 0.47 3
BQ522960|BQ522960.1 NISC_nl19e09.x1 NICHD_XGC_Emb7 Xenopus t... 34 0.47 3
AW531868|AW531868.1 UI-R-BS0-amj-c-01-0-UI.s1 UI-R-BS0 Rattu... 32 0.48 3
DN067155|DN067155.1 JGI_CABD3727.rev NIH_XGC_tropLun1 Xenopu... 32 0.51 3
CO098245|CO098245.1 GR__Ea22H21.f GR__Ea Gossypium raimondii... 32 0.51 3
BE994065|BE994065.1 UI-M-BZ1-bjk-d-05-0-UI.s1 NIH_BMAP_MHI2_... 32 0.57 3
BF499647|BF499647.2 AT14259.5prime AT Drosophila melanogaste... 34 0.58 2
BP510163|BP510163.1 Hydra magnipapillata cDNA, clone:hmp_04006. 44 0.59 1
CL485745|CL485745.1 SAIL_421_H05.v1 SAIL Collection Arabidop... 44 0.59 1
CG755615|CG755615.1 P051-1-F10.zb Ppa EcoRI BAC Library Pris... 44 0.59 1
BF826461|BF826461.1 CM4-HN0020-221100-451-e06 HN0020 Homo sa... 44 0.59 1
BH157536|BH157536.1 ENTRL88TR Entamoeba histolytica Sheared ... 44 0.59 1
CO120364|CO120364.1 GR__Eb023M23.f GR__Eb Gossypium raimondi... 32 0.61 2
CO076793|CO076793.1 GR__Ea38E17.f GR__Ea Gossypium raimondii... 32 0.65 3
BV446003|BV446003.1 MARC 41257-41258:1085661701:8 RTS-3 Bos ... 32 0.66 3
CB857386|CB857386.1 NISC_na06g09.x1 COGENE 8.5 EAT Homo sapi... 40 0.67 2
CB321113|CB321113.1 AGENCOURT_12236837 NIH_MGC_136 Mus muscu... 28 0.70 3
CN049700|CN049700.1 V4_p2_K16_TriplEx5ld_ V4 Ambystoma tigri... 32 0.70 2
CB228381|CB228381.1 AGENCOURT_11499084 NICHD_Rh_Ov1 Macaca m... 30 0.74 3
BQ588586|BQ588586.1 E012562-024-015-L13-SP6 MPIZ-ADIS-024-st... 28 0.77 3
AQ782199|AQ782199.1 HS_3176_B1_D08_T7C CIT Approved Human Ge... 28 0.80 3
AG564639|AG564639.1 Mus musculus molossinus DNA, clone:MSMg0... 40 0.80 2
AV646686|AV646686.1 Homo sapiens cDNA clone:GLCAQB10, 3'end,... 32 0.84 3
BX558879|BX558879.1 Glossina morsitans morsitans (Tseatse fl... 32 0.84 3
CF584865|CF584865.1 AGENCOURT_8917774_updated NIH_MGC_137 Mu... 30 0.84 3
CF298332|CF298332.1 7LEAF--01-K19.b1 Rice leaf plasmid cDNA ... 32 0.89 3
CB049607|CB049607.1 NISC_gj11h09.x1 NCI_CGAP_Pr28 Homo sapie... 28 0.90 3
BD221351|BD221351.1 Human gene and gene expression product V. 28 0.93 3
CK416520|CK416520.1 AUF_IpInt_52_o07 Intestine cDNA library ... 36 0.95 2
AG410413|AG410413.1 Mus musculus molossinus DNA, clone:MSMg0... 40 0.95 2
AG592746|AG592746.1 Mus musculus molossinus DNA, clone:MSMg0... 34 0.97 2
BY202933|BY202933.1 Mus musculus B6-derived CD11 +ve dendrit... 32 1.0 3
CW990001|CW990001.1 AW0583 Sanger Institute Gene Trap Librar... 32 1.1 2
AV817587|AV817587.1 Arabidopsis thaliana cDNA clone:RAFL09-9... 30 1.1 3
AZ687005|AZ687005.1 ENTHP65TR Entamoeba histolytica Sheared ... 34 1.1 2
CB195760|CB195760.1 AGENCOURT_11259537 NIH_MGC_135 Mus muscu... 30 1.1 3
CD247891|CD247891.1 AGENCOURT_14098275 NIH_MGC_172 Homo sapi... 32 1.2 2
CB469267|CB469267.1 sn05_C10.f sn Sus scrofa cDNA 5', mRNA s... 30 1.2 3
AP002341|AP002341.1 Homo sapiens genomic DNA, chromosome 11q... 32 1.2 2
CO113565|CO113565.1 GR__Eb013O02.f GR__Eb Gossypium raimondi... 32 1.3 3
CO085846|CO085846.1 GR__Ea03E22.r GR__Ea Gossypium raimondii... 32 1.3 3
BQ396639|BQ396639.1 NISC_ng22b02.x1 NICHD_XGC_Emb6 Xenopus t... 32 1.3 3
CO102317|CO102317.1 GR__Eb0029L04.f GR__Eb Gossypium raimond... 24 1.4 4
CO079895|CO079895.1 GR__Ea43A03.f GR__Ea Gossypium raimondii... 34 1.4 2
CC208101|CC208101.1 CH261-183A9_Sp6.2 CH261 Gallus gallus ge... 32 1.5 2
CO077117|CO077117.1 GR__Ea38M01.f GR__Ea Gossypium raimondii... 32 1.5 3
BQ519883|BQ519883.1 NISC_nl01d11.x1 NICHD_XGC_Emb7 Xenopus t... 32 1.5 3
DN398180|DN398180.1 LIB4003-007-Q6-K1-G1 LIB4003 Canis famil... 28 1.5 3
CO083358|CO083358.1 GR__Ea48G07.f GR__Ea Gossypium raimondii... 32 1.5 3
CO079921|CO079921.1 GR__Ea43A20.f GR__Ea Gossypium raimondii... 32 1.5 3
BM465980|BM465980.1 AGENCOURT_6423578 NIH_MGC_67 Homo sapien... 32 1.5 2
CO107665|CO107665.1 GR__Eb0039A02.f GR__Eb Gossypium raimond... 32 1.5 3
CL485741|CL485741.1 SAIL_421_G11.v1 SAIL Collection Arabidop... 32 1.5 2
CN056927|CN056927.1 Salamander_25_F18.ab1 AG Ambystoma tigri... 32 1.5 2
CO080219|CO080219.1 GR__Ea43I19.f GR__Ea Gossypium raimondii... 32 1.6 3
CX826297|CX826297.1 JGI_CAAK5077.rev NIH_XGC_tropBrn3 Xenopu... 32 1.6 2

>CL113916|CL113916.1 ISB1-59E3_Sp6.1 ISB1 Xenopus tropicalis genomic
clone ISB1-59E3,genomic survey sequence.
Length = 1084

Score = 38.2 bits (19), Expect(3) = 7e-04
Identities = 27/31 (87%)
Strand = Plus / Minus


Query: 1 aaaaaaancccaaaaaaaannnttttttttt 31
||||||| ||||||||||| |||||||||
Sbjct: 909 aaaaaaaacccaaaaaaaaattttttttttt 879

Score = 28.2 bits (14), Expect(3) = 7e-04
Identities = 20/23 (86%)
Strand = Plus / Plus


Query: 12 aaaaaaaannntttttttttttt 34
|||||||| ||||||||||||
Sbjct: 833 aaaaaaaaatttttttttttttt 855

Score = 28.2 bits (14), Expect(3) = 7e-04
Identities = 16/17 (94%)
Strand = Plus / Plus


Query: 3 aaaaancccaaaaaaaa 19
||||| |||||||||||
Sbjct: 784 aaaaaccccaaaaaaaa 800

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 81,369,806
Number of Sequences: 39876543
Number of extensions: 81369806
Number of successful extensions: 59949500
Number of sequences better than 10.0: 476
length of query: 148
length of database: ],233,915,413
effective HSP length: 22
effective length of query: 126
effective length of database: \,356,631,467
effective search space: 5588935564842
effective search space used: 5588935564842
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] Reached max 400 HSPs in BlastSaveCurrentHsp, continuing with this limit

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14406-1 (Contig-U14406-1Q) /CSM_Contig/Contig-U14406-1Q.Seq.d
(148 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 24,025,034
Number of extensions: 2177768
Number of sequences better than 10.0: 0
Number of HSP's gapped: 0
Number of HSP's successfully gapped: 0
Length of query: 49
Length of database: 1,051,180,864
Length adjustment: 22
Effective length of query: 27
Effective length of database: 979,976,566
Effective search space: 26459367282
Effective search space used: 26459367282
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.63 gvh: 0.07 alm: 0.81 top: 0.53 tms: 0.00 mit: 0.43 mip: 0.00
nuc: 2.56 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

72.0 %: nuclear
16.0 %: cytoplasmic
8.0 %: mitochondrial
4.0 %: cytoskeletal

>> prediction for Contig-U14406-1 is nuc

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0