Contig-U14383-1
Contig ID Contig-U14383-1
Contig update 2002.12.18
Contig sequence
>Contig-U14383-1 (Contig-U14383-1Q) /CSM_Contig/Contig-U14383-1Q.Seq.d
AATAAAAATAAAATAAAATAAATAATAATAATAATAATAAATTAAATTAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAAT
AAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAAATAA
ATAAATAAATAAATAAATAAATAAATAAATAAATAANCGANCAANCAANC
AANCAAAAAAAAAAANNNNNNNNN

Gap no gap
Contig length 224
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U14383
List of clone(s)

est1=CHK796F,1,215
Translated Amino Acid sequence
ikik*nk******iklnk*ink*ink*ink*ink*ink*ink*ink*ink*ink*ink*I
NXRXXXQXKKKXXX


Translated Amino Acid sequence (All Frames)
Frame A:
nknkik*iiiiiin*ik*ink*ink*ink*ink*ink*ink*ink*ink*ink*ink*in
k*xxxqxxkkkxxx


Frame B:
ikik*nk******iklnk*ink*ink*ink*ink*ink*ink*ink*ink*ink*ink*I
NXRXXXQXKKKXXX


Frame C:
*k*nkinnnnnnkln*ink*ink*ink*ink*ink*ink*ink*ink*ink*ink*ink*
ixxqxxxqkkkxxx


own update ----------
Homology vs CSM-cDNA -
dna update 2005. 3.13
Homology vs DNA
Query= Contig-U14383-1 (Contig-U14383-1Q) /CSM_Contig/Contig-U14383-1Q.Seq.d
(224 letters)

Database: ddbjhum1.seq; ddbjhum10.seq; ddbjhum11.seq; ddbjhum12.seq;
ddbjhum13.seq; ddbjhum14.seq; ddbjhum15.seq; ddbjhum16.seq;
ddbjhum17.seq; ddbjhum18.seq; ddbjhum19.seq; ddbjhum2.seq;
ddbjhum20.seq; ddbjhum21.seq; ddbjhum22.seq; ddbjhum3.seq;
ddbjhum4.seq; ddbjhum5.seq; ddbjhum6.seq; ddbjhum7.seq; ddbjhum8.seq;
ddbjhum9.seq; /db/DDBJNEW.DATA/a/new_ddbjhum.seq; ddbjpri.seq;
/db/DDBJNEW.DATA/a/new_ddbjpri.seq; ddbjrod1.seq; ddbjrod10.seq;
ddbjrod11.seq; ddbjrod12.seq; ddbjrod13.seq; ddbjrod2.seq;
ddbjrod3.seq; ddbjrod4.seq; ddbjrod5.seq; ddbjrod6.seq; ddbjrod7.seq;
ddbjrod8.seq; ddbjrod9.seq; /db/DDBJNEW.DATA/a/new_ddbjrod.seq;
ddbjmam.seq; /db/DDBJNEW.DATA/a/new_ddbjmam.seq; ddbjvrt1.seq;
ddbjvrt2.seq; ddbjvrt3.seq; ddbjvrt4.seq; ddbjvrt5.seq; ddbjvrt6.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrt.seq; ddbjinv1.seq; ddbjinv2.seq;
ddbjinv3.seq; ddbjinv4.seq; ddbjinv5.seq; ddbjinv6.seq;
/db/DDBJNEW.DATA/a/new_ddbjinv.seq; ddbjpln1.seq; ddbjpln10.seq;
ddbjpln11.seq; ddbjpln2.seq; ddbjpln3.seq; ddbjpln4.seq; ddbjpln5.seq;
ddbjpln6.seq; ddbjpln7.seq; ddbjpln8.seq; ddbjpln9.seq;
/db/DDBJNEW.DATA/a/new_ddbjpln.seq; ddbjbct1.seq; ddbjbct2.seq;
ddbjbct3.seq; ddbjbct4.seq; ddbjbct5.seq; ddbjbct6.seq; ddbjbct7.seq;
ddbjbct8.seq; ddbjbct9.seq; /db/DDBJNEW.DATA/a/new_ddbjbct.seq;
ddbjvrl1.seq; ddbjvrl2.seq; ddbjvrl3.seq; ddbjvrl4.seq;
/db/DDBJNEW.DATA/a/new_ddbjvrl.seq; ddbjphg.seq;
/db/DDBJNEW.DATA/a/new_ddbjphg.seq; ddbjuna.seq;
/db/DDBJNEW.DATA/a/new_ddbjuna.seq; ddbjgss1.seq; ddbjgss10.seq;
ddbjgss100.seq; ddbjgss101.seq; ddbjgss102.seq; ddbjgss103.seq;
ddbjgss104.seq; ddbjgss11.seq; ddbjgss12.seq; ddbjgss13.seq;
ddbjgss14.seq; ddbjgss15.seq; ddbjgss16.seq; ddbjgss17.seq;
ddbjgss18.seq; ddbjgss19.seq; ddbjgss2.seq; ddbjgss20.seq;
ddbjgss21.seq; ddbjgss22.seq; ddbjgss23.seq; ddbjgss24.seq;
ddbjgss25.seq; ddbjgss26.seq; ddbjgss27.seq; ddbjgss28.seq;
ddbjgss29.seq; ddbjgss3.seq; ddbjgss30.seq; ddbjgss31.seq;
ddbjgss32.seq; ddbjgss33.seq; ddbjgss34.seq; ddbjgss35.seq;
ddbjgss36.seq; ddbjgss37.seq; ddbjgss38.seq; ddbjgss39.seq;
ddbjgss40.seq; ddbjgss41.seq; ddbjgss42.seq; ddbjgss43.seq;
ddbjgss44.seq; ddbjgss45.seq; ddbjgss46.seq; ddbjgss47.seq;
ddbjgss48.seq; ddbjgss49.seq; ddbjgss50.seq; ddbjgss51.seq;
ddbjgss52.seq; ddbjgss53.seq; ddbjgss54.seq; ddbjgss55.seq;
ddbjgss56.seq; ddbjgss57.seq; ddbjgss58.seq; ddbjgss59.seq;
ddbjgss60.seq; ddbjgss61.seq; ddbjgss62.seq; ddbjgss63.seq;
ddbjgss64.seq; ddbjgss65.seq; ddbjgss66.seq; ddbjgss67.seq;
ddbjgss68.seq; ddbjgss69.seq; ddbjgss7.seq; ddbjgss70.seq;
ddbjgss71.seq; ddbjgss72.seq; ddbjgss73.seq; ddbjgss74.seq;
ddbjgss75.seq; ddbjgss76.seq; ddbjgss77.seq; ddbjgss78.seq;
ddbjgss79.seq; ddbjgss8.seq; ddbjgss80.seq; ddbjgss81.seq;
ddbjgss82.seq; ddbjgss83.seq; ddbjgss84.seq; ddbjgss85.seq;
ddbjgss86.seq; ddbjgss87.seq; ddbjgss88.seq; ddbjgss89.seq;
ddbjgss9.seq; ddbjgss90.seq; ddbjgss91.seq; ddbjgss92.seq;
ddbjgss93.seq; ddbjgss94.seq; ddbjgss95.seq; ddbjgss96.seq;
ddbjgss97.seq; ddbjgss98.seq; ddbjgss99.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss1.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss2.seq;
/db/DDBJNEW.DATA/a/new_ddbjgss3.seq; ddbjhtg1.seq; ddbjhtg10.seq;
ddbjhtg11.seq; ddbjhtg12.seq; ddbjhtg13.seq; ddbjhtg14.seq;
ddbjhtg15.seq; ddbjhtg16.seq; ddbjhtg17.seq; ddbjhtg18.seq;
ddbjhtg19.seq; ddbjhtg2.seq; ddbjhtg20.seq; ddbjhtg21.seq;
ddbjhtg22.seq; ddbjhtg23.seq; ddbjhtg24.seq; ddbjhtg25.seq;
ddbjhtg26.seq; ddbjhtg27.seq; ddbjhtg28.seq; ddbjhtg29.seq;
ddbjhtg3.seq; ddbjhtg30.seq; ddbjhtg31.seq; ddbjhtg32.seq;
ddbjhtg33.seq; ddbjhtg34.seq; ddbjhtg35.seq; ddbjhtg36.seq;
ddbjhtg37.seq; ddbjhtg38.seq; ddbjhtg39.seq; ddbjhtg4.seq;
ddbjhtg40.seq; ddbjhtg41.seq; ddbjhtg42.seq; ddbjhtg43.seq;
ddbjhtg44.seq; ddbjhtg45.seq; ddbjhtg46.seq; ddbjhtg47.seq;
ddbjhtg48.seq; ddbjhtg49.seq; ddbjhtg5.seq; ddbjhtg50.seq;
ddbjhtg51.seq; ddbjhtg6.seq; ddbjhtg7.seq; ddbjhtg8.seq; ddbjhtg9.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg1.seq;
/db/DDBJNEW.DATA/a/new_ddbjhtg2.seq; ddbjpat1.seq; ddbjpat10.seq;
ddbjpat11.seq; ddbjpat12.seq; ddbjpat13.seq; ddbjpat14.seq;
ddbjpat15.seq; ddbjpat16.seq; ddbjpat2.seq; ddbjpat3.seq;
ddbjpat4.seq; ddbjpat5.seq; ddbjpat6.seq; ddbjpat7.seq; ddbjpat8.seq;
ddbjpat9.seq; /db/DDBJNEW.DATA/a/new_ddbjpat.seq; ddbjsts1.seq;
ddbjsts2.seq; ddbjsts3.seq; ddbjsts4.seq;
/db/DDBJNEW.DATA/a/new_ddbjsts.seq; ddbjsyn.seq;
/db/DDBJNEW.DATA/a/new_ddbjsyn.seq; est_atha1.seq;
/db/DDBJNEW.DATA/a/new_est_atha1.seq; est_cele1.seq; est_drer1.seq;
/db/DDBJNEW.DATA/a/new_est_drer1.seq; est_dmel1.seq;
/db/DDBJNEW.DATA/a/new_est_dmel1.seq; est_gmax1.seq;
/db/DDBJNEW.DATA/a/new_est_gmax1.seq; est_hum1.seq; est_hum2.seq;
est_hum3.seq; est_hum4.seq; /db/DDBJNEW.DATA/a/new_est_hum1.seq;
est_lesc1.seq; /db/DDBJNEW.DATA/a/new_est_lesc1.seq; est_mous1.seq;
est_mous2.seq; est_mous3.seq; /db/DDBJNEW.DATA/a/new_est_mous1.seq;
est_osat1.seq; /db/DDBJNEW.DATA/a/new_est_osat1.seq; est_rnor1.seq;
/db/DDBJNEW.DATA/a/new_est_rnor1.seq; est_xlae1.seq;
/db/DDBJNEW.DATA/a/new_est_xlae1.seq; est_zmay1.seq;
/db/DDBJNEW.DATA/a/new_est_zmay1.seq; est_rest1.seq; est_rest2.seq;
est_rest3.seq; est_rest4.seq; est_rest5.seq;
/db/DDBJNEW.DATA/a/new_est_rest1.seq;
/db/DDBJNEW.DATA/a/new_est_rest2.seq
39,876,543 sequences; ],233,915,413 total letters

Searching...................................................done

***** No hits found ******

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Hits to DB: 0
Number of Sequences: 39876543
Number of extensions: 0
Number of successful extensions: 0
Number of sequences better than 10.0: 0
length of query: 224
length of database: ],233,915,413
effective HSP length: 22
effective length of query: 202
effective length of database: \,356,631,467
effective search space: 8960039556334
effective search space used: 8960039556334
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
[blastall] WARNING: [000.000] 1110618013.asblm.dna: Blast: No valid letters to be indexed on context 0

ANTI-DNA BLAST search was processed by blast@nig.ac.jp, National Institute of Genetics, Japan.

protein update 2009. 7.11
Homology vs Protein
Query= Contig-U14383-1 (Contig-U14383-1Q) /CSM_Contig/Contig-U14383-1Q.Seq.d
(224 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 47 2e-04
AF416700_2(AF416700|pid:none) Empedobacter brevis metallo-beta-l... 41 0.015

>AL844504_88(AL844504|pid:none) Plasmodium falciparum 3D7 chromosome
5. &AL929352_5(AL929352|pid:none)
Length = 3134

Score = 47.4 bits (111), Expect = 2e-04
Identities = 29/39 (74%), Positives = 30/39 (76%)
Frame = +1

Query: 67 INK*INK*INK*INK*INK*INK*INK*INK*INK*INK 183
+NK INK INK INK INK INK INK INK INK INK
Sbjct: 814 MNKPINKPINKPINKPINKPINKPINKPINKPINKQINK 852

Score = 46.6 bits (109), Expect = 3e-04
Identities = 30/49 (61%), Positives = 33/49 (67%)
Frame = +1

Query: 67 INK*INK*INK*INK*INK*INK*INK*INK*INK*INK*XXXQXXKKK 213
+NK +NK INK INK INK INK INK INK INK INK Q + K
Sbjct: 810 MNKQMNKPINKPINKPINKPINKPINKPINKPINKPINKQINKQWDEPK 858

Score = 45.8 bits (107), Expect = 5e-04
Identities = 29/48 (60%), Positives = 33/48 (68%)
Frame = +1

Query: 67 INK*INK*INK*INK*INK*INK*INK*INK*INK*INK*XXXQXXKK 210
+NK +NK +NK INK INK INK INK INK INK INK Q K+
Sbjct: 806 MNKQMNKQMNKPINKPINKPINKPINKPINKPINKPINKPINKQINKQ 853

Score = 43.9 bits (102), Expect = 0.002
Identities = 26/39 (66%), Positives = 30/39 (76%)
Frame = +1

Query: 67 INK*INK*INK*INK*INK*INK*INK*INK*INK*INK 183
+NK +NK +NK +NK INK INK INK INK INK INK
Sbjct: 802 MNKQMNKQMNKQMNKPINKPINKPINKPINKPINKPINK 840

Score = 42.7 bits (99), Expect = 0.004
Identities = 25/39 (64%), Positives = 30/39 (76%)
Frame = +1

Query: 67 INK*INK*INK*INK*INK*INK*INK*INK*INK*INK 183
+NK +NK +NK +NK +NK INK INK INK INK INK
Sbjct: 798 MNKQMNKQMNKQMNKQMNKPINKPINKPINKPINKPINK 836

Score = 41.2 bits (95), Expect = 0.012
Identities = 24/38 (63%), Positives = 29/38 (76%)
Frame = +1

Query: 70 NK*INK*INK*INK*INK*INK*INK*INK*INK*INK 183
NK +NK +NK +NK +NK +NK INK INK INK INK
Sbjct: 795 NKQMNKQMNKQMNKQMNKQMNKPINKPINKPINKPINK 832

Score = 41.2 bits (95), Expect = 0.012
Identities = 27/47 (57%), Positives = 30/47 (63%)
Frame = +3

Query: 75 INK*INK*INK*INK*INK*INK*INK*INK*INK*IXXQXXXQKKK 215
+NK +NK +NK INK INK INK INK INK INK I Q K
Sbjct: 806 MNKQMNKQMNKPINKPINKPINKPINKPINKPINKPINKPINKQINK 852

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 38,172,384
Number of extensions: 1948202
Number of successful extensions: 354
Number of sequences better than 10.0: 2
Number of HSP's gapped: 101
Number of HSP's successfully gapped: 14
Length of query: 74
Length of database: 1,051,180,864
Length adjustment: 45
Effective length of query: 29
Effective length of database: 905,535,709
Effective search space: 26260535561
Effective search space used: 26260535561
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 27 (15.0 bits)

PSORT -
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0