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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14298-1
Contig ID Contig-U14298-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14298-1 (Contig-U14298-1Q) /CSM_Contig/Contig-U14298-1Q.Seq.d
TCAAGAAGAAAGTGAAGTTGATGAAATAAACAGAAATAAATTTATAGTTG
ATTTAAGAAATGATAAAAATGATGTATCTTTAAAATTATTTAATAAATTA
AATGAAGATGAAAAACAAAAATATTTTATATCAAGAATTAAAAATTATTT
AACAGATCAAAATTATGATTTAAACTATTTAGTTGATAATATTGATGTAA
AGATTACTTCATTATGTTCAAAATATAGAAACTTTTGTTATCCTGAATTG
TTTAATAAAGATGGGATTCCAGTTAATAAAGGTATAATTATTATGGATCA
AGATAATATGGTATGAAAGAGTACAAAAATCAATATTTGGTCTATCAAAT
TTATTTAGTGGTTTATTTGGTGCAATCATTGAAGCAAAATTATTATGTCC
ACGTGTTACATCAACTTCTGGTTTAATTGGAGTTGATAATATCCCAAATT
TAATTGGTGGTGCTTTATTAGGTGGCGGATCTTCAGGTTTGTTAGGTGGT
TTATTAGGTGGAGGTAGTGGTGGTTTTAAAACTCAAACCCCTGTACCTAC
CCAACCAAATGGTGGTGGTACTGGTTTCATTGGTGGTTTCATAAGTGGTG
GAAGTACAAATGGTGGTGTAACACCATCTTTAACTCCAACTCCAACATCG
AAACCATCAAGTGGTTTTTTAGGTGGATTTATAGGTGGTGGTGGATCAAC
ACCAACACCCGCACAAACACTTTCATCAACTCCAACCCCAACCTCAACTC
CAACCCCAAATCCAACTCAAAAACCAGTATCTAGTTTCTTGGGTGGNTTA
TTTGGTGGTTCAACAACTGGTACAACACAACCTATTCAAACACCTTCACC
A
Gap no gap
Contig length 851
Chromosome number (1..6, M) 2
Chromosome length 8467578
Start point 3895633
End point 3894783
Strand (PLUS/MINUS) MINUS
Number of clones 2
Number of EST 2
Link to clone list U14298
List of clone(s) 

est1=CHF360F,1,504
est2=CHP612F,274,851
Translated Amino Acid sequence 
kkkvklmk*teinl*li*emikmmyl*nylin*mkmknknilyqelkii*qikimi*ti*
liilm*rllhyvqnietfvilnclikmgfqlikv*LLWIKIIWYERVQKSIFGLSNLFSG
LFGAIIEAKLLCPRVTSTSGLIGVDNIPNLIGGALLGGGSSGLLGGLLGGGSGGFKTQTP
VPTQPNGGGTGFIGGFISGGSTNGGVTPSLTPTPTSKPSSGFLGGFIGGGGSTPTPAQTL
SSTPTPTSTPTPNPTQKPVSSFLGGLFGGSTTGTTQPIQTPSP
Translated Amino Acid sequence (All Frames) 
Frame A:
srrk*s**nkqk*iys*fkk**k*cifkii**ik*r*ktkifyikn*klfnrskl*fklf
s**y*ckdyfimfki*kllls*iv**rwdss**rynyygsr*ygmkeyknqylvyqiylv
vylvqslkqnyyvhvlhqllv*leliisqi*lvvly*vadlqvc*vvy*vevvvvlklkp
lylpnqmvvvlvslvvs*vvevqmvv*hhl*lqlqhrnhqvvf*vdl*vvvdqhqhphkh
fhqlqpqpqlqpqiqlknqylvswvxylvvqqlvqhnlfkhlh


Frame B:
qeesevdeinrnkfivdlrndkndvslklfnklnedekqkyfisriknyltdqnydlnyl
vdnidvkitslcskyrnfcypelfnkdgipvnkgiiimdqdnmv*kstkiniwsikfi*w
fiwcnh*skiimstcyinfwfnws**ypkfnwwcfirwrifrfvrwfirwr*wwf*nsnp
ctyptkwwwywfhwwfhkwwkykwwcntifnsnsnietikwffrwiyrwwwintntrtnt
finsnpnlnsnpksnsktsi*flgwxiwwfnnwynttysntft


Frame C:
kkkvklmk*teinl*li*emikmmyl*nylin*mkmknknilyqelkii*qikimi*ti*
liilm*rllhyvqnietfvilnclikmgfqlikv*LLWIKIIWYERVQKSIFGLSNLFSG
LFGAIIEAKLLCPRVTSTSGLIGVDNIPNLIGGALLGGGSSGLLGGLLGGGSGGFKTQTP
VPTQPNGGGTGFIGGFISGGSTNGGVTPSLTPTPTSKPSSGFLGGFIGGGGSTPTPAQTL
SSTPTPTSTPTPNPTQKPVSSFLGGLFGGSTTGTTQPIQTPSP
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14298-1 (Contig-U14298-1Q)
/CSM_Contig/Contig-U14298-1Q.Seq.d
         (851 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14298-1 (Contig-U14298-1Q) /CSM_Contig/Conti...  1439  0.0
Contig-U13198-1 (Contig-U13198-1Q) /CSM_Contig/Conti...    56  6e-08
Contig-U13594-1 (Contig-U13594-1Q) /CSM_Contig/Conti...    54  3e-07
Contig-U05050-1 (Contig-U05050-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U12502-1 (Contig-U12502-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U10713-1 (Contig-U10713-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U10365-1 (Contig-U10365-1Q) /CSM_Contig/Conti...    40  0.004
Contig-U13688-1 (Contig-U13688-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U11096-1 (Contig-U11096-1Q) /CSM_Contig/Conti...    36  0.060
Contig-U02723-1 (Contig-U02723-1Q) /CSM_Contig/Conti...    36  0.060

>Contig-U14298-1 (Contig-U14298-1Q) /CSM_Contig/Contig-U14298-1Q.Seq.d
          Length = 851

 Score = 1439 bits (726), Expect = 0.0
 Identities = 729/729 (100%)
 Strand = Plus / Plus

                                                                       
Query: 123 attttatatcaagaattaaaaattatttaacagatcaaaattatgatttaaactatttag 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 123 attttatatcaagaattaaaaattatttaacagatcaaaattatgatttaaactatttag 182

                                                                       
Query: 183 ttgataatattgatgtaaagattacttcattatgttcaaaatatagaaacttttgttatc 242
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 183 ttgataatattgatgtaaagattacttcattatgttcaaaatatagaaacttttgttatc 242

                                                                       
Query: 243 ctgaattgtttaataaagatgggattccagttaataaaggtataattattatggatcaag 302
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 243 ctgaattgtttaataaagatgggattccagttaataaaggtataattattatggatcaag 302

                                                                       
Query: 303 ataatatggtatgaaagagtacaaaaatcaatatttggtctatcaaatttatttagtggt 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 303 ataatatggtatgaaagagtacaaaaatcaatatttggtctatcaaatttatttagtggt 362

                                                                       
Query: 363 ttatttggtgcaatcattgaagcaaaattattatgtccacgtgttacatcaacttctggt 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 ttatttggtgcaatcattgaagcaaaattattatgtccacgtgttacatcaacttctggt 422

                                                                       
Query: 423 ttaattggagttgataatatcccaaatttaattggtggtgctttattaggtggcggatct 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 423 ttaattggagttgataatatcccaaatttaattggtggtgctttattaggtggcggatct 482

                                                                       
Query: 483 tcaggtttgttaggtggtttattaggtggaggtagtggtggttttaaaactcaaacccct 542
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tcaggtttgttaggtggtttattaggtggaggtagtggtggttttaaaactcaaacccct 542

                                                                       
Query: 543 gtacctacccaaccaaatggtggtggtactggtttcattggtggtttcataagtggtgga 602
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 543 gtacctacccaaccaaatggtggtggtactggtttcattggtggtttcataagtggtgga 602

                                                                       
Query: 603 agtacaaatggtggtgtaacaccatctttaactccaactccaacatcgaaaccatcaagt 662
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 603 agtacaaatggtggtgtaacaccatctttaactccaactccaacatcgaaaccatcaagt 662

                                                                       
Query: 663 ggttttttaggtggatttataggtggtggtggatcaacaccaacacccgcacaaacactt 722
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 663 ggttttttaggtggatttataggtggtggtggatcaacaccaacacccgcacaaacactt 722

                                                                       
Query: 723 tcatcaactccaaccccaacctcaactccaaccccaaatccaactcaaaaaccagtatct 782
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 723 tcatcaactccaaccccaacctcaactccaaccccaaatccaactcaaaaaccagtatct 782

                                                                       
Query: 783 agtttcttgggtggnttatttggtggttcaacaactggtacaacacaacctattcaaaca 842
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 783 agtttcttgggtggnttatttggtggttcaacaactggtacaacacaacctattcaaaca 842

                    
Query: 843 ccttcacca 851
           |||||||||
Sbjct: 843 ccttcacca 851


 Score =  127 bits (64), Expect = 2e-29
 Identities = 64/64 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  tcaagaagaaagtgaagttgatgaaataaacagaaataaatttatagttgatttaagaaa 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  tcaagaagaaagtgaagttgatgaaataaacagaaataaatttatagttgatttaagaaa 60

              
Query: 61 tgat 64
          ||||
Sbjct: 61 tgat 64


>Contig-U13198-1 (Contig-U13198-1Q) /CSM_Contig/Contig-U13198-1Q.Seq.d
          Length = 702

 Score = 56.0 bits (28), Expect = 6e-08
 Identities = 34/36 (94%)
 Strand = Plus / Plus

                                               
Query: 486 ggtttgttaggtggtttattaggtggaggtagtggt 521
           ||||| |||||||||||||||||||| |||||||||
Sbjct: 530 ggtttattaggtggtttattaggtggtggtagtggt 565


 Score = 42.1 bits (21), Expect = 0.001
 Identities = 34/37 (91%), Gaps = 1/37 (2%)
 Strand = Plus / Plus

                                                
Query: 486 ggtttgttaggtggtttattagg-tggaggtagtggt 521
           ||||| ||||||||||||||||| ||| |||||||||
Sbjct: 310 ggtttattaggtggtttattaggttggtggtagtggt 346


 Score = 34.2 bits (17), Expect = 0.24
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 495 ggtggtttattaggtgg 511
           |||||||||||||||||
Sbjct: 527 ggtggtttattaggtgg 543


 Score = 34.2 bits (17), Expect = 0.24
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 495 ggtggtttattaggtgg 511
           |||||||||||||||||
Sbjct: 307 ggtggtttattaggtgg 323


 Score = 32.2 bits (16), Expect = 0.93
 Identities = 28/32 (87%)
 Strand = Plus / Plus

                                           
Query: 661 gtggttttttaggtggatttataggtggtggt 692
           ||||||| |||||||| ||  |||||||||||
Sbjct: 528 gtggtttattaggtggtttattaggtggtggt 559


>Contig-U13594-1 (Contig-U13594-1Q) /CSM_Contig/Contig-U13594-1Q.Seq.d
          Length = 570

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 39/43 (90%)
 Strand = Plus / Plus

                                                      
Query: 724 catcaactccaaccccaacctcaactccaaccccaaatccaac 766
           ||||||| ||||| |||||| ||||||||||||||| ||||||
Sbjct: 214 catcaaccccaactccaaccccaactccaaccccaactccaac 256


 Score = 36.2 bits (18), Expect = 0.060
 Identities = 36/42 (85%)
 Strand = Plus / Plus

                                                     
Query: 727 caactccaaccccaacctcaactccaaccccaaatccaactc 768
           ||||||||||||||||  |||| ||||| ||||  |||||||
Sbjct: 223 caactccaaccccaactccaaccccaactccaacaccaactc 264


 Score = 34.2 bits (17), Expect = 0.24
 Identities = 29/33 (87%)
 Strand = Plus / Plus

                                            
Query: 727 caactccaaccccaacctcaactccaaccccaa 759
           ||||||||||||||||  |||| ||||| ||||
Sbjct: 235 caactccaaccccaactccaacaccaactccaa 267


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,531
Number of Sequences: 6905
Number of extensions: 14531
Number of successful extensions: 1732
Number of sequences better than 10.0: 196
length of query: 851
length of database: 5,674,871
effective HSP length: 16
effective length of query: 835
effective length of database: 5,564,391
effective search space: 4646266485
effective search space used: 4646266485
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.20
Homology vs DNA 
Query= Contig-U14298-1 (Contig-U14298-1Q) /CSM_Contig/Contig-U14298-1Q.Seq.d
         (851 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...   787   0.0    4
(BJ370148) Dictyostelium discoideum cDNA clone:ddc53g04, 5' ...   815   0.0    3
(BJ364687) Dictyostelium discoideum cDNA clone:ddc32h15, 5' ...   381   0.0    3
(AU071855) Dictyostelium discoideum slug cDNA, clone SSC641.       56   0.002  1
(AU038450) Dictyostelium discoideum slug cDNA, clone SSH736.       56   0.002  1
(AU037220) Dictyostelium discoideum slug cDNA, clone SSB626.       56   0.002  1
(C90738) Dictyostelium discoideum slug cDNA, clone SSJ890.         56   0.002  1
(C90096) Dictyostelium discoideum slug cDNA, clone SSG531.         56   0.002  1
(BJ402687) Dictyostelium discoideum cDNA clone:dds17o16, 3' ...    56   0.002  1
(BJ392432) Dictyostelium discoideum cDNA clone:dds27k18, 5' ...    56   0.002  1
(BJ390394) Dictyostelium discoideum cDNA clone:dds22c08, 5' ...    56   0.002  1
(BJ389154) Dictyostelium discoideum cDNA clone:dds17o16, 5' ...    56   0.002  1
(BJ384589) Dictyostelium discoideum cDNA clone:ddc50c03, 3' ...    56   0.002  1
(BJ382543) Dictyostelium discoideum cDNA clone:ddc45h01, 3' ...    56   0.002  1
(BJ369293) Dictyostelium discoideum cDNA clone:ddc50c03, 5' ...    56   0.002  1
(CN746532) SAL_US033xa15f1.ab1 SAL_US N.Bentheme Nicotiana b...    50   0.14   1
(BJ368050) Dictyostelium discoideum cDNA clone:ddc45h01, 5' ...    50   0.14   1
(FH483296) CHO_OF4196xi03r1.ab1 CHO_OF4 Nicotiana tabacum ge...    38   0.36   2
(CO998136) csa02-2ms1-a06 Csa02 Cucumis sativus cDNA clone c...    36   0.42   2
(AC177702) Strongylocentrotus purpuratus clone R3-1011L4, WO...    38   0.44   4
(EJ053788) 1095456015091 Global-Ocean-Sampling_GS-26-01-01-1...    46   0.48   2
(EK209426) 1095460093202 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.54   1
(EJ325397) 1092405886174 Global-Ocean-Sampling_GS-28-01-01-1...    48   0.54   1
(EH789742) CNSS29785.b1_A08.ab1 CNS(LMS) yellow starthistle ...    48   0.54   1
(AX344570) Sequence 21 from Patent WO0200932.                      46   0.57   9
(EY331794) CAWY4419.fwd CAWY Helobdella robusta Subtracted E...    34   0.63   3
(AL929290) Zebrafish DNA sequence from clone CH211-67N1.           46   2.2    1
(AC154231) Mus musculus BAC clone RP24-339I11 from chromosom...    46   2.2    1
(DD010736) Diagnosis of known genetic Parameters within the ...    46   2.2    1
(AL358335) Human chromosome 14 DNA sequence BAC R-2G1 of lib...    46   2.2    1
(AC134186) Rattus norvegicus clone CH230-209F12, WORKING DRA...    46   2.2    1
(AC131298) Mus musculus chromosome 13 clone RP23-306N16 map ...    46   2.2    1
(AC121466) Rattus norvegicus clone CH230-168B15, WORKING DRA...    46   2.2    1
(AC120728) Rattus norvegicus clone CH230-197A14, WORKING DRA...    46   2.2    1
(AC119556) Rattus norvegicus clone CH230-219P4, WORKING DRAF...    46   2.2    1
(AC118439) Rattus norvegicus clone CH230-292B6, WORKING DRAF...    46   2.2    1
(AC098173) Rattus norvegicus clone CH230-199P24, WORKING DRA...    46   2.2    1
(AC096962) Rattus norvegicus clone CH230-95L19, WORKING DRAF...    46   2.2    1
(CT027712) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   2.2    1
(AL358337) Human chromosome 14 DNA sequence *** IN PROGRESS ...    46   2.2    1
(AC023529) Homo sapiens clone RP11-27P2, WORKING DRAFT SEQUE...    46   2.2    1
(AC013572) Homo sapiens clone RP11-2G1, WORKING DRAFT SEQUEN...    46   2.2    1
(AC013571) Homo sapiens clone RP11-2F3, WORKING DRAFT SEQUEN...    46   2.2    1
(DE209192) Branchiostoma floridae DNA, clone: CH302-098_D06_...    46   2.2    1
(EB687000) CP43_B07_058.f1 Citrus paradisi young grapefruit ...    46   2.2    1
(EB686923) CP42_B01_010.f1 Citrus paradisi young grapefruit ...    46   2.2    1
(EB685904) CP-7_C11_083.f1 Citrus paradisi young grapefruit ...    46   2.2    1
(EB685188) CP-23_C06_039.f1 Citrus paradisi young grapefruit...    46   2.2    1
(FG224983) Aats02253 Antheraea assama fifth instar larval te...    46   2.2    1
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    46   2.2    1
(AE017263) Mesoplasma florum L1 complete genome.                   46   2.2    1
(CP000806) Cyanothece sp. ATCC 51142 circular chromosome, co...    34   3.3    2
(AC155317) Mus musculus BAC clone RP23-89D6 from chromosome ...    34   4.0    2
(AC141893) Mus musculus BAC clone RP23-324F17 from chromosom...    34   4.1    2
(AC153763) Loxodonta africana clone VMRC15-160B20, complete ...    32   4.2    2
(AZ416324) 1M0191G04R Mouse 10kb plasmid UUGC1M library Mus ...    34   5.5    2
(FH987517) CHO_OF6843xa23r1.ab1 CHO_OF6 Nicotiana tabacum ge...    34   5.8    2
(BC133720) Xenopus tropicalis hypothetical protein LOC100038...    44   8.5    1
(AC161176) Mus musculus chromosome 5, clone RP24-295A5, comp...    44   8.5    1
(AC125402) Mus musculus BAC clone RP24-539G2 from chromosome...    44   8.5    1
(AM445283) Vitis vinifera contig VV78X079812.7, whole genome...    44   8.5    1
(I79546) Sequence 2 from patent US 5707822.                        44   8.5    1
(AC108675) Homo sapiens 3 BAC RP11-760N13 (Roswell Park Canc...    44   8.5    1
(AC142163) Rattus norvegicus clone CH230-285L7, WORKING DRAF...    44   8.5    1
(AC141370) Rattus norvegicus clone CH230-338D2, WORKING DRAF...    44   8.5    1
(AC108299) Rattus norvegicus clone CH230-221N24, *** SEQUENC...    44   8.5    1
(AC105702) Rattus norvegicus chromosome 18 clone CH230-54C23...    44   8.5    1
(AC103556) Rattus norvegicus chromosome 18 clone CH230-24C4,...    44   8.5    1
(AP007743) Lotus japonicus genomic DNA, chromosome 4, clone:...    44   8.5    1
(AC172630) Bos taurus clone CH240-171I3, WORKING DRAFT SEQUE...    44   8.5    1
(AC166726) Bos taurus clone CH240-182P14, WORKING DRAFT SEQU...    44   8.5    1
(AC022518) Mus musculus strain C57BL6/J chromosome 5 clone R...    44   8.5    1
(EK305622) 1095462380473 Global-Ocean-Sampling_GS-31-01-01-1...    44   8.5    1
(BH770633) LLMGtag390 MG1363 Random Sequence Tag Library Lac...    44   8.5    1
(DN017797) JGI_CAAR724.rev NIH_XGC_tropLiv1 Xenopus (Siluran...    44   8.5    1
(AU072100) Dictyostelium discoideum slug cDNA, clone SSD421.       44   8.5    1
(CX506558) JGI_XZG51728.fwd NIH_XGC_tropGas7 Xenopus (Silura...    44   8.5    1
(CX328838) JGI_XZT67826.fwd NIH_XGC_tropTad5 Xenopus (Silura...    44   8.5    1
(BB375987) Mus musculus 16 days embryo head cDNA, RIKEN full...    44   8.5    1
(X83303) S.pyogenes sfbII gene.                                    44   8.5    1
(U02290) Streptococcus pyogenes serum opacity factor gene, c...    44   8.5    1
(L14679) Lactococcus lactis pip and gerC2 genes, complete cd...    44   8.5    1
(EF071813) Mycoplasma capricolum subsp. capricolum strain 20...    44   8.5    1
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    44   8.5    1
(AM406671) Lactococcus lactis subsp. cremoris MG1363, comple...    44   8.5    1

>(AC116986) Dictyostelium discoideum chromosome 2 map 2234041-2567370
              strain AX4, complete sequence.
          Length = 333321

 Score =  787 bits (397), Expect(4) = 0.0
 Identities = 400/401 (99%)
 Strand = Plus / Plus


Query: 313    atgaaagagtacaaaaatcaatatttggtctatcaaatttatttagtggtttatttggtg 372
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189165 atgaaagagtacaaaaatcaatatttggtctatcaaatttatttagtggtttatttggtg 189224


Query: 373    caatcattgaagcaaaattattatgtccacgtgttacatcaacttctggtttaattggag 432
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189225 caatcattgaagcaaaattattatgtccacgtgttacatcaacttctggtttaattggag 189284


Query: 433    ttgataatatcccaaatttaattggtggtgctttattaggtggcggatcttcaggtttgt 492
              |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189285 ttgataatatcccacatttaattggtggtgctttattaggtggcggatcttcaggtttgt 189344


Query: 493    taggtggtttattaggtggaggtagtggtggttttaaaactcaaacccctgtacctaccc 552
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189345 taggtggtttattaggtggaggtagtggtggttttaaaactcaaacccctgtacctaccc 189404


Query: 553    aaccaaatggtggtggtactggtttcattggtggtttcataagtggtggaagtacaaatg 612
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189405 aaccaaatggtggtggtactggtttcattggtggtttcataagtggtggaagtacaaatg 189464


Query: 613    gtggtgtaacaccatctttaactccaactccaacatcgaaaccatcaagtggttttttag 672
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189465 gtggtgtaacaccatctttaactccaactccaacatcgaaaccatcaagtggttttttag 189524


Query: 673    gtggatttataggtggtggtggatcaacaccaacacccgca 713
              |||||||||||||||||||||||||||||||||||||||||
Sbjct: 189525 gtggatttataggtggtggtggatcaacaccaacacccgca 189565

 Score =  272 bits (137), Expect(4) = 0.0
 Identities = 137/137 (100%)
 Strand = Plus / Plus


Query: 175    ctatttagttgataatattgatgtaaagattacttcattatgttcaaaatatagaaactt 234
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189028 ctatttagttgataatattgatgtaaagattacttcattatgttcaaaatatagaaactt 189087


Query: 235    ttgttatcctgaattgtttaataaagatgggattccagttaataaaggtataattattat 294
              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189088 ttgttatcctgaattgtttaataaagatgggattccagttaataaaggtataattattat 189147


Query: 295    ggatcaagataatatgg 311
              |||||||||||||||||
Sbjct: 189148 ggatcaagataatatgg 189164

 Score =  143 bits (72), Expect(4) = 0.0
 Identities = 74/75 (98%)
 Strand = Plus / Plus


Query: 777    gtatctagtttcttgggtggnttatttggtggttcaacaactggtacaacacaacctatt 836
              |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 189629 gtatctagtttcttgggtggtttatttggtggttcaacaactggtacaacacaacctatt 189688


Query: 837    caaacaccttcacca 851
              |||||||||||||||
Sbjct: 189689 caaacaccttcacca 189703

 Score =  103 bits (52), Expect(4) = 0.0
 Identities = 52/52 (100%)
 Strand = Plus / Plus


Query: 1      tcaagaagaaagtgaagttgatgaaataaacagaaataaatttatagttgat 52
              ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 188768 tcaagaagaaagtgaagttgatgaaataaacagaaataaatttatagttgat 188819

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 812,784,237
Number of extensions: 48908428
Number of successful extensions: 3815266
Number of sequences better than 10.0: 86
Length of query: 851
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 827
Effective length of database: 97,308,875,965
Effective search space: 80474440423055
Effective search space used: 80474440423055
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14298-1 (Contig-U14298-1Q) /CSM_Contig/Contig-U14298-1Q.Seq.d
         (851 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116986_70(AC116986|pid:none) Dictyostelium discoideum chromoso...   213   3e-79
AE015927_2299(AE015927|pid:none) Clostridium tetani E88, complet...    48   5e-04
AF449197_1(AF449197|pid:none) Plasmodium berghei cysteine repeat...    38   0.48
AE014188_435(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    37   0.63
(Q09582) RecName: Full=Probable methionine synthase;          EC...    36   1.8
(Q54FQ3) RecName: Full=Probable polyketide synthase 29;         ...    35   2.4
CP001391_130(CP001391|pid:none) Wolbachia sp. wRi, complete geno...    35   2.4
AE014188_398(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   2.4
CP001616_1179(CP001616|pid:none) Tolumonas auensis DSM 9187, com...    35   3.1
AM910993_130(AM910993|pid:none) Plasmodium knowlesi strain H chr...    35   4.1
AL844509_625(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.1
AE014188_214(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    35   4.1
CP000102_112(CP000102|pid:none) Methanosphaera stadtmanae DSM 30...    34   5.4
AL844504_249(AL844504|pid:none) Plasmodium falciparum 3D7 chromo...    34   5.4
CP000976_242(CP000976|pid:none) Borrelia duttonii Ly, complete g...    34   5.4
CP000993_233(CP000993|pid:none) Borrelia recurrentis A1, complet...    34   5.4
CP001083_223(CP001083|pid:none) Clostridium botulinum Ba4 str. 6...    34   7.0
AF078128_1(AF078128|pid:none) Plasmodium knowlesi from Malaysia ...    34   7.0
AE014186_384(AE014186|pid:none) Plasmodium falciparum 3D7 chromo...    34   7.0
AF078130_1(AF078130|pid:none) Plasmodium knowlesi from Malaysia ...    34   7.0
AL844508_86(AL844508|pid:none) Plasmodium falciparum 3D7 chromos...    34   7.0
CU179680_167(CU179680|pid:none) Mycoplasma agalactiae PG2 chromo...    34   7.0
AL844506_50(AL844506|pid:none) Plasmodium falciparum 3D7 chromos...    33   9.1
AM412317_1895(AM412317|pid:none) Clostridium botulinum A str. AT...    33   9.1
CP001581_1984(CP001581|pid:none) Clostridium botulinum A2 str. K...    33   9.1
CP001083_2018(CP001083|pid:none) Clostridium botulinum Ba4 str. ...    33   9.1
CP000728_1861(CP000728|pid:none) Clostridium botulinum F str. La...    33   9.1
CP000962_1913(CP000962|pid:none) Clostridium botulinum A3 str. L...    33   9.1

>AC116986_70(AC116986|pid:none) Dictyostelium discoideum chromosome
           2 map 2234041-2567370 strain AX4, complete sequence.
          Length = 709

 Score =  213 bits (542), Expect(2) = 3e-79
 Identities = 103/103 (100%), Positives = 103/103 (100%)
 Frame = +2

Query: 2   QEESEVDEINRNKFIVDLRNDKNDVSLKLFNKLNEDEKQKYFISRIKNYLTDQNYDLNYL 181
           QEESEVDEINRNKFIVDLRNDKNDVSLKLFNKLNEDEKQKYFISRIKNYLTDQNYDLNYL
Sbjct: 27  QEESEVDEINRNKFIVDLRNDKNDVSLKLFNKLNEDEKQKYFISRIKNYLTDQNYDLNYL 86

Query: 182 VDNIDVKITSLCSKYRNFCYPELFNKDGIPVNKGIIIMDQDNM 310
           VDNIDVKITSLCSKYRNFCYPELFNKDGIPVNKGIIIMDQDNM
Sbjct: 87  VDNIDVKITSLCSKYRNFCYPELFNKDGIPVNKGIIIMDQDNM 129

 Score =  106 bits (265), Expect(2) = 3e-79
 Identities = 57/81 (70%), Positives = 58/81 (71%)
 Frame = +3

Query: 315 ERVQKSIFGLSNLFSGLFGAIIEAKLLCPRVTSTSGLIGVDNIPNLIXXXXXXXXXXXXX 494
           ERVQKSIFGLSNLFSGLFGAIIEAKLLCPRVTSTSGLIGVDNIP+LI
Sbjct: 131 ERVQKSIFGLSNLFSGLFGAIIEAKLLCPRVTSTSGLIGVDNIPHLIGGALLGGGSSGLL 190

Query: 495 XXXXXXXXXXFKTQTPVPTQP 557
                     FKTQTPVPTQP
Sbjct: 191 GGLLGGGSGGFKTQTPVPTQP 211

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 722,903,170
Number of extensions: 10101377
Number of successful extensions: 36654
Number of sequences better than 10.0: 28
Number of HSP's gapped: 36592
Number of HSP's successfully gapped: 29
Length of query: 283
Length of database: 1,051,180,864
Length adjustment: 127
Effective length of query: 156
Effective length of database: 640,137,871
Effective search space: 99861507876
Effective search space used: 99861507876
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.76  gvh: 0.66  alm: 0.35  top: 0.53  tms: 0.00  mit: 0.21  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: cytoplasmic
	 28.0 %: nuclear
	 12.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: Golgi
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14298-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 2
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0