| Contig-U14329-1 |
| Contig ID |
Contig-U14329-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
792 |
| Chromosome number (1..6, M) |
6 |
| Chromosome length |
3595308 |
| Start point |
459539 |
| End point |
458744 |
| Strand (PLUS/MINUS) |
MINUS |
| Number of clones |
4 |
| Number of EST |
4 |
| Link to clone list |
U14329 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.21 |
| Homology vs DNA |
Query= Contig-U14329-1 (Contig-U14329-1Q) /CSM_Contig/Contig-U14329-1Q.Seq.d
(792 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AU261549) Dictyostelium discoideum vegetative cDNA clone:VS... 872 0.0 2
(C90685) Dictyostelium discoideum slug cDNA, clone SSJ619. 672 0.0 2
(BJ379810) Dictyostelium discoideum cDNA clone:ddc36f02, 3' ... 799 0.0 1
(AU268440) Dictyostelium discoideum vegetative cDNA clone:VS... 743 0.0 2
(AU074141) Dictyostelium discoideum slug cDNA, clone SSJ619. 244 8e-71 3
(EC819369) SME00000664 esmbsro2 Sawyeria marylandensis cDNA,... 50 2e-05 2
(BE578516) rk13d04.y1 Meloidogyne javanica Egg SL1 Topo1 Klo... 38 5e-05 3
(AM812880) Nicotiana tabacum EST, clone nt002138062. 48 6e-05 2
(FC817411) Sr_pAMT7_08n04_T7 S. ratti mixed stage pAMP Stron... 58 1e-04 2
(FC811832) Sr_pASP6_08n04_SP6 S. ratti mixed stage pAMP Stro... 58 1e-04 2
(EL463193) CHTS17640.b1_P18.ab1 CHT(LMS) Jerusalem artichoke... 44 0.002 2
(AL606744) Mouse DNA sequence from clone RP23-267O21 on chro... 38 0.015 4
(CJ362921) Molgula tectiformis cDNA, cleaving embryo clone:m... 38 0.026 2
(CF811571) NA783 cDNA non acclimated Bluecrop library Vaccin... 34 0.057 3
(AL645532) Mouse DNA sequence from clone RP23-295E4 on chrom... 44 0.065 2
(AC020598) Homo sapiens chromosome 2 clone RP11-404J16, WORK... 40 0.068 3
(CJ394207) Molgula tectiformis cDNA, gonad clone:mtgd021m09,... 38 0.073 2
(CJ352458) Molgula tectiformis cDNA, cleaving embryo clone:m... 38 0.085 2
(CF811518) NA72 cDNA non acclimated Bluecrop library Vaccini... 34 0.10 3
(AC117034) Rattus norvegicus clone CH230-254F13, WORKING DRA... 38 0.12 3
(AC128468) Rattus norvegicus clone CH230-55B6, *** SEQUENCIN... 38 0.12 3
(AC218764) Bos taurus clone CH240-294P3, WORKING DRAFT SEQUE... 42 0.12 4
(EB184461) AHAH-aaa48f10.g1 Pristionchus_pacificus_L4_pDNR_L... 50 0.13 1
(EB184227) AHAH-aaa36g09.g1 Pristionchus_pacificus_L4_pDNR_L... 50 0.13 1
(BM320401) rs89c04.y1 Pristionchus pacificus mixed stage SL1... 50 0.13 1
(FG099767) ioAGSL1p61626364_N02_003.ab1 Pristionchus_pacific... 50 0.13 1
(FG099427) ioAGSL1p53545556_M07_020.ab1 Pristionchus_pacific... 50 0.13 1
(FG097938) ioAGSL1p37383940_L05_021.ab1 Pristionchus_pacific... 50 0.13 1
(FG095369) ioAGSL1p13141516_N14_051.ab1 Pristionchus_pacific... 50 0.13 1
(FG095144) ioAGSL1p13141516_D06_029.ab1 Pristionchus_pacific... 50 0.13 1
(FG094972) ioAGSL1p09101112_L17_069.ab1 Pristionchus_pacific... 50 0.13 1
(AC111412) Rattus norvegicus clone CH230-171O9, *** SEQUENCI... 38 0.13 3
(AC091552) Rattus norvegicus clone CH230-3H8, *** SEQUENCING... 38 0.15 3
(AL669958) Mouse DNA sequence from clone RP23-213K6 on chrom... 42 0.18 4
(DY682573) TTEAF92THC Tetrahymena thermophila EST library, c... 44 0.22 2
(AC096661) Homo sapiens BAC clone RP11-61G24 from 4, complet... 38 0.22 6
(CX573579) TTE00017199 Amplicon Express - Conjugative Form T... 44 0.23 2
(AC016078) Homo sapiens clone RP11-23K3, WORKING DRAFT SEQUE... 38 0.25 7
(DY684425) TTEAV71THB Tetrahymena thermophila EST library, c... 44 0.27 2
(CQ870098) Sequence 519 from Patent WO2004074320. 44 0.27 2
(AC127007) Rattus norvegicus clone CH230-342K24, *** SEQUENC... 38 0.27 3
(CX580713) TTE00018612 Amplicon Express - Conjugative Form T... 44 0.27 2
(AL691448) Mouse DNA sequence from clone RP23-103A1 on chrom... 42 0.29 2
(EC274017) TT1CG74TV Tetrahymena thermophila SB210 cDNA libr... 44 0.30 2
(AC148004) Mus musculus BAC clone RP23-352J18 from chromosom... 42 0.30 2
(DV120021) CV03025A1C11.f1 CV03-normalized library Euphorbia... 32 0.31 3
(AL139135) Human DNA sequence from clone RP11-463J7 on chrom... 38 0.31 7
(BH319449) CH230-31C15.TV CHORI-230 Segment 1 Rattus norvegi... 38 0.32 2
(EL472628) CHTS18956.b1_H11.ab1 CHT(LMS) Jerusalem artichoke... 38 0.34 2
(EL472200) CHTS18527.b1_M23.ab1 CHT(LMS) Jerusalem artichoke... 38 0.34 2
(CX582971) TTE00028538 Amplicon Express - Conjugative Form T... 44 0.34 2
(EE630398) CHEL10286.b1_L04.ab1 CHE(LMS) serpentine sunflowe... 38 0.34 2
(CX585828) TTE00023275 Amplicon Express - Conjugative Form T... 44 0.35 2
(CX582973) TTE00020695 Amplicon Express - Conjugative Form T... 44 0.35 2
(CX586460) TTE00025498 Amplicon Express - Conjugative Form T... 44 0.35 2
(EE660436) CHES3663.b1_M04.ab1 CHE(LMS) serpentine sunflower... 38 0.35 2
(CX587006) TTE00028519 Amplicon Express - Conjugative Form T... 44 0.35 2
(AC110482) Rattus norvegicus clone CH230-200O6, WORKING DRAF... 38 0.35 5
(EV842853) TT1EI72TV Tetrahymena thermophila SB210 cDNA libr... 44 0.36 2
(EL488254) CHUS3479.b1_M05.ab1 CHU(LMS) puzzle sunflower Hel... 38 0.37 2
(EL459060) CHTS12445.b1_J15.ab1 CHT(LMS) Jerusalem artichoke... 38 0.37 2
(EL430329) CHCM9441.b1_A10.ab1 CHC(LMS) Texas blueweed Helia... 38 0.37 2
(BM394716) 50072-2-5-G01.r.1 Chilcoat/Turkewitz cDNA (large ... 44 0.39 2
(DY949313) CHPY500.b1_H05.ab1 CHP(XYZ) plains sunflower Heli... 38 0.40 2
(DY920272) CHAY3655.b1_M02.ab1 CHA(XYZ) common wild sunflowe... 38 0.40 2
(AC192709) Glycine tomentella clone gtd1-115m5, WORKING DRAF... 36 0.41 4
(EV839493) TT1ET09TV Tetrahymena thermophila SB210 cDNA libr... 44 0.41 2
(EL465875) CHTS4749.b1_J11.ab1 CHT(LMS) Jerusalem artichoke ... 38 0.41 2
(AC163869) Bos taurus clone CH240-139J2, *** SEQUENCING IN P... 38 0.41 3
(DV114869) CV03010A1E05.f1 CV03-normalized library Euphorbia... 32 0.41 3
(DV113252) CV03005B1A12.f1 CV03-normalized library Euphorbia... 32 0.42 3
(CB610770) ALBEDO0002_IaF_C05 Mature Albedo Citrus sinensis ... 34 0.42 3
(AC099593) Mus musculus chromosome 10, clone RP23-447D24, co... 36 0.44 5
(AX489209) Sequence 6509 from Patent WO02053728. 48 0.51 1
(CX045803) UCRCS07_4B01_g Parent Washington Navel Orange Thr... 34 0.56 3
(AC173494) Bos taurus clone CH240-182F16, WORKING DRAFT SEQU... 38 0.57 7
(AC125123) Mus musculus BAC clone RP24-270C10 from chromosom... 34 0.62 4
(CU856345) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 0.62 3
(AC161008) Pan troglodytes BAC clone CH251-634F15 from chrom... 38 0.70 4
(CT030700) Zebrafish DNA sequence from clone CH211-179N4 in ... 38 0.71 3
(AC220788) Bos taurus clone CH240-345N6, WORKING DRAFT SEQUE... 38 0.72 7
(CU424444) Zebrafish DNA sequence from clone CH211-149A19 in... 38 0.76 4
(AC010360) Homo sapiens chromosome 5 clone CTD-2033H3, WORKI... 40 0.78 2
(AC119202) Mus musculus chromosome 8, clone RP24-185N3, comp... 40 0.78 2
(AC163654) Mus musculus BAC clone RP23-259M14 from chromosom... 40 0.87 2
(CR854949) Zebrafish DNA sequence from clone BUSM1-225A24. 38 0.92 3
(AC133267) Rattus norvegicus clone CH230-384D5, WORKING DRAF... 38 0.97 3
(AC113217) Rattus norvegicus clone CH230-323F14, WORKING DRA... 42 1.1 2
(AC159350) Bos taurus clone CH240-25P11, WORKING DRAFT SEQUE... 38 1.1 4
(AC124482) Mus musculus BAC clone RP24-120B3 from chromosome... 40 1.1 5
(AL137230) Human chromosome 14 DNA sequence BAC R-944C7 of l... 38 1.2 3
(CU571064) Zebrafish DNA sequence from clone CH211-280A23 in... 38 1.2 4
(AC068133) Homo sapiens chromosome 17 clone RP11-761L11, WOR... 38 1.2 5
(CU462873) Zebrafish DNA sequence from clone CH73-215F7 in l... 38 1.2 3
(CJ404884) Molgula tectiformis cDNA, gonad clone:mtgd021m09,... 38 1.2 2
(AC162806) Mus musculus BAC clone RP23-95E13 from chromosome... 38 1.3 4
(AC093356) Mus musculus chromosome 5, clone RP23-21B19, comp... 40 1.3 3
(AC111265) Rattus norvegicus clone CH230-40M18, *** SEQUENCI... 38 1.5 4
(AC158608) Mus musculus 10 BAC RP24-405N1 (Roswell Park Canc... 38 1.5 5
(AC090622) Homo sapiens chromosome 18 clone RP11-355I22 map ... 38 1.6 6
>(AU261549) Dictyostelium discoideum vegetative cDNA clone:VSA542,
3' end single read.
Length = 594
Score = 872 bits (440), Expect(2) = 0.0
Identities = 440/440 (100%)
Strand = Plus / Plus
Query: 118 tggaagatataaatagattattacaaattcgtaaaacagtattacaaatgttatcagatc 177
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 tggaagatataaatagattattacaaattcgtaaaacagtattacaaatgttatcagatc 63
Query: 178 gtgaatatattattacagcatatgagcaagaatatccaagagaatcatttgtatcacgtg 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 64 gtgaatatattattacagcatatgagcaagaatatccaagagaatcatttgtatcacgtg 123
Query: 238 aaaatttgacaatgtattgtgttaagaaggatgatccaaccgattcaatctatgttttct 297
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 124 aaaatttgacaatgtattgtgttaagaaggatgatccaaccgattcaatctatgttttct 183
Query: 298 ttccagatacaccaaaagtaggtgtaacacaaattaaaaagtatgtcgatattatgaaag 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttccagatacaccaaaagtaggtgtaacacaaattaaaaagtatgtcgatattatgaaag 243
Query: 358 atcgtcaagcaaatagagcaatcatcgttgttcaacaaaatattacaccatttgctaaac 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 atcgtcaagcaaatagagcaatcatcgttgttcaacaaaatattacaccatttgctaaac 303
Query: 418 aagctttagctgaattctctcaagaaaagaaaatcacattagaacaatttaatgaagctg 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 aagctttagctgaattctctcaagaaaagaaaatcacattagaacaatttaatgaagctg 363
Query: 478 aattattagttaacattactcatcatcaattagttccaaaacatatccttttaactaaag 537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aattattagttaacattactcatcatcaattagttccaaaacatatccttttaactaaag 423
Query: 538 aagagaaattagaactttta 557
||||||||||||||||||||
Sbjct: 424 aagagaaattagaactttta 443
Score = 309 bits (156), Expect(2) = 0.0
Identities = 156/156 (100%)
Strand = Plus / Plus
Query: 558 ttttaacaagatataaaatgaaggaaagtcagttaccacgtattcaaacaaacgatccag 617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ttttaacaagatataaaatgaaggaaagtcagttaccacgtattcaaacaaacgatccag 498
Query: 618 tcgcaagatattatggtctttcaagaggtcatgttgtaaaaattgttagaccttcagaaa 677
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 tcgcaagatattatggtctttcaagaggtcatgttgtaaaaattgttagaccttcagaaa 558
Query: 678 ctgctggtagatatatcacttatagattatgtgtat 713
||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctgctggtagatatatcacttatagattatgtgtat 594
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 892,643,439
Number of extensions: 92454266
Number of successful extensions: 35624670
Number of sequences better than 10.0: 372
Length of query: 792
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 768
Effective length of database: 97,308,875,965
Effective search space: 74733216741120
Effective search space used: 74733216741120
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.10 |
| Homology vs Protein |
Query= Contig-U14329-1 (Contig-U14329-1Q) /CSM_Contig/Contig-U14329-1Q.Seq.d
(792 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
(Q54EH2) RecName: Full=DNA-directed RNA polymerases I, II, and I... 271 3e-97
CP001330_150(CP001330|pid:none) Micromonas sp. RCC299 chromosome... 133 1e-50
EU284822_1(EU284822|pid:none) TSA: Elaeis guineensis EgEfMPOB000... 132 1e-48
AK059963_1(AK059963|pid:none) Oryza sativa Japonica Group cDNA c... 131 3e-48
BT074502_1(BT074502|pid:none) Osmerus mordax clone omor-eva-512-... 120 7e-47
(B0BNE2) RecName: Full=DNA-directed RNA polymerases I, II, and I... 121 3e-46
BT082660_1(BT082660|pid:none) Anoplopoma fimbria clone afim-evh-... 120 3e-46
BC060467_1(BC060467|pid:none) Xenopus laevis hypothetical protei... 120 3e-46
(P19388) RecName: Full=DNA-directed RNA polymerases I, II, and I... 120 8e-46
AB464042_1(AB464042|pid:none) Synthetic construct DNA, clone: pF... 120 8e-46
A32618(S52002;A32618;A39879) DNA-directed RNA polymerase (EC 2.7... 122 1e-45
(Q5R587) RecName: Full=DNA-directed RNA polymerases I, II, and I... 120 1e-45
BT080113_1(BT080113|pid:none) Esox lucius clone eluc-evq-527-235... 119 1e-45
BT047576_1(BT047576|pid:none) Salmo salar clone ssal-sjb-020-246... 118 2e-45
AB173578_1(AB173578|pid:none) Macaca fascicularis brain cDNA clo... 120 3e-45
(Q2T9T3) RecName: Full=DNA-directed RNA polymerases I, II, and I... 118 4e-45
(Q9N5K2) RecName: Full=DNA-directed RNA polymerases I, II, and I... 115 2e-44
EF633932_1(EF633932|pid:none) Ornithodoros parkeri clone OP-507 ... 119 4e-44
GQ169499_1(GQ169499|pid:none) Caenorhabditis brenneri clone T4NO... 114 5e-44
BT077229_1(BT077229|pid:none) Caligus rogercresseyi clone crog-e... 115 2e-43
BT080698_1(BT080698|pid:none) Caligus clemensi clone ccle-evs-50... 115 3e-43
AK343019_1(AK343019|pid:none) Acyrthosiphon pisum ACYPI000388 mR... 119 1e-42
AL662946_8(AL662946|pid:none) Oryza sativa genomic DNA, chromoso... 116 1e-42
EF678389_1(EF678389|pid:none) Picea sitchensis clone WS02919_F16... 103 7e-40
AY814353_1(AY814353|pid:none) Schistosoma japonicum SJCHGC05306 ... 103 2e-39
AC146561_25(AC146561|pid:none) Medicago truncatula clone mth2-12... 107 2e-39
CR940353_834(CR940353|pid:none) Theileria annulata strain Ankara... 86 9e-34
S59774_2(S59774|pid:none) riboflavin biosynthesis...STI1 stress-... 89 2e-33
AL844509_631(AL844509|pid:none) Plasmodium falciparum 3D7 chromo... 86 2e-33
(P20434) RecName: Full=DNA-directed RNA polymerases I, II, and I... 88 3e-33
CU928174_251(CU928174|pid:none) Zygosaccharomyces rouxii strain ... 85 4e-32
AE017341_763(AE017341|pid:none) Cryptococcus neoformans var. neo... 82 5e-32
(Q757H7) RecName: Full=DNA-directed RNA polymerases I, II, and I... 82 3e-31
AF165818_127(AF165818|pid:none) Guillardia theta nucleomorph chr... 89 2e-30
(Q6FQA6) RecName: Full=DNA-directed RNA polymerases I, II, and I... 79 3e-30
(Q09191) RecName: Full=DNA-directed RNA polymerases I, II, and I... 78 6e-30
(Q6CJ62) RecName: Full=DNA-directed RNA polymerases I, II, and I... 77 2e-29
CU928171_657(CU928171|pid:none) Kluyveromyces thermotolerans str... 77 2e-29
FM992688_1183(FM992688|pid:none) Candida dubliniensis CD36 chrom... 82 4e-29
(Q6BIJ0) RecName: Full=DNA-directed RNA polymerases I, II, and I... 80 6e-29
(Q9P4B9) RecName: Full=DNA-directed RNA polymerases I, II, and I... 77 2e-28
EF084579_1(EF084579|pid:none) Picea sitchensis clone WS02720_F09... 123 8e-27
CU638743_218(CU638743|pid:none) Podospora anserina genomic DNA c... 82 2e-25
(Q6CA26) RecName: Full=DNA-directed RNA polymerases I, II, and I... 82 3e-25
AK100492_1(AK100492|pid:none) Oryza sativa Japonica Group cDNA c... 116 9e-25
AM269982_23(AM269982|pid:none) Aspergillus niger contig An01c035... 77 2e-24
AM920431_1269(AM920431|pid:none) Penicillium chrysogenum Wiscons... 78 4e-24
BX649607_48(BX649607|pid:none) Aspergillus fumigatus BAC pilot p... 78 1e-23
BT050266_1(BT050266|pid:none) Salmo salar clone ssal-sjb-013-247... 108 3e-22
AC116314_4(AC116314|pid:none) Trypanosoma cruzi strain CL Brener... 65 3e-19
EU965150_1(EU965150|pid:none) Zea mays clone 284115 DNA-directed... 59 5e-19
AM502236_78(AM502236|pid:none) Leishmania infantum chromosome 18. 62 1e-17
AM494955_86(AM494955|pid:none) Leishmania braziliensis chromosom... 60 6e-17
AM167552_1(AM167552|pid:none) Trypanosoma brucei brucei mRNA for... 55 3e-16
AC122722_36(AC122722|pid:none) Medicago truncatula clone mth1-3f... 81 3e-16
EU878756_1(EU878756|pid:none) Oreochromis niloticus RNA polymera... 88 4e-16
AP008217_214(AP008217|pid:none) Oryza sativa (japonica cultivar-... 55 6e-16
AX885769_1(AX885769|pid:none) Sequence 1632 from Patent EP1033401. 84 4e-15
AK118958_1(AK118958|pid:none) Arabidopsis thaliana At3g57080 mRN... 54 9e-15
AY088640_1(AY088640|pid:none) Arabidopsis thaliana clone 8751 mR... 52 3e-14
S42643_1(S42643|pid:none) RNA polymerase II [human, mRNA, 144 nt]. 82 3e-14
AC153128_13(AC153128|pid:none) Medicago truncatula chromosome 7 ... 54 4e-14
DQ158857_84(DQ158857|pid:none) Bigelowiella natans nucleomorph c... 61 6e-14
AL138656_6(AL138656|pid:none) Arabidopsis thaliana DNA chromosom... 50 2e-13
AC005662_10(AC005662|pid:none) Arabidopsis thaliana chromosome 2... 53 3e-13
AC147774_17(AC147774|pid:none) Medicago truncatula chromosome 2 ... 50 3e-13
AC122722_32(AC122722|pid:none) Medicago truncatula clone mth1-3f... 76 1e-12
AF510643_1(AF510643|pid:none) Giardia intestinalis RNA polymeras... 60 6e-12
AF254577_1(AF254577|pid:none) Brassica napus RPB5d mRNA, complet... 49 3e-11
AC122722_35(AC122722|pid:none) Medicago truncatula clone mth1-3f... 70 8e-11
AM502236_79(AM502236|pid:none) Leishmania infantum chromosome 18. 48 3e-10
AM494955_87(AM494955|pid:none) Leishmania braziliensis chromosom... 45 4e-09
AF510644_1(AF510644|pid:none) Giardia intestinalis RNA polymeras... 54 2e-07
EU952997_1(EU952997|pid:none) Zea mays clone 1374123 DNA-directe... 58 4e-07
AM159083_1(AM159083|pid:none) Trypanosoma brucei brucei mRNA for... 43 8e-07
(O27122) RecName: Full=DNA-directed RNA polymerase subunit H; ... 52 9e-06
(Q58443) RecName: Full=DNA-directed RNA polymerase subunit H; ... 52 2e-05
BC037681_1(BC037681|pid:none) Mus musculus polymerase (RNA) II (... 51 5e-05
(Q12WS3) RecName: Full=DNA-directed RNA polymerase subunit H; ... 51 5e-05
CP001140_1373(CP001140|pid:none) Desulfurococcus kamchatkensis 1... 47 5e-05
CP000504_698(CP000504|pid:none) Pyrobaculum islandicum DSM 4184,... 50 6e-05
(Q464Y4) RecName: Full=DNA-directed RNA polymerase subunit H; ... 49 1e-04
(Q8PUQ8) RecName: Full=DNA-directed RNA polymerase subunit H; ... 49 2e-04
AE008384_2274(AE008384|pid:none) Methanosarcina mazei strain Goe... 49 2e-04
CP000660_2247(CP000660|pid:none) Pyrobaculum arsenaticum DSM 135... 49 2e-04
CP001014_1919(CP001014|pid:none) Thermoproteus neutrophilus V24S... 48 4e-04
(P31815) RecName: Full=DNA-directed RNA polymerase subunit H; ... 48 4e-04
(B6YT14) RecName: Full=DNA-directed RNA polymerase subunit H; ... 48 4e-04
(Q5JE31) RecName: Full=DNA-directed RNA polymerase subunit H; ... 47 5e-04
(A3DMP2) RecName: Full=DNA-directed RNA polymerase subunit H; ... 44 6e-04
(O74019) RecName: Full=DNA-directed RNA polymerase subunit H; ... 47 7e-04
(Q5UPX7) RecName: Full=DNA-directed RNA polymerase subunit 5; ... 47 7e-04
(Q8U0M2) RecName: Full=DNA-directed RNA polymerase subunit H; ... 47 7e-04
CP000561_2065(CP000561|pid:none) Pyrobaculum calidifontis JCM 11... 47 0.001
(A2BN32) RecName: Full=DNA-directed RNA polymerase subunit H; ... 44 0.001
S04715(S04715) DNA-directed RNA polymerase (EC 2.7.7.6) chain H ... 42 0.002
BA000023_304(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ... 43 0.003
(P61519) RecName: Full=DNA-directed RNA polymerase subunit H; ... 44 0.005
AM180088_2480(AM180088|pid:none) Haloquadratum walsbyi DSM 16790... 44 0.008
CP000254_46(CP000254|pid:none) Methanospirillum hungatei JF-1, c... 44 0.008
(A0B555) RecName: Full=DNA-directed RNA polymerase subunit H; ... 44 0.008
CP000816_650(CP000816|pid:none) Ignicoccus hospitalis KIN4/I, co... 43 0.010
CP000780_1926(CP000780|pid:none) Candidatus Methanoregula boonei... 43 0.013
CP000866_342(CP000866|pid:none) Nitrosopumilus maritimus SCM1, c... 43 0.013
(A6VGU6) RecName: Full=DNA-directed RNA polymerase subunit H; ... 41 0.039
(A4FWF9) RecName: Full=DNA-directed RNA polymerase subunit H; ... 41 0.051
(Q980Q9) RecName: Full=DNA-directed RNA polymerase subunit H; ... 41 0.051
CP000867_1300(CP000867|pid:none) Methanococcus maripaludis C6, c... 41 0.051
CP001399_1860(CP001399|pid:none) Sulfolobus islandicus L.S.2.15,... 41 0.051
(Q8TXI5) RecName: Full=DNA-directed RNA polymerase subunit H; ... 40 0.066
(Q2NEK1) RecName: Full=DNA-directed RNA polymerase subunit H; ... 40 0.066
CP001365_108(CP001365|pid:none) Halorubrum lacusprofundi ATCC 49... 37 0.097
CP000976_495(CP000976|pid:none) Borrelia duttonii Ly, complete g... 40 0.11
EU016631_10(EU016631|pid:none) Uncultured Group I marine crenarc... 39 0.25
CR936257_54(CR936257|pid:none) Natronomonas pharaonis DSM 2160 c... 38 0.33
EU016588_17(EU016588|pid:none) Uncultured Group I marine crenarc... 38 0.33
AY596297_2156(AY596297|pid:none) Haloarcula marismortui ATCC 430... 37 0.35
(B0R8D7) RecName: Full=DNA-directed RNA polymerase subunit H; ... 34 0.98
AE017261_260(AE017261|pid:none) Picrophilus torridus DSM 9790, c... 35 2.1
BA000011_1209(BA000011|pid:none) Thermoplasma volcanium GSS1 DNA... 35 2.8
CP000362_731(CP000362|pid:none) Roseobacter denitrificans OCh 11... 34 4.7
AL445064_65(AL445064|pid:none) Thermoplasma acidophilum complete... 34 4.7
CP000782_223(CP000782|pid:none) Xanthobacter autotrophicus Py2 p... 34 6.2
AE017282_2377(AE017282|pid:none) Methylococcus capsulatus str. B... 33 8.1
>(Q54EH2) RecName: Full=DNA-directed RNA polymerases I, II, and III
subunit rpabc1; Short=RNA polymerases I, II,
and III subunit ABC1; AltName: Full=RPB5;
Length = 197
Score = 271 bits (692), Expect(2) = 3e-97
Identities = 136/136 (100%), Positives = 136/136 (100%)
Frame = +3
Query: 117 MEDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVSRENLTMYCVKKDDPTDSIYVF 296
MEDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVSRENLTMYCVKKDDPTDSIYVF
Sbjct: 1 MEDINRLLQIRKTVLQMLSDREYIITAYEQEYPRESFVSRENLTMYCVKKDDPTDSIYVF 60
Query: 297 FPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEA 476
FPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEA
Sbjct: 61 FPDTPKVGVTQIKKYVDIMKDRQANRAIIVVQQNITPFAKQALAEFSQEKKITLEQFNEA 120
Query: 477 ELLVNITHHQLVPKHI 524
ELLVNITHHQLVPKHI
Sbjct: 121 ELLVNITHHQLVPKHI 136
Score = 108 bits (270), Expect(2) = 3e-97
Identities = 52/58 (89%), Positives = 55/58 (94%)
Frame = +2
Query: 539 REIRTFILTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 712
+E + +LTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV
Sbjct: 140 KEEKLELLTRYKMKESQLPRIQTNDPVARYYGLSRGHVVKIVRPSETAGRYITYRLCV 197
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 818,458,830
Number of extensions: 13231954
Number of successful extensions: 30919
Number of sequences better than 10.0: 124
Number of HSP's gapped: 30823
Number of HSP's successfully gapped: 202
Length of query: 264
Length of database: 1,051,180,864
Length adjustment: 126
Effective length of query: 138
Effective length of database: 643,374,430
Effective search space: 88785671340
Effective search space used: 88785671340
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)
|
| PSORT |
|
| VS (DIR, S) |
2 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
1 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |