| Contig-U14381-1 |
| Contig ID |
Contig-U14381-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
897 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
2759722 |
| End point |
2760619 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
14 |
| Number of EST |
15 |
| Link to clone list |
U14381 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.21 |
| Homology vs DNA |
Query= Contig-U14381-1 (Contig-U14381-1Q) /CSM_Contig/Contig-U14381-1Q.Seq.d
(897 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU038582) Dictyostelium discoideum slug cDNA, clone SSH896. 674 0.0 3
(C91908) Dictyostelium discoideum slug cDNA, clone SSC106. 674 0.0 3
(C91432) Dictyostelium discoideum slug cDNA, clone SSK242. 674 0.0 3
(C90699) Dictyostelium discoideum slug cDNA, clone SSJ637. 642 0.0 3
(BJ381896) Dictyostelium discoideum cDNA clone:ddc43c12, 3' ... 668 0.0 4
(AU038571) Dictyostelium discoideum slug cDNA, clone SSH883. 674 0.0 3
(AU037901) Dictyostelium discoideum slug cDNA, clone SSE435. 823 0.0 2
(BJ398025) Dictyostelium discoideum cDNA clone:dds10l18, 3' ... 668 0.0 3
(C90561) Dictyostelium discoideum slug cDNA, clone SSI725. 666 0.0 2
(C25613) Dictyostelium discoideum slug cDNA, clone SSA274. 428 0.0 4
(C89715) Dictyostelium discoideum slug cDNA, clone SSG233. 351 e-132 2
(AU074662) Dictyostelium discoideum slug cDNA, clone SSL476. 476 e-130 1
(AU074657) Dictyostelium discoideum slug cDNA, clone SSL469. 476 e-130 1
(AU073136) Dictyostelium discoideum slug cDNA, clone SSG233. 159 3e-82 4
(AU061763) Dictyostelium discoideum slug cDNA, clone SLF778. 159 4e-65 4
(AU053132) Dictyostelium discoideum slug cDNA, clone SLF778. 113 5e-38 2
(AQ999884) RPCI-23-279M6.TJ RPCI-23 Mus musculus genomic clo... 36 0.18 2
(AM437777) Vitis vinifera contig VV78X142193.9, whole genome... 48 0.58 1
(BV460468) qyx01a09.b1 Clint Pan troglodytes verus STS genom... 46 2.3 1
(AM440738) Vitis vinifera contig VV78X122438.2, whole genome... 46 2.3 1
(U28941) Caenorhabditis elegans cosmid F31D5, complete seque... 46 2.3 1
(CU606862) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1
(CU582980) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.3 1
(AC203004) Zea mays chromosome 1 clone CH201-155D2; ZMMBBc01... 46 2.3 1
(AC006802) Caenorhabditis elegans clone Y52E8, *** SEQUENCIN... 46 2.3 1
(CR261845) Forward strand read from insert in 5'HPRT inserti... 46 2.3 1
(EW773122) ST020029B20F07 Normalized and subtracted western ... 46 2.3 1
(FH157836) CHO_OF3132xo14f1.ab1 CHO_OF3 Nicotiana tabacum ge... 40 5.8 2
(ET694984) CHO_OF355xh23r1.ab1 CHO_OF Nicotiana tabacum geno... 40 6.0 2
(ET694920) CHO_OF355xh23f1.ab1 CHO_OF Nicotiana tabacum geno... 40 6.2 2
(FE245592) CAPG8960.fwd CAPG Naegleria gruberi amoeba stage ... 42 6.3 2
(FH473622) CHO_OF4986xk23r1.ab1 CHO_OF4 Nicotiana tabacum ge... 40 6.6 2
(AC151323) Xenopus tropicalis clone ISB-253E6, complete sequ... 44 9.0 1
(AP008217) Oryza sativa (japonica cultivar-group) genomic DN... 44 9.0 1
(AC215453) Solanum lycopersicum chromosome 2 clone C02SLe003... 44 9.0 1
(AC137759) Oryza sativa Japonica Group chromosome 11 clone O... 44 9.0 1
(EA685419) Sequence 64298 from patent US 7365185. 44 9.0 1
(AR375148) Sequence 154 from patent US 6605709. 44 9.0 1
(AC147784) Canis Familiaris, clone XX-25F3, complete sequence. 44 9.0 1
(AC152055) Xenopus tropicalis clone ISB1-161C11, WORKING DRA... 44 9.0 1
(AC135297) Rattus norvegicus clone CH230-473D1, *** SEQUENCI... 44 9.0 1
(AC117970) Rattus norvegicus clone CH230-394B15, *** SEQUENC... 44 9.0 1
(AC110644) Rattus norvegicus clone CH230-289E24, *** SEQUENC... 44 9.0 1
(AC106358) Rattus norvegicus clone CH230-109O6, *** SEQUENCI... 44 9.0 1
(AC179907) Strongylocentrotus purpuratus clone R3-1003I20, W... 44 9.0 1
(ED668801) GM_WBa0099C10.f GM_WBa Glycine max genomic clone ... 44 9.0 1
(ED412530) AUAC-aay77h04.b1 Ascaris suum whole genome shotgu... 44 9.0 1
(ED374107) AUAC-aax55f08.b1 Ascaris suum whole genome shotgu... 44 9.0 1
(ED222759) AUAC-aaj84e02.g1 Ascaris suum whole genome shotgu... 44 9.0 1
(DU899726) 410149 Tomato HindIII BAC Library Solanum lycoper... 44 9.0 1
(DH786650) Rattus norvegicus DNA, BAC clone: RNB1-376P20, 3'... 44 9.0 1
(CC261055) CH261-166E3_RM1.1 CH261 Gallus gallus genomic clo... 44 9.0 1
(AU038783) Dictyostelium discoideum slug cDNA, clone SSL476. 44 9.0 1
(BW486883) Ciona intestinalis cDNA, clone:cima025h05, 5'end,... 44 9.0 1
(BW305055) Ciona intestinalis cDNA, clone:cinc034l14, 5' end... 44 9.0 1
(BW278160) Ciona intestinalis cDNA, clone:cign080g14, 5' end... 44 9.0 1
(FK135695) XABT171278.b1 Gateway compatible cien cDNA librar... 44 9.0 1
(EX351281) GQ03109.SP6_N19 GQ031 - Xylem Scrapings (Normaliz... 44 9.0 1
(EX351180) GQ03109.SP6_J09 GQ031 - Xylem Scrapings (Normaliz... 44 9.0 1
(EX331458) GQ02902.SP6_M12 GQ029 - Xylem scrapings - AT NITE... 44 9.0 1
(EX316044) GQ02809.SP6_F04 GQ028 - Cambium / phloem scrappin... 44 9.0 1
>(AU038582) Dictyostelium discoideum slug cDNA, clone SSH896.
Length = 600
Score = 674 bits (340), Expect(3) = 0.0
Identities = 340/340 (100%)
Strand = Plus / Plus
Query: 362 gaaggtattcattatgttggtggacatggcgcatgttttgatttcccttcaaatatccca 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 gaaggtattcattatgttggtggacatggcgcatgttttgatttcccttcaaatatccca 221
Query: 422 ttactacaattgggtgccagaatttatgaacatggtggtgttgtatctgcaatatgtcat 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttactacaattgggtgccagaatttatgaacatggtggtgttgtatctgcaatatgtcat 281
Query: 482 ggtccttccggtttattgaatattaaattaatgggtggtacttatttaattcaaggtaaa 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ggtccttccggtttattgaatattaaattaatgggtggtacttatttaattcaaggtaaa 341
Query: 542 aatgttgcttgtttcacaaactctgaagaagaagccgttggtttagtaaaagcaattcca 601
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 aatgttgcttgtttcacaaactctgaagaagaagccgttggtttagtaaaagcaattcca 401
Query: 602 ttctcacttcaagattgtatgaaagaacgtggtgcctatgttcatgttaaaccaaattgg 661
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ttctcacttcaagattgtatgaaagaacgtggtgcctatgttcatgttaaaccaaattgg 461
Query: 662 caatcaaatgttcaaattgacggtagattagtaactggtc 701
||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 caatcaaatgttcaaattgacggtagattagtaactggtc 501
Score = 321 bits (162), Expect(3) = 0.0
Identities = 162/162 (100%)
Strand = Plus / Plus
Query: 200 ttgaaattgatttcgtttcaccaaagggtggaccatgtccattggatccagcatcttatg 259
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ttgaaattgatttcgtttcaccaaagggtggaccatgtccattggatccagcatcttatg 60
Query: 260 atttatcagatccaattaatagagaattttgggaagatgcagaagttcaaaagaaattga 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atttatcagatccaattaatagagaattttgggaagatgcagaagttcaaaagaaattga 120
Query: 320 aaaatactttagcaccaggtggtgttgattcaaatattttcg 361
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 aaaatactttagcaccaggtggtgttgattcaaatattttcg 162
Score = 155 bits (78), Expect(3) = 0.0
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 709 tccacaatcttcaactgaattaggtgataaacttggtgatttagtacttgaaattcaagc 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 tccacaatcttcaactgaattaggtgataaacttggtgatttagtacttgaaattcaagc 565
Query: 769 aagaagaatagttgctca 786
||||||||||||||||||
Sbjct: 566 aagaagaatagttgctca 583
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 853,295,615
Number of extensions: 49258725
Number of successful extensions: 3730986
Number of sequences better than 10.0: 61
Length of query: 897
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 873
Effective length of database: 97,308,875,965
Effective search space: 84950648717445
Effective search space used: 84950648717445
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.11 |
| Homology vs Protein |
Query= Contig-U14381-1 (Contig-U14381-1Q) /CSM_Contig/Contig-U14381-1Q.Seq.d
(897 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CP000088_2819(CP000088|pid:none) Thermobifida fusca YX, complete... 125 8e-39
AP009152_409(AP009152|pid:none) Kocuria rhizophila DC2201 DNA, c... 133 1e-37
BA000028_3351(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 121 1e-36
CU928163_1745(CU928163|pid:none) Escherichia coli UMN026 chromos... 123 1e-35
AE016827_1423(AE016827|pid:none) Mannheimia succiniciproducens M... 122 1e-34
AE003849_1134(AE003849|pid:none) Xylella fastidiosa 9a5c, comple... 119 4e-33
AL954747_2261(AL954747|pid:none) Nitrosomonas europaea ATCC 1971... 109 5e-33
AM236080_2354(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 115 5e-33
AE016879_4359(AE016879|pid:none) Bacillus anthracis str. Ames, c... 104 5e-33
CP001407_4412(CP001407|pid:none) Bacillus cereus 03BB102, comple... 104 5e-33
CP000454_632(CP000454|pid:none) Arthrobacter sp. FB24, complete ... 114 7e-33
CP001176_4438(CP001176|pid:none) Bacillus cereus B4264, complete... 102 2e-32
AE017194_4556(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 102 2e-32
AE016877_4299(AE016877|pid:none) Bacillus cereus ATCC 14579, com... 102 3e-32
CP001177_4427(CP001177|pid:none) Bacillus cereus AH187, complete... 101 3e-32
CP000227_4187(CP000227|pid:none) Bacillus cereus Q1, complete ge... 101 3e-32
CP000926_2487(CP000926|pid:none) Pseudomonas putida GB-1, comple... 106 1e-31
AM295250_2385(AM295250|pid:none) Staphylococcus carnosus subsp. ... 112 5e-31
CP000949_2436(CP000949|pid:none) Pseudomonas putida W619, comple... 106 6e-31
CP000473_1453(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 94 6e-31
AM746676_956(AM746676|pid:none) Sorangium cellulosum 'So ce 56' ... 100 8e-31
CP000076_2811(CP000076|pid:none) Pseudomonas fluorescens Pf-5, c... 100 8e-31
CP000439_818(CP000439|pid:none) Francisella tularensis subsp. no... 105 8e-31
CU638744_649(CU638744|pid:none) Podospora anserina genomic DNA c... 111 1e-30
CP000103_1364(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 103 1e-30
CP001287_3017(CP001287|pid:none) Cyanothece sp. PCC 8801, comple... 92 2e-30
AM398681_748(AM398681|pid:none) Flavobacterium psychrophilum JIP... 95 2e-30
CP000821_285(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 100 2e-30
AE007294_4(AE007294|pid:none) Sinorhizobium meliloti 1021 plasmi... 135 2e-30
CP000440_1987(CP000440|pid:none) Burkholderia ambifaria AMMD chr... 135 2e-30
CP001124_1008(CP001124|pid:none) Geobacter bemidjiensis Bem, com... 105 3e-30
BX842650_45(BX842650|pid:none) Bdellovibrio bacteriovorus comple... 134 4e-30
AM236080_1217(AM236080|pid:none) Rhizobium leguminosarum bv. vic... 96 5e-30
AL935252_68(AL935252|pid:none) Lactobacillus plantarum strain WC... 99 5e-30
CP000090_26(CP000090|pid:none) Ralstonia eutropha JMP134 chromos... 97 9e-30
AP006716_218(AP006716|pid:none) Staphylococcus haemolyticus JCSC... 114 1e-29
AE017340_2569(AE017340|pid:none) Idiomarina loihiensis L2TR, com... 97 2e-29
CP000516_200(CP000516|pid:none) Marinobacter aquaeolei VT8 plasm... 89 2e-29
CP000360_93(CP000360|pid:none) Acidobacteria bacterium Ellin345,... 88 6e-29
CP000472_246(CP000472|pid:none) Shewanella piezotolerans WP3, co... 95 6e-29
CP001026_86(CP001026|pid:none) Burkholderia ambifaria MC40-6 chr... 130 6e-29
CP000380_195(CP000380|pid:none) Burkholderia cenocepacia AU 1054... 109 9e-29
AP009484_46(AP009484|pid:none) Macrococcus caseolyticus JCSC5402... 100 9e-29
CP000302_1375(CP000302|pid:none) Shewanella denitrificans OS217,... 93 9e-29
AC3083(AC3083) NonF-related protein [imported] - Agrobacterium t... 129 1e-28
CP000075_3318(CP000075|pid:none) Pseudomonas syringae pv. syring... 84 2e-28
CP000863_1932(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 100 3e-28
CU459140_18(CU459140|pid:none) Acinetobacter baumannii str. AYE ... 96 3e-28
CU207366_717(CU207366|pid:none) Gramella forsetii KT0803 complet... 90 3e-28
CP000082_1353(CP000082|pid:none) Psychrobacter arcticus 273-4, c... 92 5e-28
CU633750_2156(CU633750|pid:none) Cupriavidus taiwanensis str. LM... 89 5e-28
AE013598_1079(AE013598|pid:none) Xanthomonas oryzae pv. oryzae K... 87 6e-28
CP000740_462(CP000740|pid:none) Sinorhizobium medicae WSM419 pla... 94 6e-28
AP008229_995(AP008229|pid:none) Xanthomonas oryzae pv. oryzae MA... 87 6e-28
CP001053_216(CP001053|pid:none) Burkholderia phytofirmans PsJN c... 93 8e-28
CP000416_1797(CP000416|pid:none) Lactobacillus brevis ATCC 367, ... 95 1e-27
AP009387_605(AP009387|pid:none) Burkholderia multivorans ATCC 17... 107 1e-27
CR936503_1716(CR936503|pid:none) Lactobacillus sakei strain 23K ... 94 1e-27
CP000931_345(CP000931|pid:none) Shewanella halifaxensis HAW-EB4,... 95 2e-27
CP000085_1692(CP000085|pid:none) Burkholderia thailandensis E264... 90 3e-27
CP000379_1102(CP000379|pid:none) Burkholderia cenocepacia AU 105... 86 4e-27
AM260480_2474(AM260480|pid:none) Ralstonia eutropha H16 chromoso... 87 5e-27
CU459141_1631(CU459141|pid:none) Acinetobacter baumannii str. AY... 99 6e-27
CP001172_1583(CP001172|pid:none) Acinetobacter baumannii AB307-0... 99 6e-27
CR522870_2300(CR522870|pid:none) Desulfotalea psychrophila LSv54... 89 6e-27
CP001002_27(CP001002|pid:none) Methylobacterium radiotolerans JC... 87 6e-27
BX950851_3537(BX950851|pid:none) Erwinia carotovora subsp. atros... 84 6e-27
AM747721_1411(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 85 8e-27
CP000967_4038(CP000967|pid:none) Xanthomonas oryzae pv. oryzae P... 83 1e-26
CP000514_321(CP000514|pid:none) Marinobacter aquaeolei VT8, comp... 86 1e-26
AP007170_85(AP007170|pid:none) Aspergillus oryzae RIB40 genomic ... 99 1e-26
CP000615_1493(CP000615|pid:none) Burkholderia vietnamiensis G4 c... 87 1e-26
CP000435_1043(CP000435|pid:none) Synechococcus sp. CC9311, compl... 91 2e-26
CP000503_225(CP000503|pid:none) Shewanella sp. W3-18-1, complete... 88 2e-26
CP000949_2062(CP000949|pid:none) Pseudomonas putida W619, comple... 90 2e-26
CP000152_1734(CP000152|pid:none) Burkholderia sp. 383 chromosome... 86 2e-26
AE017194_4558(AE017194|pid:none) Bacillus cereus ATCC 10987, com... 115 2e-26
CP000138_538(CP000138|pid:none) Rhizobium etli CFN 42 plasmid p4... 86 4e-26
AM286690_2639(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 105 4e-26
CP000739_332(CP000739|pid:none) Sinorhizobium medicae WSM419 pla... 87 4e-26
AE016825_3236(AE016825|pid:none) Chromobacterium violaceum ATCC ... 99 7e-26
CP000563_266(CP000563|pid:none) Shewanella baltica OS155, comple... 86 7e-26
CP000891_270(CP000891|pid:none) Shewanella baltica OS195, comple... 86 7e-26
AM181176_2342(AM181176|pid:none) Pseudomonas fluorescens SBW25 c... 87 7e-26
CP000485_3874(CP000485|pid:none) Bacillus thuringiensis str. Al ... 114 9e-26
CP001176_4440(CP001176|pid:none) Bacillus cereus B4264, complete... 114 1e-25
CP001197_2166(CP001197|pid:none) Desulfovibrio vulgaris str. 'Mi... 91 2e-25
CP001283_4484(CP001283|pid:none) Bacillus cereus AH820, complete... 112 2e-25
CP001298_4633(CP001298|pid:none) Methylobacterium chloromethanic... 84 4e-25
AE015451_2966(AE015451|pid:none) Pseudomonas putida KT2440 compl... 99 6e-25
AM286690_2420(AM286690|pid:none) Alcanivorax borkumensis SK2, co... 80 6e-25
CP001026_1065(CP001026|pid:none) Burkholderia ambifaria MC40-6 c... 82 1e-24
CP001186_4514(CP001186|pid:none) Bacillus cereus G9842, complete... 109 1e-24
CP000927_784(CP000927|pid:none) Caulobacter sp. K31, complete ge... 88 1e-24
AB024531_3(AB024531|pid:none) Lactococcus garvieae SA2F01-1, SA2... 85 1e-24
CP000267_19(CP000267|pid:none) Rhodoferax ferrireducens T118, co... 87 2e-24
CP000438_2321(CP000438|pid:none) Pseudomonas aeruginosa UCBPP-PA... 100 2e-24
AM295250_80(AM295250|pid:none) Staphylococcus carnosus subsp. ca... 100 2e-24
AP009484_1040(AP009484|pid:none) Macrococcus caseolyticus JCSC54... 94 2e-24
AY658048_1(AY658048|pid:none) Synthetic construct Peudomonas aer... 100 3e-24
CP001172_1585(CP001172|pid:none) Acinetobacter baumannii AB307-0... 98 5e-24
AE015929_1055(AE015929|pid:none) Staphylococcus epidermidis ATCC... 101 5e-24
CP001615_1850(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 109 5e-24
AP011115_2705(AP011115|pid:none) Rhodococcus opacus B4 DNA, comp... 114 6e-24
CP001022_1314(CP001022|pid:none) Exiguobacterium sibiricum 255-1... 104 8e-24
AJ312276_9(AJ312276|pid:none) Enterococcus faecalis arginine dei... 87 1e-23
CP000863_1925(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 97 2e-23
CP000521_2015(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 96 2e-23
CP000394_90(CP000394|pid:none) Granulibacter bethesdensis CGDNIH... 99 2e-23
CP000943_613(CP000943|pid:none) Methylobacterium sp. 4-46, compl... 97 2e-23
CP001154_80(CP001154|pid:none) Laribacter hongkongensis HLHK9, c... 87 3e-23
AM270268_16(AM270268|pid:none) Aspergillus niger contig An12c012... 93 1e-22
AP008955_5819(AP008955|pid:none) Brevibacillus brevis NBRC 10059... 108 2e-22
CP000591_199(CP000591|pid:none) Ostreococcus lucimarinus CCE9901... 94 2e-22
AE017283_571(AE017283|pid:none) Propionibacterium acnes KPA17120... 79 2e-22
AM889285_2843(AM889285|pid:none) Gluconacetobacter diazotrophicu... 97 3e-22
AE008918_1017(AE008918|pid:none) Brucella melitensis 16M chromos... 91 3e-22
AM236080_314(AM236080|pid:none) Rhizobium leguminosarum bv. vici... 83 4e-22
AM295250_2423(AM295250|pid:none) Staphylococcus carnosus subsp. ... 107 5e-22
CP000150_944(CP000150|pid:none) Burkholderia sp. 383 chromosome ... 107 5e-22
CP000606_3099(CP000606|pid:none) Shewanella loihica PV-4, comple... 89 7e-22
BA000045_3809(BA000045|pid:none) Gloeobacter violaceus PCC 7421 ... 96 9e-22
CP000103_1128(CP000103|pid:none) Nitrosospira multiformis ATCC 2... 106 9e-22
FM954972_1100(FM954972|pid:none) Vibrio splendidus LGP32 chromos... 86 1e-21
CP001489_207(CP001489|pid:none) Brucella melitensis ATCC 23457 c... 91 2e-21
CP000912_215(CP000912|pid:none) Brucella suis ATCC 23445 chromos... 89 2e-21
CP000699_2233(CP000699|pid:none) Sphingomonas wittichii RW1, com... 79 3e-21
CP000943_5316(CP000943|pid:none) Methylobacterium sp. 4-46, comp... 105 3e-21
CP000377_1750(CP000377|pid:none) Silicibacter sp. TM1040, comple... 93 3e-21
AM920689_46(AM920689|pid:none) Xanthomonas campestris pv. campes... 86 3e-21
AE008922_42(AE008922|pid:none) Xanthomonas campestris pv. campes... 86 3e-21
AE017263_405(AE017263|pid:none) Mesoplasma florum L1 complete ge... 77 1e-20
CP001039_77(CP001039|pid:none) Nostoc punctiforme PCC 73102 plas... 92 1e-20
CP001186_4512(CP001186|pid:none) Bacillus cereus G9842, complete... 102 2e-20
CP001638_2389(CP001638|pid:none) Geobacillus sp. WCH70, complete... 102 2e-20
AM747721_2104(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 101 4e-20
CP000140_3185(CP000140|pid:none) Parabacteroides distasonis ATCC... 99 2e-19
CR954218_14(CR954218|pid:none) Ostreococcus tauri strain OTTH059... 99 2e-19
AP006841_3347(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,... 99 2e-19
CP000774_1672(CP000774|pid:none) Parvibaculum lavamentivorans DS... 98 4e-19
CP000009_718(CP000009|pid:none) Gluconobacter oxydans 621H, comp... 98 4e-19
CP000083_900(CP000083|pid:none) Colwellia psychrerythraea 34H, c... 94 5e-18
CP000083_1246(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 94 6e-18
FN392321_706(FN392321|pid:none) Pichia pastoris GS115 chromosome... 93 1e-17
CP000699_2510(CP000699|pid:none) Sphingomonas wittichii RW1, com... 72 1e-17
AM285304_283(AM285304|pid:none) Spiroplasma citri GII3-3X chromo... 59 2e-17
CP000139_1973(CP000139|pid:none) Bacteroides vulgatus ATCC 8482,... 92 3e-17
AM490493_1(AM490493|pid:none) Herbaspirillum seropedicae HS248.0... 91 4e-17
CP000884_4289(CP000884|pid:none) Delftia acidovorans SPH-1, comp... 91 4e-17
CP000388_2630(CP000388|pid:none) Pseudoalteromonas atlantica T6c... 87 1e-15
CP000425_1187(CP000425|pid:none) Lactococcus lactis subsp. cremo... 60 5e-15
CP000454_3874(CP000454|pid:none) Arthrobacter sp. FB24, complete... 77 8e-13
CP000961_3804(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 77 1e-12
AP006618_1598(AP006618|pid:none) Nocardia farcinica IFM 10152 DN... 77 1e-12
(O43084) RecName: Full=Uncharacterized protein C947.09; ... 76 2e-12
CP000474_844(CP000474|pid:none) Arthrobacter aurescens TC1, comp... 75 3e-12
AF326276_1(AF326276|pid:none) Coccidioides immitis macrophage bi... 74 5e-12
AP008957_5715(AP008957|pid:none) Rhodococcus erythropolis PR4 DN... 74 7e-12
(Q09675) RecName: Full=Uncharacterized protein C5H10.02c; ... 72 2e-11
CP000083_2433(CP000083|pid:none) Colwellia psychrerythraea 34H, ... 64 2e-11
(Q10092) RecName: Full=Uncharacterized protein C11D3.13; ... 72 3e-11
CP000850_1661(CP000850|pid:none) Salinispora arenicola CNS-205, ... 72 3e-11
CR382139_63(CR382139|pid:none) Debaryomyces hansenii strain CBS7... 70 7e-11
EF990140_6(EF990140|pid:none) Streptomyces spiroverticillatus co... 70 1e-10
BA000030_4779(BA000030|pid:none) Streptomyces avermitilis MA-468... 70 1e-10
AB2560(AB2560) hypothetical protein alr8073 [imported] - Nostoc ... 70 1e-10
(Q04432) RecName: Full=Probable chaperone protein HSP31; ... 69 2e-10
AY558337_1(AY558337|pid:none) Saccharomyces cerevisiae clone FLH... 69 2e-10
CP000667_1692(CP000667|pid:none) Salinispora tropica CNB-440, co... 68 4e-10
CR382129_825(CR382129|pid:none) Yarrowia lipolytica strain CLIB1... 67 8e-10
AM270319_4(AM270319|pid:none) Aspergillus niger contig An14c0120... 66 2e-09
CR382124_27(CR382124|pid:none) Kluyveromyces lactis strain NRRL ... 65 2e-09
CR382124_28(CR382124|pid:none) Kluyveromyces lactis strain NRRL ... 65 2e-09
AM233362_1241(AM233362|pid:none) Francisella tularensis subsp. h... 65 4e-09
CU234118_4178(CU234118|pid:none) Bradyrhizobium sp. ORS278,compl... 59 2e-08
CP001615_1323(CP001615|pid:none) Exiguobacterium sp. AT1b, compl... 52 3e-08
CR382136_36(CR382136|pid:none) Debaryomyces hansenii strain CBS7... 61 6e-08
AP009493_1205(AP009493|pid:none) Streptomyces griseus subsp. gri... 60 8e-08
CP000264_3480(CP000264|pid:none) Jannaschia sp. CCS1, complete g... 60 1e-07
CR382137_157(CR382137|pid:none) Debaryomyces hansenii strain CBS... 59 3e-07
CP000828_1403(CP000828|pid:none) Acaryochloris marina MBIC11017,... 58 4e-07
AY013584_11(AY013584|pid:none) Sinorhizobium meliloti fructose 1... 58 5e-07
CP000431_3072(CP000431|pid:none) Rhodococcus jostii RHA1, comple... 57 6e-07
CP000828_201(CP000828|pid:none) Acaryochloris marina MBIC11017, ... 55 2e-06
CP000961_2938(CP000961|pid:none) Shewanella woodyi ATCC 51908, c... 52 3e-05
CP000680_1135(CP000680|pid:none) Pseudomonas mendocina ymp, comp... 52 4e-05
CP001016_2454(CP001016|pid:none) Beijerinckia indica subsp. indi... 42 5e-04
CU468230_1506(CU468230|pid:none) Acinetobacter baumannii str. SD... 47 7e-04
AY596297_2288(AY596297|pid:none) Haloarcula marismortui ATCC 430... 47 7e-04
CP000863_2355(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 47 7e-04
CP000094_2433(CP000094|pid:none) Pseudomonas fluorescens Pf0-1, ... 46 0.002
AM285304_284(AM285304|pid:none) Spiroplasma citri GII3-3X chromo... 45 0.003
AP007161_104(AP007161|pid:none) Aspergillus oryzae RIB40 genomic... 45 0.004
CR543861_1056(CR543861|pid:none) Acinetobacter sp. ADP1 complete... 44 0.007
CP001230_1520(CP001230|pid:none) Persephonella marina EX-H1, com... 43 0.016
AM747721_2589(AM747721|pid:none) Burkholderia cenocepacia J2315 ... 42 0.036
CP000462_3038(CP000462|pid:none) Aeromonas hydrophila subsp. hyd... 40 0.081
CP000783_1185(CP000783|pid:none) Enterobacter sakazakii ATCC BAA... 40 0.14
CP000609_1036(CP000609|pid:none) Methanococcus maripaludis C5, c... 40 0.14
CP000742_1416(CP000742|pid:none) Methanococcus vannielii SB, com... 40 0.14
AM920427_993(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 39 0.18
CP000743_720(CP000743|pid:none) Methanococcus aeolicus Nankai-3,... 39 0.31
(Q6GBT6) RecName: Full=Chaperone protein hchA; AltName: Full=Hsp... 39 0.31
CP001026_87(CP001026|pid:none) Burkholderia ambifaria MC40-6 chr... 38 0.40
(A5IQA5) RecName: Full=Chaperone protein hchA; AltName: Full=Hsp... 38 0.53
(A6QEK3) RecName: Full=Chaperone protein hchA; AltName: Full=Hsp... 37 0.90
CP000441_1808(CP000441|pid:none) Burkholderia ambifaria AMMD chr... 37 0.90
CP000300_31(CP000300|pid:none) Methanococcoides burtonii DSM 624... 36 2.0
CU468135_3044(CU468135|pid:none) Erwinia tasmaniensis strain ET1... 35 2.6
AB3083(AB3083) conserved hypothetical protein Atu4286 [imported]... 35 2.6
CP001034_1709(CP001034|pid:none) Natranaerobius thermophilus JW/... 35 3.4
CP000745_1563(CP000745|pid:none) Methanococcus maripaludis C7, c... 35 3.4
BX950229_559(BX950229|pid:none) Methanococcus maripaludis strain... 35 3.4
(A1ACB2) RecName: Full=Chaperone protein hchA; AltName: Full=Hsp... 35 4.5
CP000521_3036(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 34 5.8
(B1X6B7) RecName: Full=Chaperone protein hchA; AltName: Full=Hsp... 34 5.8
CU459141_688(CU459141|pid:none) Acinetobacter baumannii str. AYE... 34 5.8
CP000863_3015(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 34 5.8
CP000140_1509(CP000140|pid:none) Parabacteroides distasonis ATCC... 34 5.8
AE005174_2746(AE005174|pid:none) Escherichia coli O157:H7 EDL933... 34 5.8
CP001182_3167(CP001182|pid:none) Acinetobacter baumannii AB0057,... 34 5.8
CU458896_1912(CU458896|pid:none) Mycobacterium abscessus chromos... 34 7.6
AE017221_1579(AE017221|pid:none) Thermus thermophilus HB27, comp... 33 9.9
>CP000088_2819(CP000088|pid:none) Thermobifida fusca YX, complete
genome.
Length = 227
Score = 125 bits (313), Expect(2) = 8e-39
Identities = 62/131 (47%), Positives = 87/131 (66%)
Frame = +2
Query: 368 IHYVGGHGACFDFPSNIPLLQLGARIYEHGGVVSAICHGPSGLLNIKLMGGTYLIQGKNV 547
+++VGGHG +DFP L L IYE GGVV+A+CHGP+GL+N+KL G YL++GK
Sbjct: 98 VYFVGGHGTMWDFPDAADLAALARDIYEAGGVVAAVCHGPAGLVNLKLSDGRYLVEGKEF 157
Query: 548 ACFTNSEEEAVGLVKAIPFSLQDCMKERGAYVHVKPNWQSNVQIDGRLVTGQKNPQSSTE 727
A FTN EE+AV L +PF LQ ++ERG KP ++S V + RLVTGQ NP S++
Sbjct: 158 ASFTNEEEDAVNLSGVVPFLLQSKLEERGGIHVKKPKFESCVVVSERLVTGQ-NPASASG 216
Query: 728 LGDKLGDLVLE 760
+ ++ L+ +
Sbjct: 217 VAEETVKLLAD 227
Score = 59.7 bits (143), Expect(2) = 8e-39
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +1
Query: 85 KVLFVISSHSDLGNTNRKTGYYLSGGSTSHGRNYQERGIEIDFVSPKGGPCPLDPASYDL 264
+VL ++SH LG+T + TGYY+ + +++ G E+ FVS KGG P Y+
Sbjct: 7 RVLLALTSHGSLGDTGKPTGYYVP-EAAHPWEVFRKAGYEVSFVSVKGGQPP--ATGYNA 63
Query: 265 SDPINREFWEDAEVQKKLKNT 327
D + REF ED EV+K L +T
Sbjct: 64 EDEVQREFLEDPEVKKALADT 84
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,342,196,355
Number of extensions: 29442872
Number of successful extensions: 65150
Number of sequences better than 10.0: 223
Number of HSP's gapped: 64977
Number of HSP's successfully gapped: 372
Length of query: 299
Length of database: 1,051,180,864
Length adjustment: 128
Effective length of query: 171
Effective length of database: 636,901,312
Effective search space: 108910124352
Effective search space used: 108910124352
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
11 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |