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Dicty_cDB
Contig List | Clone List | cDNA Library List
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14276-1
Contig ID Contig-U14276-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Contig-U14276-1Q.Seq.d
ATTCCAACACCTTACCAACTACTAACTTTAAACTTAAAAAAAAAGTTGAT
ATGATTTTAATTTAAATTAGACATATATATATACATATATAACACATATA
ACACATTTAATTTTAAATTCTTTATTCCAACGAAAAAAATAAAAAAAAAC
AAAATAAAAAAAAATAAAAAATAAATNCAAATNCAANGGTTGACTCAAAA
GANGGGGAATNTAAAGAGATTACAAAACTNTTACAATTTTCAAATTTCAA
AGAAATTGATGAAGATTTTCAAAAGTTTATAAATAAAAACCACNCATTCN
CAAGNGAACTCAATTNTGAAAANGGTTCCTCATTAATATCAATTACAACA
CTAACAACAAGTTGTAAATCAATAAATCTTGAATTCGAAACTCAAGAAAA
ACTTTTAAAATTTATAGAATCAGATATTCAAAATATTACTCATTTCAAAG
AACCCAATTTTCCCATTTACGAAATATCAAAAGATTTTAAAGTTGATTTT
AAGGAGAATTTAATCAAAGATTTAACCATAAATAGCATCACTAAAGAATT
TGGGATAGAGAAATATCAACATTTAATAGATATAAGGTCTCAAAAATTAT
TTTTATACAAATCTTCAGCAGAGATTTTATTTTCAAAATTAAAGCAGCAA
CAAAAACAACAAAAACAACAAGAACAACAACAAGAACAAGAACAAGAACA
AGAACAAGAACAACATCAGCAACAATATGATGATATAGTAGACAATAATA
AATTTAAAAAAGAGATTGAAATTGGTGATTTATTTATACTTTTACCTTTA
GATTCAAATCAGAAAATTAAAATAGTTTTCAATGGTTTAAATAATGATAA
TTGTAAAATAAAAGAAGAAAAAGAAGAAAAAGAAGAGGAGAAAGAACAAG
TTGAAGAAAAGATGAAAATGGAGAATGAAGTTATAGTTATTGACGATTAT
CAAGAAAATAATGATAATGAATATGGAGTTTTATTATTTTTTAAAGTTTT
TAAAGAAAATGAAAATATATTTGAAATTAAAAAAGAATTAAATAATTTAT
TATCAAATCAACAA
Gap no gap
Contig length 1064
Chromosome number (1..6, M) 4
Chromosome length 5430582
Start point 4293710
End point 4292646
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14276
List of clone(s) 

est1=CHD826E,1,1065
Translated Amino Acid sequence 
sntlpttnfklkkkvdmili*irhiyihi*hi*hi*f*ilysneknkkkqnkkk*KINXN
XXVDSKXGEXKEITKLLQFSNFKEIDEDFQKFINKNHXFXXELNXEXGSSLISITTLTTS
CKSINLEFETQEKLLKFIESDIQNITHFKEPNFPIYEISKDFKVDFKENLIKDLTINSIT
KEFGIEKYQHLIDIRSQKLFLYKSSAEILFSKLKQQQKQQKQQEQQQEQEQEQEQEQHQQ
QYDDIVDNNKFKKEIEIGDLFILLPLDSNQKIKIVFNGLNNDNCKIKEEKEEKEEEKEQV
EEKMKMENEVIVIDDYQENNDNEYGVLLFFKVFKENENIFEIKKELNNLLSNQQ
Translated Amino Acid sequence (All Frames) 
Frame A:
iptpyqlltlnlkkkli*f*fkldiyiyiyntyntfnfkffiptkkikknkikknkk*xq
xqxltqkxgnxkrlqnxynfqiskklmkifksl*iktthsqxnsixkxvph*yqlqh*qq
vvnq*ilnsklkknf*nl*nqifkillisknpifpftkyqkilklilrri*ski*p*ias
lknlg*rnini**i*glknyfytnlqqrfyfqn*ssnknnknnknnnknknknknknnis
nnmmi**tiinlkkrlklviylyfyl*iqirklk*fsmv*imiivk*kkkkkkkkrrknk
lkkr*kwrmkl*lltiikkimimnmefyyflkflkkmkiylklkkn*iiyyqin


Frame B:
fqhltny*l*t*kks*ydfnln*tyiytyithithlilnslfqrkk*kktk*kkiknkxk
xxg*lkrxgx*rdyktxtifkfqrn**rfskvyk*kpxixkxtqx*kxflininyntnnk
l*inks*irnsrktfkiyriryskyysfqrtqfshlrnikrf*s*f*gefnqrfnhk*hh
*riwdreistfnrykvskiifiqifsrdfifkikaatkttkttrtttrtrtrtrtrttsa
ti**ysrq**i*krd*nw*fiytftfrfksen*nsfqwfk***l*nkrrkrrkrrgerts
*rkdenge*sysy*rlsrk****iwsfiif*sf*rk*kyi*n*krik*fiikst


Frame C:
sntlpttnfklkkkvdmili*irhiyihi*hi*hi*f*ilysneknkkkqnkkk*KINXN
XXVDSKXGEXKEITKLLQFSNFKEIDEDFQKFINKNHXFXXELNXEXGSSLISITTLTTS
CKSINLEFETQEKLLKFIESDIQNITHFKEPNFPIYEISKDFKVDFKENLIKDLTINSIT
KEFGIEKYQHLIDIRSQKLFLYKSSAEILFSKLKQQQKQQKQQEQQQEQEQEQEQEQHQQ
QYDDIVDNNKFKKEIEIGDLFILLPLDSNQKIKIVFNGLNNDNCKIKEEKEEKEEEKEQV
EEKMKMENEVIVIDDYQENNDNEYGVLLFFKVFKENENIFEIKKELNNLLSNQQ
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14276-1 (Contig-U14276-1Q)
/CSM_Contig/Contig-U14276-1Q.Seq.d
         (1064 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Conti...   876  0.0
Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U05240-1 (Contig-U05240-1Q) /CSM_Contig/Conti...    40  0.005
Contig-U14663-1 (Contig-U14663-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U08967-1 (Contig-U08967-1Q) /CSM_Contig/Conti...    38  0.019
Contig-U14861-1 (Contig-U14861-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U13906-1 (Contig-U13906-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U13237-1 (Contig-U13237-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U12255-1 (Contig-U12255-1Q) /CSM_Contig/Conti...    36  0.075
Contig-U11408-1 (Contig-U11408-1Q) /CSM_Contig/Conti...    36  0.075

>Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Contig-U14276-1Q.Seq.d
          Length = 1064

 Score =  876 bits (442), Expect = 0.0
 Identities = 475/475 (100%)
 Strand = Plus / Plus

                                                                       
Query: 172 taaatncaaatncaanggttgactcaaaaganggggaatntaaagagattacaaaactnt 231
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 172 taaatncaaatncaanggttgactcaaaaganggggaatntaaagagattacaaaactnt 231

                                                                       
Query: 232 tacaattttcaaatttcaaagaaattgatgaagattttcaaaagtttataaataaaaacc 291
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 232 tacaattttcaaatttcaaagaaattgatgaagattttcaaaagtttataaataaaaacc 291

                                                                       
Query: 292 acncattcncaagngaactcaattntgaaaanggttcctcattaatatcaattacaacac 351
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 acncattcncaagngaactcaattntgaaaanggttcctcattaatatcaattacaacac 351

                                                                       
Query: 352 taacaacaagttgtaaatcaataaatcttgaattcgaaactcaagaaaaacttttaaaat 411
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 taacaacaagttgtaaatcaataaatcttgaattcgaaactcaagaaaaacttttaaaat 411

                                                                       
Query: 412 ttatagaatcagatattcaaaatattactcatttcaaagaacccaattttcccatttacg 471
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 ttatagaatcagatattcaaaatattactcatttcaaagaacccaattttcccatttacg 471

                                                                       
Query: 472 aaatatcaaaagattttaaagttgattttaaggagaatttaatcaaagatttaaccataa 531
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 472 aaatatcaaaagattttaaagttgattttaaggagaatttaatcaaagatttaaccataa 531

                                                                       
Query: 532 atagcatcactaaagaatttgggatagagaaatatcaacatttaatagatataaggtctc 591
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 atagcatcactaaagaatttgggatagagaaatatcaacatttaatagatataaggtctc 591

                                                                  
Query: 592 aaaaattatttttatacaaatcttcagcagagattttattttcaaaattaaagca 646
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 592 aaaaattatttttatacaaatcttcagcagagattttattttcaaaattaaagca 646


 Score =  276 bits (139), Expect = 5e-74
 Identities = 139/139 (100%)
 Strand = Plus / Plus

                                                                       
Query: 716 tcagcaacaatatgatgatatagtagacaataataaatttaaaaaagagattgaaattgg 775
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tcagcaacaatatgatgatatagtagacaataataaatttaaaaaagagattgaaattgg 775

                                                                       
Query: 776 tgatttatttatacttttacctttagattcaaatcagaaaattaaaatagttttcaatgg 835
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 tgatttatttatacttttacctttagattcaaatcagaaaattaaaatagttttcaatgg 835

                              
Query: 836 tttaaataatgataattgt 854
           |||||||||||||||||||
Sbjct: 836 tttaaataatgataattgt 854


 Score = 93.7 bits (47), Expect = 4e-19
 Identities = 47/47 (100%)
 Strand = Plus / Plus

                                                          
Query: 931 ttatagttattgacgattatcaagaaaataatgataatgaatatgga 977
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 931 ttatagttattgacgattatcaagaaaataatgataatgaatatgga 977


 Score = 89.7 bits (45), Expect = 6e-18
 Identities = 63/72 (87%)
 Strand = Plus / Plus

                                                                      
Query: 1  attccaacaccttaccaactactaactttaaacttnnnnnnnnngttgatatgattttaa 60
          |||||||||||||||||||||||||||||||||||         ||||||||||||||||
Sbjct: 1  attccaacaccttaccaactactaactttaaacttaaaaaaaaagttgatatgattttaa 60

                      
Query: 61 tttaaattagac 72
          ||||||||||||
Sbjct: 61 tttaaattagac 72


 Score = 63.9 bits (32), Expect = 3e-10
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                           
Query: 101 acacatttaattttaaattctttattccaacg 132
           ||||||||||||||||||||||||||||||||
Sbjct: 101 acacatttaattttaaattctttattccaacg 132


>Contig-U06783-1 (Contig-U06783-1Q) /CSM_Contig/Contig-U06783-1Q.Seq.d
          Length = 661

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 744 aataataaatttaaaaaaga 763
           ||||||||||||||||||||
Sbjct: 621 aataataaatttaaaaaaga 640


>Contig-U05240-1 (Contig-U05240-1Q) /CSM_Contig/Contig-U05240-1Q.Seq.d
          Length = 528

 Score = 40.1 bits (20), Expect = 0.005
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 403 ttttaaaatttatagaatca 422
           ||||||||||||||||||||
Sbjct: 379 ttttaaaatttatagaatca 360


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 22,302
Number of Sequences: 6905
Number of extensions: 22302
Number of successful extensions: 2813
Number of sequences better than 10.0: 333
length of query: 1064
length of database: 5,674,871
effective HSP length: 16
effective length of query: 1048
effective length of database: 5,564,391
effective search space: 5831481768
effective search space used: 5831481768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)
dna update 2008.12.20
Homology vs DNA 
Query= Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Contig-U14276-1Q.Seq.d
         (1064 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ363959) Dictyostelium discoideum cDNA clone:ddc29d08, 5' ...   731   0.0    4
(BJ376618) Dictyostelium discoideum cDNA clone:ddc29d08, 3' ...   626   0.0    3
(AL844509) Plasmodium falciparum chromosome 13.                    34   0.014  19
(AV348959) Mus musculus 10 days neonate cerebellum cDNA, RIK...    32   0.015  4
(AY691418) Paracoccus nothofagicola cytochrome b (cytb) gene...    32   0.032  5
(AC116984) Dictyostelium discoideum chromosome 2 map 2567470...    34   0.036  15
(AC005308) Plasmodium falciparum chromosome 12 clone 3D7, **...    48   0.043  8
(CP000361) Arcobacter butzleri RM4018, complete genome.            36   0.059  16
(CP000395) Borrelia afzelii PKo, complete genome.                  34   0.070  17
(CU469464) Candidatus Phytoplasma mali strain AT complete ch...    36   0.10   15
(ER626358) 1093018204776 Global-Ocean-Sampling_GS-36-01-01-2...    34   0.11   3
(CP000123) Mycoplasma capricolum subsp. capricolum ATCC 2734...    32   0.11   18
(EI927825) VUH2-68F2TR VUUBBa (VUH2) Vigna unguiculata genom...    40   0.11   3
(AL929359) Plasmodium falciparum strain 3D7, chromosome 9; s...    34   0.13   10
(EJ635576) 1092986901173 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.13   2
(EJ783054) 1093017293107 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.13   2
(EJ635492) 1092986900978 Global-Ocean-Sampling_GS-29-01-01-1...    38   0.13   2
(EJ882687) 1093018403911 Global-Ocean-Sampling_GS-30-02-01-1...    38   0.13   2
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.13   12
(AC214615) Heliconius erato clone BBAM-36L22, WORKING DRAFT ...    34   0.14   10
(AE014818) Plasmodium falciparum 3D7 chromosome 14 section 3...    36   0.14   9
(AC116979) Dictyostelium discoideum chromosome 2 map 6445720...    34   0.15   14
(CP000770) Candidatus Sulcia muelleri GWSS, complete genome.       36   0.15   11
(AC189437) Brassica rapa subsp. pekinensis clone KBrB069A23,...    38   0.16   7
(AP001264) Homo sapiens genomic DNA, chromosome 11q, clone:R...    50   0.17   1
(AC032024) Homo sapiens chromosome 11 clone RP11-325I7 map 1...    50   0.17   1
(AP001801) Homo sapiens genomic DNA, chromosome 11q clone:CT...    50   0.17   1
(AP000750) Homo sapiens genomic DNA, chromosome 11q14 clone:...    50   0.17   1
(AC016896) Homo sapiens chromosome 11 clone RP11-48P10, WORK...    50   0.17   1
(ET195240) MUGQ_CH252P392N07Sp6_CP743_020 CHORI-252 Vervet M...    50   0.17   1
(EI519222) MUGQ_CH252P517O24Sp6_GL511_082 CHORI-252 Vervet M...    50   0.17   1
(FI076469) CHO_OF7367xi13f1.ab1 CHO_OF7 Nicotiana tabacum ge...    38   0.18   2
(FH964625) CHO_OF6780xe21f1.ab1 CHO_OF6 Nicotiana tabacum ge...    38   0.18   2
(CZ648559) OM__Ba0196J08.r OM__Ba Oryza minuta genomic clone...    38   0.20   3
(AC116963) Dictyostelium discoideum chromosome 2 map 4657875...    34   0.20   11
(AX323521) Sequence 9 from Patent WO0192565.                       32   0.22   5
(DC211722) Plasmodium berghei strain ANKA cDNA clone:MG01285...    40   0.24   3
(EJ071905) 1095458089680 Global-Ocean-Sampling_GS-26-01-01-1...    38   0.29   3
(AC116957) Dictyostelium discoideum chromosome 2 map 1685067...    32   0.34   14
(CP000742) Methanococcus vannielii SB, complete genome.            34   0.38   15
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    34   0.38   16
(AE017332) Mycoplasma hyopneumoniae 232, complete genome.          34   0.40   17
(BX293980) Mycoplasma mycoides subsp. mycoides SC str. PG1, ...    38   0.40   16
(AV377366) Mus musculus adult male cecum cDNA, RIKEN full-le...    32   0.41   3
(AC115599) Dictyostelium discoideum chromosome 2 map 4229098...    36   0.45   9
(AM444427) Vitis vinifera contig VV78X065537.4, whole genome...    34   0.45   2
(AM285307) Spiroplasma citri GII3-3X chromosome, contig Cont...    32   0.46   9
(BA000021) Wigglesworthia glossinidia endosymbiont of Glossi...    40   0.47   16
(AC114930) Homo sapiens chromosome 5 clone CTD-2017A19, comp...    40   0.51   7
(AE014822) Plasmodium falciparum 3D7 chromosome 14 section 7...    34   0.51   10
(AM458382) Vitis vinifera contig VV78X165913.6, whole genome...    36   0.53   4
(DC232691) Plasmodium berghei strain ANKA cDNA clone:SG02549...    32   0.57   3
(EJ338695) 1092963499009 Global-Ocean-Sampling_GS-28-01-01-1...    40   0.59   2
(ED524389) KBrB113A16F KBrB, Brassica rapa BamHI BAC library...    34   0.63   3
(EJ422392) 1093012240468 Global-Ocean-Sampling_GS-28-01-01-1...    44   0.66   2
(CU633478) Zebrafish DNA sequence from clone DKEY-153P21 in ...    48   0.69   1
(AE014845) Plasmodium falciparum 3D7 chromosome 12, section ...    48   0.69   1
(AL359999) Human DNA sequence from clone RP4-743O11 on chrom...    48   0.69   1
(AC087783) Homo sapiens chromosome 11, clone RP11-350D17, co...    48   0.69   1
(AC130866) Rattus norvegicus clone CH230-48E1, WORKING DRAFT...    48   0.69   1
(AC117925) Rattus norvegicus clone CH230-212D2, WORKING DRAF...    48   0.69   1
(AC019083) Homo sapiens chromosome 11 clone RP11-350D17, WOR...    48   0.69   1
(EK388917) 1095469493428 Global-Ocean-Sampling_GS-31-01-01-1...    48   0.69   1
(DU831728) KBrS008O14F KBrS, Brassica rapa Sau3AI BAC librar...    48   0.69   1
(DN909370) Cuc1_3_C09 Cucumber fruit development cDNA librar...    48   0.69   1
(AC195525) Pan troglodytes BAC clone CH251-370D5 from chromo...    44   0.71   3
(CZ928983) 246301 Tomato EcoRI BAC Library Solanum lycopersi...    42   0.73   2
(EJ650749) 1092954000293 Global-Ocean-Sampling_GS-30-02-01-1...    40   0.75   2
(AM441847) Vitis vinifera contig VV78X143021.6, whole genome...    36   0.78   6
(AC006975) Homo sapiens PAC clone RP5-1026B21 from X, comple...    44   0.87   5
(AC021559) Homo sapiens chromosome 4 clone RP11-753L19 map 4...    34   0.92   9
(AL355609) Human DNA sequence from clone RP11-282D7 on chrom...    42   0.94   3
(ET101226) QM0AAB18CH01FM1 CCER1 Citrus clementina genomic c...    32   1.0    4
(CP000538) Campylobacter jejuni subsp. jejuni 81-176, comple...    34   1.1    16
(AE014823) Plasmodium falciparum 3D7 chromosome 14 section 8...    34   1.1    9
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    34   1.1    14
(AC024817) Caenorhabditis elegans cosmid Y54G2A, complete se...    38   1.1    10
(AM441432) Vitis vinifera contig VV78X270836.5, whole genome...    40   1.2    3
(AE014842) Plasmodium falciparum 3D7 chromosome 11 section 7...    34   1.2    9
(AE015927) Clostridium tetani E88, complete genome.                36   1.2    13
(EB824776) 1078066 KZ01 Plodia interpunctella cDNA clone 553...    30   1.2    4
(AM429736) Vitis vinifera contig VV78X015252.8, whole genome...    40   1.3    2
(BX571856) Staphylococcus aureus subsp. aureus strain MRSA25...    38   1.3    17
(AC145868) Pan troglodytes BAC clone RP43-39F11 from chromos...    36   1.4    2
(AC208279) Nomascus leucogenys leucogenys clone CH271-365H9,...    36   1.4    2
(AC223319) Bos taurus clone CH240-422G10, WORKING DRAFT SEQU...    34   1.4    2
(AC149458) Papio anubis clone RP41-397H7, WORKING DRAFT SEQU...    36   1.4    2
(AC155787) Papio anubis clone RP41-255F16, WORKING DRAFT SEQ...    36   1.4    2
(AC073126) Homo sapiens chromosome 7 clone RP11-636N5, WORKI...    36   1.4    2
(AC018625) Homo sapiens chromosome 8 clone RP11-642O14 map 8...    36   1.4    2
(ER429047) 1092963768451 Global-Ocean-Sampling_GS-35-01-01-1...    32   1.4    3
(AC187379) Pan troglodytes BAC clone CH251-371A19 from chrom...    36   1.4    2
(AC074000) Homo sapiens BAC clone CTD-2023N18 from 7, comple...    36   1.4    2
(AC114980) Homo sapiens chromosome 5 clone RP11-549J18, comp...    42   1.4    4
(AC146141) Pan troglodytes BAC clone RP43-3A23 from chromoso...    38   1.4    6
(AC018627) Homo sapiens chromosome 4 clone RP11-757J18 map 4...    36   1.5    2
(EB826802) 1088299 KZ01 Plodia interpunctella cDNA clone 556...    30   1.5    4
(AM860004) Crassostrea gigas EST, 5' end sequence, clone cdn...    38   1.6    2
(AC116956) Dictyostelium discoideum chromosome 2 map 1418423...    34   1.8    12
(EK347995) 1095467584595 Global-Ocean-Sampling_GS-31-01-01-1...    36   1.8    2

>(BJ363959) Dictyostelium discoideum cDNA clone:ddc29d08, 5' end,
           single read.
          Length = 582

 Score =  731 bits (369), Expect(4) = 0.0
 Identities = 403/405 (99%)
 Strand = Plus / Plus


Query: 178 caaatncaanggttgactcaaaaganggggaatntaaagagattacaaaactnttacaat 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 178 caaatncaanggttgactcaaaaganggggaatntaaagagattacaaaactnttacaat 237


Query: 238 tttcaaatttcaaagaaattgatgaagattttcaaaagtttataaataaaaaccacncat 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tttcaaatttcaaagaaattgatgaagattttcaaaagtttataaataaaaaccacncat 297


Query: 298 tcncaagngaactcaattntgaaaanggttcctcattaatatcaattacaacactaacaa 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 tcncaagngaactcaattntgaaaanggttcctcattaatatcaattacaacactaacaa 357


Query: 358 caagttgtaaatcaataaatcttgaattcgaaactcaagaaaaacttttaaaatttatag 417
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 caagttgtaaatcaataaatnttgaattcgaaactcaagaaaaacttttaaaatttatag 417


Query: 418 aatcagatattcaaaatattactcatttcaaagaacccaattttcccatttacgaaatat 477
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 aatcagatnttcaaaatattactcatttcaaagaacccaattttcccatttacgaaatat 477


Query: 478 caaaagattttaaagttgattttaaggagaatttaatcaaagatttaaccataaatagca 537
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 caaaagattttaaagttgattttaaggagaatttaatcaaagatttaaccataaatagca 537


Query: 538 tcactaaagaatttgggatagagaaatatcaacatttaatagata 582
           |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 538 tcactaaagaatttgggatagagaaatatcaacatttaatagata 582

 Score = 69.9 bits (35), Expect(4) = 0.0
 Identities = 35/35 (100%)
 Strand = Plus / Plus


Query: 1  attccaacaccttaccaactactaactttaaactt 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 1  attccaacaccttaccaactactaactttaaactt 35

 Score = 63.9 bits (32), Expect(4) = 0.0
 Identities = 32/32 (100%)
 Strand = Plus / Plus


Query: 101 acacatttaattttaaattctttattccaacg 132
           ||||||||||||||||||||||||||||||||
Sbjct: 101 acacatttaattttaaattctttattccaacg 132

 Score = 56.0 bits (28), Expect(4) = 0.0
 Identities = 28/28 (100%)
 Strand = Plus / Plus


Query: 45 gttgatatgattttaatttaaattagac 72
          ||||||||||||||||||||||||||||
Sbjct: 45 gttgatatgattttaatttaaattagac 72

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 1,041,968,673
Number of extensions: 74171926
Number of successful extensions: 7309628
Number of sequences better than 10.0: 276
Length of query: 1064
Length of database: 95,242,211,685
Length adjustment: 24
Effective length of query: 1040
Effective length of database: 97,308,875,965
Effective search space: 101201231003600
Effective search space used: 101201231003600
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14276-1 (Contig-U14276-1Q) /CSM_Contig/Contig-U14276-1Q.Seq.d
         (1064 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE017226_1333(AE017226|pid:none) Treponema denticola ATCC 35405,...    39   0.41
AE017226_7(AE017226|pid:none) Treponema denticola ATCC 35405, co...    37   0.90
CP000682_24(CP000682|pid:none) Metallosphaera sedula DSM 5348, c...    37   0.90
AE017226_855(AE017226|pid:none) Treponema denticola ATCC 35405, ...    35   4.5
AE017226_2688(AE017226|pid:none) Treponema denticola ATCC 35405,...    35   5.9
(Q8EWY8) RecName: Full=ATP synthase subunit beta;          EC=3....    34   7.7

>AE017226_1333(AE017226|pid:none) Treponema denticola ATCC 35405,
           complete genome.
          Length = 292

 Score = 38.5 bits (88), Expect = 0.41
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
 Frame = +3

Query: 411 FIESDIQNITHFKEPNFPIYEISKDFKVDFKE-----NLIKDLTINSITKEFGIEKYQHL 575
           F++ +IQN  HF  P   +Y  SK +  + K+      L K +TIN I K+F   K  H
Sbjct: 76  FVDIEIQNSWHFDFPERTLYYWSKMYNENIKQGQDYTKLPKCITINLIGKDFDKNKRLH- 134

Query: 576 IDIRSQKLFLYKSSAEILFSKL 641
               ++ L L K + E L SKL
Sbjct: 135 ----NKYLVLEKDTKEPLVSKL 152

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 852,676,501
Number of extensions: 10841264
Number of successful extensions: 39395
Number of sequences better than 10.0: 6
Number of HSP's gapped: 39389
Number of HSP's successfully gapped: 6
Length of query: 354
Length of database: 1,051,180,864
Length adjustment: 129
Effective length of query: 225
Effective length of database: 633,664,753
Effective search space: 142574569425
Effective search space used: 142574569425
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 32 (16.9 bits)
PSORT 

 psg: 0.55  gvh: 0.30  alm: 0.44  top: 0.53  tms: 0.00  mit: 0.17  mip: 0.00
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 48.0 %: nuclear
	 28.0 %: cytoplasmic
	  8.0 %: cytoskeletal
	  8.0 %: mitochondrial
	  4.0 %: vacuolar
	  4.0 %: vesicles of secretory system

>> prediction for Contig-U14276-1 is nuc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0