Contig-U14349-1
Contig ID Contig-U14349-1
Contig update 2002.12.18
Contig sequence
>Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Contig-U14349-1Q.Seq.d
GCCTACTGGAAAATTTTATATTTAAATAAACACACATACCTATGTTAGTA
ATCACCATAAATAATAATAATAAAACAATAAATAATTAAAAAAAATAAAA
AAATAAAAAAAAATTTATGGACGAACATAATAATAGTAGTACCATTATTA
TCAGCAATAATGTTTCACAAGATAGAATTGAAACATCNCAAGAAAGAAGA
AGTAGTAGAAGAAGAGTAATTTTAAATAGTAACAACAATGAAATTTTCAG
TCACCAAGAGGATTTGAGTACTCAACAAGGAGAATATATATTGGATTCAT
CTTTTANAAACAGGGATAATAATAATAATAATAATAATAATAATAATAAT
AATAATAATAATAATAATAATAAAAATAATATTAATAATAAATTTTTTTT
TATTATTATATTTTTAAAAAAAACTATTTATAGTCTTCAGGTATTGCTTT
AGCTCCAAACTGCGTTTCAACCTTCAACGATTTAAAGTTAGGTCGTAAAT
ATGGTGGTATCATCTACAGAATCTCTGACGATTCAAAAGAAATCATTGTT
GACTCCACCTTACCAGCTGGTTGTTCATTCGATGAATTCACCAAATGTCT
CCCAGAAAACGAATGTAGATACGTTGTCCTCGACTATCAATACAAAGAAG
AAGGTGCCCAAAAGAGCAAAATCTGTTTTGTTGCCTGGTGCCCAGATACC
GCCAACATTAAAAAGAAAATGATGGCCACCTCATCAAAAGACTCTTTACG
TAAAGCCTGTGTTGGTATCCAAGTTGAAATCCAAGGTACCGATGCCTCTG
AAGTCAAAGATTCATGTTTCTATGAAAAATGTACCAAAATCTAAATAATT
TGAAAAAATTTAAAAAAAAAAAAAAAAAAAAAACTCCCGAGGAACGAATT
CAATATTTATAAATAGTAATAAATCTCCTCATACATATAATTTAATAAAA
TAATCTGTATTTTCTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA

Gap no gap
Contig length 1015
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 5536580
End point 5537123
Strand (PLUS/MINUS) PLUS
Number of clones 31
Number of EST 39
Link to clone list U14349
List of clone(s)

est1=CHI565F,1,415
est2=VSF674E,46,862
est3=VFA308F,236,819
est4=VFA308Z,237,773
est5=VFA592Z,389,819
est6=VFA592F,390,876
est7=VFL333F,392,876
est8=VFE845F,395,876
est9=VFE845Z,395,852
est10=FC-IC0060F,397,730
est11=FC-IC0300E,397,788
est12=VSD383F,397,876
est13=SSF668E,404,946
est14=VSD383Z,405,784
est15=VSG665F,405,876
est16=VSJ550F,405,876
est17=VSJ550Z,405,784
est18=VSJ584F,405,876
est19=VSJ584Z,405,773
est20=SSF455E,406,979
est21=VSJ437F,406,876
est22=VSJ437Z,406,771
est23=SSM482E,407,875
est24=VSI135Z,408,772
est25=VSJ890F,408,876
est26=VSJ890Z,408,773
est27=SSD370E,410,968
est28=SLE510F,412,863
est29=SLE517E,412,1016
est30=VSE444E,412,900
est31=VSJ243F,412,876
est32=VSJ243Z,412,855
est33=VSI135F,413,876
est34=VSD320F,426,876
est35=VSD320Z,426,772
est36=VSA646Z,429,973
est37=VSE171Z,441,976
est38=FC-IC1535Z,522,788
est39=VSC843Z,822,991
Translated Amino Acid sequence
ptgkfyi*inthtyvsnhhk****nnk*lkkikk*kkiygrt****yhyyqq*cftr*n*
nixrkkk**kksnfk**qq*nfqsprgfeystrriyigfifxkqg***************
****k*y***iffyyyifkknyl*SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKE
IIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKM
MATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkkkkklprnef
niyk***issyi*fnkiicif*kkkkkkkkkkkkkkkk


Translated Amino Acid sequence (All Frames)
Frame A:
aywkilylnkhtylc**sp*iiiikq*iikknkkikknlwtniiivvpllsaimfhkiel
khxkkeevveee*f*ivttmkfsvtkri*vlnkeniywihllxtgiiiiiiiiiiiiiii
iiiikiiliinfflllyf*kklfivfrycfssklrfnlqrfkvrs*iwwyhlqnl*rfkr
nhc*lhltswlfir*ihqmsprkrm*ircprlsiqrrrcpkeqnlfcclvpryrqh*ken
dghlikrlft*slcwyps*npryrcl*sqrfmfl*kmyqnlnnlkkfkkkkkkktpeeri
qyl*ivinllihii**nnlyflkkkkkkkkkkkkkkkk


Frame B:
ptgkfyi*inthtyvsnhhk****nnk*lkkikk*kkiygrt****yhyyqq*cftr*n*
nixrkkk**kksnfk**qq*nfqsprgfeystrriyigfifxkqg***************
****k*y***iffyyyifkknyl*SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKE
IIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKM
MATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEKCTKI*ii*knlkkkkkkklprnef
niyk***issyi*fnkiicif*kkkkkkkkkkkkkkkk


Frame C:
llenfifk*thipmlvitinnnnktinn*kk*knkkkfmdehnnsstiiisnnvsqdrie
tsqerrssrrrvilnsnnneifshqedlstqqgeyildssfxnrdnnnnnnnnnnnnnnn
nnnknninnkfffiiiflkktiyslqvll*lqtafqpsti*s*vvnmvvsstesltiqkk
slltppyqlvvhsmnspnvsqktnvdtlsstintkkkvpkraksvllpgaqipptlkrk*
wpphqktlyvkpvlvsklkskvpmplkskihvsmknvpksk*feki*kkkkkknsrgtns
ifinsnksphtynlik*svfskkkkkkkkkkkkkkkk


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14349-1 (Contig-U14349-1Q)
/CSM_Contig/Contig-U14349-1Q.Seq.d
(1015 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Conti... 850 0.0
Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U11214-1 (Contig-U11214-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U09940-1 (Contig-U09940-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U09219-1 (Contig-U09219-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U06086-1 (Contig-U06086-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U05910-1 (Contig-U05910-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U05246-1 (Contig-U05246-1Q) /CSM_Contig/Conti... 36 0.072
Contig-U14741-1 (Contig-U14741-1Q) /CSM_Contig/Conti... 34 0.28
Contig-U13794-1 (Contig-U13794-1Q) /CSM_Contig/Conti... 34 0.28

>Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Contig-U14349-1Q.Seq.d
Length = 1015

Score = 850 bits (429), Expect = 0.0
Identities = 429/429 (100%)
Strand = Plus / Plus


Query: 424 ctatttatagtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgattt 483
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 ctatttatagtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgattt 483


Query: 484 aaagttaggtcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaat 543
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 484 aaagttaggtcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaat 543


Query: 544 cattgttgactccaccttaccagctggttgttcattcgatgaattcaccaaatgtctccc 603
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cattgttgactccaccttaccagctggttgttcattcgatgaattcaccaaatgtctccc 603


Query: 604 agaaaacgaatgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaa 663
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 agaaaacgaatgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaa 663


Query: 664 gagcaaaatctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgat 723
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 gagcaaaatctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgat 723


Query: 724 ggccacctcatcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatcca 783
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ggccacctcatcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatcca 783


Query: 784 aggtaccgatgcctctgaagtcaaagattcatgtttctatgaaaaatgtaccaaaatcta 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aggtaccgatgcctctgaagtcaaagattcatgtttctatgaaaaatgtaccaaaatcta 843


Query: 844 aataatttg 852
|||||||||
Sbjct: 844 aataatttg 852


Score = 389 bits (196), Expect = e-108
Identities = 202/202 (100%)
Strand = Plus / Plus


Query: 114 tttatggacgaacataataatagtagtaccattattatcagcaataatgtttcacaagat 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 tttatggacgaacataataatagtagtaccattattatcagcaataatgtttcacaagat 173


Query: 174 agaattgaaacatcncaagaaagaagaagtagtagaagaagagtaattttaaatagtaac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 174 agaattgaaacatcncaagaaagaagaagtagtagaagaagagtaattttaaatagtaac 233


Query: 234 aacaatgaaattttcagtcaccaagaggatttgagtactcaacaaggagaatatatattg 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 234 aacaatgaaattttcagtcaccaagaggatttgagtactcaacaaggagaatatatattg 293


Query: 294 gattcatcttttanaaacaggg 315
||||||||||||||||||||||
Sbjct: 294 gattcatcttttanaaacaggg 315


Score = 163 bits (82), Expect = 5e-40
Identities = 82/82 (100%)
Strand = Plus / Plus


Query: 884 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 884 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 943


Query: 944 aataaaataatctgtattttct 965
||||||||||||||||||||||
Sbjct: 944 aataaaataatctgtattttct 965


Score = 109 bits (55), Expect = 6e-24
Identities = 55/55 (100%)
Strand = Plus / Plus


Query: 1 gcctactggaaaattttatatttaaataaacacacatacctatgttagtaatcac 55
|||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcctactggaaaattttatatttaaataaacacacatacctatgttagtaatcac 55


>Contig-U13863-1 (Contig-U13863-1Q) /CSM_Contig/Contig-U13863-1Q.Seq.d
Length = 1323

Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus


Query: 129 aataatagtagtaccattattatca 153
||||||||||||||||||| |||||
Sbjct: 105 aataatagtagtaccattaatatca 129


>Contig-U11214-1 (Contig-U11214-1Q) /CSM_Contig/Contig-U11214-1Q.Seq.d
Length = 920

Score = 36.2 bits (18), Expect = 0.072
Identities = 18/18 (100%)
Strand = Plus / Plus


Query: 1 gcctactggaaaatttta 18
||||||||||||||||||
Sbjct: 4 gcctactggaaaatttta 21


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,827
Number of Sequences: 6905
Number of extensions: 12827
Number of successful extensions: 1497
Number of sequences better than 10.0: 183
length of query: 1015
length of database: 5,674,871
effective HSP length: 16
effective length of query: 999
effective length of database: 5,564,391
effective search space: 5558826609
effective search space used: 5558826609
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.21
Homology vs DNA
Query= Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Contig-U14349-1Q.Seq.d
(1015 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(C92081) Dictyostelium discoideum slug cDNA, clone SSD370. 777 0.0 2
(AU061515) Dictyostelium discoideum slug cDNA, clone SLE517. 777 0.0 2
(AU262921) Dictyostelium discoideum vegetative cDNA clone:VS... 755 0.0 2
(AU261629) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 2
(C92904) Dictyostelium discoideum slug cDNA, clone SSF668. 777 0.0 2
(D37980) Dictyostelium discoideum DDCOF1 gene for cofilin, c... 795 0.0 2
(D37981) Dictyostelium discoideum DDCOF2 gene for cofilin, c... 777 0.0 2
(AU265601) Dictyostelium discoideum vegetative cDNA clone:VS... 785 0.0 1
(AU270641) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU270155) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU270098) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU269915) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU269632) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU268207) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU266706) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU263940) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU263833) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU263109) Dictyostelium discoideum vegetative cDNA clone:VS... 777 0.0 1
(AU061513) Dictyostelium discoideum slug cDNA, clone SLE510. 777 0.0 1
(AU039178) Dictyostelium discoideum slug cDNA, clone SSM482. 777 0.0 1
(BJ415648) Dictyostelium discoideum cDNA clone:ddv23b09, 5' ... 777 0.0 1
(BJ411056) Dictyostelium discoideum cDNA clone:ddv2g23, 5' e... 777 0.0 1
(BJ409880) Dictyostelium discoideum cDNA clone:ddv10j12, 5' ... 777 0.0 1
(AU269633) Dictyostelium discoideum vegetative cDNA clone:VS... 775 0.0 1
(BJ427995) Dictyostelium discoideum cDNA clone:ddv10j12, 3' ... 724 0.0 2
(BJ429247) Dictyostelium discoideum cDNA clone:ddv2g23, 3' e... 680 0.0 3
(BJ410612) Dictyostelium discoideum cDNA clone:ddv1p01, 5' e... 379 0.0 4
(AU271494) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 704 0.0 1
(AU271493) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 704 0.0 1
(AU270642) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1
(AU270156) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1
(AU270099) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1
(AU263941) Dictyostelium discoideum vegetative cDNA clone:VS... 666 0.0 1
(BJ428777) Dictyostelium discoideum cDNA clone:ddv1p01, 3' e... 666 0.0 1
(AU263834) Dictyostelium discoideum vegetative cDNA clone:VS... 664 0.0 1
(AU269916) Dictyostelium discoideum vegetative cDNA clone:VS... 662 0.0 1
(AU268208) Dictyostelium discoideum vegetative cDNA clone:VS... 486 e-175 3
(AU271324) Dictyostelium discoideum gamete cDNA clone:FC-IC0... 622 e-174 1
(BJ366576) Dictyostelium discoideum cDNA clone:ddc39a17, 5' ... 389 e-129 2
(AC116960) Dictyostelium discoideum chromosome 2 map complem... 389 e-119 5
(AU072933) Dictyostelium discoideum slug cDNA, clone SSF455. 422 e-113 1
(AU275044) Dictyostelium discoideum gamete cDNA clone:FC-IC1... 307 1e-99 2
(C92833) Dictyostelium discoideum slug cDNA, clone SSF455. 194 2e-86 2
(AU035028) Dictyostelium discoideum slug cDNA, clone SLE517. 139 2e-48 2
(X04004) Dictyostelium discoideum mRNA for contact site A (c... 168 3e-37 1
(AU262831) Dictyostelium discoideum vegetative cDNA clone:VS... 155 4e-33 1
(EC761145) PSE00000356 rw_mgpallid Polysphondylium pallidum ... 66 2e-07 2
(EC745624) PSE00004329 rw_mgpallid Polysphondylium pallidum ... 66 3e-06 1
(AC115015) Mus musculus chromosome 3, clone RP24-196A21, com... 60 2e-04 1
(AU265600) Dictyostelium discoideum vegetative cDNA clone:VS... 52 0.042 1
(FE148153) LV_LO_RA003J01r Litopenaeus vannamei lymphoid org... 52 0.042 1
(AF001905) Homo sapiens cosmids E079, B0920 and A8 from Xq25... 36 0.099 2
(AC195067) Pan troglodytes BAC clone CH251-510L5 from chromo... 36 0.099 2
(Z72519) Human DNA sequence from cosmid J138O17, between mar... 36 0.10 2
(AL645820) Human DNA sequence from clone RP1-138O17 on chrom... 36 0.10 2
(AL354655) Human DNA sequence *** SEQUENCING CANCELLED *** f... 36 0.10 2
(FE846078) CAFI539.rev CAFI Pichia stipitis aerobic dextrose... 38 0.11 2
(FE846079) CAFI539.fwd CAFI Pichia stipitis aerobic dextrose... 38 0.11 2
(AC176598) Strongylocentrotus purpuratus clone R3-3077O24, W... 50 0.17 1
(FH982592) CHO_OF6831xf07r1.ab1 CHO_OF6 Nicotiana tabacum ge... 50 0.17 1
(FH645795) CHO_OF4983xc19r1.ab1 CHO_OF4 Nicotiana tabacum ge... 50 0.17 1
(ET694320) CHO_OF339xa18r1.ab1 CHO_OF Nicotiana tabacum geno... 50 0.17 1
(CO372225) tah98h10.y1 HyEch JUMY T1 Hydractinia echinata cD... 50 0.17 1
(AJ508546) Platichthys flesus EST, clone pfcato23. 50 0.17 1
(AC210335) Populus trichocarpa clone POP024-E12, complete se... 46 0.32 3
(AC084577) Caenorhabditis briggsae cosmid G39O05, complete s... 46 0.39 2
(AC164154) Mus musculus chromosome 18, clone RP23-60G12, com... 48 0.65 1
(AC164106) Mus musculus BAC clone RP23-445D20 from chromosom... 48 0.65 1
(AP001314) Arabidopsis thaliana genomic DNA, chromosome 3, B... 48 0.65 1
(AC084463) Caenorhabditis briggsae cosmid CB037F21, complete... 48 0.65 1
(AL603914) Human DNA sequence from clone RP11-569A2 on chrom... 48 0.65 1
(AC110774) Homo sapiens BAC clone RP11-254A24 from 4, comple... 48 0.65 1
(AC135933) Rattus norvegicus clone CH230-304J22, *** SEQUENC... 48 0.65 1
(AC111556) Rattus norvegicus clone CH230-163G2, WORKING DRAF... 48 0.65 1
(AL606471) Human DNA sequence *** SEQUENCING CANCELLED *** f... 48 0.65 1
(AC198414) Zea mays chromosome UNKNOWN clone CH201-248J10; Z... 48 0.65 1
(AJ596012) Arabidopsis thaliana T-DNA flanking sequence, lef... 48 0.65 1
(DT768024) EST1201873 Aquilegia cDNA library Aquilegia formo... 48 0.65 1
(DR932462) EST1124001 Aquilegia cDNA library Aquilegia formo... 48 0.65 1
(DR927105) EST1118644 Aquilegia cDNA library Aquilegia formo... 48 0.65 1
(FG379614) CBHG1935.fwd CBHG Trichoderma virens strain Gv29-... 48 0.65 1
(FG379613) CBHG1935.rev CBHG Trichoderma virens strain Gv29-... 48 0.65 1
(AC103293) Rattus norvegicus clone CH230-67J14, *** SEQUENCI... 38 1.2 3
(BH473033) BOGVY18TR BOGV Brassica oleracea genomic clone BO... 42 2.0 2
(EJ009867) 1095403625470 Global-Ocean-Sampling_GS-26-01-01-1... 38 2.3 2
(AC102923) Mus musculus chromosome 1, clone RP24-262J2, comp... 46 2.6 1
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1... 46 2.6 1
(AC178933) Strongylocentrotus purpuratus clone R3-3115M23, W... 46 2.6 1
(AC178181) Strongylocentrotus purpuratus clone R3-3082C2, WO... 46 2.6 1
(AC175845) Strongylocentrotus purpuratus clone R3-15L20, WOR... 46 2.6 1
(EJ285442) 1095368018918 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.6 1
(EJ248699) 1095344005045 Global-Ocean-Sampling_GS-27-01-01-1... 46 2.6 1
(EI107952) ChBa_A_024D11.x01 Chesapeake Bay viral metagenome... 46 2.6 1
(AL199414) Tetraodon nigroviridis genome survey sequence T7 ... 46 2.6 1
(DE563481) Bombyx mori genomic DNA, Fosmid clone:GBMFno205_h... 46 2.6 1
(DE352499) Bombyx mori genomic DNA, BAC clone:BET_070_I23. 46 2.6 1
(CC234827) CH261-7N19_RM1.2 CH261 Gallus gallus genomic clon... 46 2.6 1
(DW061287) CLLY13746.b1_D06.ab1 CLL(XYZ) lettuce saligna Lac... 46 2.6 1
(DR915286) EST1106825 Aquilegia cDNA library Aquilegia formo... 46 2.6 1
(DN910276) Cuc4_4_B11 Cucumber fruit development cDNA librar... 46 2.6 1

>(C92081) Dictyostelium discoideum slug cDNA, clone SSD370.
Length = 559

Score = 777 bits (392), Expect(2) = 0.0
Identities = 392/392 (100%)
Strand = Plus / Plus


Query: 433 gtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgatttaaagttagg 492
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 gtcttcaggtattgctttagctccaaactgcgtttcaaccttcaacgatttaaagttagg 83


Query: 493 tcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaatcattgttga 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 84 tcgtaaatatggtggtatcatctacagaatctctgacgattcaaaagaaatcattgttga 143


Query: 553 ctccaccttaccagctggttgttcattcgatgaattcaccaaatgtctcccagaaaacga 612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 144 ctccaccttaccagctggttgttcattcgatgaattcaccaaatgtctcccagaaaacga 203


Query: 613 atgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaagagcaaaat 672
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 atgtagatacgttgtcctcgactatcaatacaaagaagaaggtgcccaaaagagcaaaat 263


Query: 673 ctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgatggccacctc 732
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 ctgttttgttgcctggtgcccagataccgccaacattaaaaagaaaatgatggccacctc 323


Query: 733 atcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatccaaggtaccga 792
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 atcaaaagactctttacgtaaagcctgtgttggtatccaagttgaaatccaaggtaccga 383


Query: 793 tgcctctgaagtcaaagattcatgtttctatg 824
||||||||||||||||||||||||||||||||
Sbjct: 384 tgcctctgaagtcaaagattcatgtttctatg 415

Score = 163 bits (82), Expect(2) = 0.0
Identities = 82/82 (100%)
Strand = Plus / Plus


Query: 884 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 943
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 ctcccgaggaacgaattcaatatttataaatagtaataaatctcctcatacatataattt 534


Query: 944 aataaaataatctgtattttct 965
||||||||||||||||||||||
Sbjct: 535 aataaaataatctgtattttct 556

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 935,617,047
Number of extensions: 58063193
Number of successful extensions: 4956018
Number of sequences better than 10.0: 136
Length of query: 1015
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 991
Effective length of database: 97,308,875,965
Effective search space: 96433096081315
Effective search space used: 96433096081315
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14349-1 (Contig-U14349-1Q) /CSM_Contig/Contig-U14349-1Q.Seq.d
(1015 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

(P54706) RecName: Full=Cofilin-1; &D37980_1(D37980|pid:none) &D... 278 2e-73
(P37167) RecName: Full=Actophorin; &M93361_1(M93361|pid:none) 130 7e-29
FM992692_38(FM992692|pid:none) Candida dubliniensis CD36 chromos... 125 2e-27
(Q96VU9) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 125 3e-27
AY428595_1(AY428595|pid:none) Helianthus annuus clone HA10-7 put... 123 9e-27
CP000501_299(CP000501|pid:none) Pichia stipitis CBS 6054 chromos... 120 1e-25
(Q9HF97) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 119 2e-25
(Q6CQ22) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 119 2e-25
CU928179_306(CU928179|pid:none) Zygosaccharomyces rouxii strain ... 116 1e-24
(Q6C0Y0) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 116 1e-24
(Q03048) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 116 1e-24
EU961226_1(EU961226|pid:none) Zea mays clone 233661 actin-depoly... 116 1e-24
BT087663_1(BT087663|pid:none) Zea mays full-length cDNA clone ZM... 116 1e-24
AY635996_1(AY635996|pid:none) Monacrosporium haptotylum cofilin-... 115 2e-24
PDBN(1CNU)A MOL_ID: 1;MOL_ID: 1; MOLECULE: ACTOPHORIN; MOLECULE:... 115 2e-24
(Q6EUH7) RecName: Full=Actin-depolymerizing factor 1; AltName: F... 115 2e-24
FN392319_800(FN392319|pid:none) Pichia pastoris GS115 chromosome... 112 2e-23
BT051394_1(BT051394|pid:none) Medicago truncatula clone MTYF1_F2... 112 2e-23
AY542311_16(AY542311|pid:none) Sorghum bicolor clone SB20O07 b1-... 112 2e-23
(Q0DLA3) RecName: Full=Actin-depolymerizing factor 7; AltName: F... 112 2e-23
AP008211_84(AP008211|pid:none) Oryza sativa (japonica cultivar-g... 112 2e-23
Z47973_21(Z47973|pid:none) S.cerevisiae chromosome XII DNA inclu... 112 2e-23
EU959051_1(EU959051|pid:none) Zea mays clone 209774 hypothetical... 111 4e-23
EF086964_1(EF086964|pid:none) Picea sitchensis clone WS0274_B05 ... 111 4e-23
DQ320313_1(DQ320313|pid:none) Arachis hypogaea actin depolymeriz... 111 4e-23
BT070615_1(BT070615|pid:none) Picea sitchensis clone WS0273_D09 ... 111 5e-23
EF148078_1(EF148078|pid:none) Populus trichocarpa clone WS0127_F... 110 8e-23
EF144327_1(EF144327|pid:none) Populus trichocarpa clone PX0015_K... 110 8e-23
AC141106_8(AC141106|pid:none) Medicago truncatula clone mth2-33e... 110 8e-23
(Q39250) RecName: Full=Actin-depolymerizing factor 1; S... 110 1e-22
EF084655_1(EF084655|pid:none) Picea sitchensis clone WS02722_D11... 110 1e-22
EU526017_1(EU526017|pid:none) Solanum chacoense actin-depolymeri... 110 1e-22
(P78929) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 110 1e-22
EU959369_1(EU959369|pid:none) Zea mays clone 217737 actin-depoly... 109 2e-22
DQ402083_1(DQ402083|pid:none) Gossypium hirsutum actin depolymer... 108 2e-22
(Q2QLT8) RecName: Full=Actin-depolymerizing factor 11; AltName: ... 108 2e-22
(Q9FVI1) RecName: Full=Actin-depolymerizing factor 2; S... 108 3e-22
(Q9LQ81) RecName: Full=Actin-depolymerizing factor 10; ... 108 3e-22
EU284842_1(EU284842|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 107 5e-22
AC135102_23(AC135102|pid:none) Medicago truncatula clone mth2-8m... 107 5e-22
DQ402077_1(DQ402077|pid:none) Gossypium hirsutum actin depolymer... 107 5e-22
(Q5KJM6) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 107 5e-22
DQ402080_1(DQ402080|pid:none) Gossypium hirsutum actin depolymer... 107 5e-22
AM293606_1(AM293606|pid:none) Platanus x acerifolia mRNA for act... 107 5e-22
CU928180_669(CU928180|pid:none) Kluyveromyces thermotolerans str... 107 9e-22
DQ088156_1(DQ088156|pid:none) Gossypium hirsutum actin depolymer... 107 9e-22
BT040478_1(BT040478|pid:none) Zea mays full-length cDNA clone ZM... 106 1e-21
EU165514_1(EU165514|pid:none) Gossypium barbadense actin-depolym... 106 1e-21
(Q67ZM4) RecName: Full=Actin-depolymerizing factor 7; S... 106 1e-21
BT051434_1(BT051434|pid:none) Medicago truncatula clone MTYF1_F2... 106 1e-21
EF145309_1(EF145309|pid:none) Populus trichocarpa clone WS01123_... 105 2e-21
(Q43694) RecName: Full=Actin-depolymerizing factor 2; AltName: F... 105 2e-21
DQ517332_1(DQ517332|pid:none) Nicotiana benthamiana actin depoly... 105 3e-21
AY084837_1(AY084837|pid:none) Arabidopsis thaliana clone 119129 ... 104 4e-21
(Q9AY76) RecName: Full=Actin-depolymerizing factor 2; AltName: F... 104 4e-21
(P46251) RecName: Full=Actin-depolymerizing factor 1; AltName: F... 104 6e-21
BT084446_1(BT084446|pid:none) Zea mays full-length cDNA clone ZM... 104 6e-21
AF102822_1(AF102822|pid:none) Arabidopsis thaliana actin depolym... 103 7e-21
BT040200_1(BT040200|pid:none) Zea mays full-length cDNA clone ZM... 103 7e-21
EU965162_1(EU965162|pid:none) Zea mays clone 284165 actin-depoly... 103 7e-21
CU638744_207(CU638744|pid:none) Podospora anserina genomic DNA c... 103 7e-21
AM111332_1(AM111332|pid:none) Plantago major mRNA for actin-depo... 103 1e-20
CR954204_31(CR954204|pid:none) Ostreococcus tauri strain OTTH059... 103 1e-20
AM111328_1(AM111328|pid:none) Plantago major mRNA for actin-depo... 103 1e-20
(Q39251) RecName: Full=Actin-depolymerizing factor 2; S... 103 1e-20
AF236068_1(AF236068|pid:none) Elaeis guineensis clone FS1 actin ... 102 2e-20
AY050460_1(AY050460|pid:none) Arabidopsis thaliana AT5g59890/mmn... 102 2e-20
U58278_1(U58278|pid:none) Triticum aestivum actin-binding protei... 102 2e-20
AP009325_19(AP009325|pid:none) Musa balbisiana genomic DNA, BAC ... 102 2e-20
(Q9ZSK4) RecName: Full=Actin-depolymerizing factor 3; S... 102 2e-20
AM920435_1274(AM920435|pid:none) Penicillium chrysogenum Wiscons... 102 3e-20
AL022197_4(AL022197|pid:none) Arabidopsis thaliana DNA chromosom... 102 3e-20
AF112887_1(AF112887|pid:none) Populus x canescens actin depolyme... 101 4e-20
AB019226_9(AB019226|pid:none) Arabidopsis thaliana genomic DNA, ... 100 8e-20
AY081941_1(AY081941|pid:none) Nicotiana tabacum pollen specific ... 100 1e-19
(Q84TB3) RecName: Full=Actin-depolymerizing factor 4; AltName: F... 100 1e-19
(Q8H2P8) RecName: Full=Actin-depolymerizing factor 9; AltName: F... 100 1e-19
AB167476_1(AB167476|pid:none) Chlamydomonas reinhardtii NSG11 mR... 99 2e-19
DQ402081_1(DQ402081|pid:none) Gossypium hirsutum actin depolymer... 99 2e-19
S71361(S71361)actin-binding protein WCOR719 - wheat 99 3e-19
AY086510_1(AY086510|pid:none) Arabidopsis thaliana clone 255294 ... 98 5e-19
EU878778_4(EU878778|pid:none) Hordeum vulgare subsp. vulgare Adf... 98 5e-19
EU960304_1(EU960304|pid:none) Zea mays clone 223386 actin-depoly... 98 5e-19
(P45594) RecName: Full=Cofilin/actin-depolymerizing factor homol... 98 5e-19
CP000584_22(CP000584|pid:none) Ostreococcus lucimarinus CCE9901 ... 97 1e-18
(Q966T6) RecName: Full=Cofilin-2; &AB055926_1(AB055926|pid:none... 94 6e-18
DQ440489_1(DQ440489|pid:none) Aedes aegypti clone AET-8120 actin... 94 1e-17
EF147492_1(EF147492|pid:none) Populus trichocarpa clone WS01231_... 93 1e-17
EU878778_1(EU878778|pid:none) Hordeum vulgare subsp. vulgare Adf... 93 1e-17
(O49606) RecName: Full=Actin-depolymerizing factor 9; S... 92 2e-17
EF547824_1(EF547824|pid:none) Artemia franciscana actin-depolyme... 91 5e-17
B84543(B84543)actin depolymerizing factor 5 [imported] - Arabido... 91 6e-17
AY232186_1(AY232186|pid:none) Drosophila yakuba clone yak-ad_tsr... 91 8e-17
EU082031_1(EU082031|pid:none) Porphyra yezoensis actin depolymer... 91 8e-17
(Q4I963) RecName: Full=Cofilin; AltName: Full=Actin-depolymerizi... 89 2e-16
AY737528_1(AY737528|pid:none) Toxoptera citricida putative cofil... 89 2e-16
DQ160088_1(DQ160088|pid:none) Taraxacum officinale TO68-2 (To68-... 89 3e-16
AC116960_31(AC116960|pid:none) Dictyostelium discoideum chromoso... 88 5e-16
EU971600_1(EU971600|pid:none) Zea mays clone 367792 actin-depoly... 87 7e-16
(P45593) RecName: Full=Cofilin-1-B; &BC043803_1(BC043803|pid:no... 87 9e-16
(P23528) RecName: Full=Cofilin-1; AltName: Full=Cofilin, non-mus... 87 1e-15
EF585755_1(EF585755|pid:none) Sonneratia ovata isolate Sonn82A_3... 87 1e-15
AY891526_1(AY891526|pid:none) Synthetic construct Homo sapiens c... 87 1e-15
(P18760) RecName: Full=Cofilin-1; AltName: Full=Cofilin, non-mus... 86 2e-15
BT088078_1(BT088078|pid:none) Zea mays full-length cDNA clone ZM... 86 2e-15
(Q9LZT3) RecName: Full=Putative actin-depolymerizing factor 11; ... 86 2e-15
EF585753_1(EF585753|pid:none) Sonneratia alba isolate Sonn82A_1 ... 86 2e-15
BT076439_1(BT076439|pid:none) Caligus rogercresseyi clone crog-e... 86 2e-15
AL355930_27(AL355930|pid:none) Neurospora crassa DNA linkage gro... 86 2e-15
BT076201_1(BT076201|pid:none) Caligus rogercresseyi clone crog-e... 86 2e-15
(P10668) RecName: Full=Cofilin-1; AltName: Full=Cofilin, non-mus... 86 2e-15
EF585754_1(EF585754|pid:none) Sonneratia caseolaris isolate Sonn... 86 2e-15
EU953093_1(EU953093|pid:none) Zea mays clone 1382136 actin-depol... 82 2e-14
EU972453_1(EU972453|pid:none) Zea mays clone 381507 actin-depoly... 82 2e-14
B35703(B35703) cofilin - chicken &M55659_1(M55659|pid:none) 80 9e-14
AY347804_1(AY347804|pid:none) Malus x domestica clone 17-6 actin... 80 9e-14
AY398324_1(AY398324|pid:none) Danio rerio clone RZ151A2B11 muscl... 80 1e-13
(P45591) RecName: Full=Cofilin-2; AltName: Full=Cofilin, muscle ... 79 2e-13
EU247208_1(EU247208|pid:none) Lycosa singoriensis clone LSsin172... 79 3e-13
BC065947_1(BC065947|pid:none) Danio rerio cofilin 2 (muscle), mR... 79 3e-13
T49327(T49327)cofilin related protein [imported] - Neurospora cr... 78 4e-13
(Q5XHH8) RecName: Full=Cofilin-2; &BC084079_1(BC084079|pid:none) 78 6e-13
BT043770_1(BT043770|pid:none) Salmo salar clone HM6_1206 cofilin... 77 1e-12
BT056497_1(BT056497|pid:none) Salmo salar clone ssal-sjb-006-155... 76 2e-12
BT075737_1(BT075737|pid:none) Osmerus mordax clone omor-eva-511-... 75 3e-12
DQ215798_1(DQ215798|pid:none) Taeniopygia guttata clone 0061P002... 74 6e-12
(P18359) RecName: Full=Destrin; AltName: Full=Actin-depolymerizi... 74 8e-12
BT047499_1(BT047499|pid:none) Salmo salar clone ssal-eve-515-083... 74 8e-12
BT048303_1(BT048303|pid:none) Salmo salar clone ssal-eve-537-236... 74 8e-12
AY626817_1(AY626817|pid:none) Gekko japonicus BS007P (BS007) mRN... 74 1e-11
BT074698_1(BT074698|pid:none) Osmerus mordax clone omor-rgc-501-... 74 1e-11
BT058513_1(BT058513|pid:none) Salmo salar clone Contig1508 Cofil... 73 1e-11
(P60981) RecName: Full=Destrin; AltName: Full=Actin-depolymerizi... 72 2e-11
BT056651_1(BT056651|pid:none) Salmo salar clone ssal-eve-542-284... 72 2e-11
BC103074_1(BC103074|pid:none) Bos taurus destrin (actin depolyme... 72 3e-11
AP007175_409(AP007175|pid:none) Aspergillus oryzae RIB40 genomic... 71 5e-11
(Q9R0P5) RecName: Full=Destrin; AltName: Full=Actin-depolymerizi... 71 5e-11
FN315144_1(FN315144|pid:none) Schistosoma japonicum isolate Anhu... 71 5e-11
EF195234_1(EF195234|pid:none) Eimeria tenella actin depolymerizi... 71 7e-11
AK315994_1(AK315994|pid:none) Homo sapiens cDNA, FLJ78893 comple... 70 1e-10
AK302338_1(AK302338|pid:none) Homo sapiens cDNA FLJ52030 complet... 70 1e-10
U62146_1(U62146|pid:none) Toxoplasma gondii actin depolymerizing... 69 2e-10
AM494966_45(AM494966|pid:none) Leishmania braziliensis chromosom... 69 2e-10
AC093543_9(AC093543|pid:none) Trypanosoma brucei chromosome 3 cl... 69 3e-10
(Q7M0E3) RecName: Full=Destrin; AltName: Full=Actin-depolymerizi... 68 4e-10
AY129245_1(AY129245|pid:none) Populus x canescens putative actin... 68 6e-10
DQ094143_1(DQ094143|pid:none) Aplysia kurodai cofilin mRNA, comp... 67 8e-10
AM910993_93(AM910993|pid:none) Plasmodium knowlesi strain H chro... 67 8e-10
FN323089_1(FN323089|pid:none) Schistosoma japonicum isolate Anhu... 66 2e-09
BC045044_1(BC045044|pid:none) Xenopus laevis hypothetical protei... 66 2e-09
JE0223(JE0223)destrin - rat 65 3e-09
AM502247_66(AM502247|pid:none) Leishmania infantum chromosome 29. 62 3e-08
AL844509_598(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 62 3e-08
AL132765_3(AL132765|pid:none) Human DNA sequence from clone RP11... 62 4e-08
FN323076_1(FN323076|pid:none) Schistosoma japonicum isolate Anhu... 61 7e-08
EU974100_1(EU974100|pid:none) Zea mays clone 439715 actin-depoly... 60 9e-08
FN320267_1(FN320267|pid:none) Schistosoma japonicum isolate Anhu... 60 1e-07
BT055590_1(BT055590|pid:none) Zea mays full-length cDNA clone ZM... 59 2e-07
T33952(T33952)actin depolymerizing factor homolog unc-60 - Caeno... 59 3e-07
EF144266_1(EF144266|pid:none) Populus trichocarpa clone PX0015_B... 59 3e-07
EF553515_1(EF553515|pid:none) Haliotis diversicolor actin depoly... 59 4e-07
AY542984_1(AY542984|pid:none) Bigelowiella natans actin depolyme... 59 4e-07
(Q0D744) RecName: Full=Putative actin-depolymerizing factor 8; A... 58 5e-07
BT049164_1(BT049164|pid:none) Salmo salar clone ssal-evd-553-127... 58 6e-07
AM270289_22(AM270289|pid:none) Aspergillus niger contig An12c033... 57 1e-06
FN357683_5(FN357683|pid:none) Schistosoma mansoni genome sequenc... 57 1e-06
AY915076_1(AY915076|pid:none) Schistosoma japonicum SJCHGC02867 ... 56 2e-06
AM920436_1009(AM920436|pid:none) Penicillium chrysogenum Wiscons... 56 2e-06
DQ147992_1(DQ147992|pid:none) Macaca mulatta clone dl2_k02_t7_12... 55 4e-06
AY123143_1(AY123143|pid:none) Griffithsia japonica acin depolyme... 55 5e-06
AM920427_752(AM920427|pid:none) Penicillium chrysogenum Wisconsi... 54 7e-06
FN320268_1(FN320268|pid:none) Schistosoma japonicum isolate Anhu... 54 1e-05
FJ438484_1(FJ438484|pid:none) Epinephelus coioides destrin mRNA,... 53 2e-05
AL844504_34(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 51 7e-05
CR382138_672(CR382138|pid:none) Debaryomyces hansenii strain CBS... 49 4e-04
DQ000975_1(DQ000975|pid:none) Plasmodium berghei actin depolymer... 46 0.002
(Q86IX3) RecName: Full=Cofilin-5; &AC116986_91(AC116986|pid:none) 46 0.002
AB001732_1(AB001732|pid:none) Mus musculus Gmfb mRNA for glia ma... 45 0.003
(P60983) RecName: Full=Glia maturation factor beta; Sho... 45 0.003
(Q63228) RecName: Full=Glia maturation factor beta; Sho... 45 0.004
S22149(S22149)glia maturation factor beta - rat 45 0.004
FN320266_1(FN320266|pid:none) Schistosoma japonicum isolate Anhu... 45 0.005
AM910992_300(AM910992|pid:none) Plasmodium knowlesi strain H chr... 45 0.005
AY830125_1(AY830125|pid:none) Sus scrofa cofilin 2 mRNA, partial... 44 0.007
(Q91YR1) RecName: Full=Twinfilin-1; AltName: Full=Protein A6; &... 43 0.015
FM992693_57(FM992693|pid:none) Candida dubliniensis CD36 chromos... 43 0.015
BC015081_1(BC015081|pid:none) Mus musculus twinfilin, actin-bind... 43 0.015
AK303614_1(AK303614|pid:none) Homo sapiens cDNA FLJ51435 complet... 40 0.13
(Q9ERL7) RecName: Full=Glia maturation factor gamma; Sh... 39 0.29
BC068548_1(BC068548|pid:none) Homo sapiens twinfilin, actin-bind... 39 0.29
AK291223_1(AK291223|pid:none) Homo sapiens cDNA FLJ77129 complet... 39 0.29
(Q68F50) RecName: Full=Twinfilin-1; &BC079994_1(BC079994|pid:no... 39 0.29
AY893630_1(AY893630|pid:none) Synthetic construct Homo sapiens c... 39 0.29
BC043148_1(BC043148|pid:none) Homo sapiens twinfilin, actin-bind... 39 0.29
FN392320_986(FN392320|pid:none) Pichia pastoris GS115 chromosome... 39 0.29
AB384914_1(AB384914|pid:none) Synthetic construct DNA, clone: pF... 39 0.29
(Q56JV6) RecName: Full=Twinfilin-1; &AY911376_1(AY911376|pid:no... 39 0.38
BC084826_1(BC084826|pid:none) Xenopus laevis hypothetical LOC495... 38 0.49
AX885549_1(AX885549|pid:none) Sequence 1412 from Patent EP1033401. 38 0.64
AY894044_1(AY894044|pid:none) Synthetic construct Homo sapiens c... 38 0.64
AK152486_1(AK152486|pid:none) Mus musculus bone marrow macrophag... 37 0.84
BC068858_1(BC068858|pid:none) Xenopus laevis hypothetical protei... 37 1.1
(Q80T18) RecName: Full=Glia maturation factor gamma; Sh... 37 1.1
AE016820_338(AE016820|pid:none) Ashbya gossypii (= Eremothecium ... 37 1.1
FN318992_1(FN318992|pid:none) Schistosoma japonicum isolate Anhu... 37 1.1
AM910994_638(AM910994|pid:none) Plasmodium knowlesi strain H chr... 37 1.1
BC078467_1(BC078467|pid:none) Xenopus laevis MGC85221 protein, m... 37 1.1
BC049318_1(BC049318|pid:none) Danio rerio glia maturation factor... 37 1.4
AC024801_11(AC024801|pid:none) Caenorhabditis elegans cosmid Y50... 37 1.4
FB746699_1(FB746699|pid:none) Sequence 166 from Patent EP1903111. 37 1.4
AB026999_1(AB026999|pid:none) Cyprinus carpio mRNA for glia matu... 37 1.4
PDBN(1MDV)A MOL_ID: 1;MOL_ID: 1; MOLECULE: CYTOCHROME C3; MOLECU... 37 1.4
(P00131) RecName: Full=Cytochrome c3; Flags: Precursor; &AE0172... 37 1.4
(Q5I082) RecName: Full=Twinfilin-1; &BC088597_1(BC088597|pid:no... 37 1.4
BC114332_1(BC114332|pid:none) Danio rerio zgc:136987, mRNA (cDNA... 37 1.4
AE017348_3(AE017348|pid:none) Cryptococcus neoformans var. neofo... 36 1.9
CP000499_452(CP000499|pid:none) Pichia stipitis CBS 6054 chromos... 36 1.9
(Q56JZ9) RecName: Full=Glia maturation factor gamma; Sh... 36 1.9
CU633897_271(CU633897|pid:none) Podospora anserina genomic DNA c... 36 2.4
AB168141_1(AB168141|pid:none) Macaca fascicularis testis cDNA cl... 35 3.2
FN392321_855(FN392321|pid:none) Pichia pastoris GS115 chromosome... 35 3.2
BT047181_1(BT047181|pid:none) Salmo salar clone ssal-evf-547-369... 35 4.2
CR382131_1445(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 35 5.4
BT079613_1(BT079613|pid:none) Esox lucius clone eluc-evq-512-105... 35 5.4
X51780_1(X51780|pid:none) Yeast ABP1 gene for actin binding prot... 34 7.1
FM992689_609(FM992689|pid:none) Candida dubliniensis CD36 chromo... 34 7.1
(P15891) RecName: Full=Actin-binding protein; &LLBY(S19503;S197... 34 7.1
CU928180_337(CU928180|pid:none) Kluyveromyces thermotolerans str... 34 7.1
FN314486_1(FN314486|pid:none) Schistosoma japonicum isolate Anhu... 34 9.3
AE016815_317(AE016815|pid:none) Ashbya gossypii (= Eremothecium ... 34 9.3
AY814885_1(AY814885|pid:none) Schistosoma japonicum SJCHGC06072 ... 34 9.3

>(P54706) RecName: Full=Cofilin-1; &D37980_1(D37980|pid:none)
&D37981_1(D37981|pid:none)
Length = 137

Score = 278 bits (712), Expect = 2e-73
Identities = 134/134 (100%), Positives = 134/134 (100%)
Frame = +2

Query: 434 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENE 613
SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENE
Sbjct: 2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENE 61

Query: 614 CRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTD 793
CRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTD
Sbjct: 62 CRYVVLDYQYKEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTD 121

Query: 794 ASEVKDSCFYEKCT 835
ASEVKDSCFYEKCT
Sbjct: 122 ASEVKDSCFYEKCT 135

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,169,944,546
Number of extensions: 19466791
Number of successful extensions: 41812
Number of sequences better than 10.0: 231
Number of HSP's gapped: 41633
Number of HSP's successfully gapped: 232
Length of query: 338
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 209
Effective length of database: 633,664,753
Effective search space: 132435933377
Effective search space used: 132435933377
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.87 gvh: 0.46 alm: 0.50 top: 0.67 tms: 0.00 mit: 0.25 mip: 0.06
nuc: 0.00 erl: 0.00 erm: 0.40 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

40.0 %: nuclear
36.0 %: cytoplasmic
8.0 %: mitochondrial
8.0 %: vacuolar
4.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U14349-1 is nuc

VS (DIR, S) 14
VH (FL, L) 0
VF (FL, S) 4
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 2
SS (DIR, S) 4
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 3
FC-IC (SUB) 3