Contig-U14318-1
Contig ID Contig-U14318-1
Contig update 2002.12.18
Contig sequence
>Contig-U14318-1 (Contig-U14318-1Q) /CSM_Contig/Contig-U14318-1Q.Seq.d
NNNNNNNNNNTCANNTGGGGNTGCNGNTGGGGNTGCTGNTGGNGGGGCNA
ATGCNCNTGGGGTTTTTANTTTTGNTGGNAAAAAANGNTNNNNNTNNTGG
AAAACNANNCAAGGNGNTNCAAAGGNCNCATNAAAAGCCNANCCCCTTTA
AGAAAACNAN

Gap no gap
Contig length 160
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U14318
List of clone(s)

est1=CHG510Z,1,151
Translated Amino Acid sequence
XXXXXWGCXWGCXWXGXCXWGFXFXWXKXXXXXENXXRXXKGXXKSXXPLRKX


Translated Amino Acid sequence (All Frames)
Frame A:
XXXXXWGCXWGCXWXGXCXWGFXFXWXKXXXXXENXXRXXKGXXKSXXPLRKX


Frame B:
xxxsxgxaxgxaxgganaxgvfxfxgkkxxxxwktxqgxxkxxxkaxpl*enx


Frame C:
xxxxxgxxxgxlxxgxmxxgflxlxxkxxxxxgkxxkxxqrxhxkpxpfkkt


own update 2004. 6.10
Homology vs CSM-cDNA
Query= Contig-U14318-1 (Contig-U14318-1Q)
/CSM_Contig/Contig-U14318-1Q.Seq.d
(160 letters)

Database: CSM
6905 sequences; 5,674,871 total letters


Score E
Sequences producing significant alignments: (bits) Value

Contig-U14318-1 (Contig-U14318-1Q) /CSM_Contig/Conti... 66 1e-11
Contig-U11143-1 (Contig-U11143-1Q) /CSM_Contig/Conti... 40 7e-04
Contig-U14013-1 (Contig-U14013-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U12652-1 (Contig-U12652-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U12623-1 (Contig-U12623-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U11508-1 (Contig-U11508-1Q) /CSM_Contig/Conti... 38 0.003
Contig-U14373-1 (Contig-U14373-1Q) /CSM_Contig/Conti... 32 0.16
Contig-U12766-1 (Contig-U12766-1Q) /CSM_Contig/Conti... 32 0.16

>Contig-U14318-1 (Contig-U14318-1Q) /CSM_Contig/Contig-U14318-1Q.Seq.d
Length = 160

Score = 65.9 bits (33), Expect = 1e-11
Identities = 108/108 (100%)
Strand = Plus / Plus


Query: 50 aatgcncntggggtttttanttttgntggnaaaaaangntnnnnntnntggaaaacnann 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 50 aatgcncntggggtttttanttttgntggnaaaaaangntnnnnntnntggaaaacnann 109


Query: 110 caaggngntncaaaggncncatnaaaagccnancccctttaagaaaac 157
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 caaggngntncaaaggncncatnaaaagccnancccctttaagaaaac 157


>Contig-U11143-1 (Contig-U11143-1Q) /CSM_Contig/Contig-U11143-1Q.Seq.d
Length = 378

Score = 40.1 bits (20), Expect = 7e-04
Identities = 86/98 (87%)
Strand = Plus / Plus


Query: 58 tggggtttttanttttgntggnaaaaaangntnnnnntnntggaaaacnanncaaggngn 117
|||||| |||||||||| |||||||||| ||| | || ||||||| | |||||||||||
Sbjct: 278 tggggtntttanttttggtggnaaaaaaggntangantantggaaancaanncaaggngn 337


Query: 118 tncaaaggncncatnaaaagccnancccctttaagaaa 155
|||||||| ||||| |||||||||||||||||| ||||
Sbjct: 338 tncaaaggccncatcaaaagccnancccctttangaaa 375


>Contig-U14013-1 (Contig-U14013-1Q) /CSM_Contig/Contig-U14013-1Q.Seq.d
Length = 157

Score = 38.2 bits (19), Expect = 0.003
Identities = 28/28 (100%)
Strand = Plus / Plus


Query: 58 tggggtttttanttttgntggnaaaaaa 85
||||||||||||||||||||||||||||
Sbjct: 109 tggggtttttanttttgntggnaaaaaa 136


Database: CSM
Posted date: Jun 9, 2004 7:35 PM
Number of letters in database: 5,674,871
Number of sequences in database: 6905

Lambda K H
1.37 0.711 1.31

Gapped
Lambda K H
1.37 0.711 1.31


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 70
Number of Sequences: 6905
Number of extensions: 70
Number of successful extensions: 17
Number of sequences better than 10.0: 9
length of query: 160
length of database: 5,674,871
effective HSP length: 15
effective length of query: 145
effective length of database: 5,571,296
effective search space: 807837920
effective search space used: 807837920
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.20
Homology vs DNA
Query= Contig-U14318-1 (Contig-U14318-1Q) /CSM_Contig/Contig-U14318-1Q.Seq.d
(160 letters)

Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

Score E
Sequences producing significant alignments: (bits) Value N

(BJ379484) Dictyostelium discoideum cDNA clone:ddc35c03, 3' ... 46 0.34 1

>(BJ379484) Dictyostelium discoideum cDNA clone:ddc35c03, 3' end,
single read.
Length = 151

Score = 46.1 bits (23), Expect = 0.34
Identities = 38/38 (100%)
Strand = Plus / Minus


Query: 120 caaaggncncatnaaaagccnancccctttaagaaaac 157
||||||||||||||||||||||||||||||||||||||
Sbjct: 42 caaaggncncatnaaaagccnancccctttaagaaaac 5

Lambda K H
1.37 0.711 1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 13,159,417
Number of extensions: 713666
Number of successful extensions: 108388
Number of sequences better than 10.0: 1
Length of query: 160
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 138
Effective length of database: 93,199,600,587
Effective search space: 12861544881006
Effective search space used: 12861544881006
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)

protein update 2009. 7.10
Homology vs Protein
Query= Contig-U14318-1 (Contig-U14318-1Q) /CSM_Contig/Contig-U14318-1Q.Seq.d
(160 letters)

Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

***** No hits found ******

Lambda K H
0.318 0.134 0.401

Gapped
Lambda K H
0.267 0.0410 0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 80,939,699
Number of extensions: 4638175
Number of successful extensions: 470
Number of sequences better than 10.0: 0
Number of HSP's gapped: 463
Number of HSP's successfully gapped: 0
Length of query: 53
Length of database: 1,051,180,864
Length adjustment: 26
Effective length of query: 27
Effective length of database: 967,030,330
Effective search space: 26109818910
Effective search space used: 26109818910
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 25 (14.2 bits)

PSORT

psg: 0.88 gvh: 0.55 alm: 0.55 top: 0.60 tms: 0.00 mit: 0.15 mip: 0.00
nuc: 0.00 erl: 0.00 erm: 0.20 pox: 0.00 px2: 0.00 vac: 0.00 rnp: 0.00
act: 0.00 caa: 0.00 yqr: 0.00 tyr: 0.00 leu: 0.00 gpi: 0.00 myr: 0.00
dna: 0.00 rib: 0.00 bac: 0.00 m1a: 0.00 m1b: 0.00 m2 : 0.00 mNt: 0.00
m3a: 0.00 m3b: 0.00 m_ : 1.00

44.0 %: cytoplasmic
28.0 %: nuclear
8.0 %: cytoskeletal
8.0 %: mitochondrial
8.0 %: peroxisomal
4.0 %: endoplasmic reticulum

>> prediction for Contig-U14318-1 is cyt

VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0