Contig-U14351-1 |
Contig ID |
Contig-U14351-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
862 |
Chromosome number (1..6, M) |
3 |
Chromosome length |
6358359 |
Start point |
1178078 |
End point |
1178864 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
4 |
Number of EST |
4 |
Link to clone list |
U14351 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.21 |
Homology vs DNA |
Query= Contig-U14351-1 (Contig-U14351-1Q) /CSM_Contig/Contig-U14351-1Q.Seq.d (862 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(AU263449) Dictyostelium discoideum vegetative cDNA clone:VS... 1243 0.0 1 (BJ380773) Dictyostelium discoideum cDNA clone:ddc39c12, 3' ... 1233 0.0 1 (AU270557) Dictyostelium discoideum vegetative cDNA clone:VS... 1078 0.0 1 (AU270556) Dictyostelium discoideum vegetative cDNA clone:VS... 1007 0.0 1 (BJ366521) Dictyostelium discoideum cDNA clone:ddc39c12, 5' ... 718 0.0 2 (AU264324) Dictyostelium discoideum vegetative cDNA clone:VS... 914 0.0 1 (AC115613) Dictyostelium discoideum chromosome 2 map 209116-... 226 1e-54 1 (AC116986) Dictyostelium discoideum chromosome 2 map 2234041... 218 3e-52 1 (DQ466086) Clostridium phage phiC2, complete genome. 42 0.12 4 (EU115830) Dictyostelium discoideum Ddi2511 RNA, complete se... 50 0.14 1 (BZ261862) CH230-521G3.TJ CHORI-230 Segment 2 Rattus norvegi... 46 0.21 2 (AC149029) Alligator mississippiensis clone VMRC8-367D4, WOR... 48 0.55 1 (EJ708306) 1092956062656 Global-Ocean-Sampling_GS-30-02-01-1... 48 0.55 1 (EI513439) MUGQ_CH252P232H17Sp6_CN404_073 CHORI-252 Vervet M... 36 1.5 2 (ET021305) MUGQ_CH252P328K04T7_CP615_006 CHORI-252 Vervet Mo... 36 1.5 2 (CT739527) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.2 3 (AC125373) Mus musculus BAC clone RP23-379A13 from chromosom... 46 2.2 1 (AC183598) Pan troglodytes BAC clone CH251-455P14 from chrom... 46 2.2 1 (AM452261) Vitis vinifera contig VV78X064446.6, whole genome... 46 2.2 1 (AC005011) Homo sapiens BAC clone GS1-111G14 from 7, complet... 46 2.2 1 (AC130143) Rattus norvegicus clone CH230-171A22, WORKING DRA... 46 2.2 1 (DU036728) 19366 Tomato HindIII BAC Library Solanum lycopers... 46 2.2 1 (DE960663) Macropus eugenii DNA, BAC clone: MEB1-162A23_R, 3... 46 2.2 1 (AC214855) Pan troglodytes chromosome 7 clone CH251-311M8, W... 34 2.2 5 (FF576670) TTEEB53THB Tetrahymena thermophila conjugation cD... 36 2.3 3 (CT814469) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.4 3 (ES640346) NVPEI23TR NVPA Nasonia vitripennis cDNA, mRNA seq... 34 2.4 3 (CT761224) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.4 3 (CT804240) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.5 3 (CT804451) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.6 3 (CT743080) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.8 3 (CT796602) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 2.9 3 (CT823009) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 3.2 3 (CT793534) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 3.3 3 (CT753193) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 3.5 3 (CT793677) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.2 3 (CT811709) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.4 3 (CT757137) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.5 3 (CT785253) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.5 3 (AC129291) Mus musculus BAC clone RP24-491O22 from chromosom... 38 4.6 5 (CT802395) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.7 3 (CT783998) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 4.9 3 (CP000915) Francisella tularensis subsp. mediasiatica FSC147... 34 4.9 19 (CT785821) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 5.0 3 (CT802854) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 5.1 3 (AC099572) Mus musculus chromosome 15, clone RP23-16A17, com... 36 5.2 3 (CT813871) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 5.8 3 (CT738670) Paramecium tetraurelia 3-PRIME EST from clone LK0... 32 6.1 3 (CT791115) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 6.7 3 (CT801457) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 6.9 3 (CT782074) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 6.9 3 (CT813971) Paramecium tetraurelia 5-PRIME EST from clone LK0... 32 7.2 3 (CT795113) Paramecium tetraurelia 3-PRIME EST from clone LK0... 32 8.3 3 (AL808106) Mouse DNA sequence from clone RP23-281P6 on chrom... 44 8.6 1 (AC132585) Mus musculus BAC clone RP24-355K7 from chromosome... 44 8.6 1 (AC079243) Mus musculus strain C57BL6/J chromosome 6 clone R... 44 8.6 1 (CP000585) Ostreococcus lucimarinus CCE9901 chromosome 5, co... 44 8.6 1 (AC091067) Homo sapiens chromosome 18, clone RP11-702M18, co... 44 8.6 1 (AC015861) Homo sapiens, clone RP11-45A1, complete sequence. 44 8.6 1 (AC142486) Rattus norvegicus clone CH230-522E23, *** SEQUENC... 44 8.6 1 (AC136855) Rattus norvegicus clone CH230-70O16, *** SEQUENCI... 44 8.6 1 (AC134515) Rattus norvegicus clone CH230-10I6, *** SEQUENCIN... 44 8.6 1 (AC134104) Rattus norvegicus clone CH230-12I13, *** SEQUENCI... 44 8.6 1 (AC133713) Rattus norvegicus clone CH230-74P16, WORKING DRAF... 44 8.6 1 (AC133484) Rattus norvegicus clone CH230-191C3, *** SEQUENCI... 44 8.6 1 (AC132723) Rattus norvegicus clone CH230-40C15, *** SEQUENCI... 44 8.6 1 (AC131809) Rattus norvegicus clone CH230-120F17, *** SEQUENC... 44 8.6 1 (AC131444) Rattus norvegicus clone CH230-5A7, *** SEQUENCING... 44 8.6 1 (AC131442) Rattus norvegicus clone CH230-5A10, *** SEQUENCIN... 44 8.6 1 (AC131367) Rattus norvegicus clone CH230-58B20, WORKING DRAF... 44 8.6 1 (AC130617) Rattus norvegicus clone CH230-150K4, *** SEQUENCI... 44 8.6 1 (AC128778) Rattus norvegicus clone CH230-427E20, *** SEQUENC... 44 8.6 1 (AC127978) Rattus norvegicus clone CH230-342M6, *** SEQUENCI... 44 8.6 1 (AC126890) Rattus norvegicus clone CH230-181P16, WORKING DRA... 44 8.6 1 (AC126632) Rattus norvegicus clone CH230-440I11, WORKING DRA... 44 8.6 1 (AC122066) Rattus norvegicus clone CH230-57G16, WORKING DRAF... 44 8.6 1 (AC119110) Rattus norvegicus clone CH230-259O14, *** SEQUENC... 44 8.6 1 (AC118838) Rattus norvegicus clone CH230-216L16, *** SEQUENC... 44 8.6 1 (AC114203) Rattus norvegicus clone CH230-216M17, WORKING DRA... 44 8.6 1 (AC114118) Rattus norvegicus clone CH230-12I3, *** SEQUENCIN... 44 8.6 1 (AC113750) Rattus norvegicus clone CH230-186O6, *** SEQUENCI... 44 8.6 1 (AC112765) Rattus norvegicus clone CH230-197J17, *** SEQUENC... 44 8.6 1 (AC111930) Rattus norvegicus clone CH230-154D3, WORKING DRAF... 44 8.6 1 (AC110386) Rattus norvegicus clone CH230-275F2, *** SEQUENCI... 44 8.6 1 (AC108658) Rattus norvegicus clone CH230-93H13, *** SEQUENCI... 44 8.6 1 (AC106116) Rattus norvegicus clone CH230-18P4, *** SEQUENCIN... 44 8.6 1 (AC105824) Rattus norvegicus chromosome 18 clone CH230-141H1... 44 8.6 1 (AC105604) Rattus norvegicus chromosome 18 clone CH230-166N1... 44 8.6 1 (AC099002) Rattus norvegicus clone CH230-116I21, *** SEQUENC... 44 8.6 1 (AC098608) Rattus norvegicus clone CH230-149B18, *** SEQUENC... 44 8.6 1 (AC098542) Rattus norvegicus clone CH230-99J13, WORKING DRAF... 44 8.6 1 (AC098343) Rattus norvegicus clone CH230-1P15, *** SEQUENCIN... 44 8.6 1 (AC097760) Rattus norvegicus clone CH230-78E1, *** SEQUENCIN... 44 8.6 1 (AC096464) Rattus norvegicus clone CH230-109B16, *** SEQUENC... 44 8.6 1 (AC096015) Rattus norvegicus clone CH230-29G18, WORKING DRAF... 44 8.6 1 (AC094334) Rattus norvegicus clone CH230-3J9, *** SEQUENCING... 44 8.6 1 (CU074328) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 8.6 1 (AP002441) Homo sapiens genomic DNA, chromosome 18q22 clone:... 44 8.6 1 (AC216502) Muntiacus muntjak vaginalis clone CH244-65I19, WO... 44 8.6 1 (AC194379) Zea mays chromosome 4 clone ZMMBBb-582E12; ZMMBBb... 44 8.6 1
>(AU263449) Dictyostelium discoideum vegetative cDNA clone:VSE877, 3' end single read. Length = 705
Score = 1243 bits (627), Expect = 0.0 Identities = 627/627 (100%) Strand = Plus / Plus
Query: 159 aaattgttgataaagtagaccaacttcacctcgaacgtgagtttgtaaagatttcagaat 218 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 aaattgttgataaagtagaccaacttcacctcgaacgtgagtttgtaaagatttcagaat 60
Query: 219 tattaactgaaggtcacaaacaatatccagaagatgtcgagataatgtggagacttgcca 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 tattaactgaaggtcacaaacaatatccagaagatgtcgagataatgtggagacttgcca 120
Query: 279 gatcatactttgacaagaatgaagaagtcgctaataaagatgaaaagaaaaaactcattg 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 121 gatcatactttgacaagaatgaagaagtcgctaataaagatgaaaagaaaaaactcattg 180
Query: 339 aacaagctttagaacttaccaacaaagcctcaactattaacccaaatcattgggctgttc 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 181 aacaagctttagaacttaccaacaaagcctcaactattaacccaaatcattgggctgttc 240
Query: 399 ataaatggttagcaattttaatttcagctttaggtgatcatatttcatcaaaagaaaaga 458 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 241 ataaatggttagcaattttaatttcagctttaggtgatcatatttcatcaaaagaaaaga 300
Query: 459 ttgcaaatgcattcaaaatcaaagatcatgcagtcaaagcaaatgaattaaaaccaaatg 518 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 301 ttgcaaatgcattcaaaatcaaagatcatgcagtcaaagcaaatgaattaaaaccaaatg 360
Query: 519 atgcaaccacattacatttattaggtcgttggtgtttctcaatttcctcaattggttgga 578 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 361 atgcaaccacattacatttattaggtcgttggtgtttctcaatttcctcaattggttgga 420
Query: 579 ttgaaagaactgccgccagcgctttgtttggaaccccaccaacatcaacttatgatgaag 638 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 421 ttgaaagaactgccgccagcgctttgtttggaaccccaccaacatcaacttatgatgaag 480
Query: 639 ctttgacttactttttagaagcatacaaatgtgacccaaccaacattcgtaacgccctct 698 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 481 ctttgacttactttttagaagcatacaaatgtgacccaaccaacattcgtaacgccctct 540
Query: 699 tcactggtgacacctatgctgcccttaaagataatgccaaagctaaagagttttacaaaa 758 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 541 tcactggtgacacctatgctgcccttaaagataatgccaaagctaaagagttttacaaaa 600
Query: 759 ttgctgctgcaatcgaaccaaaatcag 785 ||||||||||||||||||||||||||| Sbjct: 601 ttgctgctgcaatcgaaccaaaatcag 627
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 934,359,152 Number of extensions: 59380320 Number of successful extensions: 4461456 Number of sequences better than 10.0: 125 Length of query: 862 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 838 Effective length of database: 97,308,875,965 Effective search space: 81544838058670 Effective search space used: 81544838058670 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.11 |
Homology vs Protein |
Query= Contig-U14351-1 (Contig-U14351-1Q) /CSM_Contig/Contig-U14351-1Q.Seq.d (862 letters)
Database: nrp_B 3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
BC054253_1(BC054253|pid:none) Xenopus laevis microtubule-associa... 170 6e-41 BC088015_1(BC088015|pid:none) Xenopus tropicalis hypothetical LO... 167 3e-40 AY028171_5(AY028171|pid:none) Leishmania donovani extra chromoso... 161 2e-38 (Q4G069) RecName: Full=Regulator of microtubule dynamics protein... 159 9e-38 CT005258_151(CT005258|pid:none) Leishmania major strain Friedlin... 159 1e-37 AF151848_1(AF151848|pid:none) Homo sapiens CGI-90 protein mRNA, ... 158 3e-37 (Q96DB5) RecName: Full=Regulator of microtubule dynamics protein... 158 3e-37 (Q5R8E4) RecName: Full=Regulator of microtubule dynamics protein... 158 3e-37 (Q32KL4) RecName: Full=Regulator of microtubule dynamics protein... 157 6e-37 AK002442_1(AK002442|pid:none) Mus musculus adult male kidney cDN... 151 2e-35 BC025158_1(BC025158|pid:none) Mus musculus family with sequence ... 151 2e-35 AK010421_1(AK010421|pid:none) Mus musculus ES cells cDNA, RIKEN ... 151 2e-35 (Q9DCV4) RecName: Full=Regulator of microtubule dynamics protein... 151 2e-35 BC151918_1(BC151918|pid:none) Danio rerio zgc:171674, mRNA (cDNA... 149 9e-35 (Q5EAU9) RecName: Full=Regulator of microtubule dynamics protein... 128 3e-28 DQ215526_1(DQ215526|pid:none) Taeniopygia guttata clone 0063P003... 127 4e-28 Z81526_3(Z81526|pid:none) Caenorhabditis elegans Cosmid F33H2, c... 123 7e-27 FN357708_11(FN357708|pid:none) Schistosoma mansoni genome sequen... 122 2e-26 T18764(T18764) hypothetical protein B0491.3 - Caenorhabditis ele... 120 6e-26 Z81042_6(Z81042|pid:none) Caenorhabditis elegans Cosmid C27H6, c... 118 3e-25 T19537(T19537) hypothetical protein C27H6.4 - Caenorhabditis ele... 118 3e-25 Z81042_8(Z81042|pid:none) Caenorhabditis elegans Cosmid C27H6, c... 118 3e-25 FN317939_1(FN317939|pid:none) Schistosoma japonicum isolate Anhu... 117 4e-25 (Q2TBQ7) RecName: Full=Regulator of microtubule dynamics protein... 115 2e-24 BC109797_1(BC109797|pid:none) Bos taurus family with sequence si... 115 2e-24 (Q95LL7) RecName: Full=Regulator of microtubule dynamics protein... 114 4e-24 AK303122_1(AK303122|pid:none) Homo sapiens cDNA FLJ53118 complet... 114 4e-24 AF450129_1(AF450129|pid:none) Homo sapiens BLOCK18 gene, exon 15... 114 5e-24 AF435956_1(AF435956|pid:none) Homo sapiens unknown mRNA. 114 5e-24 (Q8NHM0) RecName: Full=Regulator of microtubule dynamics protein... 114 5e-24 (Q66H15) RecName: Full=Regulator of microtubule dynamics protein... 113 7e-24 AY811423_1(AY811423|pid:none) Schistosoma japonicum SJCHGC06109 ... 113 7e-24 BC163078_1(BC163078|pid:none) Danio rerio family with sequence s... 112 2e-23 AB070101_1(AB070101|pid:none) Macaca fascicularis testis cDNA cl... 112 2e-23 (Q498D5) RecName: Full=Regulator of microtubule dynamics protein... 111 3e-23 AK146299_1(AK146299|pid:none) Mus musculus CRL-1722 L5178Y-R cDN... 111 4e-23 (Q3UJU9) RecName: Full=Regulator of microtubule dynamics protein... 109 1e-22 AK153322_1(AK153322|pid:none) Mus musculus bone marrow macrophag... 109 1e-22 BC055754_1(BC055754|pid:none) Mus musculus family with sequence ... 109 1e-22 AB070026_1(AB070026|pid:none) Macaca fascicularis testis cDNA cl... 108 2e-22 AC016689_1(AC016689|pid:none) Homo sapiens BAC clone RP11-81H20 ... 107 5e-22 AK057516_1(AK057516|pid:none) Homo sapiens cDNA FLJ32954 fis, cl... 107 5e-22 (Q5R6Z1) RecName: Full=Regulator of microtubule dynamics protein... 106 9e-22 (Q8BSE0) RecName: Full=Regulator of microtubule dynamics protein... 105 1e-21 AB000782_1(AB000782|pid:none) Homo sapiens hucep-10 mRNA for cer... 105 1e-21 AJ242719_1(AJ242719|pid:none) Homo sapiens mRNA for partial puta... 105 3e-21 BC008970_1(BC008970|pid:none) Homo sapiens family with sequence ... 105 3e-21 (Q1JQC5) RecName: Full=Regulator of microtubule dynamics protein... 104 3e-21 AK297896_1(AK297896|pid:none) Homo sapiens cDNA FLJ59260 complet... 103 1e-20 BC024059_1(BC024059|pid:none) Mus musculus family with sequence ... 102 1e-20 AK095462_1(AK095462|pid:none) Homo sapiens cDNA FLJ38143 fis, cl... 98 4e-19 CP001101_1372(CP001101|pid:none) Chlorobium phaeobacteroides BS1... 87 9e-16 CP000607_942(CP000607|pid:none) Chlorobium phaeovibrioides DSM 2... 83 1e-14 AY811802_1(AY811802|pid:none) Schistosoma japonicum SJCHGC09126 ... 81 5e-14 CP000108_1124(CP000108|pid:none) Chlorobium chlorochromatii CaD3... 80 9e-14 AK123192_1(AK123192|pid:none) Homo sapiens cDNA FLJ41198 fis, cl... 80 1e-13 T25913(T25913) hypothetical protein T23B3.3 - Caenorhabditis ele... 76 1e-12 CP001100_2019(CP001100|pid:none) Chloroherpeton thalassium ATCC ... 73 1e-11 CP000159_834(CP000159|pid:none) Salinibacter ruber DSM 13855, co... 70 1e-10 CP000383_3562(CP000383|pid:none) Cytophaga hutchinsonii ATCC 334... 67 6e-10 AP009153_792(AP009153|pid:none) Gemmatimonas aurantiaca T-27 DNA... 65 3e-09 CP001032_583(CP001032|pid:none) Opitutus terrae PB90-1, complete... 62 3e-08 CP000482_2707(CP000482|pid:none) Pelobacter propionicus DSM 2379... 62 3e-08 CP000585_245(CP000585|pid:none) Ostreococcus lucimarinus CCE9901... 59 3e-07 AY814877_1(AY814877|pid:none) Schistosoma japonicum SJCHGC06798 ... 53 1e-05 FN357340_36(FN357340|pid:none) Schistosoma mansoni genome sequen... 50 7e-05 CR760019_1(CR760019|pid:none) Xenopus tropicalis finished cDNA, ... 50 7e-05 CP001100_494(CP001100|pid:none) Chloroherpeton thalassium ATCC 3... 50 1e-04 CP000859_1516(CP000859|pid:none) Desulfococcus oleovorans Hxd3, ... 49 3e-04 CP001359_1601(CP001359|pid:none) Anaeromyxobacter dehalogenans 2... 48 5e-04 CP001080_329(CP001080|pid:none) Sulfurihydrogenibium sp. YO3AOP1... 47 8e-04 CP001131_1510(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 47 0.001 CP001089_2075(CP001089|pid:none) Geobacter lovleyi SZ, complete ... 44 0.005 AP009552_1426(AP009552|pid:none) Microcystis aeruginosa NIES-843... 44 0.007 AE001437_1052(AE001437|pid:none) Clostridium acetobutylicum ATCC... 44 0.009 CP001099_1350(CP001099|pid:none) Chlorobaculum parvum NCIB 8327,... 44 0.009 AE001437_1055(AE001437|pid:none) Clostridium acetobutylicum ATCC... 43 0.015 CP000393_2497(CP000393|pid:none) Trichodesmium erythraeum IMS101... 43 0.015 CP000251_2338(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 42 0.020 AX971338_1(AX971338|pid:none) Sequence 2141 from Patent EP1104808. 42 0.034 AB171044_1(AB171044|pid:none) Macaca fascicularis brain cDNA clo... 42 0.034 CP000526_2543(CP000526|pid:none) Burkholderia mallei SAVP1 chrom... 41 0.059 CP000010_401(CP000010|pid:none) Burkholderia mallei ATCC 23344 c... 41 0.059 CP000804_209(CP000804|pid:none) Roseiflexus castenholzii DSM 139... 41 0.059 CP000572_2927(CP000572|pid:none) Burkholderia pseudomallei 1106a... 40 0.13 CP000124_2970(CP000124|pid:none) Burkholderia pseudomallei 1710b... 40 0.13 CR380949_68(CR380949|pid:none) Candida glabrata strain CBS138 ch... 38 0.38 AE009951_1395(AE009951|pid:none) Fusobacterium nucleatum subsp. ... 38 0.38 CP000053_1394(CP000053|pid:none) Rickettsia felis URRWXCal2, com... 38 0.38 CT573073_804(CT573073|pid:none) Kuenenia stuttgartiensis genome ... 38 0.38 CP000393_407(CP000393|pid:none) Trichodesmium erythraeum IMS101,... 38 0.50 CR382125_906(CR382125|pid:none) Kluyveromyces lactis strain NRRL... 38 0.50 CP000360_4598(CP000360|pid:none) Acidobacteria bacterium Ellin34... 37 0.65 FJ496648_16(FJ496648|pid:none) Salmonella enterica subsp. salama... 37 0.65 CT573072_559(CT573072|pid:none) Kuenenia stuttgartiensis genome ... 37 0.65 AF113847_1(AF113847|pid:none) Drosophila melanogaster kismet (ki... 37 0.85 AF491946_1(AF491946|pid:none) Plasmodium vivax isolate IEC-Brazi... 37 0.85 AE014134_63(AE014134|pid:none) Drosophila melanogaster chromosom... 37 0.85 AE017226_1044(AE017226|pid:none) Treponema denticola ATCC 35405,... 37 0.85 FP102531_63(FP102531|pid:none) magnetite-containing magnetic vib... 37 0.85 AF491950_1(AF491950|pid:none) Plasmodium vivax strain Ong merozo... 37 0.85 CP001287_140(CP001287|pid:none) Cyanothece sp. PCC 8801, complet... 37 0.85 AE014134_62(AE014134|pid:none) Drosophila melanogaster chromosom... 37 0.85 (P38042) RecName: Full=Anaphase-promoting complex subunit CDC27;... 37 1.1 X79489_36(X79489|pid:none) S.cerevisiae genomic DNA, chromosome ... 37 1.1 CP000742_88(CP000742|pid:none) Methanococcus vannielii SB, compl... 37 1.1 CP000821_845(CP000821|pid:none) Shewanella sediminis HAW-EB3, co... 37 1.1 AP009380_1340(AP009380|pid:none) Porphyromonas gingivalis ATCC 3... 37 1.1 AE017180_2600(AE017180|pid:none) Geobacter sulfurreducens PCA, c... 37 1.1 CP000941_2101(CP000941|pid:none) Xylella fastidiosa M12, complet... 36 1.4 CP000806_1237(CP000806|pid:none) Cyanothece sp. ATCC 51142 circu... 36 1.4 AM920428_237(AM920428|pid:none) Penicillium chrysogenum Wisconsi... 36 1.4 T09748(T09748;C64246)DNA-directed DNA polymerase (EC 2.7.7.7) II... 36 1.4 AE000666_69(AE000666|pid:none) Methanothermobacter thermautotrop... 36 1.4 CP000109_1721(CP000109|pid:none) Thiomicrospira crunogena XCL-2,... 36 1.9 CP000446_3127(CP000446|pid:none) Shewanella sp. MR-4, complete g... 36 1.9 CP001348_2591(CP001348|pid:none) Clostridium cellulolyticum H10,... 36 1.9 T21710(T21710)hypothetical protein F33H2.6 - Caenorhabditis eleg... 36 1.9 AF491951_1(AF491951|pid:none) Plasmodium vivax from Bangladesh m... 36 1.9 CP000350_1831(CP000350|pid:none) Leptospira borgpetersenii serov... 36 1.9 CU928174_159(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 36 1.9 AF491948_1(AF491948|pid:none) Plasmodium vivax isolate IEC-Brazi... 35 2.5 AY833018_1(AY833018|pid:none) Plasmodium vivax strain Thailand M... 35 2.5 AM114193_526(AM114193|pid:none) Uncultured methanogenic archaeon... 35 2.5 CP001322_133(CP001322|pid:none) Desulfatibacillum alkenivorans A... 35 2.5 CP000993_182(CP000993|pid:none) Borrelia recurrentis A1, complet... 35 2.5 CP000553_44(CP000553|pid:none) Prochlorococcus marinus str. NATL... 35 3.2 AM746676_2815(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 35 3.2 AE000657_977(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 35 3.2 (P43016) RecName: Full=Transcriptional regulator hilA; ... 35 3.2 AJ864949_1(AJ864949|pid:none) Plasmodium vivax partial msp3a gen... 35 3.2 A52315_1(A52315|pid:none) Sequence 19 from Patent EP0721989. &X... 35 3.2 CP001291_1331(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 3.2 CP000360_287(CP000360|pid:none) Acidobacteria bacterium Ellin345... 35 3.2 EU016579_19(EU016579|pid:none) Uncultured marine microorganism H... 35 4.2 AM039952_183(AM039952|pid:none) Xanthomonas campestris pv. vesic... 35 4.2 CP001107_3612(CP001107|pid:none) Eubacterium rectale ATCC 33656,... 35 4.2 AE000513_1179(AE000513|pid:none) Deinococcus radiodurans R1 chro... 35 4.2 EU430584_1(EU430584|pid:none) Plasmodium vivax merozoite surface... 35 4.2 CP001291_4612(CP001291|pid:none) Cyanothece sp. PCC 7424, comple... 35 4.2 CP000473_5901(CP000473|pid:none) Solibacter usitatus Ellin6076, ... 35 4.2 CP000469_793(CP000469|pid:none) Shewanella sp. ANA-3, complete g... 35 4.2 AE017221_263(AE017221|pid:none) Thermus thermophilus HB27, compl... 35 4.2 CP000863_1835(CP000863|pid:none) Acinetobacter baumannii ACICU, ... 34 5.5 AE017354_2437(AE017354|pid:none) Legionella pneumophila subsp. p... 34 5.5 CP000993_692(CP000993|pid:none) Borrelia recurrentis A1, complet... 34 5.5 CP000675_2644(CP000675|pid:none) Legionella pneumophila str. Cor... 34 5.5 CR628337_2415(CR628337|pid:none) Legionella pneumophila str. Len... 34 5.5 CP000350_53(CP000350|pid:none) Leptospira borgpetersenii serovar... 34 5.5 CP000086_475(CP000086|pid:none) Burkholderia thailandensis E264 ... 34 5.5 AF491949_1(AF491949|pid:none) Plasmodium vivax isolate IEC-Brazi... 34 5.5 CP000521_1934(CP000521|pid:none) Acinetobacter baumannii ATCC 17... 34 5.5 CP000099_2442(CP000099|pid:none) Methanosarcina barkeri str. Fus... 34 5.5 CP000254_2327(CP000254|pid:none) Methanospirillum hungatei JF-1,... 34 5.5 CP000976_703(CP000976|pid:none) Borrelia duttonii Ly, complete g... 34 5.5 CP001229_1338(CP001229|pid:none) Sulfurihydrogenibium azorense A... 34 7.2 CP001357_1935(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 34 7.2 CP000103_375(CP000103|pid:none) Nitrosospira multiformis ATCC 25... 34 7.2 CP001052_1181(CP001052|pid:none) Burkholderia phytofirmans PsJN ... 34 7.2 FN321283_1(FN321283|pid:none) Schistosoma japonicum isolate Anhu... 34 7.2 BA000028_1779(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 34 7.2 AP009384_2926(AP009384|pid:none) Azorhizobium caulinodans ORS 57... 34 7.2 FN321286_1(FN321286|pid:none) Schistosoma japonicum isolate Anhu... 34 7.2 CP001390_3456(CP001390|pid:none) Geobacter sp. FRC-32, complete ... 34 7.2 CP000251_1205(CP000251|pid:none) Anaeromyxobacter dehalogenans 2... 34 7.2 FN321289_1(FN321289|pid:none) Schistosoma japonicum isolate Anhu... 34 7.2 AM912960_1(AM912960|pid:none) Uncultured bacterium partial integ... 33 9.4 AC116960_63(AC116960|pid:none) Dictyostelium discoideum chromoso... 33 9.4 AE015927_1584(AE015927|pid:none) Clostridium tetani E88, complet... 33 9.4 (Q8BW49) RecName: Full=Tetratricopeptide repeat protein 12; ... 33 9.4 AK076457_1(AK076457|pid:none) Mus musculus 0 day neonate head cD... 33 9.4 CP001503_827(CP001503|pid:none) Burkholderia glumae BGR1 chromos... 33 9.4 CR954204_74(CR954204|pid:none) Ostreococcus tauri strain OTTH059... 33 9.4 CT573071_845(CT573071|pid:none) Kuenenia stuttgartiensis genome ... 33 9.4 AM494964_123(AM494964|pid:none) Leishmania braziliensis chromoso... 33 9.4 CP000786_2307(CP000786|pid:none) Leptospira biflexa serovar Pato... 33 9.4 CP000393_1249(CP000393|pid:none) Trichodesmium erythraeum IMS101... 33 9.4
>BC054253_1(BC054253|pid:none) Xenopus laevis microtubule-associated protein, mRNA (cDNA clone MGC:64464 IMAGE:6880991), complete cds. Length = 308
Score = 170 bits (430), Expect = 6e-41 Identities = 89/227 (39%), Positives = 139/227 (61%), Gaps = 2/227 (0%) Frame = +2
Query: 155 QEIVDKVDQLHLEREFVKISELLTEGHKQYPEDVEIMWRLARSYFDKNE-EVANKDEKKK 331 ++IV++ D L+ E +K+ ELL++ + D E++WRLAR+ D +DEKK+ Sbjct: 78 EDIVEQADYLYGSGETIKLYELLSQYKDR--NDAELLWRLARAARDMTLLSTTPRDEKKR 135
Query: 332 LIEQALELTNKASTINPNHWAVHKWLAILISALGDHISSKEKIANAFKIKDHAVKANELK 511 L+ ++ + KA ++ WA HKW +I +S +GD+ K KI NA+ +K+H +A EL Sbjct: 136 LVYESFDCAKKALEVDELCWAAHKWYSICLSNVGDYEGIKTKIGNAYIVKEHLERAKELN 195
Query: 512 PNDATTLHLLGRWCFSISSIGWIERTAASALFGTPPTSTYDEALTYFLEAYKCDP-TNIR 688 P DATT+H++G WC+ + + W + ASALFGTPP++T++EALTYFL+A + DP Sbjct: 196 PKDATTIHIIGVWCYMFADLPWYQVKIASALFGTPPSATFEEALTYFLQAEEVDPHFYST 255
Query: 689 NALFTGDTYAALKDNAKAKEFYKIAAAIEPKSEFDKNLVKEAQNKAK 829 N LF G TY LK+ + A ++ A +S+ D + KEA + K Sbjct: 256 NLLFLGKTYLKLKNKSLALDWLTKAKDFPARSDEDIEVQKEATDLLK 302
Lambda K H 0.318 0.134 0.401
Gapped Lambda K H 0.267 0.0410 0.140
Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3236559 Number of Hits to DB: 1,200,976,644 Number of extensions: 20912658 Number of successful extensions: 55524 Number of sequences better than 10.0: 177 Number of HSP's gapped: 55382 Number of HSP's successfully gapped: 185 Length of query: 287 Length of database: 1,051,180,864 Length adjustment: 127 Effective length of query: 160 Effective length of database: 640,137,871 Effective search space: 102422059360 Effective search space used: 102422059360 Neighboring words threshold: 12 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 32 (16.9 bits)
|
PSORT |
|
VS (DIR, S) |
3 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |