Contig-U14400-1 |
Contig ID |
Contig-U14400-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1939 |
Chromosome number (1..6, M) |
4 |
Chromosome length |
5430582 |
Start point |
4053811 |
End point |
4055750 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
5 |
Number of EST |
7 |
Link to clone list |
U14400 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.21 |
Homology vs DNA |
Query= Contig-U14400-1 (Contig-U14400-1Q) /CSM_Contig/Contig-U14400-1Q.Seq.d (1939 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ400346) Dictyostelium discoideum cDNA clone:dds9i20, 3' e... 789 0.0 3 (BJ428108) Dictyostelium discoideum cDNA clone:ddv10d22, 3' ... 670 0.0 3 (BJ383133) Dictyostelium discoideum cDNA clone:ddc46p23, 3' ... 581 0.0 4 (AU052296) Dictyostelium discoideum slug cDNA, clone SLD108. 460 0.0 3 (BJ430296) Dictyostelium discoideum cDNA clone:ddv6a24, 3' e... 640 0.0 2 (BJ412041) Dictyostelium discoideum cDNA clone:ddv6a24, 5' e... 287 0.0 3 (BJ409979) Dictyostelium discoideum cDNA clone:ddv10d22, 5' ... 454 0.0 2 (AU061087) Dictyostelium discoideum slug cDNA, clone SLD108. 159 5e-34 1 (BJ388496) Dictyostelium discoideum cDNA clone:dds9i20, 5' e... 159 5e-34 1 (AL844506) Plasmodium falciparum chromosome 7. 40 0.022 19 (AC117070) Dictyostelium discoideum chromosome 2 map 2097701... 42 0.040 11 (BW315116) Ciona intestinalis cDNA, clone:ciht040m12, 5' end... 42 0.13 2 (AC116378) Homo sapiens chromosome 8 clone CTD-2517C5 map 8,... 38 0.18 2 (AC021013) Homo sapiens chromosome 8 clone RP11-104F14, WORK... 38 0.19 2 (AC104021) Homo sapiens chromosome 8, clone RP11-378A12, com... 38 0.19 2 (AC116977) Dictyostelium discoideum chromosome 2 map 5515173... 34 0.21 14 (Z81076) Caenorhabditis elegans Cosmid F35C5. 50 0.32 1 (ER313382) 1092343915862 Global-Ocean-Sampling_GS-34-01-01-1... 50 0.32 1 (DH411164) Oryzias latipes Fosmid clone:GOLWFno817_c24, reve... 50 0.32 1 (AC116979) Dictyostelium discoideum chromosome 2 map 6445720... 38 0.56 15 (CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp... 36 0.63 2 (AE002109) Ureaplasma parvum serovar 3 str. ATCC 700970 sect... 36 0.79 2 (DX124271) OG_ABa0152E06.f OG_ABa Oryza granulata genomic cl... 34 0.89 2 (CP000361) Arcobacter butzleri RM4018, complete genome. 38 0.90 23 (BJ366693) Dictyostelium discoideum cDNA clone:ddc39m21, 5' ... 34 0.99 3 (BJ415112) Dictyostelium discoideum cDNA clone:ddv21p08, 5' ... 34 1.1 3 (CR847854) Zebrafish DNA sequence from clone DKEY-229J6 in l... 48 1.3 1 (AC188782) Solanum lycopersicum cv. Heinz 1706, chromosome 5... 48 1.3 1 (AC127379) Homo sapiens BAC clone RP11-808E20 from 2, comple... 48 1.3 1 (AC118957) Rattus norvegicus clone CH230-436C18, WORKING DRA... 48 1.3 1 (AC118787) Rattus norvegicus clone CH230-433F6, *** SEQUENCI... 48 1.3 1 (AC087053) Homo sapiens chromosome 2 clone RP11-959M3 map 2,... 48 1.3 1 (CZ010218) OA_BBa0088L15.r OA_BBa Oryza alta genomic clone O... 48 1.3 1 (BZ159816) CH230-376C8.TJB CHORI-230 Segment 2 Rattus norveg... 48 1.3 1 (AC116922) Dictyostelium discoideum chromosome 2 map 6061442... 30 1.3 9 (DB926280) Manihot esculenta mRNA, clone: CAS01_018_E03, 5'end. 42 1.4 2 (AB236337) Clostridium perfringens F5603 plasmid pCPF5603 DN... 34 1.5 9 (ER515384) 1093015499059 Global-Ocean-Sampling_GS-35-01-01-1... 40 2.2 2 (AZ684545) ENTKG34TF Entamoeba histolytica Sheared DNA Entam... 42 2.2 3 (CP001047) Mycoplasma arthritidis 158L3-1, complete genome. 34 2.3 2 (AL277444) Tetraodon nigroviridis genome survey sequence PUC... 42 2.3 2 (AE009951) Fusobacterium nucleatum subsp. nucleatum ATCC 255... 34 2.5 20 (AC151916) Medicago truncatula clone mth2-57h18, complete se... 36 2.6 2 (AC117176) Dictyostelium discoideum chromosome 2 map 5018074... 36 2.7 12 (AV086458) Mus musculus adult male tongue cDNA, partial sequ... 36 3.3 3 (AC172971) Bos taurus clone CH240-274N15, WORKING DRAFT SEQU... 42 4.9 4 (BV496843) S217P61166FF10.T0 Noemie Pan troglodytes troglody... 46 5.0 1 (BV462679) ror84d08.b1 Clint Pan troglodytes verus STS genom... 46 5.0 1 (AL691469) Mouse DNA sequence from clone RP23-248F18 on chro... 46 5.0 1 (AC159641) Mus musculus BAC clone RP23-465F1 from chromosome... 46 5.0 1 (AC122310) Mus musculus BAC clone RP23-296E17 from 12, compl... 46 5.0 1 (CT005236) Pan troglodytes chromosome X clone RP43-010E09 ma... 46 5.0 1 (AC189200) Brassica rapa subsp. pekinensis clone KBrB005J17,... 46 5.0 1 (DJ132574) Method for identification of useful proteins deri... 46 5.0 1 (AL135910) Human DNA sequence from clone RP3-405B13 on chrom... 46 5.0 1 (AC117406) Homo sapiens X BAC CTD-2037D5 (CalTech Human BAC ... 46 5.0 1 (AC002349) Homo sapiens Xp22 PAC RPCI1-167A22 (from Roswell ... 46 5.0 1 (CU618326) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.0 1 (AC079314) Homo sapiens chromosome Xp clone RP11-386I20, WOR... 46 5.0 1 (CT990645) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 5.0 1 (AL591642) Human DNA sequence *** SEQUENCING CANCELLED *** f... 46 5.0 1 (AC004469) Homo sapiens clone CTB-58E15, WORKING DRAFT SEQUE... 46 5.0 1 (EK256413) 1095462012553 Global-Ocean-Sampling_GS-31-01-01-1... 46 5.0 1 (EJ544895) 1092956077406 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.0 1 (EJ514923) 1092955079398 Global-Ocean-Sampling_GS-29-01-01-1... 46 5.0 1 (EI433407) PV_GBa0026D07.f PV_GBa Phaseolus vulgaris genomic... 46 5.0 1 (BH745904) gz73g04.b1 BoBuds01 Brassica oleracea genomic clo... 46 5.0 1 (CK316401) SB02030A2A10.f1 normalized Keck-Tagu Library SB02... 46 5.0 1 (BW991814) Chamaecyparis obtusa cDNA, clone: CO04615, 3' end... 46 5.0 1 (BJ379394) Dictyostelium discoideum cDNA clone:ddc34a21, 3' ... 46 5.0 1 (FC806500) CBGC7921.fwd CBGC Lottia gigantea 15h 18h embryos... 46 5.0 1 (FC802367) CBGC504.fwd CBGC Lottia gigantea 15h 18h embryos ... 46 5.0 1 (FC802366) CBGC504.rev CBGC Lottia gigantea 15h 18h embryos ... 46 5.0 1 (FC801242) CBGC4262.rev CBGC Lottia gigantea 15h 18h embryos... 46 5.0 1 (FC798314) CBGC25346.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC798313) CBGC25346.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC797955) CBGC25120.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC791776) CBGC2120.fwd CBGC Lottia gigantea 15h 18h embryos... 46 5.0 1 (FC786042) CBGC16152.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC784901) CBGC15454.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC784900) CBGC15454.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC784316) CBGC14897.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC784315) CBGC14897.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC781010) CBGC12811.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC780164) CBGC12279.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC780163) CBGC12279.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC778005) CBGC10825.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC777932) CBGC10772.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC777931) CBGC10772.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC777800) CBGC10679.fwd CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC777799) CBGC10679.rev CBGC Lottia gigantea 15h 18h embryo... 46 5.0 1 (FC776807) CBGB739.fwd CBGB Lottia gigantea 3,6,9,12h embryo... 46 5.0 1 (FC776806) CBGB739.rev CBGB Lottia gigantea 3,6,9,12h embryo... 46 5.0 1 (FC758761) CBBN10960.rev CBBN Lottia gigantea 3,4,5,6.5d Lar... 46 5.0 1 (FC751809) CBBI5997.fwd CBBI Lottia gigantea 26h,37h,61h Lar... 46 5.0 1 (FC751808) CBBI5997.rev CBBI Lottia gigantea 26h,37h,61h Lar... 46 5.0 1 (FC741142) CBBI1229.rev CBBI Lottia gigantea 26h,37h,61h Lar... 46 5.0 1 (FC735594) CBBG9773.fwd CBBG Lottia gigantea 12,15,18h embry... 46 5.0 1 (FC735593) CBBG9773.rev CBBG Lottia gigantea 12,15,18h embry... 46 5.0 1 (FC732667) CBBG7397.fwd CBBG Lottia gigantea 12,15,18h embry... 46 5.0 1
>(BJ400346) Dictyostelium discoideum cDNA clone:dds9i20, 3' end, single read. Length = 685
Score = 789 bits (398), Expect(3) = 0.0 Identities = 398/398 (100%) Strand = Plus / Minus
Query: 1235 catttaaagatttaaatttaaagaggaaaattcatttaggagcattaagaaaagcattta 1294 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 685 catttaaagatttaaatttaaagaggaaaattcatttaggagcattaagaaaagcattta 626
Query: 1295 taactcaattgaaaatagattcagaatggatgaatagtcatggtatttgtgattacagcc 1354 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 625 taactcaattgaaaatagattcagaatggatgaatagtcatggtatttgtgattacagcc 566
Query: 1355 tattggttggattacatattagcgataaaaagggtatacaattattgaaaaccaatagcc 1414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 565 tattggttggattacatattagcgataaaaagggtatacaattattgaaaaccaatagcc 506
Query: 1415 taaagagtaatagtggtaaaaaagaagatatatcattctttaaaaaggattgtaatggtg 1474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 505 taaagagtaatagtggtaaaaaagaagatatatcattctttaaaaaggattgtaatggtg 446
Query: 1475 ttgcttcttcgatttctgagcttggtaatacaagaatcattcatccattatcaactctca 1534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 445 ttgcttcttcgatttctgagcttggtaatacaagaatcattcatccattatcaactctca 386
Query: 1535 atggtaatagagggcgttcgttatcatgttcaagtacatcagataatgatacatcaccaa 1594 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 385 atggtaatagagggcgttcgttatcatgttcaagtacatcagataatgatacatcaccaa 326
Query: 1595 caagaacaaatcttaatagtgttgttggagataatagt 1632 |||||||||||||||||||||||||||||||||||||| Sbjct: 325 caagaacaaatcttaatagtgttgttggagataatagt 288
Score = 317 bits (160), Expect(3) = 0.0 Identities = 163/164 (99%) Strand = Plus / Minus
Query: 1654 aataatagcccacccacccacaatagcattcaaccaaacaagcagtctttatcaacttca 1713 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 266 aataatagcccacccacccacaatagcattcaaccaaacaagcagtctttatcaacttca 207
Query: 1714 aatacaaataatagtttaagtagtaccaccaatactattgatgaagatgaagaaggaatt 1773 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct: 206 aatacaaataatagtttaagtagtaccaccaatactattgatgaagacgaagaaggaatt 147
Query: 1774 atttactatttaggtttaattgatattcttacaacttataattt 1817 |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 146 atttactatttaggtttaattgatattcttacaacttataattt 103
Score = 188 bits (95), Expect(3) = 0.0 Identities = 95/95 (100%) Strand = Plus / Minus
Query: 1825 cgtggtgaaaatgctgtaaaaggtttattatttgatagaacacaaatttcagcaattaat 1884 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 95 cgtggtgaaaatgctgtaaaaggtttattatttgatagaacacaaatttcagcaattaat 36
Query: 1885 cccaaagattaccaaattaggtttataaaatatat 1919 ||||||||||||||||||||||||||||||||||| Sbjct: 35 cccaaagattaccaaattaggtttataaaatatat 1
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 1,929,719,494 Number of extensions: 124147422 Number of successful extensions: 10639183 Number of sequences better than 10.0: 159 Length of query: 1939 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 1915 Effective length of database: 97,308,875,965 Effective search space: 186346497472975 Effective search space used: 186346497472975 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
2 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
1 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
1 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |