Contig-U14335-1
Contig ID Contig-U14335-1
Contig update 2002.12.18
Contig sequence
>Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Contig-U14335-1Q.Seq.d
CAACATTCTGCATCGGCCGATCATAATCAAGCATCCATTCAAAATAGAAT
TAGATCACCATCAACCATTGATACAATTAATATTTGGGATGAATTGAAAA
CCATTAAAACCATACCAACCGTACCAAAAGATGGTTCAATATTAAAGGTT
ACATTGAACCAATTGGTGTTAATGTTAACTTCGGAAACTTCATACGATAG
TAAATTCCTTAAAACTTTTATCACCACCTATCAATCATTCGCTTCACCTG
GTGTTCTATTCACAAAGTTGATAGAACGTTTCTACGTACCAGAATGGTAT
AGTACTGTACCCACTAAAATTAGCACAATTCAACAAAAGGTAATCGTGGT
TTTAAAATATTGGATTGAAAATCAATCATCGGATTTCGATCAAGATGTTA
TCGATCAAATTTACTTTTTCATTAATAATTTGGCAAATTCAAATGAAGGC
TATTCAGAATTGTCTAGATTATTACGTGGTTTATTGGATAAAATGATTCA
AGATCGTGAAGTTAAATTTGAACTCCTATTTCAAATGCCACCAAGAATCT
CTTTTGAAGAGGATTCAATCTTATCTCCAATTGAATTATTCTCTGAATGG
AGTGCTCAATCAATTGCTCAACAATTAACTCTAATAGATTTCTCTATCTT
TAAAGATTTGGAAGCAAGAGAATTATTAAATCAAAATTTTAATAAACCAA
AATTAAAGTATAAATCACCAGACAATTATGAGAATGATTTCAAAATCAAC
TCAATTTTCATTTTGGGTTGCATATGTTATTTTAATGGAACCAAAAAAAG
AAAAAAGAATTAAAATTTTTGAAAAGTTTTGTGAAGTTGGTAAATATTTA
TTAAAGATGAATAATTTCAATTCTTTAATGGGTTTAAATGCTGGTTTAAA
TTTAACTTGTGTTCATAGATTAAAGAAAACAAAGAAAAAGTTATCATCAT
CTGCTATTTCAATTTTAACTGAATTGGAAAGAATTTTCTCTTCAAAGAAA
TCTTTTAAAAATTATAGAGATCATTTATCAACTGTACAATTACCATGTAT
TCCATATTTAGGATTTAATTTAACAGATATTACATTTATTGAAGAAGGTA
ATACTGATAATATTTCATCAACGGATCCAGCAGCAGCAAATATTGGACCA
TTAATTAATTTTAAAAAGAGAGAATTACTTTACCAAGCATGGGCTGATCT
TAGTAGATTCCAAGAAACTCCATACACTTTCCAACCTGAAGAACCATTAA
ATACTTTCTTATTAAATTTCCCAATTTTAGATNATAAAGCAACTTTANAT
TTATC

Gap no gap
Contig length 1305
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 950669
End point 951983
Strand (PLUS/MINUS) PLUS
Number of clones 6
Number of EST 6
Link to clone list U14335
List of clone(s)

est1=VHD192Z,1,771
est2=SHK405Z,19,772
est3=VHO503Z,119,763
est4=CHH693Z,244,638
est5=SHC805Z,671,1315
est6=VHH156Z,732,1315
Translated Amino Acid sequence
QHSASADHNQASIQNRIRSPSTIDTINIWDELKTIKTIPTVPKDGSILKVTLNQLVLMLT
SETSYDSKFLKTFITTYQSFASPGVLFTKLIERFYVPEWYSTVPTKISTIQQKVIVVLKY
WIENQSSDFDQDVIDQIYFFINNLANSNEGYSELSRLLRGLLDKMIQDREVKFELLFQMP
PRISFEEDSILSPIELFSEWSAQSIAQQLTLIDFSIFKDLEARELLNQNFNKPKLKYKSP
DNYENDFKINSIFILGCICYFNGTKKRKKN*nf*kvl*sw*ifikde*fqffngfkcwfk
fnlcs*ikenkekviiicyfnfn*igknflfkeif*kl*rsfinctitmysifri*fnry
yiy*rr*y**yfingsssskywtin*f*keritlpsmg*s**iprnsihfpt*rtikyfl
ikfpnfrx*snfxfi


Translated Amino Acid sequence (All Frames)
Frame A:
QHSASADHNQASIQNRIRSPSTIDTINIWDELKTIKTIPTVPKDGSILKVTLNQLVLMLT
SETSYDSKFLKTFITTYQSFASPGVLFTKLIERFYVPEWYSTVPTKISTIQQKVIVVLKY
WIENQSSDFDQDVIDQIYFFINNLANSNEGYSELSRLLRGLLDKMIQDREVKFELLFQMP
PRISFEEDSILSPIELFSEWSAQSIAQQLTLIDFSIFKDLEARELLNQNFNKPKLKYKSP
DNYENDFKINSIFILGCICYFNGTKKRKKN*nf*kvl*sw*ifikde*fqffngfkcwfk
fnlcs*ikenkekviiicyfnfn*igknflfkeif*kl*rsfinctitmysifri*fnry
yiy*rr*y**yfingsssskywtin*f*keritlpsmg*s**iprnsihfpt*rtikyfl
ikfpnfrx*snfxfi


Frame B:
nilhrpiiikhpfkieldhhqpliqlifgmn*kplkpyqpyqkmvqy*rlh*tnwc*c*l
rklhtivnslkllsppinhslhlvfysqs**nvstyqngivlyplklaqfnkr*swf*ni
glkinhrisikmlsikftfsliiwqiqmkaiqncldyyvvywik*fkivklnlnsyfkch
qesllkriqsylqlnyslngvlnqllnn*l**islslkiwkqeny*ikilinqn*sinhq
timrmiskstqfsfwvayvilmepkkekrikifekfcevgkyllkmnnfnslmglnagln
ltcvhrlkktkkklsssaisiltelerifsskksfknyrdhlstvqlpcipylgfnltdi
tfieegntdnisstdpaaanigplinfkkrellyqawadlsrfqetpytfqpeeplntfl
lnfpildxkatlxl


Frame C:
tfcigrs*ssihsk*n*itinh*yn*ylg*ienh*nhtnrtkrwfnikgyiepigvnvnf
gnfir**ip*nfyhhlsiirftwcsihkvdrtflrtrmv*ycth*n*hnstkgnrgfkil
d*ksiigfrsrcyrsnllfh**fgkfk*rlfriv*iitwfig*ndsrs*s*i*tpisnat
knlf*rgfnlisn*iil*mecsincstinsnrflyl*rfgskriikskf**tkikv*itr
ql*e*fqnqlnfhfglhmlf*wnqkkkkelkflksfvklvniy*r*iisil*wv*mlv*i
*lvfid*rkqrksyhhllfqf*lnwkefslqrnllkiieiiyqlynyhvfhi*dli*qil
hllkkviliifhqriqqqqildh*lilkrenyftkhglilvdskklhtlsnlknh*ilsy
*isqf*xikqlxiy


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14335-1 (Contig-U14335-1Q)
/CSM_Contig/Contig-U14335-1Q.Seq.d
(1305 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Conti... 1570 0.0
Contig-U06339-1 (Contig-U06339-1Q) /CSM_Contig/Conti... 42 0.001
Contig-U12447-1 (Contig-U12447-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12006-1 (Contig-U12006-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U03534-1 (Contig-U03534-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U00307-1 (Contig-U00307-1Q) /CSM_Contig/Conti... 40 0.006
Contig-U12495-1 (Contig-U12495-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U08172-1 (Contig-U08172-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U04925-1 (Contig-U04925-1Q) /CSM_Contig/Conti... 38 0.023
Contig-U01555-1 (Contig-U01555-1Q) /CSM_Contig/Conti... 34 0.37

>Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Contig-U14335-1Q.Seq.d
Length = 1305

Score = 1570 bits (792), Expect = 0.0
Identities = 792/792 (100%)
Strand = Plus / Plus


Query: 1 caacattctgcatcggccgatcataatcaagcatccattcaaaatagaattagatcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 caacattctgcatcggccgatcataatcaagcatccattcaaaatagaattagatcacca 60


Query: 61 tcaaccattgatacaattaatatttgggatgaattgaaaaccattaaaaccataccaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tcaaccattgatacaattaatatttgggatgaattgaaaaccattaaaaccataccaacc 120


Query: 121 gtaccaaaagatggttcaatattaaaggttacattgaaccaattggtgttaatgttaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gtaccaaaagatggttcaatattaaaggttacattgaaccaattggtgttaatgttaact 180


Query: 181 tcggaaacttcatacgatagtaaattccttaaaacttttatcaccacctatcaatcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tcggaaacttcatacgatagtaaattccttaaaacttttatcaccacctatcaatcattc 240


Query: 241 gcttcacctggtgttctattcacaaagttgatagaacgtttctacgtaccagaatggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 gcttcacctggtgttctattcacaaagttgatagaacgtttctacgtaccagaatggtat 300


Query: 301 agtactgtacccactaaaattagcacaattcaacaaaaggtaatcgtggttttaaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 agtactgtacccactaaaattagcacaattcaacaaaaggtaatcgtggttttaaaatat 360


Query: 361 tggattgaaaatcaatcatcggatttcgatcaagatgttatcgatcaaatttactttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tggattgaaaatcaatcatcggatttcgatcaagatgttatcgatcaaatttactttttc 420


Query: 421 attaataatttggcaaattcaaatgaaggctattcagaattgtctagattattacgtggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 attaataatttggcaaattcaaatgaaggctattcagaattgtctagattattacgtggt 480


Query: 481 ttattggataaaatgattcaagatcgtgaagttaaatttgaactcctatttcaaatgcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttattggataaaatgattcaagatcgtgaagttaaatttgaactcctatttcaaatgcca 540


Query: 541 ccaagaatctcttttgaagaggattcaatcttatctccaattgaattattctctgaatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ccaagaatctcttttgaagaggattcaatcttatctccaattgaattattctctgaatgg 600


Query: 601 agtgctcaatcaattgctcaacaattaactctaatagatttctctatctttaaagatttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 agtgctcaatcaattgctcaacaattaactctaatagatttctctatctttaaagatttg 660


Query: 661 gaagcaagagaattattaaatcaaaattttaataaaccaaaattaaagtataaatcacca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661 gaagcaagagaattattaaatcaaaattttaataaaccaaaattaaagtataaatcacca 720


Query: 721 gacaattatgagaatgatttcaaaatcaactcaattttcattttgggttgcatatgttat 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721 gacaattatgagaatgatttcaaaatcaactcaattttcattttgggttgcatatgttat 780


Query: 781 tttaatggaacc 792
||||||||||||
Sbjct: 781 tttaatggaacc 792


Score = 977 bits (493), Expect = 0.0
Identities = 499/499 (100%)
Strand = Plus / Plus


Query: 807 gaattaaaatttttgaaaagttttgtgaagttggtaaatatttattaaagatgaataatt 866
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 807 gaattaaaatttttgaaaagttttgtgaagttggtaaatatttattaaagatgaataatt 866


Query: 867 tcaattctttaatgggtttaaatgctggtttaaatttaacttgtgttcatagattaaaga 926
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 867 tcaattctttaatgggtttaaatgctggtttaaatttaacttgtgttcatagattaaaga 926


Query: 927 aaacaaagaaaaagttatcatcatctgctatttcaattttaactgaattggaaagaattt 986
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 927 aaacaaagaaaaagttatcatcatctgctatttcaattttaactgaattggaaagaattt 986


Query: 987 tctcttcaaagaaatcttttaaaaattatagagatcatttatcaactgtacaattaccat 1046
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 987 tctcttcaaagaaatcttttaaaaattatagagatcatttatcaactgtacaattaccat 1046


Query: 1047 gtattccatatttaggatttaatttaacagatattacatttattgaagaaggtaatactg 1106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1047 gtattccatatttaggatttaatttaacagatattacatttattgaagaaggtaatactg 1106


Query: 1107 ataatatttcatcaacggatccagcagcagcaaatattggaccattaattaattttaaaa 1166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1107 ataatatttcatcaacggatccagcagcagcaaatattggaccattaattaattttaaaa 1166


Query: 1167 agagagaattactttaccaagcatgggctgatcttagtagattccaagaaactccataca 1226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1167 agagagaattactttaccaagcatgggctgatcttagtagattccaagaaactccataca 1226


Query: 1227 ctttccaacctgaagaaccattaaatactttcttattaaatttcccaattttagatnata 1286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1227 ctttccaacctgaagaaccattaaatactttcttattaaatttcccaattttagatnata 1286


Query: 1287 aagcaactttanatttatc 1305
|||||||||||||||||||
Sbjct: 1287 aagcaactttanatttatc 1305


>Contig-U06339-1 (Contig-U06339-1Q) /CSM_Contig/Contig-U06339-1Q.Seq.d
Length = 661

Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus


Query: 1147 accattaattaattttaaaaa 1167
|||||||||||||||||||||
Sbjct: 259 accattaattaattttaaaaa 279


>Contig-U12447-1 (Contig-U12447-1Q) /CSM_Contig/Contig-U12447-1Q.Seq.d
Length = 1511

Score = 40.1 bits (20), Expect = 0.006
Identities = 20/20 (100%)
Strand = Plus / Minus


Query: 835 agttggtaaatatttattaa 854
||||||||||||||||||||
Sbjct: 347 agttggtaaatatttattaa 328


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 25,603
Number of Sequences: 6905
Number of extensions: 25603
Number of successful extensions: 2792
Number of sequences better than 10.0: 304
length of query: 1305
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1289
effective length of database: 5,564,391
effective search space: 7172499999
effective search space used: 7172499999
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.21
Homology vs DNA
Query= Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Contig-U14335-1Q.Seq.d
(1305 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ438406) Dictyostelium discoideum cDNA clone:ddv37g23, 3' ... 1505 0.0 1
(AY160107) Dictyostelium discoideum nucleotide exchange fact... 1427 0.0 2
(AC115682) Dictyostelium discoideum chromosome 2 map 4101105... 1427 0.0 2
(BJ407930) Dictyostelium discoideum cDNA clone:dds44j02, 3' ... 1411 0.0 2
(BJ445609) Dictyostelium discoideum cDNA clone:ddv60e01, 3' ... 1275 0.0 1
(BJ404626) Dictyostelium discoideum cDNA clone:dds29j02, 3' ... 833 0.0 3
(BJ441107) Dictyostelium discoideum cDNA clone:ddv45o13, 3' ... 868 0.0 2
(BJ380343) Dictyostelium discoideum cDNA clone:ddc37i24, 3' ... 575 0.0 2
(AF474377) Dictyostelium discoideum Ras GTP exchange factor ... 38 0.002 4
(AY160100) Dictyostelium discoideum nucleotide exchange fact... 38 0.006 4
(AY160106) Dictyostelium discoideum nucleotide exchange fact... 38 0.010 5
(BJ383033) Dictyostelium discoideum cDNA clone:ddc46l15, 3' ... 34 0.041 4
(DU459838) 1098421069776 CHORI-243 Ovis aries genomic clone ... 52 0.054 1
(DU448632) 1098448318244 CHORI-243 Ovis aries genomic clone ... 52 0.054 1
(DU347087) 1098313117284 CHORI-243 Ovis aries genomic clone ... 52 0.054 1
(AW335625) S49E8 AGS-1 Pneumocystis carinii cDNA 3', mRNA se... 52 0.054 1
(EJ976227) 1093022120247 Global-Ocean-Sampling_GS-30-02-01-1... 40 0.060 2
(CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 34 0.14 25
(AC173442) Atelerix albiventris clone LB4-153N11, WORKING DR... 50 0.21 1
(EF079540) Boerhavia dominii isolate NYBG02 NADH dehydrogena... 36 0.24 3
(EF079531) Boerhavia repens isolate JSR2 NADH dehydrogenase ... 36 0.25 3
(EF079514) Boerhavia linearifolia isolate 2102 NADH dehydrog... 36 0.25 3
(EF079525) Boerhavia coccinea isolate 13275 NADH dehydrogena... 36 0.25 3
(BD452704) Diagnosis of Diseases Associated with tumor suppr... 36 0.25 4
(BD428939) Method and nucleic acids for pharmacogenomic meth... 36 0.25 4
(AX348418) Sequence 113 from Patent WO0202806. 36 0.25 4
(AX346374) Sequence 1445 from Patent WO0200928. 36 0.25 4
(AX251183) Sequence 151 from Patent WO0168912. 36 0.25 4
(EF079533) Boerhavia gracillima isolate NMSU14 NADH dehydrog... 36 0.26 3
(EF079521) Boerhavia anisophylla isolate 2194 NADH dehydroge... 36 0.26 3
(AC116551) Dictyostelium discoideum chromosome 2 map complem... 34 0.26 9
(CN293440) 17000600169587 GRN_PRENEU Homo sapiens cDNA 5', m... 34 0.45 3
(AC118708) Mus musculus chromosome 7, clone RP24-118K11, com... 34 0.46 2
(AP009769) Lotus japonicus genomic DNA, clone: LjT13A22, TM1... 44 0.47 5
(AL953915) Zebrafish DNA sequence from clone CH211-210F6. 38 0.50 4
(AC216469) Populus trichocarpa clone POP036-C22, complete se... 38 0.52 7
(EK189263) 1095460013061 Global-Ocean-Sampling_GS-31-01-01-1... 42 0.71 2
(AC196750) Citrus sinensis clone CSRBBa-018A12, WORKING DRAF... 36 0.77 8
(BV378494) S245P660FH3.T0 SpanishGrayWolf Canis lupus STS ge... 48 0.84 1
(AC160022) Pan troglodytes BAC clone CH251-424F19 from chrom... 48 0.84 1
(AC159907) Pan troglodytes BAC clone CH251-286G18 from chrom... 48 0.84 1
(AC183492) Brassica oleracea Contig G, complete sequence. 48 0.84 1
(AX345274) Sequence 345 from Patent WO0200928. 48 0.84 1
(AC093524) Homo sapiens chromosome 16 clone RP11-185O21, com... 48 0.84 1
(AC159508) Bos taurus clone CH240-72D15, WORKING DRAFT SEQUE... 48 0.84 1
(AC134995) Rattus norvegicus clone CH230-469G10, *** SEQUENC... 48 0.84 1
(AC128593) Rattus norvegicus clone CH230-217E19, *** SEQUENC... 48 0.84 1
(AC121753) Rattus norvegicus clone CH230-157K24, WORKING DRA... 48 0.84 1
(AC217050) Zea mays chromosome 1 clone CH201-46G5; ZMMBBc004... 48 0.84 1
(AC203090) Zea mays chromosome 1 clone CH201-297B19; ZMMBBc0... 48 0.84 1
(AC174521) Bos taurus clone CH240-524C10, WORKING DRAFT SEQU... 48 0.84 1
(FE242157) CAPG7033.rev CAPG Naegleria gruberi amoeba stage ... 48 0.84 1
(EF079517) Anulocaulis leiosolenus var. leiosolenus isolate ... 36 0.87 3
(EF079513) Cyphomeris gypsophiloides isolate 2100 NADH dehyd... 36 0.88 3
(EF079523) Boerhavia purpurascens isolate 13261 NADH dehydro... 36 0.89 3
(EF079522) Okenia hypogaea isolate 2206 NADH dehydrogenase s... 36 0.89 3
(EF079527) Boerhavia intermedia isolate 13279 NADH dehydroge... 36 0.89 3
(AC121952) Mus musculus BAC clone RP24-217M18 from chromosom... 44 0.89 4
(EF079526) Boerhavia spicata isolate 13276 NADH dehydrogenas... 36 0.89 3
(EF079519) Allionia choisyi isolate 2187 NADH dehydrogenase ... 36 0.91 3
(EF079518) Boerhavia lateriflora isolate 2161 NADH dehydroge... 36 0.91 3
(EF079557) Anulocaulis annulatus isolate s3162 NADH dehydrog... 36 0.91 3
(EF079524) Boerhavia coulteri var. palmeri isolate 13273 NAD... 36 0.91 3
(EF079520) Anulocaulis reflexus isolate 2192 NADH dehydrogen... 36 0.92 3
(AM426542) Vitis vinifera contig VV78X204894.3, whole genome... 42 0.94 4
(CD648477) AUF_102_O04_T7 Crassostrea virginica Gill Crassos... 40 0.95 2
(BJ385937) Dictyostelium discoideum cDNA clone:ddc56k14, 3' ... 30 0.98 4
(EJ693881) 1092956012315 Global-Ocean-Sampling_GS-30-02-01-1... 38 1.1 2
(EJ658634) 1092955015191 Global-Ocean-Sampling_GS-30-02-01-1... 38 1.1 2
(CU638680) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 34 1.2 11
(AC021844) Homo sapiens chromosome 5 clone RP11-15D23, WORKI... 44 1.3 7
(AL139418) Human DNA sequence from clone RP4-608O15 on chrom... 40 1.4 4
(AY160099) Dictyostelium discoideum nucleotide exchange fact... 34 1.5 4
(AX344958) Sequence 29 from Patent WO0200928. 40 1.7 2
(BH567612) BOGBA58TF BOGB Brassica oleracea genomic clone BO... 32 2.0 3
(AC022451) Homo sapiens chromosome 5 clone XXp1-1200G4, LOW-... 46 2.0 6
(BX372712) human full-length cDNA 3-PRIME end of clone CS0DC... 34 2.1 3
(AC092328) Homo sapiens chromosome 5 clone RP11-15D23, WORKI... 44 2.1 6
(DX390095) AGAA-aaa40b04.b1 AGAA Anolis smaragdinus genomic,... 34 2.3 2
(CT573321) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 36 2.5 5
(BX927092) Zebrafish DNA sequence from clone CH211-69I15 in ... 40 2.7 4
(AC128281) Rattus norvegicus clone CH230-322G2, WORKING DRAF... 40 2.7 6
(EJ318000) 1095403321925 Global-Ocean-Sampling_GS-27-01-01-1... 40 2.9 2
(DH628427) Rattus norvegicus DNA, BAC clone: RNB1-163L24, 5'... 38 3.0 2
(AC024857) Caenorhabditis elegans cosmid Y71G12A, complete s... 40 3.0 5
(FH283053) CHO_OF4164xg19f1.ab1 CHO_OF4 Nicotiana tabacum ge... 30 3.2 3
(AC100035) Mus musculus clone RP23-31A23, LOW-PASS SEQUENCE ... 46 3.2 2
(AC161873) Mus musculus BAC clone RP24-100P9 from chromosome... 36 3.3 7
(CT030164) Mouse DNA sequence from clone RP23-311P8 on chrom... 46 3.3 1
(AL645753) Mouse DNA sequence from clone CT7-315N12 on chrom... 46 3.3 1
(AC159211) Mus musculus BAC clone RP23-33F21 from chromosome... 46 3.3 1
(AC116469) Mus musculus chromosome 5, clone RP23-171F16, com... 46 3.3 1
(AC110518) Mus musculus chromosome 1, clone RP23-10P1, compl... 46 3.3 1
(AC102876) Mus musculus chromosome 1, clone RP24-492P7, comp... 46 3.3 1
(AC098882) Mus musculus BAC clone RP23-122D13 from 12, compl... 46 3.3 1
(AE014297) Drosophila melanogaster chromosome 3R, complete s... 46 3.3 1
(AC008195) Drosophila melanogaster, chromosome 3R, region 93... 46 3.3 1
(AC004226) Homo sapiens chromosome 5, BAC clone 313n8 (LBNL ... 46 3.3 1
(AC162559) Bos taurus clone CH240-121L14, WORKING DRAFT SEQU... 46 3.3 1
(AC151562) Dasypus novemcinctus clone VMRC5-431N19, WORKING ... 46 3.3 1

>(BJ438406) Dictyostelium discoideum cDNA clone:ddv37g23, 3' end,
single read.
Length = 772

Score = 1505 bits (759), Expect = 0.0
Identities = 761/762 (99%)
Strand = Plus / Minus


Query: 1 caacattctgcatcggccgatcataatcaagcatccattcaaaatagaattagatcacca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 762 caacattctgcatcggccgatcataatcaagcatccattcaaaatagaattagatcacca 703


Query: 61 tcaaccattgatacaattaatatttgggatgaattgaaaaccattaaaaccataccaacc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 702 tcaaccattgatacaattaatatttgggatgaattgaaaaccattaaaaccataccaacc 643


Query: 121 gtaccaaaagatggttcaatattaaaggttacattgaaccaattggtgttaatgttaact 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 gtaccaaaagatggttcaatattaaaggttacattgaaccaattggtgttaatgttaact 583


Query: 181 tcggaaacttcatacgatagtaaattccttaaaacttttatcaccacctatcaatcattc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tcggaaacttcatacgatagtaaattccttaaaacttttatcaccacctatcaatcattc 523


Query: 241 gcttcacctggtgttctattcacaaagttgatagaacgtttctacgtaccagaatggtat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 gcttcacctggtgttctattcacaaagttgatagaacgtttctacgtaccagaatggtat 463


Query: 301 agtactgtacccactaaaattagcacaattcaacaaaaggtaatcgtggttttaaaatat 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agtactgtacccactaaaattagcacaattcaacaaaaggtaatcgtggttttaaaatat 403


Query: 361 tggattgaaaatcaatcatcggatttcgatcaagatgttatcgatcaaatttactttttc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tggattgaaaatcaatcatcggatttcgatcaagatgttatcgatcaaatttactttttc 343


Query: 421 attaataatttggcaaattcaaatgaaggctattcagaattgtctagattattacgtggt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 attaataatttggcaaattcaaatgaaggctattcagaattgtctagattattacgtggt 283


Query: 481 ttattggataaaatgattcaagatcgtgaagttaaatttgaactcctatttcaaatgcca 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 ttattggataaaatgattcaagatcgtgaagttaaatttgaactcctatttcaaatgcca 223


Query: 541 ccaagaatctcttttgaagaggattcaatcttatctccaattgaattattctctgaatgg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ccaagaatctcttttgaagaggattcaatcttatctccaattgaattattctctgaatgg 163


Query: 601 agtgctcaatcaattgctcaacaattaactctaatagatttctctatctttaaagatttg 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 agtgctcaatcaattgctcaacaattaactctaatagatttctctatctttaaagatttg 103


Query: 661 gaagcaagagaattattaaatcaaaattttaataaaccaaaattaaagtataaatcacca 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gaagcaagagaattattaaatcaaaattttaataaaccaaaattaaagtataaatcacca 43


Query: 721 gacaattatgagaatgatttcaaaatcaactcaattttcatt 762
||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 42 gacaattatgagaatgatttcaaaatcaactcaatnttcatt 1

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,668,011,421
Number of extensions: 108642295
Number of successful extensions: 9143500
Number of sequences better than 10.0: 181
Length of query: 1305
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1281
Effective length of database: 97,308,875,965
Effective search space: 124652670111165
Effective search space used: 124652670111165
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14335-1 (Contig-U14335-1Q) /CSM_Contig/Contig-U14335-1Q.Seq.d
(1305 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value

AC115682_8(AC115682|pid:none) Dictyostelium discoideum chromosom... 473 e-132
AY160099_1(AY160099|pid:none) Dictyostelium discoideum nucleotid... 112 2e-47
CU633900_651(CU633900|pid:none) Podospora anserina genomic DNA c... 80 2e-27
BC143367_1(BC143367|pid:none) Homo sapiens son of sevenless homo... 76 6e-27
AB209277_1(AB209277|pid:none) Homo sapiens mRNA for son of seven... 76 6e-27
AC117082_5(AC117082|pid:none) Dictyostelium discoideum chromosom... 95 4e-26
(Q02384) RecName: Full=Son of sevenless homolog 2; Shor... 72 9e-26
S25714(S25714) son-of-sevenless-2 protein - mouse (fragment) &Z... 72 9e-26
BT015294_1(BT015294|pid:none) Drosophila melanogaster GH01796 fu... 73 2e-25
(P26675) RecName: Full=Protein son of sevenless; &A41216(A41216... 73 2e-25
M83931_1(M83931|pid:none) Drosophila melanogaster son of sevenle... 73 2e-25
AE017356_184(AE017356|pid:none) Cryptococcus neoformans var. neo... 78 1e-24
S25716(S25716;S21391) Ras guanine nucleotide exchange factor son... 71 1e-24
(Q62245) RecName: Full=Son of sevenless homolog 1; Shor... 71 1e-24
AY902349_1(AY902349|pid:none) Mus musculus strain CAST/EiJ son o... 71 1e-24
AK140310_1(AK140310|pid:none) Mus musculus adult male adrenal gl... 71 1e-24
(Q07889) RecName: Full=Son of sevenless homolog 1; Shor... 69 2e-24
AC019171_1(AC019171|pid:none) Homo sapiens BAC clone RP11-173C1 ... 69 2e-24
AF441482_1(AF441482|pid:none) Homo sapiens alternate SOS1 (SOS1)... 69 2e-24
AB209140_1(AB209140|pid:none) Homo sapiens mRNA for son of seven... 69 2e-24
A37488(A37488)Ras guanine nucleotide exchange factor son-of-seve... 69 4e-24
AM920436_178(AM920436|pid:none) Penicillium chrysogenum Wisconsi... 85 1e-23
AC116986_28(AC116986|pid:none) Dictyostelium discoideum chromoso... 94 1e-23
U53884_1(U53884|pid:none) Dictyostelium discoideum aimless RasGE... 113 2e-23
AY160090_1(AY160090|pid:none) Dictyostelium discoideum nucleotid... 113 2e-23
AY160100_1(AY160100|pid:none) Dictyostelium discoideum nucleotid... 94 5e-23
AF474377_1(AF474377|pid:none) Dictyostelium discoideum Ras GTP e... 94 5e-23
AY160098_1(AY160098|pid:none) Dictyostelium discoideum nucleotid... 108 3e-22
AF094679_1(AF094679|pid:none) Mus musculus Sos1 gene, exon and p... 67 5e-22
AP007162_207(AP007162|pid:none) Aspergillus oryzae RIB40 genomic... 78 3e-21
AY160095_1(AY160095|pid:none) Dictyostelium discoideum nucleotid... 74 6e-21
AC116987_20(AC116987|pid:none) Dictyostelium discoideum chromoso... 97 1e-18
AC115592_17(AC115592|pid:none) Dictyostelium discoideum chromoso... 97 1e-18
AF275723_1(AF275723|pid:none) Dictyostelium discoideum Ras guani... 96 2e-18
A75971_1(A75971|pid:none) Sequence 7 from Patent WO9321314. 70 1e-16
CR382124_382(CR382124|pid:none) Kluyveromyces lactis strain NRRL... 70 2e-16
(Q9USU1) RecName: Full=Ras guanine nucleotide exchange factor ef... 89 3e-16
AY254473_1(AY254473|pid:none) Dictyostelium discoideum nucleotid... 74 5e-16
(O77086) RecName: Full=Guanine nucleotide-releasing factor 2; Al... 72 1e-15
AE014298_985(AE014298|pid:none) Drosophila melanogaster chromoso... 72 1e-15
AE014298_984(AE014298|pid:none) Drosophila melanogaster chromoso... 72 1e-15
AE014298_983(AE014298|pid:none) Drosophila melanogaster chromoso... 72 1e-15
BT025818_1(BT025818|pid:none) Drosophila melanogaster IP03271 fu... 72 1e-15
AE014298_987(AE014298|pid:none) Drosophila melanogaster chromoso... 72 1e-15
AF053358_1(AF053358|pid:none) Drosophila melanogaster guanine nu... 72 1e-15
AF321469_1(AF321469|pid:none) Yarrowia lipolytica Ras guanine-nu... 75 3e-15
AY160093_1(AY160093|pid:none) Dictyostelium discoideum nucleotid... 79 5e-15
AL031966_1(AL031966|pid:none) S.pombe chromosome III cosmid c1442. 83 2e-14
AY149915_1(AY149915|pid:none) Ustilago maydis guanyl nucleotide ... 65 3e-14
CR382130_894(CR382130|pid:none) Yarrowia lipolytica strain CLIB1... 81 7e-14
(A2CEA7) RecName: Full=Ras-specific guanine nucleotide-releasing... 80 2e-13
FN357914_21(FN357914|pid:none) Schistosoma mansoni genome sequen... 69 4e-13
L20686_1(L20686|pid:none) Homo sapiens guanine nucleotide releas... 70 9e-13
AE017353_159(AE017353|pid:none) Cryptococcus neoformans var. neo... 67 1e-12
CP000502_107(CP000502|pid:none) Pichia stipitis CBS 6054 chromos... 77 1e-12
BC131870_1(BC131870|pid:none) Danio rerio zgc:158274, mRNA (cDNA... 71 2e-12
BC166138_1(BC166138|pid:none) Xenopus tropicalis Rap guanine nuc... 76 2e-12
AY160105_1(AY160105|pid:none) Dictyostelium discoideum nucleotid... 75 5e-12
AF094691_1(AF094691|pid:none) Mus musculus guanine nucleotide re... 74 2e-11
AK135070_1(AK135070|pid:none) Mus musculus adult male olfactory ... 74 2e-11
X59868_1(X59868|pid:none) M.musculus CDC25Mm mRNA for guanine nu... 74 2e-11
BC091317_1(BC091317|pid:none) Rattus norvegicus RAS protein-spec... 73 2e-11
AB385202_1(AB385202|pid:none) Synthetic construct DNA, clone: pF... 73 3e-11
A75965_1(A75965|pid:none) Sequence 1 from Patent WO9321314. 73 3e-11
BC041710_1(BC041710|pid:none) Homo sapiens Rap guanine nucleotid... 73 3e-11
AB385192_1(AB385192|pid:none) Synthetic construct DNA, clone: pF... 73 3e-11
AK147696_1(AK147696|pid:none) Mus musculus cDNA, RIKEN full-leng... 73 3e-11
JC7736(JC7736)C3G protein, long type - mouse 73 3e-11
BC129881_1(BC129881|pid:none) Mus musculus Rap guanine nucleotid... 73 3e-11
AK077034_1(AK077034|pid:none) Mus musculus adult male testis cDN... 73 3e-11
AK147468_1(AK147468|pid:none) Mus musculus adult male brain UNDE... 73 3e-11
AL160276_3(AL160276|pid:none) Human DNA sequence from clone RP11... 73 3e-11
(P43069) RecName: Full=Cell division control protein 25; &GN103... 72 4e-11
AY160104_1(AY160104|pid:none) Dictyostelium discoideum nucleotid... 68 6e-11
A75969_1(A75969|pid:none) Sequence 5 from Patent WO9321314. 65 6e-11
AX027844_1(AX027844|pid:none) Sequence 1 from Patent WO0040718. 71 7e-11
BC118719_1(BC118719|pid:none) Xenopus tropicalis hypothetical pr... 61 1e-10
CR858031_1(CR858031|pid:none) Pongo abelii mRNA; cDNA DKFZp459J1... 70 1e-10
AF023130_1(AF023130|pid:none) Homo sapiens Ras-GRF2 mRNA, partia... 70 2e-10
CQ834804_1(CQ834804|pid:none) Sequence 675 from Patent WO2004058... 70 2e-10
(O14827) RecName: Full=Ras-specific guanine nucleotide-releasing... 70 2e-10
(Q5ZJK0) RecName: Full=Ras-specific guanine nucleotide-releasing... 60 2e-10
FM992690_366(FM992690|pid:none) Candida dubliniensis CD36 chromo... 70 2e-10
(Q99JE4) RecName: Full=Ras-specific guanine nucleotide-releasing... 70 2e-10
AF312924_1(AF312924|pid:none) Mus musculus Ral-A exchange factor... 60 4e-10
AK033549_1(AK033549|pid:none) Mus musculus adult male colon cDNA... 60 4e-10
(Q9ERD6) RecName: Full=Ras-specific guanine nucleotide-releasing... 60 4e-10
(Q86X27) RecName: Full=Ras-specific guanine nucleotide-releasing... 60 4e-10
AK018622_1(AK018622|pid:none) Mus musculus adult male cecum cDNA... 60 4e-10
AK169368_1(AK169368|pid:none) Mus musculus 17 days pregnant adul... 60 4e-10
(Q4R7W3) RecName: Full=Ras-specific guanine nucleotide-releasing... 60 4e-10
AK029049_1(AK029049|pid:none) Mus musculus 10 days neonate skin ... 60 4e-10
AK001106_1(AK001106|pid:none) Homo sapiens cDNA FLJ10244 fis, cl... 60 4e-10
(P70392) RecName: Full=Ras-specific guanine nucleotide-releasing... 69 5e-10
GN110865_1(GN110865|pid:none) Sequence 15646 from Patent WO20090... 69 5e-10
(P14771) RecName: Full=Guanine nucleotide exchange factor SDC25; 69 5e-10
M26647_1(M26647|pid:none) Saccharomyces cerevisiae SDC25 gene, c... 69 5e-10
GN103733_1(GN103733|pid:none) Sequence 8514 from Patent WO200903... 69 5e-10
AE013599_2480(AE013599|pid:none) Drosophila melanogaster chromos... 61 6e-10
S14177(S14177;S12942;PS0040)SCD25 protein (version 1) - yeast (S... 68 6e-10
BT010019_1(BT010019|pid:none) Drosophila melanogaster RE10624 fu... 50 8e-10
AF170796_1(AF170796|pid:none) Caenorhabditis elegans RA-GEF (ra-... 52 8e-10
AF308449_1(AF308449|pid:none) Caenorhabditis elegans PXF isoform... 52 8e-10
AK036803_1(AK036803|pid:none) Mus musculus adult female vagina c... 60 8e-10
AF109312_1(AF109312|pid:none) Mus musculus guanine nucleotide re... 67 1e-09
FN357603_14(FN357603|pid:none) Schistosoma mansoni genome sequen... 67 1e-09
CU928180_398(CU928180|pid:none) Kluyveromyces thermotolerans str... 67 2e-09
AC024755_7(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 66 3e-09
AE016817_362(AE016817|pid:none) Ashbya gossypii (= Eremothecium ... 66 3e-09
AC024755_6(AC024755|pid:none) Caenorhabditis elegans cosmid Y34B... 66 3e-09
AY582133_1(AY582133|pid:none) Xenopus laevis Rap1 guanine-nucleo... 55 5e-09
AY160092_1(AY160092|pid:none) Dictyostelium discoideum nucleotid... 63 2e-08
AM920437_1749(AM920437|pid:none) Penicillium chrysogenum Wiscons... 62 3e-08
(B0UXH6) RecName: Full=Ras-specific guanine nucleotide-releasing... 52 7e-08
BC146736_1(BC146736|pid:none) Danio rerio Ral GEF with PH domain... 52 7e-08
AL845277_5(AL845277|pid:none) Mouse DNA sequence from clone RP23... 53 1e-07
BC072656_1(BC072656|pid:none) Mus musculus Ral GEF with PH domai... 53 1e-07
CR380950_274(CR380950|pid:none) Candida glabrata strain CBS138 c... 60 2e-07
AL669999_10(AL669999|pid:none) Neurospora crassa DNA linkage gro... 60 2e-07
AM269957_6(AM269957|pid:none) Aspergillus niger contig An01c0100... 60 2e-07
AK302825_1(AK302825|pid:none) Homo sapiens cDNA FLJ56976 complet... 59 4e-07
(Q9NZ16) RecName: Full=Ras-specific guanine nucleotide-releasing... 52 4e-07
AL160169_5(AL160169|pid:none) Human DNA sequence from clone RP11... 52 4e-07
AL160169_2(AL160169|pid:none) Human DNA sequence from clone RP11... 52 4e-07
BC032372_1(BC032372|pid:none) Homo sapiens Ral GEF with PH domai... 52 4e-07
BC125684_1(BC125684|pid:none) Xenopus tropicalis Rap guanine nuc... 58 9e-07
AK299149_1(AK299149|pid:none) Homo sapiens cDNA FLJ61342 complet... 50 9e-07
BC055185_1(BC055185|pid:none) Danio rerio Ral-A exchange factor ... 50 1e-06
AF251308_1(AF251308|pid:none) Caenorhabditis elegans guanine nuc... 57 2e-06
AC006692_9(AC006692|pid:none) Caenorhabditis elegans cosmid T28F... 57 2e-06
AL845277_2(AL845277|pid:none) Mouse DNA sequence from clone RP23... 49 2e-06
AF478567_1(AF478567|pid:none) Homo sapiens PDZ domain-containing... 56 2e-06
AK302640_1(AK302640|pid:none) Homo sapiens cDNA FLJ53249 complet... 56 2e-06
BC144627_1(BC144627|pid:none) Homo sapiens Rap guanine nucleotid... 56 2e-06
(P04821) RecName: Full=Cell division control protein 25; &GN103... 56 2e-06
AF394782_1(AF394782|pid:none) Homo sapiens rap guanine nucleotid... 56 2e-06
BC017728_1(BC017728|pid:none) Homo sapiens Rap guanine nucleotid... 52 3e-06
(O95398) RecName: Full=Rap guanine nucleotide exchange factor 3;... 52 3e-06
BC092404_1(BC092404|pid:none) Homo sapiens Rap guanine nucleotid... 52 3e-06
AK125545_1(AK125545|pid:none) Homo sapiens cDNA FLJ43557 fis, cl... 52 3e-06
CS416355_1(CS416355|pid:none) Sequence 7 from Patent WO2006094703. 52 3e-06
AM270066_3(AM270066|pid:none) Aspergillus niger contig An04c0050... 55 4e-06
FN357308_23(FN357308|pid:none) Schistosoma mansoni genome sequen... 55 6e-06
AY810144_1(AY810144|pid:none) Schistosoma japonicum SJCHGC07188 ... 55 6e-06
AK143331_1(AK143331|pid:none) Mus musculus 2 days pregnant adult... 55 7e-06
BC025553_1(BC025553|pid:none) Mus musculus Rap guanine nucleotid... 55 7e-06
AL607091_5(AL607091|pid:none) Mouse DNA sequence from clone RP23... 55 7e-06
AL607091_4(AL607091|pid:none) Mouse DNA sequence from clone RP23... 55 7e-06
AL596127_16(AL596127|pid:none) Mouse DNA sequence from clone RP2... 55 7e-06
BC124563_1(BC124563|pid:none) Xenopus tropicalis hypothetical pr... 54 9e-06
AC074344_1(AC074344|pid:none) Homo sapiens BAC clone RP11-138A23... 54 1e-05
AK294459_1(AK294459|pid:none) Homo sapiens cDNA FLJ61094 partial... 54 1e-05
AB002311_1(AB002311|pid:none) Homo sapiens mRNA for KIAA0313 gen... 54 1e-05
EU362913_1(EU362913|pid:none) Drosophila melanogaster dizzy isof... 45 2e-05
AE014134_1119(AE014134|pid:none) Drosophila melanogaster chromos... 45 2e-05
EU362915_1(EU362915|pid:none) Drosophila melanogaster dizzy isof... 45 2e-05
AP007157_830(AP007157|pid:none) Aspergillus oryzae RIB40 genomic... 54 2e-05
AL845277_3(AL845277|pid:none) Mouse DNA sequence from clone RP23... 53 2e-05
AK129123_1(AK129123|pid:none) Mus musculus mRNA for mKIAA0351 pr... 53 2e-05
BT044818_1(BT044818|pid:none) Salmo salar clone ssal-rgf-504-236... 47 3e-05
AK122234_1(AK122234|pid:none) Mus musculus mRNA for mKIAA0277 pr... 52 4e-05
BC020532_1(BC020532|pid:none) Mus musculus Rap guanine nucleotid... 52 4e-05
AK034265_1(AK034265|pid:none) Mus musculus adult male diencephal... 52 4e-05
AK030016_1(AK030016|pid:none) Mus musculus adult male testis cDN... 52 4e-05
BC020311_1(BC020311|pid:none) Mus musculus Rap guanine nucleotid... 52 4e-05
AK083591_1(AK083591|pid:none) Mus musculus 9 days embryo whole b... 52 4e-05
AK029995_1(AK029995|pid:none) Mus musculus adult male testis cDN... 52 4e-05
AK142594_1(AK142594|pid:none) Mus musculus 10 days lactation, ad... 52 4e-05
(Q8VCC8) RecName: Full=Rap guanine nucleotide exchange factor 3;... 52 4e-05
AE013599_215(AE013599|pid:none) Drosophila melanogaster chromoso... 52 5e-05
AE013599_216(AE013599|pid:none) Drosophila melanogaster chromoso... 52 5e-05
AK292983_1(AK292983|pid:none) Homo sapiens cDNA FLJ77595 complet... 52 5e-05
(P83900) RecName: Full=Rap guanine nucleotide exchange factor 5;... 52 5e-05
CU638743_770(CU638743|pid:none) Podospora anserina genomic DNA c... 52 5e-05
D87467_1(D87467|pid:none) Homo sapiens mRNA for KIAA0277 gene, p... 52 5e-05
AB384012_1(AB384012|pid:none) Synthetic construct DNA, clone: pF... 52 6e-05
EF636666_1(EF636666|pid:none) Canis lupus familiaris exchange pr... 52 6e-05
(Q8IV61) RecName: Full=Ras guanyl-releasing protein 3; AltName: ... 52 6e-05
(Q9QUG9) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 47 7e-05
BC119832_1(BC119832|pid:none) Bos taurus RAS guanyl releasing pr... 51 8e-05
(P0C643) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 47 2e-04
BX571854_2(BX571854|pid:none) Zebrafish DNA sequence from clone ... 43 2e-04
AK314091_1(AK314091|pid:none) Homo sapiens cDNA, FLJ94771, highl... 50 2e-04
AF081197_1(AF081197|pid:none) Homo sapiens calcium and DAG-regul... 50 2e-04
(Q9UI94) RecName: Full=RAS guanyl-releasing protein 1; AltName: ... 50 2e-04
AY858556_1(AY858556|pid:none) Homo sapiens RAS guanyl releasing ... 50 2e-04
AF081195_1(AF081195|pid:none) Homo sapiens calcium and DAG-regul... 50 2e-04
AY954625_1(AY954625|pid:none) Homo sapiens Ras guanyl releasing ... 50 2e-04
AC117080_21(AC117080|pid:none) Dictyostelium discoideum chromoso... 50 2e-04
AY160103_1(AY160103|pid:none) Dictyostelium discoideum nucleotid... 50 2e-04
AF081193_1(AF081193|pid:none) Mus musculus calcium and DAG-regul... 47 2e-04
AB154824_1(AB154824|pid:none) Mus musculus mRNA for RasGRP3, com... 50 2e-04
AK173041_1(AK173041|pid:none) Mus musculus mRNA for mKIAA0846 pr... 50 2e-04
(A4IJ06) RecName: Full=RAS guanyl-releasing protein 1; &BC13622... 49 4e-04
AB208848_1(AB208848|pid:none) Homo sapiens mRNA for Ras activato... 48 7e-04
AK141524_1(AK141524|pid:none) Mus musculus adult male hippocampu... 48 7e-04
CR382131_1446(CR382131|pid:none) Yarrowia lipolytica strain CLIB... 40 7e-04
CR749239_1(CR749239|pid:none) Homo sapiens mRNA; cDNA DKFZp781H1... 48 9e-04
AJ720845_1(AJ720845|pid:none) Gallus gallus mRNA for hypothetica... 48 9e-04
AM989988_10(AM989988|pid:none) Zygosaccharomyces rouxii strain C... 35 0.001
AF060819_1(AF060819|pid:none) Rattus norvegicus ras guanyl relea... 47 0.002
(Q9R1K8) RecName: Full=RAS guanyl-releasing protein 1; AltName: ... 47 0.002
(Q6NTL4) RecName: Full=RAS guanyl-releasing protein 1; &BC06894... 47 0.002
(Q1LZ97) RecName: Full=RAS guanyl-releasing protein 4; &BC11613... 47 0.002
AJ720654_1(AJ720654|pid:none) Gallus gallus mRNA for hypothetica... 47 0.002
AK301205_1(AK301205|pid:none) Homo sapiens cDNA FLJ50071 complet... 47 0.002
BC110306_1(BC110306|pid:none) Homo sapiens RAS guanyl releasing ... 46 0.003
AK092882_1(AK092882|pid:none) Homo sapiens cDNA FLJ35563 fis, cl... 46 0.003
BC040183_1(BC040183|pid:none) Homo sapiens Rap guanine nucleotid... 46 0.003
AF043722_1(AF043722|pid:none) Homo sapiens guanine exchange fact... 46 0.003
(Q8R5I4) RecName: Full=RAS guanyl-releasing protein 4; &AF46526... 46 0.003
(Q9Z1C7) RecName: Full=Rap guanine nucleotide exchange factor 4;... 46 0.003
AF465264_1(AF465264|pid:none) Rattus norvegicus ras guanine nucl... 46 0.003
BC040275_1(BC040275|pid:none) Homo sapiens Ras protein-specific ... 46 0.003
AK296340_1(AK296340|pid:none) Homo sapiens cDNA FLJ58368 complet... 45 0.004
AK304278_1(AK304278|pid:none) Homo sapiens cDNA FLJ51189 complet... 45 0.004
BC024004_1(BC024004|pid:none) Homo sapiens Rap guanine nucleotid... 45 0.004
(A6N9I4) RecName: Full=RAS guanyl-releasing protein 2; AltName: ... 45 0.004
AK316014_1(AK316014|pid:none) Homo sapiens cDNA, FLJ78913 comple... 45 0.004
AB075513_1(AB075513|pid:none) Homo sapiens neuroblastoma cDNA, c... 45 0.004
(Q8WZA2) RecName: Full=Rap guanine nucleotide exchange factor 4;... 45 0.004
BC014426_1(BC014426|pid:none) Homo sapiens ral guanine nucleotid... 45 0.004
(Q8MVR1) RecName: Full=Cyclic GMP-binding protein C; EC... 45 0.004
CS416351_1(CS416351|pid:none) Sequence 3 from Patent WO200609470... 45 0.006
BX640472_3(BX640472|pid:none) Zebrafish DNA sequence from clone ... 45 0.006
(O15211) RecName: Full=Ral guanine nucleotide dissociation stimu... 45 0.006
(Q32N25) RecName: Full=RAS guanyl-releasing protein 2-A; &BC108... 45 0.007
BC143530_1(BC143530|pid:none) Homo sapiens ral guanine nucleotid... 45 0.008
AK220281_1(AK220281|pid:none) Mus musculus mRNA for mKIAA4040 pr... 44 0.010
AK165106_1(AK165106|pid:none) Mus musculus 2 days pregnant adult... 44 0.010
AK162667_1(AK162667|pid:none) Mus musculus adult male bone cDNA,... 44 0.010
T21321(T21321)hypothetical protein F25B3.3 - Caenorhabditis eleg... 44 0.010
(Q9EQZ6) RecName: Full=Rap guanine nucleotide exchange factor 4;... 44 0.010
Z70752_2(Z70752|pid:none) Caenorhabditis elegans Cosmid F25B3, c... 44 0.010
AB445011_1(AB445011|pid:none) Mus musculus cAMP-GEFII mRNA for c... 44 0.010
AB037668_1(AB037668|pid:none) Mus musculus Epac2 mRNA for cAMP-G... 44 0.010
(Q8BTM9) RecName: Full=RAS guanyl-releasing protein 4; &AK08928... 44 0.010
AY040628_1(AY040628|pid:none) Mus musculus RAS guanyl releasing ... 44 0.010
FM992689_618(FM992689|pid:none) Candida dubliniensis CD36 chromo... 44 0.013
BX004769_1(BX004769|pid:none) Zebrafish DNA sequence from clone ... 44 0.017
AX556884_1(AX556884|pid:none) Sequence 1 from Patent WO0240656. 43 0.022
FJ768681_1(FJ768681|pid:none) Homo sapiens RAS guanyl releasing ... 43 0.022
(Q8TDF6) RecName: Full=RAS guanyl-releasing protein 4; &AF44843... 43 0.022
(Q55EC7) RecName: Full=RasGEF domain-containing serine/threonine... 42 0.037
AY048119_1(AY048119|pid:none) Homo sapiens RAS guanyl releasing ... 42 0.063
AY048121_1(AY048121|pid:none) Homo sapiens RAS guanyl releasing ... 42 0.063
AL160276_4(AL160276|pid:none) Human DNA sequence from clone RP11... 42 0.064
AK159754_1(AK159754|pid:none) Mus musculus osteoclast-like cell ... 41 0.083
AK149644_1(AK149644|pid:none) Mus musculus bone marrow macrophag... 41 0.083
(Q9UHV5) RecName: Full=Rap guanine nucleotide exchange factor-li... 41 0.083
AK304160_1(AK304160|pid:none) Homo sapiens cDNA FLJ56384 complet... 41 0.083
AF117946_1(AF117946|pid:none) Homo sapiens Link guanine nucleoti... 41 0.083
AL772249_10(AL772249|pid:none) Mouse DNA sequence from clone RP2... 41 0.083
(Q03385) RecName: Full=Ral guanine nucleotide dissociation stimu... 41 0.083
AK294642_1(AK294642|pid:none) Homo sapiens cDNA FLJ58529 complet... 41 0.083
AK141959_1(AK141959|pid:none) Mus musculus 12 days embryo spinal... 41 0.083
AK144218_1(AK144218|pid:none) Mus musculus CRL-2116 JC cDNA, RIK... 41 0.083
AK316526_1(AK316526|pid:none) Homo sapiens cDNA, FLJ79425 comple... 41 0.11
AC004227_1(AC004227|pid:none) Homo sapiens chromosome 5, P1 clon... 41 0.11
AK295179_1(AK295179|pid:none) Homo sapiens cDNA FLJ50518 complet... 41 0.11
(Q5R9B2) RecName: Full=Rap guanine nucleotide exchange factor-li... 40 0.14
AX460077_1(AX460077|pid:none) Sequence 1 from Patent WO0218577. 40 0.14
AK045540_1(AK045540|pid:none) Mus musculus adult male corpora qu... 40 0.14
AK167055_1(AK167055|pid:none) Mus musculus blastocyst blastocyst... 40 0.14
FN357484_25(FN357484|pid:none) Schistosoma mansoni genome sequen... 40 0.18
(Q0VAM2) RecName: Full=Ras-GEF domain-containing family member 1... 40 0.18
BC121004_1(BC121004|pid:none) Homo sapiens RasGEF domain family,... 40 0.18
AK295616_1(AK295616|pid:none) Homo sapiens cDNA FLJ61275 complet... 40 0.18
AK303625_1(AK303625|pid:none) Homo sapiens cDNA FLJ50337 complet... 40 0.18
(Q5RC04) RecName: Full=Ras-GEF domain-containing family member 1B; 40 0.18
CR858478_1(CR858478|pid:none) Pongo abelii mRNA; cDNA DKFZp469N2... 40 0.18
AK169430_1(AK169430|pid:none) Mus musculus 17 days pregnant adul... 40 0.18
(Q8JZL7) RecName: Full=Ras-GEF domain-containing family member 1... 40 0.18
BC121003_1(BC121003|pid:none) Homo sapiens RasGEF domain family,... 40 0.18
AK164343_1(AK164343|pid:none) Mus musculus 12 days embryo spinal... 40 0.18
DQ246664_3(DQ246664|pid:none) Oncorhynchus mykiss SYPG1 (SYPG1),... 40 0.18
U42834_3(U42834|pid:none) Caenorhabditis elegans cosmid F28B4, c... 40 0.18
AL590963_1(AL590963|pid:none) Mouse DNA sequence from clone RP23... 40 0.24
BC080279_1(BC080279|pid:none) Mus musculus Rap guanine nucleotid... 40 0.24
(Q28EC1) RecName: Full=Ras-GEF domain-containing family member 1... 40 0.24
AK304293_1(AK304293|pid:none) Homo sapiens cDNA FLJ52394 complet... 39 0.32
AL590422_1(AL590422|pid:none) Human DNA sequence from clone RP11... 39 0.32
AF186798_1(AF186798|pid:none) Homo sapiens RalGDS-like (RGL) gen... 39 0.32
AF186798_2(AF186798|pid:none) Homo sapiens RalGDS-like (RGL) gen... 39 0.32
(Q03386) RecName: Full=Ral guanine nucleotide dissociation stimu... 39 0.41
BC149035_1(BC149035|pid:none) Bos taurus ral guanine nucleotide ... 39 0.41
FN357537_13(FN357537|pid:none) Schistosoma mansoni genome sequen... 39 0.41
CR382123_145(CR382123|pid:none) Kluyveromyces lactis strain NRRL... 35 0.43
BC155690_1(BC155690|pid:none) Xenopus tropicalis hypothetical pr... 39 0.54
(A4IFE4) RecName: Full=Ras-GEF domain-containing family member 1... 39 0.54
CU638744_132(CU638744|pid:none) Podospora anserina genomic DNA c... 39 0.54
AK299029_1(AK299029|pid:none) Homo sapiens cDNA FLJ56134 complet... 38 0.70
AF032126_1(AF032126|pid:none) Drosophila melanogaster ral guanin... 38 0.92
(Q3UYI5) RecName: Full=Ral guanine nucleotide dissociation stimu... 38 0.92
AE014296_2462(AE014296|pid:none) Drosophila melanogaster chromos... 38 0.92
BC074379_1(BC074379|pid:none) Xenopus laevis MGC84301 protein, m... 38 0.92
AE014296_2459(AE014296|pid:none) Drosophila melanogaster chromos... 38 0.92
(A0JM95) RecName: Full=Ras-GEF domain-containing family member 1... 38 0.92
AL929533_2(AL929533|pid:none) Zebrafish DNA sequence from clone ... 38 0.92
M68938_1(M68938|pid:none) Yeast (BUD5) gene, complete cds. 37 1.2
BC022548_1(BC022548|pid:none) Homo sapiens RasGEF domain family,... 37 1.2
AF027169_1(AF027169|pid:none) Homo sapiens Ral guanine nucleotid... 37 1.2
(P25300) RecName: Full=Bud site selection protein 5; &X59720_11... 37 1.2
AB037729_1(AB037729|pid:none) Homo sapiens mRNA for KIAA1308 pro... 37 1.2
X63853_1(X63853|pid:none) S.cerevisiae MAT locus genes BUD5, mat... 37 1.2
X56909_5(X56909|pid:none) S.cerevisiae 8.2 kb segment left of MAT. 37 1.2
AK056462_1(AK056462|pid:none) Homo sapiens cDNA FLJ31900 fis, cl... 37 1.2
BT020843_1(BT020843|pid:none) Bos taurus RasGEF domain family, m... 37 1.2
AK074114_1(AK074114|pid:none) Homo sapiens mRNA for FLJ00185 pro... 37 1.2
AK301470_1(AK301470|pid:none) Homo sapiens cDNA FLJ53221 complet... 37 1.2
AK095136_1(AK095136|pid:none) Homo sapiens cDNA FLJ37817 fis, cl... 37 1.2
AK127524_1(AK127524|pid:none) Homo sapiens cDNA FLJ45617 fis, cl... 37 1.2
AK074082_1(AK074082|pid:none) Homo sapiens mRNA for FLJ00153 pro... 37 1.2
AK293997_1(AK293997|pid:none) Homo sapiens cDNA FLJ55326 complet... 37 1.2
BC055678_1(BC055678|pid:none) Danio rerio RasGEF domain family, ... 37 1.2
CR382137_925(CR382137|pid:none) Debaryomyces hansenii strain CBS... 37 1.6
FM992695_606(FM992695|pid:none) Candida dubliniensis CD36 chromo... 37 1.6
(Q5UQ53) RecName: Full=Uncharacterized protein R713; &AY653733_... 37 1.6
CR380948_48(CR380948|pid:none) Candida glabrata strain CBS138 ch... 37 2.0
BC028579_1(BC028579|pid:none) Homo sapiens regulatory factor X, ... 37 2.0
AB179121_1(AB179121|pid:none) Macaca fascicularis testis cDNA cl... 37 2.0
CR857840_1(CR857840|pid:none) Pongo abelii mRNA; cDNA DKFZp459C0... 37 2.0
AK024288_1(AK024288|pid:none) Homo sapiens cDNA FLJ14226 fis, cl... 37 2.0
AK158756_1(AK158756|pid:none) Mus musculus visual cortex cDNA, R... 36 2.7
AP007151_629(AP007151|pid:none) Aspergillus oryzae RIB40 genomic... 36 2.7
BC138284_1(BC138284|pid:none) Mus musculus RasGEF domain family,... 36 2.7
BC145232_1(BC145232|pid:none) Mus musculus RasGEF domain family,... 36 2.7
(Q3MPQ4) RecName: Full=Sorting nexin MVP1; &AP006852_75(AP00685... 36 2.7
AK093160_1(AK093160|pid:none) Homo sapiens cDNA FLJ35841 fis, cl... 36 3.5
BC036802_1(BC036802|pid:none) Homo sapiens RasGEF domain family,... 36 3.5
(Q8N431) RecName: Full=Ras-GEF domain-containing family member 1... 36 3.5
AE014296_3925(AE014296|pid:none) Drosophila melanogaster chromos... 36 3.5
AP009049_1362(AP009049|pid:none) Clostridium kluyveri NBRC 12016... 36 3.5
CP001096_1462(CP001096|pid:none) Rhodopseudomonas palustris TIE-... 36 3.5
BX572597_21(BX572597|pid:none) Rhodopseudomonas palustris CGA009... 36 3.5
BX908798_1363(BX908798|pid:none) Parachlamydia-related symbiont ... 35 4.5
AJ784964_1(AJ784964|pid:none) Borrelia burgdorferi lp54 plasmid. 35 4.6
CP001257_58(CP001257|pid:none) Borrelia burgdorferi 156a plasmid... 35 4.6
CP001447_60(CP001447|pid:none) Borrelia burgdorferi WI91-23 plas... 35 4.6
CP001370_60(CP001370|pid:none) Borrelia burgdorferi 72a plasmid ... 35 4.6
AJ430850_1(AJ430850|pid:none) Borrelia burgdorferi p46 gene for ... 35 4.6
CP001421_59(CP001421|pid:none) Borrelia burgdorferi 64b plasmid ... 35 4.6
CP001199_47(CP001199|pid:none) Borrelia burgdorferi ZS7 plasmid ... 35 4.6
AL645913_2(AL645913|pid:none) Mouse DNA sequence from clone RP23... 35 5.9
BC161641_1(BC161641|pid:none) Xenopus tropicalis hypothetical pr... 35 5.9
(Q9D300) RecName: Full=Ras-GEF domain-containing family member 1... 35 5.9
FM180568_2101(FM180568|pid:none) Escherichia coli 0127:H6 E2348/... 35 6.0
AJ719758_1(AJ719758|pid:none) Gallus gallus mRNA for hypothetica... 35 6.0
(Q95KH6) RecName: Full=Ras-GEF domain-containing family member 1... 35 7.7
CP001473_60(CP001473|pid:none) Borrelia burgdorferi CA-11.2a pla... 35 7.8
BC148113_1(BC148113|pid:none) Bos taurus regulatory factor X, 2 ... 35 7.8
CP001542_57(CP001542|pid:none) Borrelia burgdorferi 118a plasmid... 35 7.8
AE000790_66(AE000790|pid:none) Borrelia burgdorferi B31 plasmid ... 35 7.8

>AC115682_8(AC115682|pid:none) Dictyostelium discoideum chromosome 2
map 4101105-4158643 strain AX4, complete sequence.
&AY160107_1(AY160107|pid:none)
Length = 1043

Score = 473 bits (1218), Expect = e-132
Identities = 240/240 (100%), Positives = 240/240 (100%)
Frame = +1

Query: 1 QHSASADHNQASIQNRIRSPSTIDTINIWDELKTIKTIPTVPKDGSILKVTLNQLVLMLT 180
QHSASADHNQASIQNRIRSPSTIDTINIWDELKTIKTIPTVPKDGSILKVTLNQLVLMLT
Sbjct: 603 QHSASADHNQASIQNRIRSPSTIDTINIWDELKTIKTIPTVPKDGSILKVTLNQLVLMLT 662

Query: 181 SETSYDSKFLKTFITTYQSFASPGVLFTKLIERFYVPEWYSTVPTKISTIQQKVIVVLKY 360
SETSYDSKFLKTFITTYQSFASPGVLFTKLIERFYVPEWYSTVPTKISTIQQKVIVVLKY
Sbjct: 663 SETSYDSKFLKTFITTYQSFASPGVLFTKLIERFYVPEWYSTVPTKISTIQQKVIVVLKY 722

Query: 361 WIENQSSDFDQDVIDQIYFFINNLANSNEGYSELSRLLRGLLDKMIQDREVKFELLFQMP 540
WIENQSSDFDQDVIDQIYFFINNLANSNEGYSELSRLLRGLLDKMIQDREVKFELLFQMP
Sbjct: 723 WIENQSSDFDQDVIDQIYFFINNLANSNEGYSELSRLLRGLLDKMIQDREVKFELLFQMP 782

Query: 541 PRISFEEDSILSPIELFSEWSAQSIAQQLTLIDFSIFKDLEARELLNQNFNKPKLKYKSP 720
PRISFEEDSILSPIELFSEWSAQSIAQQLTLIDFSIFKDLEARELLNQNFNKPKLKYKSP
Sbjct: 783 PRISFEEDSILSPIELFSEWSAQSIAQQLTLIDFSIFKDLEARELLNQNFNKPKLKYKSP 842

Score = 316 bits (809), Expect = 1e-84
Identities = 163/205 (79%), Positives = 165/205 (80%), Gaps = 5/205 (2%)
Frame = +2

Query: 689 LINQN*S-----INHQTIMRMISKSTQFSFWVAYVILMEPXXXXXXXXXXXXCEVGKYLL 853
L+NQN + TIMRMISKSTQFSFWVAYVILMEP CEVGKYLL
Sbjct: 827 LLNQNFNKPKLKYKSPTIMRMISKSTQFSFWVAYVILMEPKKEKRIKIFEKFCEVGKYLL 886

Query: 854 KMNNFNSLMGLNAGLNLTCVHRXXXXXXXXXXXXXXXXXELERIFSSKKSFKNYRDHLST 1033
KMNNFNSLMGLNAGLNLTCVHR ELERIFSSKKSFKNYRDHLST
Sbjct: 887 KMNNFNSLMGLNAGLNLTCVHRLKKTKKKLSSSAISILTELERIFSSKKSFKNYRDHLST 946

Query: 1034 VQLPCIPYLGFNLTDITFIEEGNTDNISSTDPAAANIGPLINFKKRELLYQAWADLSRFQ 1213
VQLPCIPYLGFNLTDITFIEEGNTDNISSTDPAAANIGPLINFKKRELLYQAWADLSRFQ
Sbjct: 947 VQLPCIPYLGFNLTDITFIEEGNTDNISSTDPAAANIGPLINFKKRELLYQAWADLSRFQ 1006

Query: 1214 ETPYTFQPEEPLNTFLLNFPILDXK 1288
ETPYTFQPEEPLNTFLLNFPILD K
Sbjct: 1007 ETPYTFQPEEPLNTFLLNFPILDDK 1031

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,946,698,714
Number of extensions: 36523366
Number of successful extensions: 102665
Number of sequences better than 10.0: 353
Number of HSP's gapped: 102287
Number of HSP's successfully gapped: 512
Length of query: 435
Length of database: 1,051,180,864
Length adjustment: 132
Effective length of query: 303
Effective length of database: 623,955,076
Effective search space: 189058388028
Effective search space used: 189058388028
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)

PSORT

psg: 0.75 gvh: 0.42 alm: 0.41 top: 0.53 tms: 0.00 mit: 0.33 mip: 0.04
nuc: 0.08 erl: 0.00 erm: 0.60 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: nuclear
28.0 %: cytoplasmic
20.0 %: mitochondrial
4.0 %: vacuolar
4.0 %: peroxisomal

>> prediction for Contig-U14335-1 is nuc

VS (DIR, S) 0
VH (FL, L) 3
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 2
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0