| Contig-U02594-1 |
| Contig ID |
Contig-U02594-1 |
| Contig update |
2002. 9.13 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
482 |
| Chromosome number (1..6, M) |
5 |
| Chromosome length |
5062330 |
| Start point |
771191 |
| End point |
770708 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
3 |
| Number of EST |
4 |
| Link to clone list |
U02594 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6. 9 |
| Homology vs CSM-cDNA |
|
| dna update |
2009. 5.19 |
| Homology vs DNA |
Query= Contig-U02594-1 (Contig-U02594-1Q) /CSM_Contig/Contig-U02594-1Q.Seq.d
(482 letters)
Database: ddbj_A
102,105,510 sequences; 101,790,757,118 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ323368) Dictyostelium discoideum cDNA clone:dda10c09, 5' ... 714 0.0 2
(BJ339755) Dictyostelium discoideum cDNA clone:dda10c09, 3' ... 692 0.0 2
(AU263245) Dictyostelium discoideum vegetative cDNA clone:VS... 670 0.0 2
(AU263236) Dictyostelium discoideum vegetative cDNA clone:VS... 670 0.0 2
(CU469464) Candidatus Phytoplasma mali strain AT complete ch... 34 0.015 11
(DL172026) Methods for Identifying the Target of a Compound ... 42 0.049 2
(DJ377761) Identification of Essential Genes in Prokaryotes. 42 0.049 2
(DD121591) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 42 0.072 2
(CS711955) Sequence 4495 from Patent EP1829892. 42 0.072 2
(AX621532) Sequence 4495 from Patent WO02094868. 42 0.072 2
(DD089057) A method for identification, isolation and produc... 42 0.078 2
(CS274491) Sequence 439 from Patent EP1630172. 42 0.078 2
(CS253154) Sequence 439 from Patent EP1616876. 42 0.078 2
(AX584062) Sequence 439 from Patent WO02059148. 42 0.078 2
(AC166960) Bos taurus clone CH240-187C10, WORKING DRAFT SEQU... 50 0.078 1
(AC168756) Strongylocentrotus purpuratus clone R3-3004K16, W... 40 0.095 4
(AL935290) Zebrafish DNA sequence from clone CH211-270H11. 38 0.19 5
(BX883656) AGENAE Rainbow trout multi-tissues-normalized + 2... 48 0.31 1
(GE840431) EST_omyk_evo_833987 omykevo WBC Oncorhynchus myki... 48 0.31 1
(CP001080) Sulfurihydrogenibium sp. YO3AOP1, complete genome. 48 0.31 1
(CR376826) Zebrafish DNA sequence from clone DKEYP-78F1 in l... 46 0.61 4
(AC147015) Zea mays clone ZMMBBc0040A01, *** SEQUENCING IN P... 34 0.72 5
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734... 34 0.79 12
(AJ132191) Staphylococcus aureus prfA and pbp2 genes ORF3, O... 46 0.96 2
(AC024934) Homo sapiens 12 BAC RP11-329A19 (Roswell Park Can... 44 1.1 3
(AC146253) Pan troglodytes BAC clone CH251-118B18 from Y, co... 40 1.2 2
(DD122136) STAPHYLOCOCCUS AUREUS PROTEINS AND NUCLEIC ACIDS. 46 1.2 1
(CS713045) Sequence 5585 from Patent EP1829892. 46 1.2 1
(AX622622) Sequence 5585 from Patent WO02094868. 46 1.2 1
(AR536602) Sequence 1164 from patent US 6737248. 46 1.2 1
(AR355046) Sequence 1164 from patent US 6593114. 46 1.2 1
(AQ561935) HS_5239_A1_A05_SP6E RPCI-11 Human Male BAC Librar... 46 1.2 1
(CP000736) Staphylococcus aureus subsp. aureus JH1, complete... 46 1.2 1
(CP000730) Staphylococcus aureus subsp. aureus USA300_TCH151... 46 1.2 1
(CP000703) Staphylococcus aureus subsp. aureus JH9, complete... 46 1.2 1
(CP000255) Staphylococcus aureus subsp. aureus USA300_FPR375... 46 1.2 1
(CP000253) Staphylococcus aureus subsp. aureus NCTC 8325, co... 46 1.2 1
(CP000046) Staphylococcus aureus subsp. aureus COL, complete... 46 1.2 1
(BX571857) Staphylococcus aureus strain MSSA476, complete ge... 46 1.2 1
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25... 46 1.2 1
(BA000033) Staphylococcus aureus subsp. aureus MW2 DNA, comp... 46 1.2 1
(BA000018) Staphylococcus aureus subsp. aureus N315 DNA, com... 46 1.2 1
(BA000017) Staphylococcus aureus subsp. aureus Mu50 DNA, com... 46 1.2 1
(AP009351) Staphylococcus aureus subsp. aureus str. Newman D... 46 1.2 1
(AP009324) Staphylococcus aureus subsp. aureus Mu3 DNA, comp... 46 1.2 1
(AJ938182) Staphylococcus aureus RF122 complete genome. 46 1.2 1
(AB113403) Staphylococcus aureus dnaD gene for primosomal pr... 46 1.2 1
(AE014821) Plasmodium falciparum 3D7 chromosome 14 section 6... 30 1.4 10
(AM656168) Entamoeba moshkovskii FIC GSS, clone mosh036h06.q1k. 40 1.6 2
(AG729417) Macaca fuscata fuscata DNA, clone: MSB2-184G16_F,... 38 1.8 2
(BB032985) Mus musculus adult male thymus cDNA, RIKEN full-l... 38 2.9 2
(AC131091) Homo sapiens chromosome UNK clone CTD-2021H7, WOR... 38 3.0 2
(CT464387) Sus scrofa genomic clone CH242-429O18, genomic su... 32 3.2 2
(CU896607) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 3.4 4
(CR352215) Zebrafish DNA sequence from clone CH211-235F1 in ... 36 3.5 5
(AC181364) Strongylocentrotus purpuratus clone R3-113H02, WO... 36 3.8 6
(AR535497) Sequence 59 from patent US 6737248. 42 3.9 2
(AR353941) Sequence 59 from patent US 6593114. 42 3.9 2
(AL844507) Plasmodium falciparum chromosome 8. 36 3.9 11
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067... 32 3.9 10
(BX097045) RZPD Homo sapiens cDNA clone IMAGp998G174899 = IM... 38 3.9 2
(AC108736) Homo sapiens chromosome 3 clone RP11-464H2, *** S... 34 4.3 6
(CU104720) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 38 4.4 3
(AC003680) Arabidopsis thaliana chromosome 2 BAC F17K2 genom... 44 4.8 1
(AC162577) Bos taurus clone CH240-119O8, WORKING DRAFT SEQUE... 44 4.8 1
(AC160673) Bos taurus clone CH240-96B8, WORKING DRAFT SEQUEN... 44 4.8 1
(AC115329) Rattus norvegicus clone CH230-72E17, *** SEQUENCI... 44 4.8 1
(AC027442) Homo sapiens clone RP11-439K16, WORKING DRAFT SEQ... 44 4.8 1
(AC230142) Bos taurus clone CH240-519K21, WORKING DRAFT SEQU... 44 4.8 1
(AC230122) Bos taurus clone CH240-519P23, WORKING DRAFT SEQU... 44 4.8 1
(AC181493) Strongylocentrotus purpuratus clone R3-52I04, WOR... 44 4.8 1
(AC172969) Bos taurus clone CH240-280M17, WORKING DRAFT SEQU... 44 4.8 1
(AC163169) Bos taurus clone CH240-135M24, *** SEQUENCING IN ... 44 4.8 1
(ER808680) POTLW42TF Solanum tuberosum RHPOTKEY BAC ends Sol... 44 4.8 1
(EK513549) 1095515489488 Global-Ocean-Sampling_GS-32-01-01-1... 44 4.8 1
(EK494780) 1095505152721 Global-Ocean-Sampling_GS-32-01-01-1... 44 4.8 1
(EI352898) GM_WBc0102G22.f GM_WBc Glycine max genomic clone ... 44 4.8 1
(DH626900) Rattus norvegicus DNA, BAC clone: RNB1-161L12, 3'... 44 4.8 1
(CR103949) Forward strand read from insert in 3'HPRT inserti... 44 4.8 1
(CL114512) ISB1-60F9_Sp6.1 ISB1 Xenopus (Silurana) tropicali... 44 4.8 1
(BB254660) Mus musculus 7 days neonate cerebellum cDNA, RIKE... 44 4.8 1
(AW555025) L0249A07-3 NIA Mouse Newborn Ovary cDNA Library M... 44 4.8 1
(ES835633) UFL_011_19 Cotton fiber 0-10 day post anthesis Go... 44 4.8 1
(CP001322) Desulfatibacillum alkenivorans AK-01, complete ge... 44 4.8 1
(AY258503) Escherichia coli strain EH41 plasmid pO113, compl... 44 4.8 1
(AF399919) Escherichia coli 0113:H21 large virulence plasmid... 44 4.8 1
(CU570853) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 36 4.8 6
(AC023347) Homo sapiens BAC clone RP11-507H23 from 2, comple... 38 4.9 2
(AC179337) Strongylocentrotus purpuratus clone R3-57L15, WOR... 42 4.9 3
(AL954673) Zebrafish DNA sequence from clone BUSM1-122B7 in ... 36 4.9 5
(AC182361) Spermophilus tridecemlineatus clone VMRC20-433G18... 42 5.1 4
(AC163697) Gallus gallus BAC clone CH261-186A14 from chromos... 34 5.2 6
(AC111241) Rattus norvegicus clone CH230-232I8, WORKING DRAF... 38 5.7 2
(CG839924) Ynhw0538 HW-YUBAC Bos taurus genomic clone HW-YUB... 40 5.9 2
(AE017263) Mesoplasma florum L1 complete genome. 34 5.9 11
(AL603789) Human DNA sequence from clone RP11-415G4 on chrom... 34 5.9 3
(CT956101) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 6.7 6
(AC210643) Macaca mulatta BAC CH250-453G15 (Children's Hosp... 40 7.0 4
(CT340125) Sus scrofa genomic clone CH242-371B5, genomic sur... 34 7.2 2
(DY893547) CeleSEQ12918 Cunninghamella elegans pBluescript (... 36 7.3 2
(FB571360) Sequence 227 from Patent EP1865317. 36 7.3 5
(FB571304) Sequence 171 from Patent EP1865317. 36 7.3 5
(CP000776) Campylobacter hominis ATCC BAA-381, complete genome. 32 7.4 2
(BX928758) Zebrafish DNA sequence from clone DKEY-206M15 in ... 38 7.5 5
(CT059881) Sus scrofa genomic clone PigE-58M17, genomic surv... 36 7.8 2
(CX668313) UCRCP01_036_H06_T7 Swingle citrumelo nematode-cha... 38 8.0 2
(AE014830) Plasmodium falciparum 3D7 chromosome 10 section 2... 32 8.1 8
(AC119506) Rattus norvegicus clone CH230-56A18, WORKING DRAF... 32 8.6 2
(AC099504) Homo sapiens chromosome 5 clone RP11-219L6, compl... 38 8.7 3
(AC112842) Rattus norvegicus clone CH230-355I4, *** SEQUENCI... 32 8.8 2
(CT025876) Zebrafish DNA sequence from clone DKEYP-118A9 in ... 32 8.9 2
(AC181173) Strongylocentrotus purpuratus clone R3-15G08, WOR... 38 9.0 4
(DL482052) Immunogenic Composition. 36 9.6 2
(DL464370) Immunogenci composition. 36 9.6 2
(CS561402) Sequence 46 from Patent WO2006032472. 36 9.6 2
(CS544112) Sequence 46 from Patent WO2006032475. 36 9.6 2
(CS536760) Sequence 46 from Patent WO2006032500. 36 9.6 2
(GM863198) Sequence 46 from Patent WO2007113222. 36 9.6 2
(GM675407) Sequence 56 from Patent WO2008081014. 36 9.6 2
(GM618526) Sequence 46 from Patent WO2007113223. 36 9.6 2
(AC215607) Zea mays chromosome 5 clone CH201-91K9; ZMMBBc009... 40 9.7 3
(DJ386655) Diagnosis of Diseases Associated with Metastasis. 40 9.9 3
(BD452712) Diagnosis of Diseases Associated with tumor suppr... 40 9.9 3
(AX281451) Sequence 115 from Patent WO0177376. 40 9.9 3
(AX251191) Sequence 159 from Patent WO0168912. 40 9.9 3
(AC018715) Homo sapiens chromosome 11 clone RP11-425G13, WOR... 36 10.0 4
>(BJ323368) Dictyostelium discoideum cDNA clone:dda10c09, 5' end,
single read.
Length = 473
Score = 714 bits (360), Expect(2) = 0.0
Identities = 360/360 (100%)
Strand = Plus / Plus
Query: 50 ccaacaatataatatataatggaaattttagataaacaagcattttttgaaacacgtgaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 ccaacaatataatatataatggaaattttagataaacaagcattttttgaaacacgtgaa 109
Query: 110 aaactatatacattaagtagaagtttaaatataatcaaacaacgtattcaaattgcagaa 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 aaactatatacattaagtagaagtttaaatataatcaaacaacgtattcaaattgcagaa 169
Query: 170 aatgatagaaagaaatgtttaattacaatcaatgaattagaatcattatcatcagaaact 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 aatgatagaaagaaatgtttaattacaatcaatgaattagaatcattatcatcagaaact 229
Query: 230 aaaacctataaagcagttggtaaaatgtttgttatctcaccaatgacctctttaaaaact 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 aaaacctataaagcagttggtaaaatgtttgttatctcaccaatgacctctttaaaaact 289
Query: 290 gaattaaaacaacaagttcaaaaagatgaagaagatgttaaaggtttaattaatcaaagt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 gaattaaaacaacaagttcaaaaagatgaagaagatgttaaaggtttaattaatcaaagt 349
Query: 350 aaatatattgatgcacaaattacagatacagaaagaagtttaaatgaattagttagaaag 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 aaatatattgatgcacaaattacagatacagaaagaagtttaaatgaattagttagaaag 409
Score = 54.0 bits (27), Expect(2) = 0.0
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 attgggatattaaaatttgttttcatc 27
|||||||||||||||||||||||||||
Sbjct: 1 attgggatattaaaatttgttttcatc 27
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 641,577,261
Number of extensions: 41805200
Number of successful extensions: 3779151
Number of sequences better than 10.0: 129
Length of query: 482
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 459
Effective length of database: 99,442,330,388
Effective search space: 45644029648092
Effective search space used: 45644029648092
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
|
| protein update |
2009. 7.19 |
| Homology vs Protein |
Query= Contig-U02594-1 (Contig-U02594-1Q) /CSM_Contig/Contig-U02594-1Q.Seq.d
(482 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY048212_1(AY048212|pid:none) Arabidopsis thaliana At2g07350/T13... 77 2e-13
BT053363_1(BT053363|pid:none) Medicago truncatula clone MTYFP_FQ... 70 2e-11
EF145022_1(EF145022|pid:none) Populus trichocarpa clone WS0111_J... 68 9e-11
AK243223_1(AK243223|pid:none) Oryza sativa Japonica Group cDNA, ... 67 3e-10
EU960050_1(EU960050|pid:none) Zea mays clone 221437 prefoldin su... 65 8e-10
BT053795_1(BT053795|pid:none) Zea mays full-length cDNA clone ZM... 65 8e-10
FB870159_1(FB870159|pid:none) Sequence 89432 from Patent WO20080... 63 4e-09
AP005514_7(AP005514|pid:none) Oryza sativa Japonica Group genomi... 62 9e-09
BT079288_1(BT079288|pid:none) Esox lucius clone eluc-evq-511-234... 56 4e-07
AE014134_1091(AE014134|pid:none) Drosophila melanogaster chromos... 56 4e-07
DQ215572_1(DQ215572|pid:none) Taeniopygia guttata clone 0061P001... 55 1e-06
AX888176_1(AX888176|pid:none) Sequence 4039 from Patent EP1033401. 54 2e-06
AY892916_1(AY892916|pid:none) Synthetic construct Homo sapiens c... 54 2e-06
(Q5RAM7) RecName: Full=Prefoldin subunit 1; &CR858988_1(CR85898... 54 2e-06
AK002575_1(AK002575|pid:none) Mus musculus adult male kidney cDN... 52 5e-06
AM269974_13(AM269974|pid:none) Aspergillus niger contig An01c027... 52 7e-06
BT073879_1(BT073879|pid:none) Oncorhynchus mykiss clone omyk-evo... 52 9e-06
(Q9CWM4) RecName: Full=Prefoldin subunit 1; &AK010532_1(AK01053... 51 2e-05
CU633899_452(CU633899|pid:none) Podospora anserina genomic DNA c... 50 3e-05
EU850438_8(EU850438|pid:none) Adineta vaga hypothetical protein ... 49 6e-05
(Q58394) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 49 6e-05
C64423(C64423) conserved hypothetical protein MJ0987 - Methanoco... 49 6e-05
AL389891_5(AL389891|pid:none) Neurospora crassa DNA linkage grou... 48 1e-04
EU975132_1(EU975132|pid:none) Zea mays clone 469809 unknown mRNA. 48 1e-04
BT081757_1(BT081757|pid:none) Rana catesbeiana clone rcat-evr-51... 47 3e-04
(Q61SU8) RecName: Full=Probable prefoldin subunit 1; 46 4e-04
CP000587_299(CP000587|pid:none) Ostreococcus lucimarinus CCE9901... 46 5e-04
(O14334) RecName: Full=Probable prefoldin subunit 1; &CU329671_... 45 7e-04
EU652317_7(EU652317|pid:none) Philodina roseola GTP binding prot... 45 9e-04
AY814540_1(AY814540|pid:none) Schistosoma japonicum SJCHGC04312 ... 44 0.002
AM989985_2(AM989985|pid:none) Zygosaccharomyces rouxii strain CB... 43 0.003
CR380953_318(CR380953|pid:none) Candida glabrata strain CBS138 c... 42 0.006
(Q9UYJ4) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 42 0.007
(O58268) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 42 0.007
(Q5JF85) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 42 0.009
(Q8U3S3) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 41 0.012
AP007150_377(AP007150|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.028
CP000123_803(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 40 0.028
(B6YTZ4) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 40 0.036
AP009510_255(AP009510|pid:none) Uncultured Termite group 1 bacte... 39 0.080
CP001357_1051(CP001357|pid:none) Brachyspira hyodysenteriae WA1,... 39 0.080
(A8MB97) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 39 0.080
BT081441_1(BT081441|pid:none) Rana catesbeiana clone rcat-evr-53... 38 0.10
AP004117_17(AP004117|pid:none) Oryza sativa Japonica Group genom... 38 0.14
AK028148_1(AK028148|pid:none) Mus musculus adult male tongue cDN... 37 0.18
(O29115) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 37 0.18
AB209996_1(AB209996|pid:none) Homo sapiens mRNA for CENPE varian... 37 0.23
S28261(S28261) centromere protein E - human &Z15005_1(Z15005|pi... 37 0.23
(A0B8V8) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 37 0.30
AF190642_1(AF190642|pid:none) Homo sapiens phosphoinositide-spec... 37 0.30
(A3MUN9) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 36 0.40
BT088156_1(BT088156|pid:none) Zea mays full-length cDNA clone ZM... 36 0.40
AB040949_1(AB040949|pid:none) Homo sapiens mRNA for KIAA1516 pro... 36 0.52
AF170071_1(AF170071|pid:none) Homo sapiens phospholipase C epsil... 36 0.52
AX275027_1(AX275027|pid:none) Sequence 1 from Patent WO0175121. 36 0.52
AF117948_1(AF117948|pid:none) Homo sapiens pancreas-enriched pho... 36 0.52
AK022543_1(AK022543|pid:none) Homo sapiens cDNA FLJ12481 fis, cl... 36 0.52
AL139118_1(AL139118|pid:none) Human DNA sequence from clone RP11... 36 0.52
AL139118_2(AL139118|pid:none) Human DNA sequence from clone RP11... 36 0.52
(Q9UHV3) RecName: Full=1-phosphatidylinositol-4,5-bisphosphate p... 36 0.52
AY995135_1(AY995135|pid:none) Homo sapiens phospholipase C epsil... 36 0.52
CP000575_528(CP000575|pid:none) Staphylothermus marinus F1, comp... 35 0.68
(B1Y973) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 35 1.2
AL929351_58(AL929351|pid:none) Plasmodium falciparum strain 3D7,... 35 1.2
AE000657_451(AE000657|pid:none) Aquifex aeolicus VF5, complete g... 35 1.2
AL844504_58(AL844504|pid:none) Plasmodium falciparum 3D7 chromos... 35 1.2
CP000559_1325(CP000559|pid:none) Methanocorpusculum labreanum Z,... 34 1.5
T30330(T30330) gelsolin-related protein GRP125 - slime mold (Dic... 34 1.5
T47237(T47237) myosin II heavy chain [imported] - Naegleria fowl... 34 1.5
AM910992_273(AM910992|pid:none) Plasmodium knowlesi strain H chr... 34 1.5
CP000095_252(CP000095|pid:none) Prochlorococcus marinus str. NAT... 34 2.0
(Q8CCH0) RecName: Full=Ubiquitin carboxyl-terminal hydrolase 34;... 34 2.0
BX293980_575(BX293980|pid:none) Mycoplasma mycoides subsp. mycoi... 34 2.0
AK148805_1(AK148805|pid:none) Mus musculus 2 days neonate sympat... 34 2.0
(Q0VBY1) RecName: Full=Outer dense fiber protein 2-like; &BC120... 33 2.6
BA000028_2414(BA000028|pid:none) Oceanobacillus iheyensis HTE831... 33 2.6
(A1RSS5) RecName: Full=Prefoldin subunit beta; AltName: Full=Gim... 33 2.6
EF070552_1(EF070552|pid:none) Maconellicoccus hirsutus clone WHM... 33 2.6
AF016676_1(AF016676|pid:none) Caenorhabditis elegans cosmid F41B... 33 2.6
AY259532_1(AY259532|pid:none) Mus musculus M-phase phosphoprotei... 33 3.4
CP000254_1051(CP000254|pid:none) Methanospirillum hungatei JF-1,... 33 3.4
CP001056_1516(CP001056|pid:none) Clostridium botulinum B str. Ek... 33 3.4
CP000123_496(CP000123|pid:none) Mycoplasma capricolum subsp. cap... 33 3.4
D84636(D84636)hypothetical protein At2g24420 [imported] - Arabid... 33 3.4
BC048954_1(BC048954|pid:none) Mus musculus kinesin family member... 33 3.4
BC124099_1(BC124099|pid:none) Danio rerio cDNA clone IMAGE:79257... 33 3.4
AF346717_3(AF346717|pid:none) Staphylococcus caprae strain N9003... 33 3.4
Z66490_1(Z66490|pid:none) S.trutta mRNA for slow myotomal muscle... 33 4.4
AY040821_1(AY040821|pid:none) Loligo pealei non-muscle myosin II... 33 4.4
AM910995_368(AM910995|pid:none) Plasmodium knowlesi strain H chr... 33 4.4
FM998773_1(FM998773|pid:none) Opisthacanthus cayaporum partial m... 33 4.4
AB016965_2(AB016965|pid:none) Bacillus licheniformis genes for b... 33 4.4
AY099521_1(AY099521|pid:none) Danio rerio structural maintenance... 32 5.7
AB083655_6(AB083655|pid:none) Bacillus cereus plasmid pBC-Tim DN... 32 5.7
CP000716_1063(CP000716|pid:none) Thermosipho melanesiensis BI429... 32 5.7
CP000553_273(CP000553|pid:none) Prochlorococcus marinus str. NAT... 32 5.7
AY073791_1(AY073791|pid:none) Mus musculus olfactory receptor MO... 32 5.7
EF191691_1(EF191691|pid:none) Taeniopygia guttata clone 0057P000... 32 5.7
CP000719_2(CP000719|pid:none) Yersinia pseudotuberculosis IP 317... 32 5.7
AB011142_1(AB011142|pid:none) Homo sapiens mRNA for KIAA0570 pro... 32 5.7
(Q27991) RecName: Full=Myosin-10; AltName: Full=Myosin heavy cha... 32 5.7
Y12229_1(Y12229|pid:none) M.musculus mRNA for utrophin. 32 5.7
AE017199_366(AE017199|pid:none) Nanoarchaeum equitans Kin4-M, co... 32 5.7
(Q54JA4) RecName: Full=Integrin beta-like protein D; Flags: Prec... 32 5.7
AJ586138_1(AJ586138|pid:none) Homo sapiens mRNA for ubiquitin-sp... 32 5.7
CP000040_48(CP000040|pid:none) Bacillus cereus E33L plasmid pE33... 32 5.7
T00338(T00338)hypothetical protein KIAA0570 - human 32 5.7
(P58773) RecName: Full=Tropomyosin alpha-1 chain; AltName: Full=... 32 7.5
A70399(A70399) conserved hypothetical protein aq_1151 - Aquifex ... 32 7.5
(Q5HRM9) RecName: Full=Putative ATP:guanido phosphotransferase S... 32 7.5
CR382126_51(CR382126|pid:none) Kluyveromyces lactis strain NRRL ... 32 7.5
CR628337_734(CR628337|pid:none) Legionella pneumophila str. Lens... 32 7.5
M69145_3(M69145|pid:none) Gallus gallus alpha-tropomyosin gene, ... 32 7.5
BX908798_399(BX908798|pid:none) Parachlamydia-related symbiont U... 32 7.5
AM494971_24(AM494971|pid:none) Leishmania braziliensis chromosom... 32 7.5
TMCHS2(S24400;A02983;PC2287) tropomyosin 2, gizzard gamma splice... 32 7.5
CP000728_1827(CP000728|pid:none) Clostridium botulinum F str. La... 32 7.5
M32441_1(M32441|pid:none) Chicken fast-twitch alpha-tropomyosin ... 32 7.5
BC168941_1(BC168941|pid:none) Rattus norvegicus sarcolemma assoc... 32 7.5
S05445(S05445) tropomyosin gamma, smooth muscle - Japanese quail... 32 7.5
M19156_1(M19156|pid:none) Human acidic keratin-10 mRNA, complete... 32 7.5
A28499(A28499;B26556) tropomyosin alpha chain, skin fibroblast -... 32 7.5
J00910_1(J00910|pid:none) chicken major alpha-tropomyosin mrna. 32 7.5
AF314920_1(AF314920|pid:none) Plasmodium yoelii yoelii p235 rhop... 32 7.5
M15044_1(M15044|pid:none) Japanese quail class 1 alpha-tropomyos... 32 7.5
S24403(S24403) alpha-tropomyosin - chicken &X57992_1(X57992|pid... 32 7.5
AP008208_847(AP008208|pid:none) Oryza sativa (japonica cultivar-... 32 9.8
AY166678_1(AY166678|pid:none) Plasmodium reichenowi reticulocyte... 32 9.8
AK092690_1(AK092690|pid:none) Homo sapiens cDNA FLJ35371 fis, cl... 32 9.8
A39816(A39816) tropomyosin 2, fibroblast - rat &A60597(A31380;A... 32 9.8
CR861051_1(CR861051|pid:none) Pongo abelii mRNA; cDNA DKFZp459F0... 32 9.8
AF533700_1(AF533700|pid:none) Plasmodium falciparum 3D7 normocyt... 32 9.8
(Q37382) RecName: Full=NADH-ubiquinone oxidoreductase chain 3; ... 32 9.8
A24199(S06210;A24199) tropomyosin NM, skeletal muscle - human &... 32 9.8
BC065425_1(BC065425|pid:none) Danio rerio zgc:77592, mRNA (cDNA ... 32 9.8
AL772193_2(AL772193|pid:none) Zebrafish DNA sequence from clone ... 32 9.8
(Q9D478) RecName: Full=Outer dense fiber protein 2-like; &AK016... 32 9.8
AF372217_1(AF372217|pid:none) Rattus norvegicus brain tropomyosi... 32 9.8
M18135_1(M18135|pid:none) Rat alpha-tropomyosin gene, exon 12. 32 9.8
AX405675_1(AX405675|pid:none) Sequence 90 from Patent WO0222660.... 32 9.8
AF411932_1(AF411932|pid:none) Plasmodium falciparum strain Malay... 32 9.8
B34787(B34787) tropomyosin 2 alpha, brain - rat &M34134_1(M3413... 32 9.8
CP001130_1165(CP001130|pid:none) Hydrogenobaculum sp. Y04AAS1, c... 32 9.8
AK056997_1(AK056997|pid:none) Homo sapiens cDNA FLJ32435 fis, cl... 32 9.8
AB170325_1(AB170325|pid:none) Macaca fascicularis brain cDNA clo... 32 9.8
CR940347_303(CR940347|pid:none) Theileria annulata strain Ankara... 32 9.8
M34135_1(M34135|pid:none) Rat brain alpha-tropomyosin (TMBr-1) m... 32 9.8
I67849(I67849) tropomyosin - rat &L24776_1(L24776|pid:none) 32 9.8
AL590431_6(AL590431|pid:none) Human DNA sequence from clone RP11... 32 9.8
CP000934_3482(CP000934|pid:none) Cellvibrio japonicus Ueda107, c... 32 9.8
X02412_1(X02412|pid:none) Rat mRNA fragment for striated muscle ... 32 9.8
CP001083_1678(CP001083|pid:none) Clostridium botulinum Ba4 str. ... 32 9.8
M18135_4(M18135|pid:none) Rat alpha-tropomyosin gene, exon 12. 32 9.8
(Q0SMJ3) RecName: Full=GTP-binding protein era homolog; &CP0003... 32 9.8
AK032942_1(AK032942|pid:none) Mus musculus 12 days embryo male w... 32 9.8
CP001176_1703(CP001176|pid:none) Bacillus cereus B4264, complete... 32 9.8
AF411929_1(AF411929|pid:none) Plasmodium falciparum strain FVO n... 32 9.8
(P58771) RecName: Full=Tropomyosin alpha-1 chain; AltName: Full=... 32 9.8
AL161546_3(AL161546|pid:none) Arabidopsis thaliana DNA chromosom... 32 9.8
BC145307_1(BC145307|pid:none) Mus musculus tropomyosin 1, alpha,... 32 9.8
M34136_1(M34136|pid:none) Rat brain alpha-tropomyosin (TMBr-3) m... 32 9.8
AL034559_4(AL034559|pid:none) Plasmodium falciparum MAL3P7, comp... 32 9.8
AM942759_282(AM942759|pid:none) Proteus mirabilis strain HI4320,... 32 9.8
CP000472_2820(CP000472|pid:none) Shewanella piezotolerans WP3, c... 32 9.8
AL844503_21(AL844503|pid:none) Plasmodium falciparum 3D7 chromos... 32 9.8
M15474_1(M15474|pid:none) Rat alpha-tropomyosin gene, exon 11. 32 9.8
AL590431_9(AL590431|pid:none) Human DNA sequence from clone RP11... 32 9.8
C34787(C34787)tropomyosin 3 alpha, brain - rat 32 9.8
AP009608_323(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ... 32 9.8
A64505(A64505)P115 homolog - Methanococcus jannaschii 32 9.8
AL590431_4(AL590431|pid:none) Human DNA sequence from clone RP11... 32 9.8
AK031564_1(AK031564|pid:none) Mus musculus 13 days embryo male t... 32 9.8
B71441(B71441) probable myosin II heavy chain - Arabidopsis thal... 32 9.8
>AY048212_1(AY048212|pid:none) Arabidopsis thaliana
At2g07350/T13E11.12 mRNA, complete cds.
&AY087310_1(AY087310|pid:none)
&AY094019_1(AY094019|pid:none)
&FB870155_1(FB870155|pid:none)
Length = 128
Score = 77.0 bits (188), Expect = 2e-13
Identities = 35/110 (31%), Positives = 66/110 (60%)
Frame = +2
Query: 83 KQAFFETREKLYTLSRSLNIIKQRIQIAENDRKKCLITINELESLSSETKTYKAVGKMFV 262
+ AF E + + L+ L ++ +++ E DRK+ +T+ EL L ET TYK++G+ FV
Sbjct: 7 RAAFMEIQASMIELTGKLKQVQNQMRNKEGDRKRAFLTLEELRPLPEETNTYKSIGRTFV 66
Query: 263 ISPMTSLKTELKQQVQKDEEDVKGLINQSKYIDAQITDTERSLNELVRKK 412
+ P T L+ E +Q+++ E V L +Y++ Q+ + E +L EL++++
Sbjct: 67 LEPKTVLEGEQEQKLKDSEAAVASLQTSKEYLEKQVAEVENNLRELLQQE 116
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 442,745,590
Number of extensions: 6228448
Number of successful extensions: 21832
Number of sequences better than 10.0: 173
Number of HSP's gapped: 21789
Number of HSP's successfully gapped: 173
Length of query: 160
Length of database: 1,051,180,864
Length adjustment: 118
Effective length of query: 42
Effective length of database: 669,266,902
Effective search space: 28109209884
Effective search space used: 28109209884
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
1 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
0 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |