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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14277-1
Contig ID Contig-U14277-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Contig-U14277-1Q.Seq.d
ACCGATCAGTAAATACAATTGTTAACACATATAGAAATTTTAAAATTTTA
TCTTTATTTCTAAAAAAAAATAACAATAACATATTGATAAAGTAAAATAT
GGTTAACCCTCAAGTAATTGGTTATATTGGTGCAGCAGTTGCATCATTAT
TTTTTGGTTCAAATTATGTTCCAGTAAAGAATTATCCAACAGGTAATGGT
TTAGCATTTACATGGGTAATGAGTGTTGGTACATTAGTAGTTGCATATTG
TGCAATGTTTATATCAAAAGATTATATATTTGACCCATGGGGATTATTAG
GTGGTACATTATGGTCAATTGGTAATTTTTGCGTTATTCCAATTGTAAAA
ACCATTGGTATTGGTCTTGGTTTATTGTTATGGTGTTGTTCAAGTATTAT
CACAGGTTATTTCACAGGTAAATTCGGATGGTTTGGAATAGACAAACAAA
AGGTATCACATCCAGCATTAAATTGGATTGGTTTCGCATGTATTGTAGCG
GCTGTAATTTTCTTCTTTTTCATTGAACCTACAATCGAAGAGAAAGACGA
ACATTCCTACTCATCAATTGTAGACGACTCGGAAATTGGTAATAACGGAA
TCGACAACAATGGCTATAACTCAATTAATAACAACAACAATAATGGAAAT
AATAAACGTAGAAGTGGGGCATTTAATAAGCAGCCAAAGAAATCCATTTT
TGAGAGAATGCCACCACCCATATAATACAATATTGGGCATAGTTTTATCA
GTTTTCTCTGGTATTATGTATGGTGTTAATATGGTACCAATGCAATTATG
GAAACAAAGTAACGTGGATGCATCACCACTATCATTTGTATTTTGTCATT
TCTCTGGTATCTTTTTAGCAAATACCGCTGTGTTTATAGTTTATTCAATT
ATTGTACGTCCACCACAAATTTTCCCACAAACTATTTTCCCTTCATTTTT
CTCTGGTTTACTTTGGGGTATTGCAAATGTTGGTCTAATGGTTGCAACTC
AAAACTTGGGTTATACAATTGGTTTTCCAATGGGTTCTGGTGGTCCAATG
ATTGTATCTTCACTTTGGAGTGTTTTTTATTTCCGTGAAATTCAAGGTGT
AAAAAATTTATTAATTTTATTAATATCATTTATATTGCCTTGGTGCTGGT
ATTACAATTTTAGCTTTATGCTCACTAATAAATAATAATAGTAATAATAA
TAATAATAAAAATAAAATAAAACT
Gap no gap
Contig length 1224
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 3420751
End point 3421872
Strand (PLUS/MINUS) PLUS
Number of clones 12
Number of EST 15
Link to clone list U14277
List of clone(s) 

est1=SFI147F,-16,541
est2=CHD829E,1,1222
est3=VFM619E,1,1183
est4=VFJ672E,5,1180
est5=SFL109E,16,1185
est6=VSJ867F,44,540
est7=VFJ104Z,484,1051
est8=SFI147Z,524,1219
est9=VFJ877Z,528,1173
est10=VSC322Z,577,1181
est11=VFD665F,630,1188
est12=VFD665Z,630,1069
est13=VSJ867Z,636,1223
est14=VSC779Z,823,1178
est15=SFB201Z,1095,1202
Translated Amino Acid sequence 
rsvntivntyrnfkilslflkknnnnilik*NMVNPQVIGYIGAAVASLFFGSNYVPVKN
YPTGNGLAFTWVMSVGTLVVAYCAMFISKDYIFDPWGLLGGTLWSIGNFCVIPIVKTIGI
GLGLLLWCCSSIITGYFTGKFGWFGIDKQKVSHPALNWIGFACIVAAVIFFFFIEPTIEE
KDEHSYSSIVDDSEIGNNGIDNNGYNSINNNNNNGNNKRRSGAFNKQPKKSIFERMPPPI
*ynighsfisflwyyvwc*ygtnaimetk*rgcittiicilsflwylfskyrcvyslfny
ctsttnfptnyfpfiflwftlgyckcwsngcnsklglynwfsngfwwsndciftlecflf
p*nsrckkfinfiniiyialvlvlqf*lyah**iiiviiiiikik*n
Translated Amino Acid sequence (All Frames) 
Frame A:
tdq*iqllthieilkfylyf*kkitity**skiwltlk*lvilvqqlhhyflvqimfq*r
iiqqvmv*hlhg**vlvh**lhivqclyqkiiylthgdy*vvhygqlvifalfql*kplv
lvlvycygvvqvlsqvisqvnsdgle*tnkryhiqh*iglvshvl*rl*fssfslnlqsk
rktnipthql*ttrklvitesttmaitqlitttimeiinvevghlissqrnpflrechhp
yntilgivlsvfsgimygvnmvpmqlwkqsnvdasplsfvfchfsgiflantavfivysi
ivrppqifpqtifpsffsgllwgianvglmvatqnlgytigfpmgsggpmivsslwsvfy
freiqgvknllillisfilpwcwyynfsfmltnk*********k*nkt


Frame B:
piskync*hi*kf*nfifiskkk*q*hidkvkyg*pssnwlywcssciiifwfklcsske
lsnr*wfsiymgnecwyisscilcnvyikrlyi*pmgiirwyimvnw*flrysncknhwy
wswfivmvlfkyyhrlfhr*irmvwnrqtkgitssikldwfrmycsgcnfllfh*tynrr
errtfllincrrlgnw**rnrqqwl*ln**qqq*wk**t*kwgi**aakeihf*enatth
iiqywa*fyqfslvlcmvliwyqcnygnkvtwmhhhyhlyfvislvsf*qiplcl*fiql
lyvhhkfshklfslhfslvyfgvlqmlv*wlqlktwviqlvfqwvlvvq*lylhfgvffi
svkfkv*kiy*fy*yhlyclgagitilalcslinnnsnnnnnknkik


Frame C:
rsvntivntyrnfkilslflkknnnnilik*NMVNPQVIGYIGAAVASLFFGSNYVPVKN
YPTGNGLAFTWVMSVGTLVVAYCAMFISKDYIFDPWGLLGGTLWSIGNFCVIPIVKTIGI
GLGLLLWCCSSIITGYFTGKFGWFGIDKQKVSHPALNWIGFACIVAAVIFFFFIEPTIEE
KDEHSYSSIVDDSEIGNNGIDNNGYNSINNNNNNGNNKRRSGAFNKQPKKSIFERMPPPI
*ynighsfisflwyyvwc*ygtnaimetk*rgcittiicilsflwylfskyrcvyslfny
ctsttnfptnyfpfiflwftlgyckcwsngcnsklglynwfsngfwwsndciftlecflf
p*nsrckkfinfiniiyialvlvlqf*lyah**iiiviiiiikik*n
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14277-1 (Contig-U14277-1Q)
/CSM_Contig/Contig-U14277-1Q.Seq.d
         (1224 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Conti...  2276  0.0
Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Conti...    42  0.001
Contig-U00945-1 (Contig-U00945-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U00653-1 (Contig-U00653-1Q) /CSM_Contig/Conti...    40  0.006
Contig-U14434-1 (Contig-U14434-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11936-1 (Contig-U11936-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U11683-1 (Contig-U11683-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U10711-1 (Contig-U10711-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U03065-1 (Contig-U03065-1Q) /CSM_Contig/Conti...    38  0.022
Contig-U00542-1 (Contig-U00542-1Q) /CSM_Contig/Conti...    38  0.022

>Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Contig-U14277-1Q.Seq.d
          Length = 1224

 Score = 2276 bits (1148), Expect = 0.0
 Identities = 1166/1175 (99%)
 Strand = Plus / Plus

                                                                        
Query: 1    accgatcagtaaatacaattgttaacacatatagaaattttaaaattttatctttatttc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1    accgatcagtaaatacaattgttaacacatatagaaattttaaaattttatctttatttc 60

                                                                        
Query: 61   tnnnnnnnnntaacaataacatattgataaagtaaaatatggttaaccctcaagtaattg 120
            |         ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61   taaaaaaaaataacaataacatattgataaagtaaaatatggttaaccctcaagtaattg 120

                                                                        
Query: 121  gttatattggtgcagcagttgcatcattattttttggttcaaattatgttccagtaaaga 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121  gttatattggtgcagcagttgcatcattattttttggttcaaattatgttccagtaaaga 180

                                                                        
Query: 181  attatccaacaggtaatggtttagcatttacatgggtaatgagtgttggtacattagtag 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181  attatccaacaggtaatggtttagcatttacatgggtaatgagtgttggtacattagtag 240

                                                                        
Query: 241  ttgcatattgtgcaatgtttatatcaaaagattatatatttgacccatggggattattag 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241  ttgcatattgtgcaatgtttatatcaaaagattatatatttgacccatggggattattag 300

                                                                        
Query: 301  gtggtacattatggtcaattggtaatttttgcgttattccaattgtaaaaaccattggta 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301  gtggtacattatggtcaattggtaatttttgcgttattccaattgtaaaaaccattggta 360

                                                                        
Query: 361  ttggtcttggtttattgttatggtgttgttcaagtattatcacaggttatttcacaggta 420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361  ttggtcttggtttattgttatggtgttgttcaagtattatcacaggttatttcacaggta 420

                                                                        
Query: 421  aattcggatggtttggaatagacaaacaaaaggtatcacatccagcattaaattggattg 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421  aattcggatggtttggaatagacaaacaaaaggtatcacatccagcattaaattggattg 480

                                                                        
Query: 481  gtttcgcatgtattgtagcggctgtaattttcttctttttcattgaacctacaatcgaag 540
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481  gtttcgcatgtattgtagcggctgtaattttcttctttttcattgaacctacaatcgaag 540

                                                                        
Query: 541  agaaagacgaacattcctactcatcaattgtagacgactcggaaattggtaataacggaa 600
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541  agaaagacgaacattcctactcatcaattgtagacgactcggaaattggtaataacggaa 600

                                                                        
Query: 601  tcgacaacaatggctataactcaattaataacaacaacaataatggaaataataaacgta 660
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601  tcgacaacaatggctataactcaattaataacaacaacaataatggaaataataaacgta 660

                                                                        
Query: 661  gaagtggggcatttaataagcagccaaagaaatccatttttgagagaatgccaccaccca 720
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 661  gaagtggggcatttaataagcagccaaagaaatccatttttgagagaatgccaccaccca 720

                                                                        
Query: 721  tataatacaatattgggcatagttttatcagttttctctggtattatgtatggtgttaat 780
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 721  tataatacaatattgggcatagttttatcagttttctctggtattatgtatggtgttaat 780

                                                                        
Query: 781  atggtaccaatgcaattatggaaacaaagtaacgtggatgcatcaccactatcatttgta 840
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 781  atggtaccaatgcaattatggaaacaaagtaacgtggatgcatcaccactatcatttgta 840

                                                                        
Query: 841  ttttgtcatttctctggtatctttttagcaaataccgctgtgtttatagtttattcaatt 900
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 841  ttttgtcatttctctggtatctttttagcaaataccgctgtgtttatagtttattcaatt 900

                                                                        
Query: 901  attgtacgtccaccacaaattttcccacaaactattttcccttcatttttctctggttta 960
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 901  attgtacgtccaccacaaattttcccacaaactattttcccttcatttttctctggttta 960

                                                                        
Query: 961  ctttggggtattgcaaatgttggtctaatggttgcaactcaaaacttgggttatacaatt 1020
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 961  ctttggggtattgcaaatgttggtctaatggttgcaactcaaaacttgggttatacaatt 1020

                                                                        
Query: 1021 ggttttccaatgggttctggtggtccaatgattgtatcttcactttggagtgttttttat 1080
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1021 ggttttccaatgggttctggtggtccaatgattgtatcttcactttggagtgttttttat 1080

                                                                        
Query: 1081 ttccgtgaaattcaaggtgtaaaaaatttattaattttattaatatcatttatattgcct 1140
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1081 ttccgtgaaattcaaggtgtaaaaaatttattaattttattaatatcatttatattgcct 1140

                                               
Query: 1141 tggtgctggtattacaattttagctttatgctcac 1175
            |||||||||||||||||||||||||||||||||||
Sbjct: 1141 tggtgctggtattacaattttagctttatgctcac 1175


>Contig-U01710-1 (Contig-U01710-1Q) /CSM_Contig/Contig-U01710-1Q.Seq.d
          Length = 910

 Score = 42.1 bits (21), Expect = 0.001
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 1108 ttattaattttattaatatca 1128
            |||||||||||||||||||||
Sbjct: 827  ttattaattttattaatatca 847


>Contig-U00945-1 (Contig-U00945-1Q) /CSM_Contig/Contig-U00945-1Q.Seq.d
          Length = 1055

 Score = 40.1 bits (20), Expect = 0.006
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 625 ttaataacaacaacaataat 644
           ||||||||||||||||||||
Sbjct: 956 ttaataacaacaacaataat 975


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 23,530
Number of Sequences: 6905
Number of extensions: 23530
Number of successful extensions: 2481
Number of sequences better than 10.0: 386
length of query: 1224
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1208
effective length of database: 5,564,391
effective search space: 6721784328
effective search space used: 6721784328
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.20
Homology vs DNA 
Query= Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Contig-U14277-1Q.Seq.d
         (1224 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ401354) Dictyostelium discoideum cDNA clone:dds23a03, 3' ...  1334   0.0    1
(BJ416636) Dictyostelium discoideum cDNA clone:ddv26e06, 5' ...  1104   0.0    2
(BJ414875) Dictyostelium discoideum cDNA clone:ddv20o18, 5' ...  1082   0.0    2
(BJ363976) Dictyostelium discoideum cDNA clone:ddc29j08, 5' ...  1005   0.0    2
(BJ329530) Dictyostelium discoideum cDNA clone:dda25g12, 5' ...   993   0.0    2
(BJ435095) Dictyostelium discoideum cDNA clone:ddv26e06, 3' ...   831   0.0    3
(BJ433129) Dictyostelium discoideum cDNA clone:ddv20j20, 3' ...   831   0.0    2
(BJ433074) Dictyostelium discoideum cDNA clone:ddv20o18, 3' ...   831   0.0    3
(BJ402588) Dictyostelium discoideum cDNA clone:dds17m11, 3' ...   831   0.0    3
(BJ376644) Dictyostelium discoideum cDNA clone:ddc29j08, 3' ...   831   0.0    3
(BJ346864) Dictyostelium discoideum cDNA clone:dda25g12, 3' ...   831   0.0    3
(BJ390587) Dictyostelium discoideum cDNA clone:dds23a03, 5' ...   620   0.0    3
(AU270603) Dictyostelium discoideum vegetative cDNA clone:VS...   993   0.0    2
(BJ389076) Dictyostelium discoideum cDNA clone:dds17m11, 5' ...   934   0.0    2
(AU270602) Dictyostelium discoideum vegetative cDNA clone:VS...   932   0.0    2
(BJ398894) Dictyostelium discoideum cDNA clone:dds3a02, 3' e...   155   5e-33  1
(BJ412446) Dictyostelium discoideum cDNA clone:ddv8a18, 5' e...    78   7e-15  2
(AU262478) Dictyostelium discoideum vegetative cDNA clone:VS...    78   7e-15  2
(AU262785) Dictyostelium discoideum vegetative cDNA clone:VS...    78   9e-10  1
(CT573450) Zebrafish DNA sequence from clone DKEY-210E6 in l...    48   0.001  3
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    38   0.002  10
(BX927282) Zebrafish DNA sequence from clone DKEY-49O11 in l...    56   0.003  1
(AC134884) Homo sapiens clone RP11-6B4, *** SEQUENCING IN PR...    34   0.006  7
(AE014837) Plasmodium falciparum 3D7 chromosome 11 section 2...    38   0.012  12
(AC174870) Strongylocentrotus purpuratus clone R3-3112M23, W...    44   0.033  7
(AC004688) Plasmodium falciparum chromosome 12 clone 3D7, **...    32   0.037  10
(AC115598) Dictyostelium discoideum chromosome 2 map 581427-...    52   0.051  1
(FH922056) CHO_NF2012xi02f1.ab1 CHO_NF2 Nicotiana tabacum ge...    52   0.051  1
(FH915773) CHO_ONF003xd04f2.ab1 CHO_ONF Nicotiana tabacum ge...    52   0.051  1
(EJ225155) 1092351400495 Global-Ocean-Sampling_GS-27-01-01-1...    52   0.051  1
(ED396349) AUAC-aaq47h03.b1 Ascaris suum whole genome shotgu...    52   0.051  1
(DY684114) TTEAS06THB Tetrahymena thermophila EST library, c...    52   0.051  1
(DY682676) TTEA274T1V Tetrahymena thermophila EST library, c...    52   0.051  1
(DY681994) TTEA184T1V Tetrahymena thermophila EST library, c...    52   0.051  1
(DY681698) TTEA174TV Tetrahymena thermophila EST library, co...    52   0.051  1
(DY681129) TTEA084T1V Tetrahymena thermophila EST library, c...    52   0.051  1
(DY681023) TTEA084TV Tetrahymena thermophila EST library, co...    52   0.051  1
(CX592006) TTE00018285 Amplicon Express - Conjugative Form T...    52   0.051  1
(CX591244) TTE00023254 Amplicon Express - Conjugative Form T...    52   0.051  1
(CX577915) TTE00024912 Amplicon Express - Conjugative Form T...    52   0.051  1
(FF577387) TTECU11THB Tetrahymena thermophila conjugation cD...    52   0.051  1
(FF572536) TTECB50THB Tetrahymena thermophila conjugation cD...    52   0.051  1
(AC117072) Dictyostelium discoideum chromosome 2 map 3879572...    36   0.054  8
(AC134946) Rattus norvegicus clone CH230-276M20, *** SEQUENC...    40   0.095  5
(BX005227) Zebrafish DNA sequence from clone CH211-286C23 in...    50   0.20   1
(AL954173) Zebrafish DNA sequence from clone CH211-272N13.         50   0.20   1
(AC133754) Rattus norvegicus clone CH230-4H11, *** SEQUENCIN...    50   0.20   1
(AC116263) Rattus norvegicus clone CH230-260D7, *** SEQUENCI...    50   0.20   1
(FH663277) CHO_OF5006xa11r1.ab1 CHO_OF5 Nicotiana tabacum ge...    50   0.20   1
(EK165641) 1095458050795 Global-Ocean-Sampling_GS-31-01-01-1...    50   0.20   1
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    50   0.20   1
(CR388004) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   0.21   5
(EK039189) 1092959499294 Global-Ocean-Sampling_GS-31-01-01-1...    44   0.21   2
(EJ416169) 1093012184036 Global-Ocean-Sampling_GS-28-01-01-1...    38   0.22   2
(DE147205) Bombyx mori genomic DNA, Fosmid clone:RO0286-I17_R.     46   0.22   2
(BX908742) Zebrafish DNA sequence from clone DKEY-246G23 in ...    42   0.24   9
(DQ471525) Drosophila anceps NADH dehydrogenase subunit 2 (N...    46   0.29   2
(CF370251) rg62c10.y1 Meloidogyne hapla female SMART pGEM Me...    38   0.33   2
(CR354556) Zebrafish DNA sequence from clone DKEY-100J22 in ...    42   0.33   4
(AM461944) Vitis vinifera contig VV78X085418.7, whole genome...    42   0.41   4
(AC169889) Macaca mulatta clone CH250-281B1, WORKING DRAFT S...    42   0.41   5
(AC170738) Sorex araneus clone SA_Ba-503H16, complete sequence.    34   0.45   2
(CF369488) rg60d10.y1 Meloidogyne hapla female SMART pGEM Me...    38   0.51   2
(Z98551) Plasmodium falciparum MAL3P6.                             38   0.60   8
(AC152910) Loxodonta africana clone VMRC15-373K24, WORKING D...    44   0.60   3
(CF369474) rg60c03.y1 Meloidogyne hapla female SMART pGEM Me...    38   0.62   2
(AL929355) Plasmodium falciparum strain 3D7, chromosome 9; s...    36   0.64   9
(CR327976) mte1-56H10RM1 BAC end, cultivar Jemalong A17 of M...    38   0.66   2
(AX348911) Sequence 369 from Patent WO0202807.                     36   0.66   4
(AM469149) Vitis vinifera, whole genome shotgun sequence, co...    38   0.73   4
(AC153112) Loxodonta africana clone VMRC15-66L3, WORKING DRA...    44   0.76   4
(AC192779) Gallus gallus BAC clone CH261-167F2 from chromoso...    48   0.79   1
(AC026478) Mus musculus strain C57BL6/J chromosome 5 clone R...    48   0.79   1
(AL161564) Arabidopsis thaliana DNA chromosome 4, contig fra...    48   0.79   1
(AL049483) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    48   0.79   1
(AL049480) Arabidopsis thaliana DNA chromosome 4, BAC clone ...    48   0.79   1
(AC226726) Solanum lycopersicum chromosome 6 clone C06HBa005...    48   0.79   1
(AC169626) Medicago truncatula clone mth2-180d3, complete se...    48   0.79   1
(AX489228) Sequence 6528 from Patent WO02053728.                   48   0.79   1
(AR552863) Sequence 7994 from patent US 6747137.                   48   0.79   1
(AC112570) Rattus norvegicus clone CH230-174F11, *** SEQUENC...    48   0.79   1
(AZ680776) ENTHT72TF Entamoeba histolytica Sheared DNA Entam...    48   0.79   1
(AZ668726) ENTGK24TF Entamoeba histolytica Sheared DNA Entam...    48   0.79   1
(AZ550745) ENTDG35TR Entamoeba histolytica Sheared DNA Entam...    48   0.79   1
(EI383381) POTA333TF Solanum tuberosum RHPOTKEY BAC ends Sol...    48   0.79   1
(DU851663) 51362 Tomato HindIII BAC Library Solanum lycopers...    48   0.79   1
(AJ551944) Arabidopsis thaliana T-DNA flanking sequence, lef...    48   0.79   1
(DH138103) Oryzias latipes Fosmid clone:GOLWFno364_k07, forw...    48   0.79   1
(CU132108) Equus caballus GSS, BAC clone CH241-253A4, T7 end...    48   0.79   1
(CN853573) Ha_mx0_14f11_SP6 Lobster Multiple Tissues, Normal...    48   0.79   1
(AL845362) Zebrafish DNA sequence from clone CH211-142H2 in ...    38   1.1    7
(CF370772) rg53g01.y1 Meloidogyne hapla female SMART pGEM Me...    36   1.1    2
(CN194144) rh03a08.y1 Meloidogyne hapla female SMART pGEM Me...    36   1.2    2
(CT027675) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    40   1.2    5
(CN194056) rh01g11.y1 Meloidogyne hapla female SMART pGEM Me...    36   1.2    2
(AC226511) Solanum lycopersicum chromosome 2 clone C02HBa017...    38   1.2    6
(CF370736) rg53b06.y1 Meloidogyne hapla female SMART pGEM Me...    36   1.2    2
(CF370743) rg53c08.y1 Meloidogyne hapla female SMART pGEM Me...    36   1.2    2
(AC174340) Medicago truncatula clone mth2-161g1, complete se...    38   1.3    4
(AL844507) Plasmodium falciparum chromosome 8.                     36   1.3    13

>(BJ401354) Dictyostelium discoideum cDNA clone:dds23a03, 3' end,
            single read.
          Length = 718

 Score = 1334 bits (673), Expect = 0.0
 Identities = 673/673 (100%)
 Strand = Plus / Minus


Query: 464  agcattaaattggattggtttcgcatgtattgtagcggctgtaattttcttctttttcat 523
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716  agcattaaattggattggtttcgcatgtattgtagcggctgtaattttcttctttttcat 657


Query: 524  tgaacctacaatcgaagagaaagacgaacattcctactcatcaattgtagacgactcgga 583
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656  tgaacctacaatcgaagagaaagacgaacattcctactcatcaattgtagacgactcgga 597


Query: 584  aattggtaataacggaatcgacaacaatggctataactcaattaataacaacaacaataa 643
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596  aattggtaataacggaatcgacaacaatggctataactcaattaataacaacaacaataa 537


Query: 644  tggaaataataaacgtagaagtggggcatttaataagcagccaaagaaatccatttttga 703
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536  tggaaataataaacgtagaagtggggcatttaataagcagccaaagaaatccatttttga 477


Query: 704  gagaatgccaccacccatataatacaatattgggcatagttttatcagttttctctggta 763
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476  gagaatgccaccacccatataatacaatattgggcatagttttatcagttttctctggta 417


Query: 764  ttatgtatggtgttaatatggtaccaatgcaattatggaaacaaagtaacgtggatgcat 823
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416  ttatgtatggtgttaatatggtaccaatgcaattatggaaacaaagtaacgtggatgcat 357


Query: 824  caccactatcatttgtattttgtcatttctctggtatctttttagcaaataccgctgtgt 883
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356  caccactatcatttgtattttgtcatttctctggtatctttttagcaaataccgctgtgt 297


Query: 884  ttatagtttattcaattattgtacgtccaccacaaattttcccacaaactattttccctt 943
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 296  ttatagtttattcaattattgtacgtccaccacaaattttcccacaaactattttccctt 237


Query: 944  catttttctctggtttactttggggtattgcaaatgttggtctaatggttgcaactcaaa 1003
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 236  catttttctctggtttactttggggtattgcaaatgttggtctaatggttgcaactcaaa 177


Query: 1004 acttgggttatacaattggttttccaatgggttctggtggtccaatgattgtatcttcac 1063
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 176  acttgggttatacaattggttttccaatgggttctggtggtccaatgattgtatcttcac 117


Query: 1064 tttggagtgttttttatttccgtgaaattcaaggtgtaaaaaatttattaattttattaa 1123
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 116  tttggagtgttttttatttccgtgaaattcaaggtgtaaaaaatttattaattttattaa 57


Query: 1124 tatcatttatatt 1136
            |||||||||||||
Sbjct: 56   tatcatttatatt 44

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,462,881,253
Number of extensions: 92026054
Number of successful extensions: 8157474
Number of sequences better than 10.0: 262
Length of query: 1224
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1200
Effective length of database: 97,308,875,965
Effective search space: 116770651158000
Effective search space used: 116770651158000
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14277-1 (Contig-U14277-1Q) /CSM_Contig/Contig-U14277-1Q.Seq.d
         (1224 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

(Q54V96) RecName: Full=Transmembrane protein 144 homolog 2;           292   e-155
(Q55FV8) RecName: Full=Transmembrane protein 144 homolog 1;           185   3e-45
AX405887_1(AX405887|pid:none) Sequence 302 from Patent WO0222660.     113   2e-23
AK002017_1(AK002017|pid:none) Homo sapiens cDNA FLJ11155 fis, cl...   112   2e-23
(Q7Z5S9) RecName: Full=Transmembrane protein 144;  &BC054487_1(B...   112   2e-23
BC170487_1(BC170487|pid:none) Xenopus laevis hypothetical protei...   111   6e-23
AF003141_1(AF003141|pid:none) Caenorhabditis elegans cosmid W02D...    95   4e-18
CR848486_1(CR848486|pid:none) Xenopus tropicalis finished cDNA, ...    95   6e-18
CP001325_426(CP001325|pid:none) Micromonas sp. RCC299 chromosome...    92   4e-17
AL021571_10(AL021571|pid:none) Caenorhabditis elegans Cosmid T19...    90   1e-16
T24971(T24971)hypothetical protein T19A6.3 - Caenorhabditis eleg...    90   1e-16
Z78066_2(Z78066|pid:none) Caenorhabditis elegans Cosmid W06A7, c...    84   1e-14
T22411(T22411) hypothetical protein F49C12.6 - Caenorhabditis el...    84   1e-14
T26214(T26214)hypothetical protein W06A7.4 - Caenorhabditis eleg...    80   1e-13
CP001141_23(CP001141|pid:none) Phaeodactylum tricornutum CCAP 10...    62   5e-08
EF083871_1(EF083871|pid:none) Picea sitchensis clone WS0272_M15 ...    55   5e-06
AM180355_3097(AM180355|pid:none) Clostridium difficile 630 compl...    52   4e-05
CP000439_1705(CP000439|pid:none) Francisella tularensis subsp. n...    51   1e-04
AE015928_2808(AE015928|pid:none) Bacteroides thetaiotaomicron VP...    50   2e-04
(Q9CDF7) RecName: Full=Putative sugar uptake protein yxfA;  &AE0...    46   0.003
AM406671_2514(AM406671|pid:none) Lactococcus lactis subsp. cremo...    46   0.003
CP000425_2381(CP000425|pid:none) Lactococcus lactis subsp. cremo...    45   0.005
CP000517_1497(CP000517|pid:none) Lactobacillus helveticus DPC 45...    44   0.009
AM946015_1817(AM946015|pid:none) Streptococcus uberis 0140J comp...    42   0.034
CP000813_2092(CP000813|pid:none) Bacillus pumilus SAFR-032, comp...    42   0.045
AP007281_30(AP007281|pid:none) Lactobacillus reuteri JCM 1112 DN...    42   0.058
CP000422_1279(CP000422|pid:none) Pediococcus pentosaceus ATCC 25...    40   0.13
(P61403) RecName: Full=Putative sugar uptake protein BCE_0220;  ...    40   0.22
(Q81VJ7) RecName: Full=Putative sugar uptake protein BA_0200/GBA...    40   0.22
CP000903_183(CP000903|pid:none) Bacillus weihenstephanensis KBAB...    39   0.29
CP001213_935(CP001213|pid:none) Bifidobacterium animalis subsp. ...    39   0.38
CP001213_936(CP001213|pid:none) Bifidobacterium animalis subsp. ...    39   0.38
CP001177_4653(CP001177|pid:none) Bacillus cereus AH187, complete...    39   0.49
CP000227_4427(CP000227|pid:none) Bacillus cereus Q1, complete ge...    39   0.49
AF239736_1(AF239736|pid:none) Vibrio cholerae putative PnuC prot...    38   0.64
(P61402) RecName: Full=Probable glucose uptake protein glcU;  &A...    38   0.65
CP001283_4741(CP001283|pid:none) Bacillus cereus AH820, complete...    38   0.65
CP000903_4435(CP000903|pid:none) Bacillus weihenstephanensis KBA...    38   0.65
CP000140_1611(CP000140|pid:none) Parabacteroides distasonis ATCC...    38   0.65
CP001176_4660(CP001176|pid:none) Bacillus cereus B4264, complete...    37   1.1
CP000764_3225(CP000764|pid:none) Bacillus cereus subsp. cytotoxi...    37   1.1
CP001186_4733(CP001186|pid:none) Bacillus cereus G9842, complete...    37   1.1
(Q816V0) RecName: Full=Probable glucose uptake protein glcU;  &A...    37   1.1
CP000414_415(CP000414|pid:none) Leuconostoc mesenteroides subsp....    37   1.1
AF506981_1(AF506981|pid:none) Borrelia hermsii glycerol-3-phosph...    37   1.4
CP000485_4074(CP000485|pid:none) Bacillus thuringiensis str. Al ...    37   1.4
(Q8DWQ7) RecName: Full=Putative sugar uptake protein SAG2157;  &...    37   1.9
CP000040_339(CP000040|pid:none) Bacillus cereus E33L plasmid pE3...    37   1.9
CP001089_294(CP001089|pid:none) Geobacter lovleyi SZ, complete g...    36   2.4
(P40420) RecName: Full=Glucose uptake protein glcU;  &AL009126_3...    36   2.5
CP001634_15(CP001634|pid:none) Kosmotoga olearia TBF 19.5.1, com...    36   2.5
CP001515_1055(CP001515|pid:none) Bifidobacterium animalis subsp....    36   3.2
CP000425_1226(CP000425|pid:none) Lactococcus lactis subsp. cremo...    35   4.2
AE016796_1276(AE016796|pid:none) Vibrio vulnificus CMCP6 chromos...    35   5.4
AM263198_384(AM263198|pid:none) Listeria welshimeri serovar 6b s...    35   5.5
(Q92EL4) RecName: Full=Putative sugar uptake protein lin0444;  &...    35   5.5
(Q65Q27) RecName: Full=L-rhamnose-proton symporter; AltName: Ful...    35   5.5
CP000033_178(CP000033|pid:none) Lactobacillus acidophilus NCFM, ...    35   7.1
AE016853_1040(AE016853|pid:none) Pseudomonas syringae pv. tomato...    35   7.1
BA000032_1080(BA000032|pid:none) Vibrio parahaemolyticus RIMD 22...    34   9.3
AE006641_1152(AE006641|pid:none) Sulfolobus solfataricus P2, com...    34   9.3
(P0C0G9) RecName: Full=Putative sugar uptake protein SPy_2205/M5...    34   9.3
CP001129_1879(CP001129|pid:none) Streptococcus equi subsp. zooep...    34   9.3
AJ304448_4(AJ304448|pid:none) Treponema maltophilum ORF232, mspA...    34   9.3
FM204884_1947(FM204884|pid:none) Streptococcus equi subsp. zooep...    34   9.3
CP000560_368(CP000560|pid:none) Bacillus amyloliquefaciens FZB42...    34   9.3

>(Q54V96) RecName: Full=Transmembrane protein 144 homolog 2;
          Length = 358

 Score =  292 bits (748), Expect(2) = e-155
 Identities = 148/207 (71%), Positives = 148/207 (71%)
 Frame = +3

Query: 99  MVNPQVIGYIGAAVASLFFGSNYVPVKNYPTGNGLAFTWVMSVGTLVVAYCAMFISKDYI 278
           MVNPQVIGYIGAAVASLFFGSNYVPVKNYPTGNGLAFTWVMSVGTLVVAYCAMFISKDYI
Sbjct: 1   MVNPQVIGYIGAAVASLFFGSNYVPVKNYPTGNGLAFTWVMSVGTLVVAYCAMFISKDYI 60

Query: 279 FDPWGLLGGTLWSIGNFCVIPIVKTXXXXXXXXXXXXXXXXTGYFTGKFGWFGIDKQKVS 458
           FDPWGLLGGTLWSIGNFCVIPIVKT                TGYFTGKFGWFGIDKQKVS
Sbjct: 61  FDPWGLLGGTLWSIGNFCVIPIVKTIGIGLGLLLWCCSSIITGYFTGKFGWFGIDKQKVS 120

Query: 459 HPALNWIGXXXXXXXXXXXXXXXXXXXXKDEHSYSSIVDDSEXXXXXXXXXXXXXXXXXX 638
           HPALNWIG                    KDEHSYSSIVDDSE
Sbjct: 121 HPALNWIGFACIVAAVIFFFFIEPTIEEKDEHSYSSIVDDSEIGNNGIDNNGYNSINNNN 180

Query: 639 XXXXXKRRSGAFNKQPKKSIFERMPPP 719
                KRRSGAFNKQPKKSIFERMPPP
Sbjct: 181 NNGNNKRRSGAFNKQPKKSIFERMPPP 207

 Score =  281 bits (720), Expect(2) = e-155
 Identities = 139/139 (100%), Positives = 139/139 (100%)
 Frame = +1

Query: 718  PYNTILGIVLSVFSGIMYGVNMVPMQLWKQSNVDASPLSFVFCHFSGIFLANTAVFIVYS 897
            PYNTILGIVLSVFSGIMYGVNMVPMQLWKQSNVDASPLSFVFCHFSGIFLANTAVFIVYS
Sbjct: 207  PYNTILGIVLSVFSGIMYGVNMVPMQLWKQSNVDASPLSFVFCHFSGIFLANTAVFIVYS 266

Query: 898  IIVRPPQIFPQTIFPSFFSGLLWGIANVGLMVATQNLGYTIGFPMGSGGPMIVSSLWSVF 1077
            IIVRPPQIFPQTIFPSFFSGLLWGIANVGLMVATQNLGYTIGFPMGSGGPMIVSSLWSVF
Sbjct: 267  IIVRPPQIFPQTIFPSFFSGLLWGIANVGLMVATQNLGYTIGFPMGSGGPMIVSSLWSVF 326

Query: 1078 YFREIQGVKNLLILLISFI 1134
            YFREIQGVKNLLILLISFI
Sbjct: 327  YFREIQGVKNLLILLISFI 345

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 2,055,767,181
Number of extensions: 44302805
Number of successful extensions: 125039
Number of sequences better than 10.0: 66
Number of HSP's gapped: 124941
Number of HSP's successfully gapped: 87
Length of query: 408
Length of database: 1,051,180,864
Length adjustment: 131
Effective length of query: 277
Effective length of database: 627,191,635
Effective search space: 173732082895
Effective search space used: 173732082895
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.94  gvh: 0.54  alm: 0.17  top: 0.40  tms: 0.20  mit: 0.25  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 1.00  m3b: 0.00  m_ : 0.00 

	 32.0 %: endoplasmic reticulum
	 24.0 %: plasma membrane
	 20.0 %: mitochondrial
	  8.0 %: extracellular, including cell wall
	  4.0 %: Golgi
	  4.0 %: vacuolar
	  4.0 %: nuclear
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14277-1 is end
VS (DIR, S) 3
VH (FL, L) 0
VF (FL, S) 5
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 3
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0