>Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Contig-U14405-1Q.Seq.d
TTTTTTTTNNAAAAAAAAAAAAAAAAAAAAAAATTTTTTTTTNNNNTTAA
AANTTTTNNANAANAAAAAANGGNAANNANNNNAANAAAAANAANNNTTT
TTCNAAAAAANTTTTTTTTTTNAAAAAAAAAANNNTTTTTAAANNNTTTT
TAAAAAAAAAAAAAGGNNNTTTTTTTTTTTTNNAANNNNAANNGGGGNTT
TNAAAAAATTTAAAAAAAANNCNAANNGGGGNAAAAAAAAAAANNTTTTN
AAAAAANNGGGGGNNANNCCCTTTNNNCCCAAAAAAAAANNAAAAAAANN
TTTTTNAANNGGGGGGGNNNAANCCCCCCCCNAAAAAAAAAAGGNNCCCC
GGNAAAAANCCCCCCCCNNNNAANNTNAAAANNTTTTGGGGNCNNTTNAN
NTTTTTTNGGCCCCCCAAAAAAAAAAAAANGCCCCCCTTTTTTNGNTTTA
AANNNNAAAANNNAAAGGGGTTNNNNNNNNNTNNACNNGAAAAANCCNTT
TTCNNNTTTTTTTTGGGNNGGGGGGGGGGGGGGGGGGGGTTNNTTTTCCN
GGGGGGGGGGGGGGGGNGNAANTTTTTNGGGGGCCCCNNNANNNANCCCA
NNNGGGGCCNCCNACNTNANNCCNCNTTTNAAAAAAAAAAACNNNAANNT
TTCCCCCNAAANNNNANCCCCCCCCCNNTTTTTTTTTTTTAAAAAAAAAA
NNNNNNNNN

est1=CHM726F,1,700

ffxkkkkkkkiffxx*XFXXXKXGXXXXKXXXFSKKXFFXKKKXXFKXFLKKKKGXFFFX
XXXXGXXKNLKKXXXGXKKKXFXKXXGXXPXXPKKXXKXXFXXGGXXPPPKKKRXPGKXP
PPXXXKXFWGXXXFFXPPKKKKXPPFFXFKXXXXKGXXXXXXEKXXFXFFLGXGGGGGGX
XFXGGGGGXXFXGGPXXXPXXGXXXXXXFXKKKXXXFPXXXXPPPXFFF*kkxxx

Frame A:
ffxxkkkkkkkfffxxkxfxxxkxxxxxxkxxxfxkxfffxkkkxflxxf*kkkkxxfff
xxxxxgfxki*kkxxxgxkkkxfxkxggxxlxxqkkxkkxfxxxggxxppxkkkgxpxkx
ppxxxxkxfgxxxxfxgppkkkkxppfxxlxxkxxrgxxxxxxkxpfsxffwxggggggg
xfsxgggggxxfxgapxxxpxgaxxxxpxxkkknxxxspxxxxppxffffkkkxxx


Frame B:
ffxkkkkkkknffxxlkxxxxkkxxxxxxkxxffxkxfffxkkxxf*xxfkkkkrxffff
xxxxgxxkkfkkxxxxgkkkxxxkkxgxxpfxpkkkxkkxfxxggxxxppxkkkxprxkx
ppxxxxxxlgxxxxfxapqkkkxaplfxx*xxkxkgvxxxxtxkxxfxxffgxggggggv
xfpgggggxxxfxgpxxxxxxgpptxxxxxkkktxxfppkxxpppxffflkkkxxx


Frame C:
ffxkkkkkkkiffxx*XFXXXKXGXXXXKXXXFSKKXFFXKKKXXFKXFLKKKKGXFFFX
XXXXGXXKNLKKXXXGXKKKXFXKXXGXXPXXPKKXXKXXFXXGGXXPPPKKKRXPGKXP
PPXXXKXFWGXXXFFXPPKKKKXPPFFXFKXXXXKGXXXXXXEKXXFXFFLGXGGGGGGX
XFXGGGGGXXFXGGPXXXPXXGXXXXXXFXKKKXXXFPXXXXPPPXFFF*kkxxx

Query= Contig-U14405-1 (Contig-U14405-1Q)
/CSM_Contig/Contig-U14405-1Q.Seq.d
         (709 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Conti...    32  0.78

>Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Contig-U14405-1Q.Seq.d
          Length = 709

 Score = 32.2 bits (16), Expect = 0.78
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 431 gccccccttttttngntttaaa 452
           ||||||||||||||||||||||
Sbjct: 431 gccccccttttttngntttaaa 452


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 71
Number of Sequences: 6905
Number of extensions: 71
Number of successful extensions: 4
Number of sequences better than 10.0: 1
length of query: 709
length of database: 5,674,871
effective HSP length: 16
effective length of query: 693
effective length of database: 5,564,391
effective search space: 3856122963
effective search space used: 3856122963
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Contig-U14405-1Q.Seq.d
         (709 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 14,291,041
Number of extensions: 1457443
Number of successful extensions: 43131
Number of sequences better than 10.0: 0
Length of query: 709
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 685
Effective length of database: 97,308,875,965
Effective search space: 66656580036025
Effective search space used: 66656580036025
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U14405-1 (Contig-U14405-1Q) /CSM_Contig/Contig-U14405-1Q.Seq.d
         (709 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

 ***** No hits found ******

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 431,321,678
Number of extensions: 23014393
Number of successful extensions: 5574
Number of sequences better than 10.0: 0
Number of HSP's gapped: 5326
Number of HSP's successfully gapped: 0
Length of query: 236
Length of database: 1,051,180,864
Length adjustment: 125
Effective length of query: 111
Effective length of database: 646,610,989
Effective search space: 71773819779
Effective search space used: 71773819779
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.67  gvh: 0.43  alm: 0.51  top: 0.53  tms: 0.00  mit: 0.10  mip: 0.00
 nuc: 0.46  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 76.0 %: nuclear
	 12.0 %: cytoskeletal
	  4.0 %: plasma membrane
	  4.0 %: vesicles of secretory system
	  4.0 %: cytoplasmic

>> prediction for Contig-U14405-1 is nuc