| Contig-U14309-1 |
| Contig ID |
Contig-U14309-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
1045 |
| Chromosome number (1..6, M) |
2 |
| Chromosome length |
8467578 |
| Start point |
1805048 |
| End point |
1806093 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
14 |
| Number of EST |
14 |
| Link to clone list |
U14309 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.20 |
| Homology vs DNA |
Query= Contig-U14309-1 (Contig-U14309-1Q) /CSM_Contig/Contig-U14309-1Q.Seq.d
(1045 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(AC115680) Dictyostelium discoideum chromosome 2 map 4915084... 628 0.0 11
(C93799) Dictyostelium discoideum slug cDNA, clone SSL731. 605 0.0 3
(AU039514) Dictyostelium discoideum slug cDNA, clone SLA769. 402 0.0 10
(BJ385748) Dictyostelium discoideum cDNA clone:ddc56c05, 3' ... 392 0.0 11
(AU060263) Dictyostelium discoideum slug cDNA, clone SLA769. 628 0.0 10
(C92280) Dictyostelium discoideum slug cDNA, clone SSD335. 402 0.0 10
(AU037677) Dictyostelium discoideum slug cDNA, clone SSE164. 402 0.0 9
(C90707) Dictyostelium discoideum slug cDNA, clone SSJ647. 379 0.0 10
(BJ379403) Dictyostelium discoideum cDNA clone:ddc34c19, 3' ... 172 e-163 11
(AU061267) Dictyostelium discoideum slug cDNA, clone SLD646. 545 e-162 2
(AU038212) Dictyostelium discoideum slug cDNA, clone SSH423. 402 e-162 6
(BJ400901) Dictyostelium discoideum cDNA clone:dds15g09, 3' ... 256 e-157 10
(AU033906) Dictyostelium discoideum slug cDNA, clone SLB594. 402 e-136 6
(C90002) Dictyostelium discoideum slug cDNA, clone SSG877. 402 e-118 4
(C92279) Dictyostelium discoideum slug cDNA, clone SSD334. 396 e-116 4
(AU052630) Dictyostelium discoideum slug cDNA, clone SLD637. 402 e-107 1
(AU073390) Dictyostelium discoideum slug cDNA, clone SSG877. 371 e-104 2
(AC214550) MACACA MULATTA BAC clone CH250-80H12 from chromos... 48 0.67 1
(AM466340) Vitis vinifera contig VV78X125813.5, whole genome... 48 0.67 1
(AF181898) Homo sapiens chromosome 8 clone GS1-402E12 map p2... 48 0.67 1
(AC005010) Homo sapiens BAC clone GS1-110L19 from 8, complet... 48 0.67 1
(AC223335) Bos taurus clone CH240-421M10, WORKING DRAFT SEQU... 36 2.1 6
(AC110062) Homo sapiens chromosome 18, clone CTD-2125N24, co... 44 2.3 4
(BV486137) S215P60634FH3.T0 Clara Pan troglodytes troglodyte... 46 2.7 1
(AC192763) Pan troglodytes BAC clone CH251-587L14 from chrom... 46 2.7 1
(AM482608) Vitis vinifera contig VV78X163064.2, whole genome... 46 2.7 1
(AM455510) Vitis vinifera contig VV78X165644.5, whole genome... 46 2.7 1
(AC157423) Bos taurus clone CH240-70D17, WORKING DRAFT SEQUE... 46 2.7 1
(CU481234) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 46 2.7 1
(AC162983) Bos taurus clone CH240-123N19, WORKING DRAFT SEQU... 46 2.7 1
(EK085540) 1092961144409 Global-Ocean-Sampling_GS-31-01-01-1... 46 2.7 1
(CU847472) A BAC library has been constructed from PN40024 g... 46 2.7 1
(CZ962585) 160465 Tomato MboI BAC Library Solanum lycopersic... 40 2.7 2
(AC163277) Mus musculus BAC clone RP24-471O20 from chromosom... 32 5.0 2
(AC164167) Mus musculus chromosome 18 clone CH25-17L15, WORK... 32 5.2 2
>(AC115680) Dictyostelium discoideum chromosome 2 map 4915084-5005461
strain AX4, complete sequence.
Length = 90373
Score = 628 bits (317), Expect(11) = 0.0
Identities = 317/317 (100%)
Strand = Plus / Plus
Query: 63 aacaatagtaaatgttaacaatagtattgatttatgtttatcaaatccaaagaaagcatt 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62455 aacaatagtaaatgttaacaatagtattgatttatgtttatcaaatccaaagaaagcatt 62514
Query: 123 agttaatcaagcatgcaaatattcaacagattgtgaatatccattattttgtggtagtgg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62515 agttaatcaagcatgcaaatattcaacagattgtgaatatccattattttgtggtagtgg 62574
Query: 183 taatgggtatggtaaaaatgcgacatgttctaaaaacattgaaactggtggtagttgtga 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62575 taatgggtatggtaaaaatgcgacatgttctaaaaacattgaaactggtggtagttgtga 62634
Query: 243 atcaaataatcaatgcacaccgtgtaatgtttgttttaatgcaaaatgtaaagtcaagct 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62635 atcaaataatcaatgcacaccgtgtaatgtttgttttaatgcaaaatgtaaagtcaagct 62694
Query: 303 ttatcttggtgatgcttgcgatgaaaataagagctattgttcaagttcagtttgtataaa 362
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62695 ttatcttggtgatgcttgcgatgaaaataagagctattgttcaagttcagtttgtataaa 62754
Query: 363 aggtaaatgctcgattc 379
|||||||||||||||||
Sbjct: 62755 aggtaaatgctcgattc 62771
Score = 402 bits (203), Expect(11) = 0.0
Identities = 209/211 (99%)
Strand = Plus / Plus
Query: 763 cagtgggtgctcttaaaaatggtaaatgtccatcactactctcctctgtctcctcttgta 822
||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||
Sbjct: 63120 cagtgggtgctcttaaaaatgataaatgtccatcactactctcctctttctcctcttgta 63179
Query: 823 tgactcgtgaacgttgtactgagaatactccaaccggttgcccaaaatgttatccaattt 882
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63180 tgactcgtgaacgttgtactgagaatactccaaccggttgcccaaaatgttatccaattt 63239
Query: 883 tcatgtgttatcaatattcatgtttctatatgaaccaattcattagatcaacccaaaatt 942
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 63240 tcatgtgttatcaatattcatgtttctatatgaaccaattcattagatcaacccaaaatt 63299
Query: 943 attataaatcattttgttcttaagtagtact 973
|||||||||||||||||||||||||||||||
Sbjct: 63300 attataaatcattttgttcttaagtagtact 63330
Score = 147 bits (74), Expect(11) = 0.0
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 465 agaaggttcatcatgtgataaagactcaagttgttcattaaccaatgcttgtgtcggtgg 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62851 agaaggttcatcatgtgataaagactcaagttgttcattaaccaatgcttgtgtcggtgg 62910
Query: 525 taaatgtgtcacaa 538
||||||||||||||
Sbjct: 62911 taaatgtgtcacaa 62924
Score = 63.9 bits (32), Expect(11) = 0.0
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 546 tcaaaaaccattaggtgctgtttgtaactcgt 577
||||||||||||||||||||||||||||||||
Sbjct: 62929 tcaaaaaccattaggtgctgtttgtaactcgt 62960
Score = 54.0 bits (27), Expect(11) = 0.0
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 429 actgcaaatctggtaaatgcgtcccattaga 459
|||||||||||||||||||||| ||||||||
Sbjct: 62817 actgcaaatctggtaaatgcgttccattaga 62847
Score = 42.1 bits (21), Expect(11) = 0.0
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 380 caaggtgatgtttgcactgcc 400
|||||||||||||||||||||
Sbjct: 62771 caaggtgatgtttgcactgcc 62791
Score = 40.1 bits (20), Expect(11) = 0.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 25 tgaaaattaaattaatttta 44
||||||||||||||||||||
Sbjct: 62418 tgaaaattaaattaatttta 62437
Score = 40.1 bits (20), Expect(11) = 0.0
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 631 aagtgttcagtttataatca 650
||||||||||||||||||||
Sbjct: 63008 aagtgttcagtttataatca 63027
Score = 34.2 bits (17), Expect(11) = 0.0
Identities = 17/17 (100%)
Strand = Plus / Plus
Query: 590 tcaagtattctctggcc 606
|||||||||||||||||
Sbjct: 62971 tcaagtattctctggcc 62987
Score = 32.2 bits (16), Expect(11) = 0.0
Identities = 19/20 (95%)
Strand = Plus / Plus
Query: 400 ccaataatcaatgtgaattc 419
|||||||||||||| |||||
Sbjct: 62790 ccaataatcaatgtaaattc 62809
Score = 32.2 bits (16), Expect(11) = 0.0
Identities = 16/16 (100%)
Strand = Plus / Plus
Query: 606 ccacgtttgtggtgcc 621
||||||||||||||||
Sbjct: 62986 ccacgtttgtggtgcc 63001
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,044,881,092
Number of extensions: 59698055
Number of successful extensions: 4879831
Number of sequences better than 10.0: 35
Length of query: 1045
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1021
Effective length of database: 97,308,875,965
Effective search space: 99352362360265
Effective search space used: 99352362360265
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
|
| protein update |
2009. 7.10 |
| Homology vs Protein |
Query= Contig-U14309-1 (Contig-U14309-1Q) /CSM_Contig/Contig-U14309-1Q.Seq.d
(1045 letters)
Database: nrp_B
3,236,559 sequences; 1,051,180,864 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromoso... 298 e-117
AC115680_32(AC115680|pid:none) Dictyostelium discoideum chromoso... 72 2e-21
U28735_10(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, ... 45 0.003
U28735_9(U28735|pid:none) Caenorhabditis elegans cosmid F48E3, c... 45 0.003
CP000113_1974(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 45 0.004
EU072820_1(EU072820|pid:none) Drosophila americana isolate IR04.... 43 0.016
EU072824_1(EU072824|pid:none) Drosophila americana isolate IR04.... 43 0.016
AC024830_9(AC024830|pid:none) Caenorhabditis elegans cosmid Y55F... 43 0.021
AM746676_2300(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 42 0.047
AF007248_1(AF007248|pid:none) Mus musculus mutant fibrillin-1 (F... 42 0.047
U19972_1(U19972|pid:none) Mus musculus fibrillin-1 mRNA, partial... 42 0.047
AF135059_1(AF135059|pid:none) Rattus norvegicus fibrillin-1 mRNA... 42 0.047
AL844547_6(AL844547|pid:none) Mouse DNA sequence from clone RP23... 42 0.047
AB159785_1(AB159785|pid:none) Aspergillus oryzae csnC gene for c... 41 0.061
(P98157) RecName: Full=Low-density lipoprotein receptor-related ... 41 0.080
A27020(A27020)DIF-induced prestalk pDd63 protein precursor - sli... 41 0.080
AF300614_1(AF300614|pid:none) Gallus gallus fibrillin-2 (fbn2) m... 41 0.080
AF300615_1(AF300615|pid:none) Gallus gallus fibrillin-2B (fbn2) ... 41 0.080
(Q52085) RecName: Full=Cell-cell adhesion glycoprotein 64; ... 40 0.10
(Q54C32) RecName: Full=Protein psiQ; Flags: Precursor; 40 0.10
AJ133651_1(AJ133651|pid:none) Trichoderma harzianum cmp1 gene. 40 0.10
(P41951) RecName: Full=Prion-like-(Q/N-rich) domain-bearing prot... 40 0.10
AJ291489_1(AJ291489|pid:none) Paracentrotus lividus mRNA for fib... 40 0.10
(Q25464) RecName: Full=Adhesive plaque matrix protein 2; AltName... 40 0.14
CT025750_1(CT025750|pid:none) Zebrafish DNA sequence from clone ... 40 0.14
AP007166_484(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 40 0.18
(Q54G85) RecName: Full=Protein psiJ; Flags: Precursor; 40 0.18
(P18168) RecName: Full=Serrate protein; AltName: Full=Protein be... 39 0.23
M33753_1(M33753|pid:none) D.melanogaster crumbs protein mRNA, co... 39 0.23
(P35555) RecName: Full=Fibrillin-1; Flags: Precursor; &L13923_1... 39 0.23
X63556_1(X63556|pid:none) H.sapiens mRNA for fibrillin. 39 0.23
(P10040) RecName: Full=Protein crumbs; AltName: Full=95F; Flags:... 39 0.23
I50719(I50719) C-Delta-1 - chicken &U26590_1(U26590|pid:none) 39 0.23
AY128478_1(AY128478|pid:none) Drosophila melanogaster RE42104 fu... 39 0.23
AB177802_1(AB177802|pid:none) Homo sapiens FBN1 gene for fibrill... 39 0.23
AE014297_4255(AE014297|pid:none) Drosophila melanogaster chromos... 39 0.23
EU152252_1(EU152252|pid:none) Hydra vulgaris notch mRNA, complet... 39 0.30
BC162451_1(BC162451|pid:none) Danio rerio crumbs homolog 2, mRNA... 39 0.30
(Q61554) RecName: Full=Fibrillin-1; Flags: Precursor; &A55624(A... 39 0.30
AC115607_13(AC115607|pid:none) Dictyostelium discoideum chromoso... 39 0.40
S28291(S28291)hypothetical protein ZC84.1 - Caenorhabditis elegans 39 0.40
AY845260_1(AY845260|pid:none) Mytilus edulis clone 2 foot protei... 39 0.40
AC116984_103(AC116984|pid:none) Dictyostelium discoideum chromos... 39 0.40
AY123118_1(AY123118|pid:none) Griffithsia japonica growth factor... 38 0.52
FJ039902_1(FJ039902|pid:none) Triticum aestivum DEP1 (DEP1) mRNA... 38 0.52
AE014186_433(AE014186|pid:none) Plasmodium falciparum 3D7 chromo... 38 0.52
(Q94494) RecName: Full=Protein psiH; Flags: Precursor; &U67940_... 38 0.52
(Q61555) RecName: Full=Fibrillin-2; Flags: Precursor; &A57278(A... 38 0.67
AM746676_9366(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 38 0.67
CP000113_4450(CP000113|pid:none) Myxococcus xanthus DK 1622, com... 37 0.88
(O08999) RecName: Full=Latent-transforming growth factor beta-bi... 37 0.88
BC080070_1(BC080070|pid:none) Xenopus laevis delta/notch-like EG... 37 0.88
AL034557_3(AL034557|pid:none) Plasmodium falciparum MAL4P1. &AL... 37 0.88
(Q9W6F8) RecName: Full=Wnt inhibitory factor 1; Short=W... 37 0.88
X56811_1(X56811|pid:none) D.melanogaster Serrate mRNA for EGF-li... 37 1.1
AB077987_1(AB077987|pid:none) Halocynthia roretzi mRNA for HrDel... 37 1.1
FN322663_1(FN322663|pid:none) Schistosoma japonicum isolate Anhu... 37 1.1
CP001131_2828(CP001131|pid:none) Anaeromyxobacter sp. K, complet... 37 1.1
FN322670_1(FN322670|pid:none) Schistosoma japonicum isolate Anhu... 37 1.1
CU459119_1(CU459119|pid:none) Zebrafish DNA sequence from clone ... 37 1.1
BC079887_1(BC079887|pid:none) Mus musculus FAT tumor suppressor ... 37 1.1
AM746676_7294(AM746676|pid:none) Sorangium cellulosum 'So ce 56'... 37 1.1
S16148(S16148;S16878;A36666)gene serrate protein precursor - fru... 37 1.1
BC154909_1(BC154909|pid:none) Xenopus tropicalis WNT inhibitory ... 37 1.1
BC135592_1(BC135592|pid:none) Xenopus tropicalis delta-like 1, m... 37 1.1
(Q2PZL6) RecName: Full=Protocadherin Fat 4; AltName: Full=FAT tu... 37 1.1
D88550(D88550)protein ZC84.6 [imported] - Caenorhabditis elegans 37 1.5
CP000769_2860(CP000769|pid:none) Anaeromyxobacter sp. Fw109-5, c... 37 1.5
U03272_1(U03272|pid:none) Human fibrillin-2 mRNA, complete cds. 37 1.5
Z19157_4(Z19157|pid:none) Caenorhabditis elegans Cosmid ZC84, co... 37 1.5
A54105(A54105;S17063;S31101)fibrillin-2 precursor - human 37 1.5
(Q86HT1) RecName: Full=Protein psiL; Flags: Precursor; &AC11695... 36 2.0
FN322668_1(FN322668|pid:none) Schistosoma japonicum isolate Anhu... 36 2.0
A35844(A35844)Xotch protein - African clawed frog 36 2.0
(P21783) RecName: Full=Neurogenic locus notch protein homolog; ... 36 2.0
FN322651_1(FN322651|pid:none) Schistosoma japonicum isolate Anhu... 36 2.0
(Q9D5Z7) RecName: Full=Keratin-associated protein 5-2; &AK01478... 36 2.0
T28802(T28802) hypothetical protein C53B7.3 - Caenorhabditis ele... 36 2.0
Y12539_1(Y12539|pid:none) Branchiostoma floridae mRNA for putati... 36 2.6
AJ409106_2(AJ409106|pid:none) Entamoeba histolytica vsp gene for... 36 2.6
(Q55GV9) RecName: Full=Calponin homology and LIM domain-containi... 36 2.6
AY995116_1(AY995116|pid:none) Strigamia maritima notch mRNA, par... 36 2.6
(Q8N2E2) RecName: Full=Von Willebrand factor D and EGF domain-co... 36 2.6
AX367152_1(AX367152|pid:none) Sequence 1 from Patent WO0204599. 36 2.6
AE014134_2528(AE014134|pid:none) Drosophila melanogaster chromos... 36 2.6
AJ310621_1(AJ310621|pid:none) Plasmodium falciparum partial cg2 ... 35 3.3
AY123122_1(AY123122|pid:none) Griffithsia japonica notch-like pr... 35 3.3
AL158158_5(AL158158|pid:none) Human DNA sequence from clone RP11... 35 3.3
AK027870_1(AK027870|pid:none) Homo sapiens cDNA FLJ14964 fis, cl... 35 3.3
BC170476_1(BC170476|pid:none) Xenopus laevis slit homolog 2 (Dro... 35 3.3
AY046070_1(AY046070|pid:none) Xenopus laevis Slit mRNA, complete... 35 3.3
AF135060_1(AF135060|pid:none) Rattus norvegicus fibrillin-2 mRNA... 35 3.3
FN322659_1(FN322659|pid:none) Schistosoma japonicum isolate Anhu... 35 4.4
Z32679_6(Z32679|pid:none) Caenorhabditis elegans Cosmid C05B5, c... 35 4.4
(O70244) RecName: Full=Cubilin; AltName: Full=Intrinsic factor-c... 35 4.4
AF308602_1(AF308602|pid:none) Homo sapiens NOTCH 1 (N1) mRNA, co... 35 4.4
DQ812528_1(DQ812528|pid:none) Spironucleus barkhanus isolate Sp1... 35 4.4
FN322655_1(FN322655|pid:none) Schistosoma japonicum isolate Anhu... 35 4.4
S18188(S18188)notch protein homolog - rat 35 4.4
FN322652_1(FN322652|pid:none) Schistosoma japonicum isolate Anhu... 35 4.4
U42830_5(U42830|pid:none) Caenorhabditis elegans cosmid C53B7, c... 35 4.4
AB100603_1(AB100603|pid:none) Mus musculus Notch1 gene for trans... 35 4.4
AB201466_1(AB201466|pid:none) Holotrichia diomphalia EGF-like mR... 35 4.4
E88571(E88571)protein C05B5.5 [imported] - Caenorhabditis elegans 35 4.4
S43572(S43572)C05B5.5 protein (clone C05B5) - Caenorhabditis ele... 35 4.4
AB100603_2(AB100603|pid:none) Mus musculus Notch1 gene for trans... 35 4.4
H88380(H88380)protein T22F7.3 [imported] - Caenorhabditis elegans 35 4.4
(Q01705) RecName: Full=Neurogenic locus notch homolog protein 1;... 35 4.4
(O35806) RecName: Full=Latent-transforming growth factor beta-bi... 35 4.4
AF508809_1(AF508809|pid:none) Mus musculus notch 1 protein mRNA,... 35 4.4
BC135484_1(BC135484|pid:none) Xenopus tropicalis delta/notch-lik... 35 5.7
L42229_1(L42229|pid:none) Xenopus laevis X-Delta-1 gene, complet... 35 5.7
BC124250_1(BC124250|pid:none) Danio rerio zgc:153112, mRNA (cDNA... 35 5.7
AF214523_1(AF214523|pid:none) Drosophila melanogaster SP460 mRNA... 35 5.7
AB210365_1(AB210365|pid:none) Ciona intestinalis mRNA for delta ... 35 5.7
BC161016_1(BC161016|pid:none) Xenopus tropicalis delta/notch-lik... 35 5.7
S82451_1(S82451|pid:none) latent transforming growth factor-beta... 34 7.5
(O00548) RecName: Full=Delta-like protein 1; AltName: Full=Droso... 34 7.5
DQ917572_1(DQ917572|pid:none) Parhyale hawaiensis notch protein ... 34 7.5
BC145488_1(BC145488|pid:none) Mus musculus slit homolog 2 (Droso... 34 7.5
AB043893_1(AB043893|pid:none) Mus musculus dll-4 mRNA for Delta-... 34 7.5
AC008273_1(AC008273|pid:none) Homo sapiens BAC clone RP11-150O2 ... 34 7.5
AB095017_1(AB095017|pid:none) Cynops pyrrhogaster Delta-1 mRNA f... 34 7.5
AF196571_1(AF196571|pid:none) Homo sapiens Delta-like-1 protein ... 34 7.5
AM270338_18(AM270338|pid:none) Aspergillus niger contig An15c011... 34 7.5
AF074960_1(AF074960|pid:none) Mus musculus neurogenic extracellu... 34 7.5
BC059267_1(BC059267|pid:none) Mus musculus slit homolog 2 (Droso... 34 7.5
(Q9R1B9) RecName: Full=Slit homolog 2 protein; Short=Sl... 34 7.5
AM920429_155(AM920429|pid:none) Penicillium chrysogenum Wisconsi... 34 7.5
AF003522_1(AF003522|pid:none) Homo sapiens Delta mRNA, complete ... 34 7.5
AK220505_1(AK220505|pid:none) Mus musculus mRNA for mKIAA4141 pr... 34 7.5
U20217_1(U20217|pid:none) Mus musculus fibrillin-2 mRNA, partial... 34 7.5
EF599326_1(EF599326|pid:none) Austrelaps superbus PLA-20 precurs... 34 7.5
(Q9JI71) RecName: Full=Delta-like protein 4; AltName: Full=Droso... 34 7.5
BC078659_1(BC078659|pid:none) Homo sapiens latent transforming g... 34 7.5
AP007166_483(AP007166|pid:none) Aspergillus oryzae RIB40 genomic... 34 7.5
(P97607) RecName: Full=Protein jagged-2; Short=Jagged2;... 34 7.5
BC035009_1(BC035009|pid:none) Homo sapiens delta/notch-like EGF ... 34 7.5
AB209865_1(AB209865|pid:none) Homo sapiens mRNA for latent trans... 34 7.5
AK289553_1(AK289553|pid:none) Homo sapiens cDNA FLJ76207 complet... 34 7.5
DQ917549_1(DQ917549|pid:none) Rhinoplocephalus nigrescens PLA2-1... 34 7.5
AJ310620_1(AJ310620|pid:none) Plasmodium falciparum partial cg2 ... 34 7.5
EU978950_1(EU978950|pid:none) Larimichthys crocea myeloid differ... 34 9.7
AF055585_1(AF055585|pid:none) Homo sapiens neurogenic extracellu... 34 9.7
AF275870_1(AF275870|pid:none) Plasmodium falciparum VarP (varP) ... 34 9.7
T16840(T16840)hypothetical protein T10E10.4 - Caenorhabditis ele... 34 9.7
(Q61810) RecName: Full=Latent-transforming growth factor beta-bi... 34 9.7
AK078659_1(AK078659|pid:none) Mus musculus adult male adrenal gl... 34 9.7
AB001327_1(AB001327|pid:none) Halocynthia roretzi mRNA for HrNot... 34 9.7
(Q60519) RecName: Full=Semaphorin-5B; AltName: Full=Semaphorin-G... 34 9.7
S44208(S44208) extracellular matrix protein B - Dictyostelium mi... 34 9.7
(O94813) RecName: Full=Slit homolog 2 protein; Short=Sl... 34 9.7
AC116977_110(AC116977|pid:none) Dictyostelium discoideum chromos... 34 9.7
AY380826_16(AY380826|pid:none) Lymphocystis disease virus - isol... 34 9.7
BC143978_1(BC143978|pid:none) Homo sapiens slit homolog 2 (Droso... 34 9.7
(O75690) RecName: Full=Keratin-associated protein 5-8; AltName: ... 34 9.7
AL035436_2(AL035436|pid:none) Drosophila melanogaster cosmid clo... 34 9.7
AJ006692_1(AJ006692|pid:none) Homo sapiens UHS KerB gene. 34 9.7
(P13508) RecName: Full=Protein glp-1; Flags: Precursor; &A32901... 34 9.7
EU685294_1(EU685294|pid:none) Branchiostoma lanceolatum notch re... 34 9.7
M16152_1(M16152|pid:none) Drosophila melanogaster Notch growth f... 34 9.7
AK129362_1(AK129362|pid:none) Mus musculus mRNA for mKIAA1445 pr... 34 9.7
U39644_2(U39644|pid:none) Caenorhabditis elegans cosmid T10E10, ... 34 9.7
EF158103_1(EF158103|pid:none) Plasmodium falciparum erythrocyte ... 34 9.7
>AC115680_25(AC115680|pid:none) Dictyostelium discoideum chromosome
2 map 4915084-5005461 strain AX4, complete sequence.
Length = 287
Score = 298 bits (762), Expect(2) = e-117
Identities = 154/196 (78%), Positives = 161/196 (82%), Gaps = 1/196 (0%)
Frame = +1
Query: 67 IVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCES 246
+VNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCES
Sbjct: 1 MVNVNNSIDLCLSNPKKALVNQACKYSTDCEYPLFCGSGNGYGKNATCSKNIETGGSCES 60
Query: 247 NNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIPR*CLHCPIIN-VNSH 423
NNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSI C N +
Sbjct: 61 NNQCTPCNVCFNAKCKVKLYLGDACDENKSYCSSSVCIKGKCSIQGDV--CTANNQCKFN 118
Query: 424 N*LQIW*MRPIRRTEGSSCDKDSSCSLTNACVGGKCVTRVSQKPLGAVCNSFK*MFKYSL 603
N + P+ + EGSSCDKDSSCSLTNACVGGKCVT+ QKPLGAVCNS +S
Sbjct: 119 NYCKSGKCVPLEK-EGSSCDKDSSCSLTNACVGGKCVTKY-QKPLGAVCNSSNECQVFS- 175
Query: 604 AHVCGAQWVKCSVYNQ 651
HVCGA KCSVYNQ
Sbjct: 176 GHVCGANG-KCSVYNQ 190
Score = 149 bits (376), Expect(2) = e-117
Identities = 72/88 (81%), Positives = 75/88 (85%)
Frame = +3
Query: 699 PNGSCVWCRG*KLENRWCWIYPVGALKNGKCPSLLSSVSSCMTRERCTENTPTGCPKCYP 878
PNG C+ C+ + EN C VGALKN KCPSLLSS SSCMTRERCTENTPTGCPKCYP
Sbjct: 203 PNGMCM-CKS-ETENV-CVDLSVGALKNDKCPSLLSSFSSCMTRERCTENTPTGCPKCYP 259
Query: 879 IFMCYQYSCFYMNQFIRSTQNYYKSFCS 962
IFMCYQYSCFYMNQFIRSTQNYYKSFCS
Sbjct: 260 IFMCYQYSCFYMNQFIRSTQNYYKSFCS 287
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 1,696,220,663
Number of extensions: 37852558
Number of successful extensions: 103939
Number of sequences better than 10.0: 164
Number of HSP's gapped: 102892
Number of HSP's successfully gapped: 199
Length of query: 348
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 219
Effective length of database: 633,664,753
Effective search space: 138772580907
Effective search space used: 138772580907
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
4 |
| SS (DIR, S) |
7 |
| SH (FL, L) |
0 |
| SF (FL, S) |
1 |
| CH (FL, L) |
2 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |