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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14270-1
Contig ID Contig-U14270-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14270-1 (Contig-U14270-1Q) /CSM_Contig/Contig-U14270-1Q.Seq.d
NNNNNNNNNNAACAGCANGGTAAACCNGCGGGNNCNNGGGGNGGCCGAAC
CAGTTCANCNCAAGGGNGCGCAGCNACNGGGTGAGCCAGCTGCCCANGGC
GCCAANCCAGCTGTTAATGCTGCCAGGNCAGTTCAACGNGGGGCTGCGNN
ACAACATGCTAAACCNGCTGCTCNGGGGGCTGCCAANCCAGTTCAACACA
ATGCNGNTCNGCAACATGCTGANCCAGNTGCCAAGCCAGCCGAATTAACC
NATGCCCNAGAATTNCAACAAGAACACCNAAGNCAAGNAGCTCTCGCAAA
ACNNCNNGCTCGTATTAGNCAACAAAATCNTGTCAAACAAGCNGCCCNAN
AGAAACGAACCTCGCNACGTGCCGCCTCTAAA
Gap no gap
Contig length 382
Chromosome number (1..6, M) -
Chromosome length -
Start point -
End point -
Strand (PLUS/MINUS) -
Number of clones 1
Number of EST 1
Link to clone list U14270
List of clone(s) 

est1=CHD674Z,1,373
Translated Amino Acid sequence 
XXXNSXVNXRXXGXAEPVXXKGAQXXGEPAAXGAXPAVNAARXVQRGAAXQHAKPAAXGA
AXPVQHNAXXQHAXPXAKPAELTXAXEXQQEHXXQXALAKXXARIXQQNXVKQAAXXKRT
SXRAASK
Translated Amino Acid sequence (All Frames) 
Frame A:
xxxxqxgkpagxxggrtssxqgxaatg*ascpxrqxsc*ccqxsstxgcxttc*txcsgg
cqxsstqcxsatc*xxcqasrinxcprixtrtpkxxssrktxxsy*xtkscqtsxpxetn
latcrl*


Frame B:
XXXNSXVNXRXXGXAEPVXXKGAQXXGEPAAXGAXPAVNAARXVQRGAAXQHAKPAAXGA
AXPVQHNAXXQHAXPXAKPAELTXAXEXQQEHXXQXALAKXXARIXQQNXVKQAAXXKRT
SXRAASK


Frame C:
xxxtax*txgxxgxpnqfxxrxrsxxvsqlpxapxqllmlpgqfnxglrxnmlnxllxgl
pxqfntmxxxnmlxqxpsqpn*pmpxnxnkntxxkxlsqnxxlvlxnkixsnkxpxrnep
rxvppl
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14270-1 (Contig-U14270-1Q)
/CSM_Contig/Contig-U14270-1Q.Seq.d
         (382 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14270-1 (Contig-U14270-1Q) /CSM_Contig/Conti...   488  e-138
Contig-U05360-1 (Contig-U05360-1Q) /CSM_Contig/Conti...    28  6.4

>Contig-U14270-1 (Contig-U14270-1Q) /CSM_Contig/Contig-U14270-1Q.Seq.d
          Length = 382

 Score =  488 bits (246), Expect = e-138
 Identities = 372/372 (100%)
 Strand = Plus / Plus

                                                                       
Query: 11  aacagcanggtaaaccngcgggnncnnggggnggccgaaccagttcancncaagggngcg 70
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11  aacagcanggtaaaccngcgggnncnnggggnggccgaaccagttcancncaagggngcg 70

                                                                       
Query: 71  cagcnacngggtgagccagctgcccanggcgccaanccagctgttaatgctgccaggnca 130
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  cagcnacngggtgagccagctgcccanggcgccaanccagctgttaatgctgccaggnca 130

                                                                       
Query: 131 gttcaacgnggggctgcgnnacaacatgctaaaccngctgctcngggggctgccaancca 190
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 gttcaacgnggggctgcgnnacaacatgctaaaccngctgctcngggggctgccaancca 190

                                                                       
Query: 191 gttcaacacaatgcngntcngcaacatgctganccagntgccaagccagccgaattaacc 250
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 gttcaacacaatgcngntcngcaacatgctganccagntgccaagccagccgaattaacc 250

                                                                       
Query: 251 natgcccnagaattncaacaagaacaccnaagncaagnagctctcgcaaaacnncnngct 310
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 natgcccnagaattncaacaagaacaccnaagncaagnagctctcgcaaaacnncnngct 310

                                                                       
Query: 311 cgtattagncaacaaaatcntgtcaaacaagcngcccnanagaaacgaacctcgcnacgt 370
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 cgtattagncaacaaaatcntgtcaaacaagcngcccnanagaaacgaacctcgcnacgt 370

                       
Query: 371 gccgcctctaaa 382
           ||||||||||||
Sbjct: 371 gccgcctctaaa 382


>Contig-U05360-1 (Contig-U05360-1Q) /CSM_Contig/Contig-U05360-1Q.Seq.d
          Length = 834

 Score = 28.2 bits (14), Expect = 6.4
 Identities = 14/14 (100%)
 Strand = Plus / Minus

                         
Query: 152 caacatgctaaacc 165
           ||||||||||||||
Sbjct: 174 caacatgctaaacc 161


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 254
Number of Sequences: 6905
Number of extensions: 254
Number of successful extensions: 8
Number of sequences better than 10.0: 2
length of query: 382
length of database: 5,674,871
effective HSP length: 16
effective length of query: 366
effective length of database: 5,564,391
effective search space: 2036567106
effective search space used: 2036567106
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.20
Homology vs DNA 
Query= Contig-U14270-1 (Contig-U14270-1Q) /CSM_Contig/Contig-U14270-1Q.Seq.d
         (382 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ376746) Dictyostelium discoideum cDNA clone:ddc29c20, 3' ...   462   e-126  1
(AC117075) Dictyostelium discoideum chromosome 2 map 5201047...   210   8e-74  3
(BJ400916) Dictyostelium discoideum cDNA clone:dds15k12, 3' ...   210   8e-74  3
(BJ371784) Dictyostelium discoideum cDNA clone:ddc1p12, 3' e...   210   8e-74  3
(BJ375936) Dictyostelium discoideum cDNA clone:ddc20g18, 3' ...   210   8e-74  3
(BJ371673) Dictyostelium discoideum cDNA clone:ddc1d02, 3' e...   210   8e-74  3
(BJ375980) Dictyostelium discoideum cDNA clone:ddc20p17, 3' ...   210   8e-74  3
(BJ351358) Dictyostelium discoideum cDNA clone:dda42m19, 3' ...   210   8e-74  3
(BJ375363) Dictyostelium discoideum cDNA clone:ddc18n10, 3' ...   210   8e-74  3
(BJ400299) Dictyostelium discoideum cDNA clone:dds9l14, 3' e...   210   8e-74  3
(BJ346446) Dictyostelium discoideum cDNA clone:dda30n24, 3' ...   210   8e-74  3
(BJ402159) Dictyostelium discoideum cDNA clone:dds20m17, 3' ...   210   8e-74  3
(BJ401543) Dictyostelium discoideum cDNA clone:dds23j18, 3' ...   210   8e-74  3
(BJ399198) Dictyostelium discoideum cDNA clone:dds4p17, 3' e...   210   8e-74  3
(BJ377465) Dictyostelium discoideum cDNA clone:ddc24m17, 3' ...   210   8e-74  3
(BJ402214) Dictyostelium discoideum cDNA clone:dds20i21, 3' ...   210   8e-74  3
(BJ374731) Dictyostelium discoideum cDNA clone:ddc16f02, 3' ...   210   8e-74  3
(BJ353432) Dictyostelium discoideum cDNA clone:dda50l05, 3' ...   210   8e-74  3
(BJ377064) Dictyostelium discoideum cDNA clone:ddc22p09, 3' ...   210   8e-74  3
(BJ378546) Dictyostelium discoideum cDNA clone:ddc32g05, 3' ...   210   8e-74  3
(AU034086) Dictyostelium discoideum slug cDNA, clone SLB726.      210   8e-74  3
(AU060810) Dictyostelium discoideum slug cDNA, clone SLB567.      210   8e-74  3
(BJ375385) Dictyostelium discoideum cDNA clone:ddc18d14, 3' ...   210   8e-74  3
(BJ396488) Dictyostelium discoideum cDNA clone:dds42i03, 5' ...   210   8e-74  3
(BJ374808) Dictyostelium discoideum cDNA clone:ddc16j10, 3' ...   210   8e-74  3
(BJ376238) Dictyostelium discoideum cDNA clone:ddc21p15, 3' ...   210   8e-74  3
(BJ380388) Dictyostelium discoideum cDNA clone:ddc38c02, 3' ...   210   8e-74  3
(AU033587) Dictyostelium discoideum slug cDNA, clone SLB202.      210   8e-74  3
(BJ380889) Dictyostelium discoideum cDNA clone:ddc39l16, 3' ...   210   8e-74  3
(BJ399869) Dictyostelium discoideum cDNA clone:dds7g21, 3' e...   210   8e-74  3
(BJ384488) Dictyostelium discoideum cDNA clone:ddc49l13, 3' ...   210   8e-74  3
(BJ372112) Dictyostelium discoideum cDNA clone:ddc11f10, 3' ...   210   8e-74  3
(BJ376656) Dictyostelium discoideum cDNA clone:ddc29l09, 3' ...   210   8e-74  3
(BJ372091) Dictyostelium discoideum cDNA clone:ddc11a11, 3' ...   210   8e-74  3
(BJ344178) Dictyostelium discoideum cDNA clone:dda18m16, 3' ...   210   8e-74  3
(AU033484) Dictyostelium discoideum slug cDNA, clone SLA881.      210   8e-74  3
(BJ378955) Dictyostelium discoideum cDNA clone:ddc33h12, 3' ...   210   8e-74  3
(BJ373978) Dictyostelium discoideum cDNA clone:ddc5n16, 3' e...   210   8e-74  3
(BJ400619) Dictyostelium discoideum cDNA clone:dds14e04, 3' ...   210   8e-74  3
(BJ375706) Dictyostelium discoideum cDNA clone:ddc19m18, 3' ...   210   8e-74  3
(BJ378438) Dictyostelium discoideum cDNA clone:ddc31o21, 3' ...   210   8e-74  3
(BJ373620) Dictyostelium discoideum cDNA clone:ddc3m22, 3' e...   210   8e-74  3
(BJ341444) Dictyostelium discoideum cDNA clone:dda6n14, 3' e...   210   8e-74  3
(BJ375515) Dictyostelium discoideum cDNA clone:ddc19c01, 3' ...   210   8e-74  3
(AU052146) Dictyostelium discoideum slug cDNA, clone SLA116.      210   8e-74  3
(BJ372020) Dictyostelium discoideum cDNA clone:ddc10o20, 3' ...   210   8e-74  3
(BJ377561) Dictyostelium discoideum cDNA clone:ddc24e05, 3' ...   210   8e-74  3
(BJ341525) Dictyostelium discoideum cDNA clone:dda7d02, 3' e...   210   8e-74  3
(BJ343852) Dictyostelium discoideum cDNA clone:dda17l09, 3' ...   210   8e-74  3
(BJ399483) Dictyostelium discoideum cDNA clone:dds6n04, 3' e...   210   8e-74  3
(BJ373101) Dictyostelium discoideum cDNA clone:ddc15a23, 3' ...   210   8e-74  3
(BJ384725) Dictyostelium discoideum cDNA clone:ddc50b16, 3' ...   210   8e-74  3
(BJ345639) Dictyostelium discoideum cDNA clone:dda28g08, 3' ...   210   8e-74  3
(AU033364) Dictyostelium discoideum slug cDNA, clone SLA669.      210   8e-74  3
(AU033783) Dictyostelium discoideum slug cDNA, clone SLB434.      210   8e-74  3
(BJ386190) Dictyostelium discoideum cDNA clone:ddc57m12, 3' ...   210   8e-74  3
(BJ375966) Dictyostelium discoideum cDNA clone:ddc20m18, 3' ...   210   8e-74  3
(BJ340303) Dictyostelium discoideum cDNA clone:dda12d14, 3' ...   210   8e-74  3
(BJ400538) Dictyostelium discoideum cDNA clone:dds13m16, 3' ...   210   8e-74  3
(BJ384548) Dictyostelium discoideum cDNA clone:ddc49i24, 3' ...   210   8e-74  3
(BJ378668) Dictyostelium discoideum cDNA clone:ddc32o12, 3' ...   210   8e-74  3
(BJ373081) Dictyostelium discoideum cDNA clone:ddc15l15, 3' ...   210   8e-74  3
(BJ385003) Dictyostelium discoideum cDNA clone:ddc51a15, 3' ...   210   8e-74  3
(BJ376483) Dictyostelium discoideum cDNA clone:ddc28p16, 3' ...   210   8e-74  3
(BJ375395) Dictyostelium discoideum cDNA clone:ddc18f14, 3' ...   210   8e-74  3
(BJ371716) Dictyostelium discoideum cDNA clone:ddc1n02, 3' e...   210   8e-74  3
(BJ384671) Dictyostelium discoideum cDNA clone:ddc50f09, 3' ...   210   8e-74  3
(BJ372841) Dictyostelium discoideum cDNA clone:ddc14m12, 3' ...   210   8e-74  3
(BJ382680) Dictyostelium discoideum cDNA clone:ddc45e15, 3' ...   210   8e-74  3
(BJ375975) Dictyostelium discoideum cDNA clone:ddc20o17, 3' ...   210   8e-74  3
(BJ379896) Dictyostelium discoideum cDNA clone:ddc36i07, 3' ...   210   8e-74  3
(BJ372822) Dictyostelium discoideum cDNA clone:ddc14f11, 3' ...   210   8e-74  3
(AU052185) Dictyostelium discoideum slug cDNA, clone SLA191.      210   8e-74  3
(BJ344783) Dictyostelium discoideum cDNA clone:dda20a15, 3' ...   210   8e-74  3
(BJ343633) Dictyostelium discoideum cDNA clone:dda16n18, 3' ...   210   8e-74  3
(BJ345990) Dictyostelium discoideum cDNA clone:dda29a22, 3' ...   210   8e-74  3
(BJ377047) Dictyostelium discoideum cDNA clone:ddc22l12, 3' ...   210   8e-74  3
(BJ383605) Dictyostelium discoideum cDNA clone:ddc53i17, 3' ...   210   8e-74  3
(BJ384956) Dictyostelium discoideum cDNA clone:ddc51f11, 3' ...   210   8e-74  3
(BJ373981) Dictyostelium discoideum cDNA clone:ddc5o15, 3' e...   210   8e-74  3
(BJ371712) Dictyostelium discoideum cDNA clone:ddc1m02, 3' e...   210   8e-74  3
(BJ381941) Dictyostelium discoideum cDNA clone:ddc43l12, 3' ...   210   8e-74  3
(BJ381779) Dictyostelium discoideum cDNA clone:ddc42j16, 3' ...   210   8e-74  3
(BJ374726) Dictyostelium discoideum cDNA clone:ddc16e01, 3' ...   210   8e-74  3
(BJ379945) Dictyostelium discoideum cDNA clone:ddc36c15, 3' ...   210   8e-74  3
(BJ377510) Dictyostelium discoideum cDNA clone:ddc24j21, 3' ...   210   8e-74  3
(BJ399528) Dictyostelium discoideum cDNA clone:dds6j10, 3' e...   210   8e-74  3
(BJ386274) Dictyostelium discoideum cDNA clone:ddc57n14, 3' ...   210   8e-74  3
(BJ341755) Dictyostelium discoideum cDNA clone:dda8e04, 3' e...   210   8e-74  3
(BJ372263) Dictyostelium discoideum cDNA clone:ddc11l19, 3' ...   210   8e-74  3
(BJ376229) Dictyostelium discoideum cDNA clone:ddc21n17, 3' ...   204   5e-72  3
(BJ385205) Dictyostelium discoideum cDNA clone:ddc54n03, 3' ...   210   5e-72  3
(BJ376501) Dictyostelium discoideum cDNA clone:ddc28e22, 3' ...   204   5e-72  3
(BJ376053) Dictyostelium discoideum cDNA clone:ddc21d05, 3' ...   204   5e-72  3
(BJ375525) Dictyostelium discoideum cDNA clone:ddc19e03, 3' ...   204   5e-72  3
(BJ379632) Dictyostelium discoideum cDNA clone:ddc35a16, 3' ...   210   5e-72  3
(BJ377237) Dictyostelium discoideum cDNA clone:ddc22j04, 3' ...   210   5e-72  3
(BJ377811) Dictyostelium discoideum cDNA clone:ddc26d04, 3' ...   224   1e-71  2
(BJ376361) Dictyostelium discoideum cDNA clone:ddc28p03, 3' ...   202   2e-71  3
(BJ408338) Dictyostelium discoideum cDNA clone:dds45a17, 3' ...   202   2e-71  3

>(BJ376746) Dictyostelium discoideum cDNA clone:ddc29c20, 3' end,
           single read.
          Length = 373

 Score =  462 bits (233), Expect = e-126
 Identities = 338/338 (100%)
 Strand = Plus / Minus


Query: 45  ccgaaccagttcancncaagggngcgcagcnacngggtgagccagctgcccanggcgcca 104
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 ccgaaccagttcancncaagggngcgcagcnacngggtgagccagctgcccanggcgcca 280


Query: 105 anccagctgttaatgctgccaggncagttcaacgnggggctgcgnnacaacatgctaaac 164
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 anccagctgttaatgctgccaggncagttcaacgnggggctgcgnnacaacatgctaaac 220


Query: 165 cngctgctcngggggctgccaanccagttcaacacaatgcngntcngcaacatgctganc 224
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 219 cngctgctcngggggctgccaanccagttcaacacaatgcngntcngcaacatgctganc 160


Query: 225 cagntgccaagccagccgaattaaccnatgcccnagaattncaacaagaacaccnaagnc 284
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 159 cagntgccaagccagccgaattaaccnatgcccnagaattncaacaagaacaccnaagnc 100


Query: 285 aagnagctctcgcaaaacnncnngctcgtattagncaacaaaatcntgtcaaacaagcng 344
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 99  aagnagctctcgcaaaacnncnngctcgtattagncaacaaaatcntgtcaaacaagcng 40


Query: 345 cccnanagaaacgaacctcgcnacgtgccgcctctaaa 382
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 39  cccnanagaaacgaacctcgcnacgtgccgcctctaaa 2

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 104,313,762
Number of extensions: 4918995
Number of successful extensions: 124168
Number of sequences better than 10.0: 179
Length of query: 382
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 359
Effective length of database: 93,106,754,628
Effective search space: 33425324911452
Effective search space used: 33425324911452
X1: 11 (21.8 bits)
S2: 21 (42.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14270-1 (Contig-U14270-1Q) /CSM_Contig/Contig-U14270-1Q.Seq.d
         (382 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S28358(S28358;S20090) prespore vesicle protein - slime mold (Dic...    85   7e-16
(P08798) RecName: Full=Prespore vesicle protein;          Short=...    85   7e-16

>S28358(S28358;S20090) prespore vesicle protein - slime mold
           (Dictyostelium discoideum)  &X57149_1(X57149|pid:none)
          Length = 513

 Score = 85.1 bits (209), Expect = 7e-16
 Identities = 45/65 (69%), Positives = 48/65 (73%)
 Frame = +2

Query: 188 PVQHNAXXQHAXPXAKPAELTXAXEXQQEHXXQXALAKXXARIXQQNXVKQAAXXKRTSX 367
           PVQHNA  QHA P AKPA+LT A + QQEH  Q ALAK  ARI QQN VKQAA  K+TS
Sbjct: 438 PVQHNAAQQHAKPAAKPAKLTNAQKLQQEHQRQEALAKQQARIRQQNLVKQAAQKKQTSQ 497

Query: 368 RAASK 382
           RAASK
Sbjct: 498 RAASK 502

 Score = 35.0 bits (79), Expect = 0.83
 Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 3/56 (5%)
 Frame = +2

Query: 188 PVQHNAXXQHAXPXAKPAELTXAXEXQQEHXXQXALAK---XXARIXQQNXVKQAA 346
           PVQHNA  QHA P A  A         Q+H    A AK     AR  Q N  +Q A
Sbjct: 373 PVQHNAQQQHAKPAAHTAAKPVQHNAAQQHAKPAAHAKPAVNAARPVQHNAAQQHA 428

 Score = 33.5 bits (75), Expect = 2.4
 Identities = 26/63 (41%), Positives = 29/63 (46%), Gaps = 10/63 (15%)
 Frame = +2

Query: 188 PVQHNAXXQHAXP--------XAKPAELTXAXEXQQEHXXQXA--LAKXXARIXQQNXVK 337
           PVQHNA  QHA P         AKPA+   A + QQ+H    A   AK      QQ   K
Sbjct: 326 PVQHNAQQQHAKPAQHAAQQQHAKPAQ-HVAQQQQQQHAKPAAHTAAKPVQHNAQQQHAK 384

Query: 338 QAA 346
            AA
Sbjct: 385 PAA 387

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 321,447,889
Number of extensions: 3320505
Number of successful extensions: 3676
Number of sequences better than 10.0: 2
Number of HSP's gapped: 3670
Number of HSP's successfully gapped: 6
Length of query: 127
Length of database: 1,051,180,864
Length adjustment: 92
Effective length of query: 35
Effective length of database: 753,417,436
Effective search space: 26369610260
Effective search space used: 26369610260
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 29 (15.8 bits)
PSORT 

 psg: 0.72  gvh: 0.47  alm: 0.58  top: 0.53  tms: 0.00  mit: 0.16  mip: 0.03
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 40.0 %: cytoplasmic
	 28.0 %: nuclear
	 20.0 %: mitochondrial
	  4.0 %: cytoskeletal
	  4.0 %: vacuolar
	  4.0 %: endoplasmic reticulum

>> prediction for Contig-U14270-1 is cyt
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0