Contig-U14349-1 |
Contig ID |
Contig-U14349-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
1015 |
Chromosome number (1..6, M) |
2 |
Chromosome length |
8467578 |
Start point |
5536580 |
End point |
5537123 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
31 |
Number of EST |
39 |
Link to clone list |
U14349 |
List of clone(s) |
est1=CHI565F,1,415 est2=VSF674E,46,862 est3=VFA308F,236,819 est4=VFA308Z,237,773 est5=VFA592Z,389,819 est6=VFA592F,390,876 est7=VFL333F,392,876 est8=VFE845F,395,876 est9=VFE845Z,395,852 est10=FC-IC0060F,397,730 est11=FC-IC0300E,397,788 est12=VSD383F,397,876 est13=SSF668E,404,946 est14=VSD383Z,405,784 est15=VSG665F,405,876 est16=VSJ550F,405,876 est17=VSJ550Z,405,784 est18=VSJ584F,405,876 est19=VSJ584Z,405,773 est20=SSF455E,406,979 est21=VSJ437F,406,876 est22=VSJ437Z,406,771 est23=SSM482E,407,875 est24=VSI135Z,408,772 est25=VSJ890F,408,876 est26=VSJ890Z,408,773 est27=SSD370E,410,968 est28=SLE510F,412,863 est29=SLE517E,412,1016 est30=VSE444E,412,900 est31=VSJ243F,412,876 est32=VSJ243Z,412,855 est33=VSI135F,413,876 est34=VSD320F,426,876 est35=VSD320Z,426,772 est36=VSA646Z,429,973 est37=VSE171Z,441,976 est38=FC-IC1535Z,522,788 est39=VSC843Z,822,991
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.21 |
Homology vs DNA |
Query= Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Contig-U14349-1Q.Seq.d (1015 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(C92081) Dictyostelium discoideum slug cDNA, clone SSD370. 777 0.0 2 (AU061515) Dictyostelium discoideum slug cDNA, clone SLE517. 777 0.0 2 (AU262921) Dictyostelium discoideum vegetative cDNA clone:VS... 755 0.0 2 (AU261629) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2 (C92904) Dictyostelium discoideum slug cDNA, clone SSF668. 777 0.0 2 (D37980) Dictyostelium discoideum DDCOF1 gene for cofilin, c... 795 0.0 2 (D37981) Dictyostelium discoideum DDCOF2 gene for cofilin, c... 777 0.0 2 (AU265601) Dictyostelium discoideum vegetative cDNA clone:VS... 785 0.0 1 (AU270641) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU270155) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU270098) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU269915) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU269632) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU268207) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU266706) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU263940) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU263833) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU263109) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1 (AU061513) Dictyostelium discoideum slug cDNA, clone SLE510. 777 0.0 1 (AU039178) Dictyostelium discoideum slug cDNA, clone SSM482. 777 0.0 1 (BJ415648) Dictyostelium discoideum cDNA clone:ddv23b09, 5' ... 777 0.0 1 (BJ411056) Dictyostelium discoideum cDNA clone:ddv2g23, 5' e... 777 0.0 1 (BJ409880) Dictyostelium discoideum cDNA clone:ddv10j12, 5' ... 777 0.0 1 (AU269633) Dictyostelium discoideum vegetative cDNA clone:VS... 775 0.0 1 (BJ427995) Dictyostelium discoideum cDNA clone:ddv10j12, 3' ... 724 0.0 2 (BJ429247) Dictyostelium discoideum cDNA clone:ddv2g23, 3' e... 680 0.0 3 (BJ410612) Dictyostelium discoideum cDNA clone:ddv1p01, 5' e... 379 0.0 4 (AU271494) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 704 0.0 1 (AU271493) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 704 0.0 1 (AU270642) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1 (AU270156) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1 (AU270099) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1 (AU263941) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1 (BJ428777) Dictyostelium discoideum cDNA clone:ddv1p01, 3' e... 666 0.0 1 (AU263834) Dictyostelium discoideum vegetative cDNA clone:VS... 664 0.0 1 (AU269916) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 1 (AU268208) Dictyostelium discoideum vegetative cDNA clone:VS... 486 e-175 3 (AU271324) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 622 e-174 1 (BJ366576) Dictyostelium discoideum cDNA clone:ddc39a17, 5' ... 389 e-129 2 (AC116960) Dictyostelium discoideum chromosome 2 map complem... 389 e-119 5 (AU072933) Dictyostelium discoideum slug cDNA, clone SSF455. 422 e-113 1 (AU275044) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 307 1e-99 2 (C92833) Dictyostelium discoideum slug cDNA, clone SSF455. 194 2e-86 2 (AU035028) Dictyostelium discoideum slug cDNA, clone SLE517. 139 2e-48 2 (X04004) Dictyostelium discoideum mRNA for contact site A (c... 168 3e-37 1 (AU262831) Dictyostelium discoideum vegetative cDNA clone:VS... 155 4e-33 1 (EC761145) PSE00000356 rw_mgpallid Polysphondylium pallidum ... 66 2e-07 2 (EC745624) PSE00004329 rw_mgpallid Polysphondylium pallidum ... 66 3e-06 1 (AC115015) Mus musculus chromosome 3, clone RP24-196A21, com... 60 2e-04 1 (AU265600) Dictyostelium discoideum vegetative cDNA clone:VS... 52 0.042 1 (FE148153) LV_LO_RA003J01r Litopenaeus vannamei lymphoid org... 52 0.042 1 (AF001905) Homo sapiens cosmids E079, B0920 and A8 from Xq25... 36 0.099 2 (AC195067) Pan troglodytes BAC clone CH251-510L5 from chromo... 36 0.099 2 (Z72519) Human DNA sequence from cosmid J138O17, between mar... 36 0.10 2 (AL645820) Human DNA sequence from clone RP1-138O17 on chrom... 36 0.10 2 (AL354655) Human DNA sequence *** SEQUENCING CANCELLED *** f... 36 0.10 2 (FE846078) CAFI539.rev CAFI Pichia stipitis aerobic dextrose... 38 0.11 2 (FE846079) CAFI539.fwd CAFI Pichia stipitis aerobic dextrose... 38 0.11 2 (AC176598) Strongylocentrotus purpuratus clone R3-3077O24, W... 50 0.17 1 (FH982592) CHO_OF6831xf07r1.ab1 CHO_OF6 Nicotiana tabacum ge... 50 0.17 1 (FH645795) CHO_OF4983xc19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.17 1 (ET694320) CHO_OF339xa18r1.ab1 CHO_OF Nicotiana tabacum geno... 50 0.17 1 (CO372225) tah98h10.y1 HyEch JUMY T1 Hydractinia echinata cD... 50 0.17 1 (AJ508546) Platichthys flesus EST, clone pfcato23. 50 0.17 1 (AC210335) Populus trichocarpa clone POP024-E12, complete se... 46 0.32 3 (AC084577) Caenorhabditis briggsae cosmid G39O05, complete s... 46 0.39 2 (AC164154) Mus musculus chromosome 18, clone RP23-60G12, com... 48 0.65 1 (AC164106) Mus musculus BAC clone RP23-445D20 from chromosom... 48 0.65 1 (AP001314) Arabidopsis thaliana genomic DNA, chromosome 3, B... 48 0.65 1 (AC084463) Caenorhabditis briggsae cosmid CB037F21, complete... 48 0.65 1 (AL603914) Human DNA sequence from clone RP11-569A2 on chrom... 48 0.65 1 (AC110774) Homo sapiens BAC clone RP11-254A24 from 4, comple... 48 0.65 1 (AC135933) Rattus norvegicus clone CH230-304J22, *** SEQUENC... 48 0.65 1 (AC111556) Rattus norvegicus clone CH230-163G2, WORKING DRAF... 48 0.65 1 (AL606471) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.65 1 (AC198414) Zea mays chromosome UNKNOWN clone CH201-248J10; Z... 48 0.65 1 (AJ596012) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 0.65 1 (DT768024) EST1201873 Aquilegia cDNA library Aquilegia formo... 48 0.65 1 (DR932462) EST1124001 Aquilegia cDNA library Aquilegia formo... 48 0.65 1 (DR927105) EST1118644 Aquilegia cDNA library Aquilegia formo... 48 0.65 1 (FG379614) CBHG1935.fwd CBHG Trichoderma virens strain Gv29-... 48 0.65 1 (FG379613) CBHG1935.rev CBHG Trichoderma virens strain Gv29-... 48 0.65 1 (AC103293) Rattus norvegicus clone CH230-67J14, *** SEQUENCI... 38 1.2 3 (BH473033) BOGVY18TR BOGV Brassica oleracea genomic clone BO... 42 2.0 2 (EJ009867) 1095403625470 Global-Ocean-Sampling_GS-26-01-01-1... 38 2.3 2 (AC102923) Mus musculus chromosome 1, clone RP24-262J2, comp... 46 2.6 1 (AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 46 2.6 1 (AC178933) Strongylocentrotus purpuratus clone R3-3115M23, W... 46 2.6 1 (AC178181) Strongylocentrotus purpuratus clone R3-3082C2, WO... 46 2.6 1 (AC175845) Strongylocentrotus purpuratus clone R3-15L20, WOR... 46 2.6 1 (EJ285442) 1095368018918 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.6 1 (EJ248699) 1095344005045 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.6 1 (EI107952) ChBa_A_024D11.x01 Chesapeake Bay viral metagenome... 46 2.6 1 (AL199414) Tetraodon nigroviridis genome survey sequence T7 ... 46 2.6 1 (DE563481) Bombyx mori genomic DNA, Fosmid clone:GBMFno205_h... 46 2.6 1 (DE352499) Bombyx mori genomic DNA, BAC clone:BET_070_I23. 46 2.6 1 (CC234827) CH261-7N19_RM1.2 CH261 Gallus gallus genomic clon... 46 2.6 1 (DW061287) CLLY13746.b1_D06.ab1 CLL(XYZ) lettuce saligna Lac... 46 2.6 1 (DR915286) EST1106825 Aquilegia cDNA library Aquilegia formo... 46 2.6 1 (DN910276) Cuc4_4_B11 Cucumber fruit development cDNA librar... 46 2.6 1
>(C92081) Dictyostelium discoideum slug cDNA, clone SSD370. Length = 559
Score = 777 bits (392), Expect(2) = 0.0 Identities = 392/392 (100%) Strand = Plus / Plus
Query: 433 gtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgatttaaagttagg 492 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 24 gtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgatttaaagttagg 83
Query: 493 tcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaatcattgttga 552 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 84 tcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaatcattgttga 143
Query: 553 ctccaccttaccagctggttgttcattcgatgaattcaccaaatgtctcccagaaaacga 612 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 144 ctccaccttaccagctggttgttcattcgatgaattcaccaaatgtctcccagaaaacga 203
Query: 613 atgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaagagcaaaat 672 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 204 atgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaagagcaaaat 263
Query: 673 ctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgatggccacctc 732 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 264 ctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgatggccacctc 323
Query: 733 atcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatccaaggtaccga 792 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 324 atcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatccaaggtaccga 383
Query: 793 tgcctctgaagtcaaagattcatgtttctatg 824 |||||||||||||||||||||||||||||||| Sbjct: 384 tgcctctgaagtcaaagattcatgtttctatg 415
Score = 163 bits (82), Expect(2) = 0.0 Identities = 82/82 (100%) Strand = Plus / Plus
Query: 884 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 943 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 475 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 534
Query: 944 aataaaataatctgtattttct 965 |||||||||||||||||||||| Sbjct: 535 aataaaataatctgtattttct 556
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 935,617,047 Number of extensions: 58063193 Number of successful extensions: 4956018 Number of sequences better than 10.0: 136 Length of query: 1015 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 991 Effective length of database: 97,308,875,965 Effective search space: 96433096081315 Effective search space used: 96433096081315 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
14 |
VH (FL, L) |
0 |
VF (FL, S) |
4 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
2 |
SS (DIR, S) |
4 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
3 |
FC-IC (SUB) |
3 |