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Dicty_cDB
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U02567-1
Contig ID Contig-U02567-1
Contig update 2002. 9.13
Contig sequence 
>Contig-U02567-1 (Contig-U02567-1Q) /CSM_Contig/Contig-U02567-1Q.Seq.d
ATAAATAAATATTTATTCATTGTTCCTTCTATTTTTTTAACATTAATTAA
ATATTAAAAAAATCATTACATATAATTTTAATTTTTAAAAATTTAAAAAT
GGAGACTGCAACATTAGTAAGTTTAAATGCAGGAATCCAAGGGGGTAAAT
CACTTAAGAATACATACAGAAATCAAATAAAAACTAATTTGTTTTTTGAT
GAGAATTATAAATTAATTGAAAATTTTATATTATGTATACAAGAGATTGA
TAGAGATTTTCAGGATTTCAAGAATTATGGAAATTTAAAAAATAAAACAA
GTTCAAAAGATAAATCAAAAAAAGAAAATCAACTAAGAATAATATATAAT
AATTCAAATCTTGAAGTTATTGAAGAAGTTTTAGTTGACATTGGTTCAAG
ACTCCAGATTGTTTCTTTTAAACTTAATGATGTTTACTTTGTATTAATTA
ATTGCCATATACCACAAAAGAAGAAATTAAAACTTGGTGCAATAGAAAAT
TTTTTTATTTTGAGAGAAATGGTAAAAAATTTTCATTATTATAATATTCC
TTTTATAATTGCTGGTGATATAAATCATAATAGAA
Gap no gap
Contig length 585
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 2
Number of EST 2
Link to clone list U02567
List of clone(s) 

est1=CFD332F,1,586
est2=AFE118F,122,407
Translated Amino Acid sequence 
k*ifihcsfyffnin*ILKKSLHIILIFKNLKMETATLVSLNAGIQGGKSLKNTYRNQIK
TNLFFDENYKLIENFILCIQEIDRDFQDFKNYGNLKNKTSSKDKSKKENQLRIIYNNSNL
EVIEEVLVDIGSRLQIVSFKLNDVYFVLINCHIPQKKKLKLGAIENFFILREMVKNFHYY
NIPFIIAGDINHNR
Translated Amino Acid sequence (All Frames) 
Frame A:
inkylfivpsifltliky*knhyi*f*flki*kwrlqh**v*mqeskgvnhlrihteik*
klicflmriin*lkilyyvykrlieifrisrimei*kikqvqkinqkkkin*e*yiiiqi
lkllkkf*ltlvqdsrlfllnlmmftly*liaiyhkrrn*nlvq*kiflf*ekw*kifii
iifll*llvi*iiie


Frame B:
*iniyslfllff*h*lnikkiitynfnf*kfkngdcniskfkcrnprg*it*eyiqksnk
n*fvf**el*in*kfyimytrd**rfsgfqelwkfkk*nkfkr*ikkrkstknni**fks
*sy*rsfs*hwfktpdcff*t**cllcin*lpyttkeeiktwcnrkffyferngkkfsll
*ysfyncw*yks**


Frame C:
k*ifihcsfyffnin*ILKKSLHIILIFKNLKMETATLVSLNAGIQGGKSLKNTYRNQIK
TNLFFDENYKLIENFILCIQEIDRDFQDFKNYGNLKNKTSSKDKSKKENQLRIIYNNSNL
EVIEEVLVDIGSRLQIVSFKLNDVYFVLINCHIPQKKKLKLGAIENFFILREMVKNFHYY
NIPFIIAGDINHNR
own update 2004. 6. 9
Homology vs CSM-cDNA 
Query= Contig-U02567-1 (Contig-U02567-1Q)
/CSM_Contig/Contig-U02567-1Q.Seq.d
         (585 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02567-1 (Contig-U02567-1Q) /CSM_Contig/Conti...   468  e-132
Contig-U12829-1 (Contig-U12829-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11097-1 (Contig-U11097-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U13914-1 (Contig-U13914-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U13469-1 (Contig-U13469-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U12450-1 (Contig-U12450-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U03104-1 (Contig-U03104-1Q) /CSM_Contig/Conti...    36  0.041
Contig-U13844-1 (Contig-U13844-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U12504-1 (Contig-U12504-1Q) /CSM_Contig/Conti...    34  0.16
Contig-U01919-1 (Contig-U01919-1Q) /CSM_Contig/Conti...    32  0.64

>Contig-U02567-1 (Contig-U02567-1Q) /CSM_Contig/Contig-U02567-1Q.Seq.d
          Length = 585

 Score =  468 bits (236), Expect = e-132
 Identities = 250/257 (97%)
 Strand = Plus / Plus

                                                                       
Query: 329 tcaactaagaataatatataataattcaaatcttgaagttattgaagaagttttagttga 388
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tcaactaagaataatatataataattcaaatcttgaagttattgaagaagttttagttga 388

                                                                       
Query: 389 cattggttcaagactccagattgtttcttttaaacttaatgatgtttactttgtattaat 448
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 cattggttcaagactccagattgtttcttttaaacttaatgatgtttactttgtattaat 448

                                                                       
Query: 449 taattgccatataccacaaaagaagaaattaaaacttggtgcaatagaaaannnnnnnat 508
           |||||||||||||||||||||||||||||||||||||||||||||||||||       ||
Sbjct: 449 taattgccatataccacaaaagaagaaattaaaacttggtgcaatagaaaatttttttat 508

                                                                       
Query: 509 tttgagagaaatggtaaaaaattttcattattataatattccttttataattgctggtga 568
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 tttgagagaaatggtaaaaaattttcattattataatattccttttataattgctggtga 568

                            
Query: 569 tataaatcataatagaa 585
           |||||||||||||||||
Sbjct: 569 tataaatcataatagaa 585


 Score =  367 bits (185), Expect = e-102
 Identities = 185/185 (100%)
 Strand = Plus / Plus

                                                                       
Query: 96  aaaatggagactgcaacattagtaagtttaaatgcaggaatccaagggggtaaatcactt 155
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 96  aaaatggagactgcaacattagtaagtttaaatgcaggaatccaagggggtaaatcactt 155

                                                                       
Query: 156 aagaatacatacagaaatcaaataaaaactaatttgttttttgatgagaattataaatta 215
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 156 aagaatacatacagaaatcaaataaaaactaatttgttttttgatgagaattataaatta 215

                                                                       
Query: 216 attgaaaattttatattatgtatacaagagattgatagagattttcaggatttcaagaat 275
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 216 attgaaaattttatattatgtatacaagagattgatagagattttcaggatttcaagaat 275

                
Query: 276 tatgg 280
           |||||
Sbjct: 276 tatgg 280


 Score = 61.9 bits (31), Expect = 7e-10
 Identities = 31/31 (100%)
 Strand = Plus / Plus

                                         
Query: 1  ataaataaatatttattcattgttccttcta 31
          |||||||||||||||||||||||||||||||
Sbjct: 1  ataaataaatatttattcattgttccttcta 31


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                        
Query: 4  aataaatatttatt 17
          ||||||||||||||
Sbjct: 17 aataaatatttatt 4


>Contig-U12829-1 (Contig-U12829-1Q) /CSM_Contig/Contig-U12829-1Q.Seq.d
          Length = 621

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 207 tataaattaattgaaaatt 225
           |||||||||||||||||||
Sbjct: 203 tataaattaattgaaaatt 221


>Contig-U11097-1 (Contig-U11097-1Q) /CSM_Contig/Contig-U11097-1Q.Seq.d
          Length = 3265

 Score = 38.2 bits (19), Expect = 0.010
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 207 tataaattaattgaaaatt 225
           |||||||||||||||||||
Sbjct: 525 tataaattaattgaaaatt 543


 Score = 28.2 bits (14), Expect = 9.9
 Identities = 14/14 (100%)
 Strand = Plus / Plus

                          
Query: 216  attgaaaattttat 229
            ||||||||||||||
Sbjct: 1306 attgaaaattttat 1319


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,416
Number of Sequences: 6905
Number of extensions: 13416
Number of successful extensions: 1491
Number of sequences better than 10.0: 551
length of query: 585
length of database: 5,674,871
effective HSP length: 16
effective length of query: 569
effective length of database: 5,564,391
effective search space: 3166138479
effective search space used: 3166138479
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2009. 5.18
Homology vs DNA 
Query= Contig-U02567-1 (Contig-U02567-1Q) /CSM_Contig/Contig-U02567-1Q.Seq.d
         (585 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ360708) Dictyostelium discoideum cDNA clone:ddc7p07, 5' e...   357   0.0    4
(BJ324982) Dictyostelium discoideum cDNA clone:dda9c05, 5' e...   272   5e-97  3
(CP000685) Flavobacterium johnsoniae UW101, complete genome.       40   0.003  16
(AL844506) Plasmodium falciparum chromosome  7.                    38   0.014  14
(EK321358) 1095462430391 Global-Ocean-Sampling_GS-31-01-01-1...    42   0.015  2
(AF295546) Malawimonas jakobiformis mitochondrial DNA, compl...    36   0.020  4
(EK089216) 1092961197985 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.096  1
(AC195698) Myotis lucifugus clone CH235-95E14, WORKING DRAFT...    42   0.16   3
(AC117070) Dictyostelium discoideum chromosome 2 map 2097701...    34   0.20   7
(AY702979) Capsicum annuum clone YAC YCA22D8 genomic sequence.     40   0.34   2
(AL833785) Mouse DNA sequence from clone RP23-191H7 on chrom...    48   0.38   1
(X98130) Arabidopsis thaliana 81kb genomic sequence.               48   0.38   1
(AB028611) Arabidopsis thaliana genomic DNA, chromosome 3, P...    48   0.38   1
(AK143334) Mus musculus 2 days pregnant adult female ovary c...    48   0.38   1
(EK464730) 1095469414746 Global-Ocean-Sampling_GS-32-01-01-1...    48   0.38   1
(BB846854) Mus musculus adult male kidney cDNA, RIKEN full-l...    48   0.38   1
(BB666282) Mus musculus 2 days pregnant adult female ovary c...    48   0.38   1
(GH462359) CCUA4107.g1 CCUA Peromyscus polionotus subgrisieu...    48   0.38   1
(CP000254) Methanospirillum hungatei JF-1, complete genome.        48   0.38   1
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.40   11
(AC118942) Homo sapiens chromosome 11, clone RP11-15P23, com...    36   0.43   4
(AC171349) Bos taurus clone CH240-306M4, WORKING DRAFT SEQUE...    38   0.45   6
(AC140487) Mus musculus BAC clone RP24-139I9 from chromosome...    40   0.45   4
(CP000993) Borrelia recurrentis A1, complete genome.               38   0.48   15
(CP000976) Borrelia duttonii Ly, complete genome.                  38   0.48   15
(CP000932) Campylobacter lari RM2100, complete genome.             34   0.79   14
(AC149040) Medicago truncatula chromosome 7 clone mth2-9f22,...    36   0.82   2
(AC135234) Medicago truncatula clone mth2-18a1, complete seq...    36   0.82   2
(FG664257) G1142P322FO10.T0 Anolis carolinensis pooled norma...    34   0.88   3
(AC234734) Brassica rapa subsp. pekinensis chromosome Linkag...    36   0.92   5
(DX408629) SOYF566TV LargeInsertSoybeanGenLibBuild4 Glycine ...    36   1.0    2
(CP001056) Clostridium botulinum B str. Eklund 17B, complete...    34   1.1    14
(AE014826) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   1.1    7
(AE014819) Plasmodium falciparum 3D7 chromosome 14 section 4...    32   1.1    9
(AL929352) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   1.2    10
(AY863213) Smittium culisetae mitochondrion, complete genome.      42   1.3    4
(AC216460) Populus trichocarpa clone POP078-K23, complete se...    36   1.3    5
(BV353573) S230P6569RA8.T0 Rottweiler Canis familiaris STS g...    46   1.5    1
(AC214271) MACACA MULATTA BAC clone CH250-157A8 from chromos...    46   1.5    1
(AC214248) MACACA MULATTA BAC clone CH250-474E4 from chromos...    46   1.5    1
(AC206413) Pongo abelii BAC clone CH276-254A20 from chromoso...    46   1.5    1
(CU651590) M.truncatula DNA sequence from clone MTH2-69F9 on...    46   1.5    1
(DQ927305) Tetrahymena pigmentosa strain UM1060 mitochondrio...    46   1.5    1
(AC092630) Homo sapiens BAC clone RP11-321C18 from 2, comple...    46   1.5    1
(AC160766) Bos taurus clone CH240-97H20, WORKING DRAFT SEQUE...    46   1.5    1
(AC111363) Rattus norvegicus clone CH230-88F9, *** SEQUENCIN...    46   1.5    1
(AC106224) Rattus norvegicus clone CH230-72I8, *** SEQUENCIN...    46   1.5    1
(AC099285) Rattus norvegicus clone CH230-201A7, WORKING DRAF...    46   1.5    1
(AC193701) Echinops telfairi clone CH238-115I10, WORKING DRA...    46   1.5    1
(AC193063) Echinops telfairi clone CH238-442J20, WORKING DRA...    46   1.5    1
(EK524690) 1095515637662 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.5    1
(EK479897) 1095469511075 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.5    1
(EK449989) 1095467161504 Global-Ocean-Sampling_GS-32-01-01-1...    46   1.5    1
(EJ210176) 1092345450015 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.5    1
(CR347576) mte1-81B17FM1 BAC end, cultivar Jemalong A17 of M...    46   1.5    1
(CR311247) mte1-33A22FM1 BAC end, cultivar Jemalong A17 of M...    46   1.5    1
(FD743079) WS04222.C21_E21 SS-NE-27 Picea sitchensis cDNA cl...    46   1.5    1
(FD730471) WS03734.C21_L16 SS-B-N-22 Picea sitchensis cDNA c...    46   1.5    1
(CP000263) Buchnera aphidicola str. Cc (Cinara cedri), compl...    46   1.5    1
(CR936479) Zebrafish DNA sequence from clone CH211-133H24 in...    38   1.9    2
(AP006655) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   2.0    5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    32   2.1    11
(AC213090) Populus trichocarpa clone POP118-O19, complete se...    42   2.2    4
(AE014824) Plasmodium falciparum 3D7 chromosome 14 section 9...    34   2.2    10
(AC232413) Lama pacos clone CH246-3G3, WORKING DRAFT SEQUENC...    40   2.2    3
(AL929354) Plasmodium falciparum strain 3D7, chromosome 5, s...    34   2.3    9
(AC163169) Bos taurus clone CH240-135M24, *** SEQUENCING IN ...    40   2.4    2
(AC223535) Bos taurus clone CH240-467E20, WORKING DRAFT SEQU...    34   2.4    5
(AM465073) Vitis vinifera, whole genome shotgun sequence, co...    38   2.5    3
(CU405721) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    36   2.6    4
(FH573603) CHO_OF4369xb08r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   2.7    2
(AX739961) Sequence 1 from Patent WO03000296.                      36   2.7    6
(AX711879) Sequence 1 from Patent WO03000727.                      36   2.7    6
(AL136218) Human DNA sequence from clone RP11-101D11 on chro...    36   2.8    5
(AC006211) Homo sapiens chromosome 18, clone hRPK.537_E_1, c...    38   2.8    4
(AC026809) Homo sapiens chromosome 5 clone RP11-54J1, WORKIN...    34   2.9    2
(AC026750) Homo sapiens chromosome 5 clone RP11-469O13, WORK...    34   2.9    2
(AC026746) Homo sapiens chromosome 5 clone RP11-2O17, comple...    34   2.9    2
(AP010025) Lotus japonicus genomic DNA, chromosome 3, clone:...    38   3.0    3
(AC094086) Homo sapiens chromosome 5 clone CTD-2170G1, compl...    34   3.0    2
(BZ397786) EINDV23TF EI_10_12_KB Entamoeba invadens genomic ...    42   3.0    2
(AJ591368) Arabidopsis thaliana T-DNA flanking sequence, lef...    38   3.1    2
(EJ109998) 1092343151010 Global-Ocean-Sampling_GS-27-01-01-1...    40   3.2    2
(AL929358) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   3.4    7
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    40   3.9    9
(AC216673) Populus trichocarpa clone POP019-C15, complete se...    34   4.1    5
(BX004980) Zebrafish DNA sequence from clone DKEY-15N5 in li...    40   4.2    3
(AC097061) Homo sapiens chromosome 1 clone RP11-415L24, comp...    34   4.3    6
(AG247874) Lotus japonicus DNA, clone:LjT21m18_not.                34   4.3    2
(BX927184) Zebrafish DNA sequence from clone DKEY-125I20 in ...    40   4.4    4
(DQ073796) Uncultured bacterium MedeBAC82F10 clone MedeBAC82...    38   4.5    2
(AE014843) Plasmodium falciparum 3D7 chromosome 11 section 8...    36   4.6    7
(FP102579) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    42   4.7    3
(AC007177) Drosophila melanogaster, chromosome 2R, region 59...    38   4.7    4
(EG550879) MM01A23_XP Sugar Beet germination cDNA library Be...    34   4.9    2
(AM462591) Vitis vinifera contig VV79X002449.2, whole genome...    38   4.9    2
(EA618325) Sequence 1 from patent US 7364864.                      36   5.0    6
(DD322105) ANGE gene in Atopy.                                     36   5.0    6
(DD144930) ANGE gene in Atopy.                                     36   5.0    6
(AL445563) Mycoplasma pulmonis (strain UAB CTIP) complete ge...    32   5.1    9
(AM438827) Vitis vinifera, whole genome shotgun sequence, co...    34   5.1    4
(AY325300) Paramecium primaurelia strain 156 chromosome frag...    34   5.5    3
(AL645938) Mouse DNA sequence from clone RP23-15E24 on chrom...    36   5.6    5
(CU467882) Zebrafish DNA sequence from clone DKEY-211B20 in ...    44   5.9    1
(BX323543) Zebrafish DNA sequence from clone DKEYP-67E1 in l...    44   5.9    1
(AL929397) Mouse DNA sequence from clone RP23-87N9 on chromo...    44   5.9    1
(AC182231) Mus musculus BAC clone RP23-356C18 from chromosom...    44   5.9    1
(AC146599) Mus musculus BAC clone RP24-128L9 from 6, complet...    44   5.9    1
(AC131335) Mus musculus chromosome 8, clone RP23-32D9, compl...    44   5.9    1
(AC125088) Mus musculus BAC clone RP24-152J3 from chromosome...    44   5.9    1
(AC110169) Mus musculus chromosome 9, clone RP23-233D3, comp...    44   5.9    1
(CT963107) Medicago truncatula chromosome 5 clone mte1-34b22...    44   5.9    1
(AC226012) Solanum lycopersicum chromosome 6 clone C06HBa018...    44   5.9    1
(AC215426) Solanum lycopersicum chromosome 2 clone C02HBa021...    44   5.9    1
(AC215378) Solanum lycopersicum chromosome 2 clone C02HBa007...    44   5.9    1
(AC023468) Homo sapiens BAC clone RP11-432O12 from 2, comple...    44   5.9    1
(AC159051) Bos taurus clone CH240-64H19, WORKING DRAFT SEQUE...    44   5.9    1
(AC140384) Mus musculus chromosome UNK clone RP23-166N20, WO...    44   5.9    1
(AC125884) Rattus norvegicus clone CH230-260K22, *** SEQUENC...    44   5.9    1
(AC099927) Mus musculus clone RP23-16K8, LOW-PASS SEQUENCE S...    44   5.9    1
(CU302341) Medicago truncatula chromosome 5 clone mth2-57h3,...    44   5.9    1
(CR855304) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   5.9    1
(AC224078) Bos taurus clone CH240-451B12, WORKING DRAFT SEQU...    44   5.9    1
(AC222711) Bos taurus clone CH240-441B14, WORKING DRAFT SEQU...    44   5.9    1
(AC220616) Bos taurus clone CH240-351L12, WORKING DRAFT SEQU...    44   5.9    1
(AC211066) Solanum lycopersicum chromosome 6 clone C06HBa025...    44   5.9    1
(AC185378) Microcebus murinus clone CH257-411J2, WORKING DRA...    44   5.9    1
(BH435427) BOGFE23TF BOGF Brassica oleracea genomic clone BO...    44   5.9    1
(BH423838) BOHOR59TR BOHO Brassica oleracea genomic clone BO...    44   5.9    1
(AZ979325) 2M0256A06F Mouse 10kb plasmid UUGC2M library Mus ...    44   5.9    1
(FH906377) CHO_ONF037xb05f1.ab1 CHO_ONF Nicotiana tabacum ge...    44   5.9    1
(ET855792) CHO_OF361xc09r1.ab1 CHO_OF Nicotiana tabacum geno...    44   5.9    1
(ER915604) AH_PBa0092B23.g1 AH_PBa Amaranthus hypochondriacu...    44   5.9    1
(ER441845) 1092963815973 Global-Ocean-Sampling_GS-35-01-01-1...    44   5.9    1
(EK155748) 1095458004225 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.9    1
(EK130871) 1093009349815 Global-Ocean-Sampling_GS-31-01-01-1...    44   5.9    1
(EJ357636) 1092963667310 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.9    1
(EJ348887) 1092963568333 Global-Ocean-Sampling_GS-28-01-01-1...    44   5.9    1
(CR306733) mte1-27G2RM1 BAC end, cultivar Jemalong A17 of Me...    44   5.9    1
(CR109684) Reverse strand read from insert in 3'HPRT inserti...    44   5.9    1
(BZ075584) lkf37g03.b1 B.oleracea002 Brassica oleracea genom...    44   5.9    1
(BH987652) oeg85d09.g1 B.oleracea002 Brassica oleracea genom...    44   5.9    1
(AG383734) Mus musculus molossinus DNA, clone:MSMg01-195A21....    44   5.9    1
(AG120024) Pan troglodytes DNA, clone: PTB-128K08.R.               44   5.9    1
(AG107418) Pan troglodytes DNA, clone: PTB-112D17.R.               44   5.9    1
(EH214286) USDA-FP_177072 WHMH (pink hibiscus mealybug) Maco...    44   5.9    1
(EE411072) 55ACACPE_UP_017_D01_15DEC2004_009 Brassica napus ...    44   5.9    1
(DY830803) CTOY6360.b1_O06.ab1 CTO(XYZ) dandelion Taraxacum ...    44   5.9    1
(DV785494) Hw_liver_23_050718_B01 Bos taurus CF-24-HW liver ...    44   5.9    1
(DN711012) CLJ92-G04.x1d-t SHGC-CLJ Gasterosteus aculeatus c...    44   5.9    1
(DC877928) Samia cynthia ricini cDNA, clone: S06A01NCLL0023_...    44   5.9    1
(DC871794) Samia cynthia ricini cDNA, clone: S06A01NCLL0001_...    44   5.9    1
(CJ350875) Molgula tectiformis cDNA, cleaving embryo clone:m...    44   5.9    1
(BX849542) RZPD Xenopus laevis cDNA clone IMAGp998L2311132 =...    44   5.9    1
(BM262885) dai99f12.y1 NICHD_XGC_Ov1 Xenopus laevis cDNA clo...    44   5.9    1
(BJ372054) Dictyostelium discoideum cDNA clone:ddc11h02, 3' ...    44   5.9    1
(AW638748) bl73h04.w1 Blackshear/Soares normalized Xenopus e...    44   5.9    1
(EX165216) F04_P11_031 Cotton 1-14 day post anthesis Lambda ...    44   5.9    1
(CP001176) Bacillus cereus B4264, complete genome.                 44   5.9    1
(BA000023) Sulfolobus tokodaii str. 7 DNA, complete genome.        44   5.9    1
(AE016877) Bacillus cereus ATCC 14579, complete genome.            44   5.9    1
(CR382401) Plasmodium falciparum chromosome 6, complete sequ...    34   5.9    9
(BZ382855) SALK_119011.50.85.x Arabidopsis thaliana TDNA ins...    38   6.1    2
(AM448287) Vitis vinifera contig VV78X212182.2, whole genome...    32   6.2    3
(AC196754) Citrus sinensis clone CSRBBa-032P20, WORKING DRAF...    38   6.3    4
(AC091150) Homo sapiens chromosome 18, clone RP11-735D6, com...    36   6.4    4
(AP009658) Lotus japonicus genomic DNA, chromosome 1, clone:...    38   6.4    4
(CT955744) Arabidopsis thaliana T-DNA flanking sequence GK-9...    38   6.8    2
(BX510360) Zebrafish DNA sequence from clone DKEY-265A7 in l...    38   6.8    5
(AE014849) Plasmodium falciparum 3D7 chromosome 12, section ...    34   6.9    6
(CT955745) Arabidopsis thaliana T-DNA flanking sequence GK-9...    38   7.2    2
(AC025417) Genomic sequence for Arabidopsis thaliana BAC T12...    36   7.3    3
(AC173809) Bos taurus clone CH240-93B22, WORKING DRAFT SEQUE...    38   7.4    3
(AC116977) Dictyostelium discoideum chromosome 2 map 5515173...    34   7.4    7
(EK235492) 1095460198242 Global-Ocean-Sampling_GS-31-01-01-1...    32   7.6    3
(AC162216) Bos taurus clone CH240-111N19, WORKING DRAFT SEQU...    36   7.6    6
(DC207123) Plasmodium berghei strain ANKA cDNA clone:MG00711...    34   7.6    2
(AP010903) Solanum lycopersicum DNA, chromosome 8, clone: C0...    36   7.7    4
(CR318596) Zebrafish DNA sequence from clone DKEY-104N16 in ...    42   8.1    5
(AX344551) Sequence 2 from Patent WO0200932.                       34   8.1    6
(CU019653) Zebrafish DNA sequence from clone DKEY-190N15 in ...    34   8.5    4
(AC006279) Plasmodium falciparum chromosome 12 clone PFYAC61...    32   8.6    7
(AC131986) Mus musculus chromosome 14, clone RP24-180B18, co...    34   8.6    5
(CT961290) Equus caballus GSS, BAC clone CH241-19F3, SP6 end...    30   8.8    3
(FF747044) XABT56775.rev Gateway compatible cien cDNA librar...    36   9.2    2
(CT867947) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    36   9.4    3
(AY691419) Planococcus citri cytochrome b (cytb) gene, parti...    34   9.4    3
(AQ897728) HS_3135_A2_C10_T7C CIT Approved Human Genomic Spe...    38   9.7    2
(EJ506736) 1095403722390 Global-Ocean-Sampling_GS-28-01-01-1...    36   10.0   2

>(BJ360708) Dictyostelium discoideum cDNA clone:ddc7p07, 5' end,
           single read.
          Length = 586

 Score =  357 bits (180), Expect(4) = 0.0
 Identities = 180/180 (100%)
 Strand = Plus / Plus


Query: 101 ggagactgcaacattagtaagtttaaatgcaggaatccaagggggtaaatcacttaagaa 160
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 101 ggagactgcaacattagtaagtttaaatgcaggaatccaagggggtaaatcacttaagaa 160


Query: 161 tacatacagaaatcaaataaaaactaatttgttttttgatgagaattataaattaattga 220
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 161 tacatacagaaatcaaataaaaactaatttgttttttgatgagaattataaattaattga 220


Query: 221 aaattttatattatgtatacaagagattgatagagattttcaggatttcaagaattatgg 280
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 221 aaattttatattatgtatacaagagattgatagagattttcaggatttcaagaattatgg 280

 Score =  289 bits (146), Expect(4) = 0.0
 Identities = 146/146 (100%)
 Strand = Plus / Plus


Query: 354 tcaaatcttgaagttattgaagaagttttagttgacattggttcaagactccagattgtt 413
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 354 tcaaatcttgaagttattgaagaagttttagttgacattggttcaagactccagattgtt 413


Query: 414 tcttttaaacttaatgatgtttactttgtattaattaattgccatataccacaaaagaag 473
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 414 tcttttaaacttaatgatgtttactttgtattaattaattgccatataccacaaaagaag 473


Query: 474 aaattaaaacttggtgcaatagaaaa 499
           ||||||||||||||||||||||||||
Sbjct: 474 aaattaaaacttggtgcaatagaaaa 499

 Score =  157 bits (79), Expect(4) = 0.0
 Identities = 79/79 (100%)
 Strand = Plus / Plus


Query: 507 attttgagagaaatggtaaaaaattttcattattataatattccttttataattgctggt 566
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 attttgagagaaatggtaaaaaattttcattattataatattccttttataattgctggt 566


Query: 567 gatataaatcataatagaa 585
           |||||||||||||||||||
Sbjct: 567 gatataaatcataatagaa 585

 Score = 60.0 bits (30), Expect(4) = 0.0
 Identities = 30/30 (100%)
 Strand = Plus / Plus


Query: 1  ataaataaatatttattcattgttccttct 30
          ||||||||||||||||||||||||||||||
Sbjct: 1  ataaataaatatttattcattgttccttct 30

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 739,194,395
Number of extensions: 55998081
Number of successful extensions: 4686889
Number of sequences better than 10.0: 193
Length of query: 585
Length of database: 101,790,757,118
Length adjustment: 23
Effective length of query: 562
Effective length of database: 99,442,330,388
Effective search space: 55886589678056
Effective search space used: 55886589678056
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.19
Homology vs Protein 
Query= Contig-U02567-1 (Contig-U02567-1Q) /CSM_Contig/Contig-U02567-1Q.Seq.d
         (585 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

FM992690_93(FM992690|pid:none) Candida dubliniensis CD36 chromos...    34   3.3
AM910983_10(AM910983|pid:none) Plasmodium knowlesi strain H chro...    33   5.7
(Q80UM3) RecName: Full=NMDA receptor-regulated protein 1; AltNam...    33   7.4
AK314626_1(AK314626|pid:none) Homo sapiens cDNA, FLJ95468, highl...    33   7.4
AX391847_1(AX391847|pid:none) Sequence 1 from Patent WO0216614.        33   7.4
AF237622_1(AF237622|pid:none) Mus musculus acetyltransferase Tub...    33   7.4
(Q9BXJ9) RecName: Full=NMDA receptor-regulated protein 1; AltNam...    33   7.4
BA000001_929(BA000001|pid:none) Pyrococcus horikoshii OT3 DNA, c...    33   7.4
(Q5R4J9) RecName: Full=NMDA receptor-regulated protein 1;  &CR86...    33   7.4
(A4XL47) RecName: Full=DNA mismatch repair protein mutS;  &CP000...    33   7.4
AF510858_1(AF510858|pid:none) Mus musculus N-terminal aceyltrans...    33   7.4
AK304417_1(AK304417|pid:none) Homo sapiens cDNA FLJ58231 complet...    33   7.4
AY112670_1(AY112670|pid:none) Homo sapiens transcriptional coact...    33   7.4
BC030167_1(BC030167|pid:none) Mus musculus NMDA receptor-regulat...    33   7.4
CP000439_1284(CP000439|pid:none) Francisella tularensis subsp. n...    32   9.6
AY293579_7(AY293579|pid:none) Francisella tularensis subsp. novi...    32   9.6
AY168957_2(AY168957|pid:none) Mycoplasma fermentans hypothetical...    32   9.6
AP009608_634(AP009608|pid:none) Mycoplasma fermentans PG18 DNA, ...    32   9.6

>FM992690_93(FM992690|pid:none) Candida dubliniensis CD36 chromosome
           3, complete sequence.
          Length = 1006

 Score = 33.9 bits (76), Expect = 3.3
 Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 8/134 (5%)
 Frame = +3

Query: 171 NQIKTNLFFDENYKLIENF-ILCIQEIDRDFQDFKNYGNLXXXXXXXXXXXXENQLRIIY 347
           ++IK NL     +K + N  ++ IQE+ + F +F+ Y N              +QL   Y
Sbjct: 578 DEIKLNLIDKNRWKYLYNLPVVPIQELSKKFSNFEYYDN--------------SQLLSGY 623

Query: 348 NNSNLEVIEEVLVDIGSRLQIVSFKLNDVYF-------VLINCHIPQKKKLKLGAIENFF 506
               L  IE   +D  +  QI+  KLND  F       + +   +P+   L L  I+N
Sbjct: 624 LTFLLNKIELTNLDWENLFQII--KLNDGKFDNYIGRIIQLQNDVPKDSLLHL-LIKNNV 680

Query: 507 ILREMVKNFHYYNI 548
            L   + NFH + I
Sbjct: 681 TLSTTIFNFHNWTI 694

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 749,221,452
Number of extensions: 13448606
Number of successful extensions: 27875
Number of sequences better than 10.0: 18
Number of HSP's gapped: 27862
Number of HSP's successfully gapped: 18
Length of query: 195
Length of database: 1,051,180,864
Length adjustment: 122
Effective length of query: 73
Effective length of database: 656,320,666
Effective search space: 47911408618
Effective search space used: 47911408618
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.92  gvh: 0.55  alm: 0.43  top: 0.40  tms: 0.00  mit: 0.33  mip: 0.08
 nuc: 0.06  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 36.0 %: nuclear
	 24.0 %: cytoplasmic
	 20.0 %: extracellular, including cell wall
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar

>> prediction for Contig-U02567-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 1
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 0
CF (FL, S) 1
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0