| Contig-U14279-1 |
| Contig ID |
Contig-U14279-1 |
| Contig update |
2002.12.18 |
| Contig sequence |
 |
| Gap |
no gap |
| Contig length |
113 |
| Chromosome number (1..6, M) |
3 |
| Chromosome length |
6358359 |
| Start point |
3841642 |
| End point |
3841745 |
| Strand (PLUS/MINUS) |
PLUS |
| Number of clones |
1 |
| Number of EST |
1 |
| Link to clone list |
U14279 |
| List of clone(s) |
|
| Translated Amino Acid sequence |
|
| Translated Amino Acid sequence (All Frames) |
|
| own update |
2004. 6.10 |
| Homology vs CSM-cDNA |
|
| dna update |
2008.12.20 |
| Homology vs DNA |
Query= Contig-U14279-1 (Contig-U14279-1Q) /CSM_Contig/Contig-U14279-1Q.Seq.d
(113 letters)
Database: ddbj_A
92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value N
(BJ364133) Dictyostelium discoideum cDNA clone:ddc30k04, 5' ... 200 6e-48 1
(EW967860) LS_13_N05_T7 Headlice composite library with all ... 48 0.057 1
(AL353771) Human DNA sequence from clone RP4-677H15 on chrom... 44 0.90 1
(AC019213) Homo sapiens chromosome 1 clone RP11-465H9, WORKI... 44 0.90 1
(DU914919) 326417 Tomato EcoRI BAC Library Solanum lycopersi... 44 0.90 1
(FG223257) Aats00527 Antheraea assama fifth instar larval te... 44 0.90 1
(AC208296) Glycine tomentella clone gtd1-66e2, WORKING DRAFT... 36 1.4 4
(AC069593) Homo sapiens chromosome 4 clone RP11-632F23 map 4... 32 1.5 5
(CU457598) Pig DNA sequence from clone CH242-113C22 on chrom... 32 1.8 2
(AC232169) Mustela putorius furo clone CH237-332K5, WORKING ... 34 1.8 2
(AC226873) Monodelphis domestica clone VMRC18-703B23, WORKIN... 34 1.8 2
(AP010537) Lotus japonicus genomic DNA, chromosome 5, clone:... 38 1.9 2
(AC211280) Oryza glaberrima clone OG_BBa0001N06, *** SEQUENC... 36 2.1 2
(AL592104) Human DNA sequence from clone RP11-428K13 on chro... 42 2.2 2
(DU886422) 391099 Tomato HindIII BAC Library Solanum lycoper... 34 2.4 2
(DU071547) 62483 Tomato HindIII BAC Library Solanum lycopers... 34 2.4 2
(CZ953821) 266189 Tomato EcoRI BAC Library Solanum lycopersi... 34 2.4 2
(FH152887) CHO_OF3064xd06f1.ab1 CHO_OF3 Nicotiana tabacum ge... 34 2.4 2
(AZ540983) ENTEI84TR Entamoeba histolytica Sheared DNA Entam... 30 2.5 3
(AC213139) Oryza glaberrima clone OG_BBa0067C20, *** SEQUENC... 36 2.6 2
(CR847969) Zebrafish DNA sequence from clone CH211-264G11 in... 42 2.7 3
(CU856419) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 38 2.8 2
(AC215704) Homo sapiens FOSMID clone ABC11-49345800A3 from c... 36 3.0 2
(AL355524) Human DNA sequence *** SEQUENCING CANCELLED *** f... 42 3.2 2
(AC150647) Medicago truncatula chromosome 8 clone mth2-65p21... 30 3.4 5
(AC006844) Caenorhabditis elegans clone Y108G3Y, *** SEQUENC... 42 3.5 3
(AC219183) Oryza officinalis clone OO__Ba0063C12, *** SEQUEN... 40 3.5 2
(CT573348) Zebrafish DNA sequence from clone CH73-285F4 in l... 42 3.5 1
(BX004824) Zebrafish DNA sequence from clone CH211-57I17 in ... 42 3.5 1
(AC102672) Mus musculus chromosome 14, clone RP23-181E7, com... 42 3.5 1
(AM427846) Vitis vinifera contig VV78X015750.4, whole genome... 42 3.5 1
(Z95619) Caenorhabditis elegans Fosmid H21P03. 42 3.5 1
(Z82280) Caenorhabditis elegans Cosmid R05A10. 42 3.5 1
(AC046131) Homo sapiens 12 BAC RP11-847A19 (Roswell Park Can... 42 3.5 1
(Z99944) Caenorhabditis elegans DNA *** SEQUENCING IN PROGRE... 42 3.5 1
(CU914226) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.5 1
(CU856579) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 42 3.5 1
(AC073872) Homo sapiens chromosome 12 clone RP11-546D23, WOR... 42 3.5 1
(CR855272) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 42 3.5 1
(BX005303) Zebrafish DNA sequence *** SEQUENCING CANCELLED *... 42 3.5 1
(AP010365) Lotus japonicus genomic DNA, chromosome 3, clone:... 42 3.5 1
(AC180537) Strongylocentrotus purpuratus clone R3-3098K7, WO... 42 3.5 1
(AC175480) Bos taurus clone CH240-528C1, WORKING DRAFT SEQUE... 42 3.5 1
(AC168779) Strongylocentrotus purpuratus clone R3-13L9, WORK... 42 3.5 1
(EK314374) 1095462408051 Global-Ocean-Sampling_GS-31-01-01-1... 42 3.5 1
(CI282509) Oryza sativa Japonica Group cDNA, clone: 083-M143... 42 3.5 1
(BG800249) 2114-52 Mouse E14.5 retina lambda ZAP II Library ... 42 3.5 1
(FD460819) LARVH72TR Haematobia irritans 1st Instar Larvae H... 42 3.5 1
(FD460818) LARVH72TF Haematobia irritans 1st Instar Larvae H... 42 3.5 1
(EW966307) SFHL_01_A10_T7 Headlice composite library with al... 42 3.5 1
(ET865048) CHO_OF322xb18r1.ab1 CHO_OF Nicotiana tabacum geno... 38 4.0 2
(BX928751) Zebrafish DNA sequence from clone CH211-148P7 in ... 38 4.1 3
(AL606806) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 38 4.5 3
(AC219119) Myotis lucifugus clone CH235-253I10, WORKING DRAF... 34 4.7 3
(AC200969) Strongylocentrotus purpuratus clone R3-1117J19, W... 30 5.0 4
(Z99290) Human DNA sequence from clone RP1-299C21 on chromos... 36 5.1 2
(AC174378) Medicago truncatula chromosome 8 clone mth2-57m5,... 30 6.0 5
(BX649534) Zebrafish DNA sequence from clone DKEY-31F5 in li... 34 6.2 3
(AC219120) Myotis lucifugus clone CH235-261K7, WORKING DRAFT... 34 6.3 3
(AC008534) Homo sapiens chromosome 5 clone CTC-484P3, comple... 30 6.4 2
(AC152310) Bos taurus clone CH240-2C24, WORKING DRAFT SEQUEN... 32 6.4 2
(AX339170) Sequence 37 from Patent WO0176451. 36 6.5 2
(AC012312) Homo sapiens chromosome 5 clone CTC-558O19, compl... 30 6.5 2
(CU862050) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 30 6.5 2
(AC011205) Homo sapiens clone RP11-114K6, WORKING DRAFT SEQU... 30 6.6 2
(AC182075) Bos taurus clone CH240-398J21, WORKING DRAFT SEQU... 30 6.6 2
(AC008932) Homo sapiens chromosome 5 clone CTD-2296H2, WORKI... 30 6.7 2
(CU633985) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS... 34 7.3 3
(BX936442) Zebrafish DNA sequence from clone DKEY-101D4 in l... 36 7.5 3
(AC130560) Rattus norvegicus clone CH230-59D10, *** SEQUENCI... 36 7.8 3
(DE560646) Bombyx mori genomic DNA, Fosmid clone:GBMFno200_p... 36 8.3 2
(AC151449) Dasypus novemcinctus clone VMRC5-212K2, WORKING D... 34 8.3 4
(AP007876) Lotus japonicus genomic DNA, chromosome 5, clone:... 32 8.6 4
(AL147635) Anopheles gambiae GSS SP6 end of clone 14K17 of N... 30 8.7 2
(CT438962) Sus scrofa genomic clone CH242-404K6, genomic sur... 30 8.8 2
(EH179468) LB01750.CR_F16 GC_BGC-17 Bos taurus cDNA clone IM... 30 8.8 2
(EX752898) RR1CJ55JQ RR1(CS) Raphanus raphanistrum subsp. ma... 30 8.9 2
(AC097184) Rattus norvegicus clone CH230-112K9, *** SEQUENCI... 34 9.4 3
(BM430066) 1Duo29B5.ab1 Bos taurus Duodenum #1 library Bos t... 30 9.6 2
(AC100265) Mus musculus clone RP23-66M6, LOW-PASS SEQUENCE S... 34 10.0 3
>(BJ364133) Dictyostelium discoideum cDNA clone:ddc30k04, 5' end,
single read.
Length = 104
Score = 200 bits (101), Expect = 6e-48
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 tgattgatcattttattattaaaggngtaaaactttcaacacaaattgatatgttttgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgattgatcattttattattaaaggngtaaaactttcaacacaaattgatatgttttgtc 60
Query: 61 aaatatttaaaattcaagaagacccaattaaatactctttacta 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 aaatatttaaaattcaagaagacccaattaaatactctttacta 104
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 164,199,313
Number of extensions: 11682111
Number of successful extensions: 3493299
Number of sequences better than 10.0: 82
Length of query: 113
Length of database: 95,242,211,685
Length adjustment: 22
Effective length of query: 91
Effective length of database: 93,199,600,587
Effective search space: 8481163653417
Effective search space used: 8481163653417
X1: 11 (21.8 bits)
S2: 20 (40.1 bits)
|
| protein update |
2009. 7.10 |
| Homology vs Protein |
|
| PSORT |
|
| VS (DIR, S) |
0 |
| VH (FL, L) |
0 |
| VF (FL, S) |
0 |
| AH (FL, L) |
0 |
| AF (FL, S) |
0 |
| SL (DIR, L) |
0 |
| SS (DIR, S) |
0 |
| SH (FL, L) |
0 |
| SF (FL, S) |
0 |
| CH (FL, L) |
1 |
| CF (FL, S) |
0 |
| FCL (DIR, L) |
0 |
| FC (DIR, S) |
0 |
| FC-IC (SUB) |
0 |