>Contig-U02528-1 (Contig-U02528-1Q) /CSM_Contig/Contig-U02528-1Q.Seq.d
AGTACAATAGTNAACCATTTTCATATAATAATTCAACATTTAATTTTTCA
AAGAATAAATATCATGGTAATCATGGTAATCACCATAAGAGAAATGAAAA
ACCAATTCATATTCCATTATGGTTAGAAGGACATTATACCAGTAAGGATT
TATCAAGTTTATCATTTAATAGAGAGATTGAATTGTTTTCACAATGGTTG
GAACCAAGTGAGTTGGAGTCAAGAATACGACAAAAGATAATAAGAGATTT
GGATGCTATAGTTAAATCAAATTGGCCAAAAGCAAATGTAGTGGTATTTG
GTTCCTTTTCTTCAAATCTATTCATTCCTTCCAGTGATATTGATATTCAA
ATCTCTGGCATTAACAATGCTGAAAGTGTAAATAAATACAATCAAAATCC
AATTAGAGACCTCTTTGATATAATAATTAGAAATCATCAAGACTCTTTCA
TAAATGTACGGAATATTTTCGGTGCTAAAGTTCCAATCATTAAAATGACA
AGTTCTCATTCCCACTACAATATTGATATTTGTTTTGATACTCCAAATGG
TATTGAAAATACTGCTGTTGTTAAAGGTTTATTAAAACAATATAAATCAA
TGAGAACATTACTTTTAATAATAAAATTCTTTTTACATCAAAATAATTTA
AATGAAACATATACTGGT

est1=AFD221F,1,669

YNSXPFSYNNSTFNFSKNKYHGNHGNHHKRNEKPIHIPLWLEGHYTSKDLSSLSFNREIE
LFSQWLEPSELESRIRQKIIRDLDAIVKSNWPKANVVVFGSFSSNLFIPSSDIDIQISGI
NNAESVNKYNQNPIRDLFDIIIRNHQDSFINVRNIFGAKVPIIKMTSSHSHYNIDICFDT
PNGIENTAVVKGLLKQYKSMRTLLLIIKFFLHQNNLNETYTG

Frame A:
stivnhfhiiiqhlifqrinimvimvitiremknqfifhyg*kdiipvriyqvyhlierl
ncfhngwnqvswsqeydkr**eiwml*lnqigqkqm*wylvpflqiysflpvilifksla
ltmlkv*intikiqletsli**leiiktls*mygifsvlkfqslk*qvlipttilifvli
lqmvlkillllkvy*nninq*ehyf***nsfyikii*mkhil


Frame B:
vq*xtifi**fni*ffke*isw*sw*sp*ek*ktnsysimvrrtlyq*gfikfii**rd*
ivftmvgtk*vgvknttkdnkrfgcys*iklakskcsgiwflffksihsfq*y*ysnlwh
*qc*kck*iqsksn*rpl*ynn*kssrlfhkcteyfrc*ssnh*ndkfsfplqy*ylf*y
skwy*kyccc*rfikti*inenitfnnkilftsk*fk*niyw


Frame C:
YNSXPFSYNNSTFNFSKNKYHGNHGNHHKRNEKPIHIPLWLEGHYTSKDLSSLSFNREIE
LFSQWLEPSELESRIRQKIIRDLDAIVKSNWPKANVVVFGSFSSNLFIPSSDIDIQISGI
NNAESVNKYNQNPIRDLFDIIIRNHQDSFINVRNIFGAKVPIIKMTSSHSHYNIDICFDT
PNGIENTAVVKGLLKQYKSMRTLLLIIKFFLHQNNLNETYTG

Query= Contig-U02528-1 (Contig-U02528-1Q)
/CSM_Contig/Contig-U02528-1Q.Seq.d
         (668 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U02528-1 (Contig-U02528-1Q) /CSM_Contig/Conti...  1318  0.0
Contig-U06665-1 (Contig-U06665-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U03165-1 (Contig-U03165-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U00648-1 (Contig-U00648-1Q) /CSM_Contig/Conti...    40  0.003
Contig-U11530-1 (Contig-U11530-1Q) /CSM_Contig/Conti...    38  0.012
Contig-U12405-1 (Contig-U12405-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U11694-1 (Contig-U11694-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U10026-1 (Contig-U10026-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U03971-1 (Contig-U03971-1Q) /CSM_Contig/Conti...    36  0.047
Contig-U03750-1 (Contig-U03750-1Q) /CSM_Contig/Conti...    36  0.047

>Contig-U02528-1 (Contig-U02528-1Q) /CSM_Contig/Contig-U02528-1Q.Seq.d
          Length = 668

 Score = 1318 bits (665), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtacaatagtnaaccattttcatataataattcaacatttaatttttcaaagaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtacaatagtnaaccattttcatataataattcaacatttaatttttcaaagaataaat 60

                                                                       
Query: 61  atcatggtaatcatggtaatcaccataagagaaatgaaaaaccaattcatattccattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcatggtaatcatggtaatcaccataagagaaatgaaaaaccaattcatattccattat 120

                                                                       
Query: 121 ggttagaaggacattataccagtaaggatttatcaagtttatcatttaatagagagattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttagaaggacattataccagtaaggatttatcaagtttatcatttaatagagagattg 180

                                                                       
Query: 181 aattgttttcacaatggttggaaccaagtgagttggagtcaagaatacgacaaaagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgttttcacaatggttggaaccaagtgagttggagtcaagaatacgacaaaagataa 240

                                                                       
Query: 241 taagagatttggatgctatagttaaatcaaattggccaaaagcaaatgtagtggtatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagagatttggatgctatagttaaatcaaattggccaaaagcaaatgtagtggtatttg 300

                                                                       
Query: 301 gttccttttcttcaaatctattcattccttccagtgatattgatattcaaatctctggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttccttttcttcaaatctattcattccttccagtgatattgatattcaaatctctggca 360

                                                                       
Query: 361 ttaacaatgctgaaagtgtaaataaatacaatcaaaatccaattagagacctctttgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaacaatgctgaaagtgtaaataaatacaatcaaaatccaattagagacctctttgata 420

                                                                       
Query: 421 taataattagaaatcatcaagactctttcataaatgtacggaatattttcggtgctaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taataattagaaatcatcaagactctttcataaatgtacggaatattttcggtgctaaag 480

                                                                       
Query: 481 ttccaatcattaaaatgacaagttctcattcccactacaatattgatatttgttttgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttccaatcattaaaatgacaagttctcattcccactacaatattgatatttgttttgata 540

                                                                       
Query: 541 ctccaaatggtattgaaaatactgctgttgttaaaggtttattaaaacaatataaatcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctccaaatggtattgaaaatactgctgttgttaaaggtttattaaaacaatataaatcaa 600

                                                                       
Query: 601 tgagaacattacttttaataataaaattctttttacatcaaaataatttaaatgaaacat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgagaacattacttttaataataaaattctttttacatcaaaataatttaaatgaaacat 660

                   
Query: 661 atactggt 668
           ||||||||
Sbjct: 661 atactggt 668


>Contig-U06665-1 (Contig-U06665-1Q) /CSM_Contig/Contig-U06665-1Q.Seq.d
          Length = 539

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 93  aatgaaaaaccaattcatattcca 116
           ||||||||||||||||| ||||||
Sbjct: 1   aatgaaaaaccaattcaaattcca 24


>Contig-U03165-1 (Contig-U03165-1Q) /CSM_Contig/Contig-U03165-1Q.Seq.d
          Length = 1394

 Score = 40.1 bits (20), Expect = 0.003
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 14  accattttcatataataattcaacattt 41
           ||||||||||| |||||||||| |||||
Sbjct: 199 accattttcatctaataattcaccattt 172


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,379
Number of Sequences: 6905
Number of extensions: 14379
Number of successful extensions: 1564
Number of sequences better than 10.0: 156
length of query: 668
length of database: 5,674,871
effective HSP length: 16
effective length of query: 652
effective length of database: 5,564,391
effective search space: 3627982932
effective search space used: 3627982932
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 15 (30.2 bits)

Query= Contig-U02528-1 (Contig-U02528-1Q) /CSM_Contig/Contig-U02528-1Q.Seq.d
         (668 letters)

Database: ddbj_A
           102,105,510 sequences; 101,790,757,118 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ324604) Dictyostelium discoideum cDNA clone:dda7i06, 5' e...  1318   0.0    1
(AP009180) Candidatus Carsonella ruddii PV DNA, complete gen...    36   0.010  8
(AC097945) Rattus norvegicus clone CH230-178A6, WORKING DRAF...    36   0.023  7
(AC213081) Populus trichocarpa clone POP002-D20, complete se...    52   0.028  1
(AC009811) Homo sapiens chromosome 3, clone RP11-491K7, comp...    42   0.035  6
(CP001184) Ureaplasma urealyticum serovar 10 str. ATCC 33699...    34   0.16   15
(AE014828) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   0.18   8
(AC117176) Dictyostelium discoideum chromosome 2 map 5018074...    36   0.19   7
(CR933104) Medicago truncatula chromosome 5 clone mth2-25b3,...    40   0.23   6
(CP000942) Ureaplasma parvum serovar 3 str. ATCC 27815, comp...    32   0.26   13
(AF222894) Ureaplasma parvum serovar 3 str. ATCC 700970, com...    32   0.26   13
(AC167887) Bos taurus clone CH240-204I2, WORKING DRAFT SEQUE...    40   0.27   6
(AC215840) Populus trichocarpa clone POP043-C12, complete se...    32   0.28   7
(AC116305) Dictyostelium discoideum chromosome 2 map 1005175...    36   0.31   12
(FH462832) CHO_OF4946xb10r1.ab1 CHO_OF4 Nicotiana tabacum ge...    34   0.32   2
(FG543996) NADI-aaa81b11.b2 Rhodnius_prolixus_EST_NADI_5th_i...    36   0.32   2
(EJ157760) 1092344036067 Global-Ocean-Sampling_GS-27-01-01-1...    44   0.32   2
(CU695332) Brassica rapa subsp. pekinensis clone KBrH127P20,...    38   0.34   6
(AL049184) Plasmodium falciparum DNA *** SEQUENCING IN PROGR...    36   0.40   8
(AL772373) Zebrafish DNA sequence from clone CH211-143A22 in...    48   0.43   1
(EI316676) GM_WBc0050D16.f GM_WBc Glycine max genomic clone ...    48   0.43   1
(CR954304) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    40   0.55   5
(AC113390) Homo sapiens chromosome 5 clone RP11-360C3, compl...    34   0.58   6
(CU041266) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    40   0.69   2
(AC111939) Rattus norvegicus clone CH230-203M16, WORKING DRA...    36   0.79   5
(AC027384) Homo sapiens chromosome 1 clone RP11-225O17 map 1...    34   0.92   2
(AC162220) Bos taurus clone CH240-111B22, WORKING DRAFT SEQU...    36   0.92   7
(AC005139) Plasmodium falciparum chromosome 12, *** SEQUENCI...    36   0.93   10
(AL356429) Human DNA sequence *** SEQUENCING CANCELLED *** f...    34   0.94   2
(AC118990) Homo sapiens chromosome 1 clone RP11-243K11, comp...    34   0.98   2
(AC003091) Homo sapiens BAC clone CTA-326G4 from 7, complete...    40   0.98   5
(AC122337) Mus musculus BAC clone RP23-351M10 from chromosom...    40   1.1    4
(AC027127) Homo sapiens chromosome 3 clone RP11-611B18 map 3...    40   1.2    5
(AC191236) Pan troglodytes BAC clone CH251-312N6 from chromo...    40   1.2    6
(AC106268) Rattus norvegicus clone CH230-220K9, *** SEQUENCI...    36   1.3    5
(AC004157) Plasmodium falciparum chromosome 12 clone PFYAC29...    32   1.4    10
(AC093605) Homo sapiens BAC clone RP11-583P24 from 4, comple...    38   1.4    6
(AC145044) Bos taurus clone RP42-23K1, WORKING DRAFT SEQUENC...    36   1.4    7
(AM425786) Vitis vinifera contig VV78X128773.7, whole genome...    38   1.5    2
(AC116330) Dictyostelium discoideum chromosome 2 map 3191214...    34   1.5    9
(BX324220) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    44   1.6    3
(AC165637) Bos taurus clone CH240-164C14, WORKING DRAFT SEQU...    38   1.6    5
(AC012239) Homo sapiens clone RP11-16F6, WORKING DRAFT SEQUE...    38   1.7    4
(BX571757) Zebrafish DNA sequence from clone CH211-273J9 in ...    46   1.7    1
(BX470078) Zebrafish DNA sequence from clone DKEYP-8C4 in li...    46   1.7    1
(BX004988) Zebrafish DNA sequence from clone CH211-79C4 in l...    46   1.7    1
(AL627263) Zebrafish DNA sequence from clone RP71-1L9 in lin...    46   1.7    1
(AC103068) Rattus norvegicus clone CH230-170K13, *** SEQUENC...    46   1.7    1
(AC103062) Rattus norvegicus clone CH230-167A20, WORKING DRA...    46   1.7    1
(CU651574) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.7    1
(CU467735) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(CU329693) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    46   1.7    1
(CR854909) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.7    1
(CR854902) Zebrafish DNA sequence *** SEQUENCING CANCELLED *...    46   1.7    1
(BX901945) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    46   1.7    1
(AC173265) Bos taurus clone CH240-181L10, WORKING DRAFT SEQU...    46   1.7    1
(AQ855032) CpG2068B CpIOWAgDNA1 Cryptosporidium parvum genom...    46   1.7    1
(EJ624568) 1092963131690 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.7    1
(EJ609086) 1092962030117 Global-Ocean-Sampling_GS-29-01-01-1...    46   1.7    1
(EI868202) CAH1-38F19TV CAA1Ba Cicer arietinum genomic clone...    46   1.7    1
(DU669900) Bst002442 lambda03 Boechera stricta genomic clone...    46   1.7    1
(BZ257756) CH230-429M5.TJ CHORI-230 Segment 2 Rattus norvegi...    46   1.7    1
(EC821200) SME00004429 esmbsro2 Sawyeria marylandensis cDNA,...    46   1.7    1
(DW192882) EST09152 Larval Stage 1 Aedes aegypti cDNA clone ...    46   1.7    1
(CB372593) TgESTzyg73c04.x1 TgME49 3 day invitro bradyzoite ...    46   1.7    1
(BM161386) EST563909 PyBS Plasmodium yoelii yoelii cDNA clon...    46   1.7    1
(AC152406) Medicago truncatula chromosome 8 clone mth2-71o20...    36   1.7    5
(AC149298) Populus trichocarpa clone Pop1-021H24, complete s...    40   1.8    7
(AC014140) Drosophila melanogaster, *** SEQUENCING IN PROGRE...    38   2.1    5
(AC147713) Medicago truncatula clone mth2-138b11, complete s...    34   2.1    5
(AC233088) Medicago truncatula clone mth2-75o14, WORKING DRA...    40   2.1    4
(AE014848) Plasmodium falciparum 3D7 chromosome 12, section ...    32   2.2    10
(AC224444) Bos taurus clone CH240-484H6, WORKING DRAFT SEQUE...    38   2.3    5
(AP008218) Oryza sativa (japonica cultivar-group) genomic DN...    34   2.3    2
(BJ390081) Dictyostelium discoideum cDNA clone:dds21i06, 5' ...    40   2.6    2
(CP000826) Serratia proteamaculans 568, complete genome.           34   2.6    2
(BJ358817) Dictyostelium discoideum cDNA clone:ddc11c16, 5' ...    40   2.7    2
(AM459646) Vitis vinifera contig VV78X085854.9, whole genome...    40   2.7    4
(AM468716) Vitis vinifera contig VV78X263895.19, whole genom...    42   2.9    3
(BJ360976) Dictyostelium discoideum cDNA clone:ddc8i21, 5' e...    40   2.9    2
(BJ390223) Dictyostelium discoideum cDNA clone:dds21i17, 5' ...    40   3.0    2
(CR376801) Zebrafish DNA sequence from clone CH211-13K18 in ...    34   3.2    5
(AL929353) Plasmodium falciparum strain 3D7, chromosome 5, s...    32   3.2    2
(CW754545) OG_BBa0056F13.r OG_BBa Oryza glaberrima genomic c...    42   3.2    2
(AC157110) Bos taurus clone CH240-70K6, WORKING DRAFT SEQUEN...    34   3.3    2
(CR376752) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    38   3.3    7
(CU457400) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   3.4    4
(CR381704) Zebrafish DNA sequence from clone CH211-202F6 in ...    32   3.4    6
(AL731874) Oryza sativa chromosome 12, . BAC OSJNBb0077C18 o...    34   3.4    2
(AG593057) Mus musculus molossinus DNA, clone:MSMg01-522I07....    38   3.4    2
(AG586876) Mus musculus molossinus DNA, clone:MSMg01-514F24....    38   3.5    2
(CL170319) 104_371_10813715_148_31790_035 Sorghum methylatio...    38   3.5    2
(CC906813) t030j11ba.r1 TAMBT Bos taurus genomic clone t030j...    42   3.5    2
(CW537410) OP__Ba0035M11.f OP__Ba Oryza punctata genomic clo...    36   3.6    2
(AL157903) Human DNA sequence from clone RP4-683H8 on chromo...    34   3.6    6
(CR352243) Zebrafish DNA sequence from clone DKEYP-117H8 in ...    38   3.6    4
(AC060756) Homo sapiens chromosome 9 clone RP11-598F17 map 9...    36   3.6    6
(EJ467187) 1095403375706 Global-Ocean-Sampling_GS-28-01-01-1...    42   3.6    2
(BX322637) Zebrafish DNA sequence from clone DKEY-22A1 in li...    36   3.7    6
(CW525181) OP__Ba0049P03.f OP__Ba Oryza punctata genomic clo...    36   3.7    2
(DX405988) GR_Sa0005C06.b1 Gossypium raimondii WGS library G...    34   3.7    2
(CU208408) Equus caballus GSS, BAC clone CH241-325F4, T7 end...    32   3.8    3
(AM469625) Vitis vinifera contig VV78X182162.10, whole genom...    32   3.9    2
(CW629409) OP__Ba0052E03.f OP__Ba Oryza punctata genomic clo...    36   3.9    2
(BX548174) Prochlorococcus marinus MED4 complete genome.           32   3.9    20
(DQ336395) Dictyostelium citrinum mitochondrion, complete ge...    34   4.1    6
(EU520643) Mastigoproctus giganteus mitochondrion, complete ...    44   4.2    3
(CP000721) Clostridium beijerinckii NCIMB 8052, complete gen...    38   4.3    17
(AC156972) Bos taurus clone CH240-64H21, WORKING DRAFT SEQUE...    38   4.4    6
(DU051427) 146958 Tomato HindIII BAC Library Solanum lycoper...    32   4.4    2
(DU881259) 388296 Tomato HindIII BAC Library Solanum lycoper...    34   4.6    2
(AE014827) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   4.7    6
(AL954709) Zebrafish DNA sequence from clone CH211-142N21 in...    36   5.1    5
(AC116986) Dictyostelium discoideum chromosome 2 map 2234041...    30   5.4    13
(CL044471) CH216-61F9_Sp6.1 CH216 Xenopus (Silurana) tropica...    36   5.9    2
(CR382399) Plasmodium falciparum chromosome 6, complete sequ...    32   6.5    10
(CR382398) Plasmodium falciparum chromosome 6, complete sequ...    36   6.5    9
(AC027753) Homo sapiens chromosome 13 clone RP11-504H18 map ...    36   6.5    6
(AE014838) Plasmodium falciparum 3D7 chromosome 11 section 3...    34   6.7    7
(AE014850) Plasmodium falciparum 3D7 chromosome 12, section ...    34   6.8    7
(AL445251) Human DNA sequence from clone RP11-704L16 on chro...    38   6.8    5
(AC192285) Gallus gallus BAC clone CH261-106O6 from chromoso...    44   6.8    1
(AC188448) Gallus gallus BAC clone CH261-141E5 from chromoso...    44   6.8    1
(AC163714) Gallus gallus BAC clone TAM31-13E5 from chromosom...    44   6.8    1
(AB175058) Danio rerio DNA, integration site for T2KSAG, all...    44   6.8    1
(AC160535) Mus musculus chromosome 7, clone RP24-298A23, com...    44   6.8    1
(AC133503) Mus musculus BAC clone RP24-301O19 from chromosom...    44   6.8    1
(AC117225) Mus musculus BAC clone RP23-366F3 from 19, comple...    44   6.8    1
(AC111051) Mus musculus chromosome 7, clone RP24-163C20, com...    44   6.8    1
(AC099603) Mus musculus chromosome 12, clone RP23-333M19, co...    44   6.8    1
(AC214622) Macaca mulatta  BAC CH250-134D3 (Children's Hospi...    44   6.8    1
(AC204334) Rhesus Macaque  BAC CH250-513H2 () complete seque...    44   6.8    1
(CS755793) Sequence 23789 from Patent WO2005083127.                44   6.8    1
(CS741911) Sequence 9907 from Patent WO2005083127.                 44   6.8    1
(Z77663) Caenorhabditis elegans Cosmid F53F4.                      44   6.8    1
(AJ577131) Mytilus edulis MT-20 gene for metallothionein.          44   6.8    1
(AL591042) Human DNA sequence from clone RP11-480L11 on chro...    44   6.8    1
(AL139039) Human DNA sequence from clone RP11-360O19 on chro...    44   6.8    1
(AC147800) Mus musculus chromosome 19 clone RP23-18L14 map 1...    44   6.8    1
(AC133806) Rattus norvegicus clone CH230-200M18, *** SEQUENC...    44   6.8    1
(AC128352) Rattus norvegicus clone CH230-147O15, WORKING DRA...    44   6.8    1
(AC098756) Rattus norvegicus clone CH230-68D12, *** SEQUENCI...    44   6.8    1
(AC098168) Rattus norvegicus clone CH230-145D21, *** SEQUENC...    44   6.8    1
(CU929078) Zebrafish DNA sequence *** SEQUENCING IN PROGRESS...    44   6.8    1
(AC076970) Homo sapiens chromosome 3 clone RP11-40N22, WORKI...    44   6.8    1
(CU468816) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f...    44   6.8    1
(AL138877) Human DNA sequence *** SEQUENCING CANCELLED *** f...    44   6.8    1
(AC220840) Bos taurus clone CH240-343L1, WORKING DRAFT SEQUE...    44   6.8    1
(AC196851) Sorghum bicolor clone SB_BBc0142K03, WORKING DRAF...    44   6.8    1
(AC184213) Strongylocentrotus purpuratus clone R3-25K5, WORK...    44   6.8    1
(AC178359) Strongylocentrotus purpuratus clone R3-3105O06, W...    44   6.8    1
(AC176684) Strongylocentrotus purpuratus clone R3-3088D13, W...    44   6.8    1
(AC175929) Strongylocentrotus purpuratus clone R3-15N9, WORK...    44   6.8    1
(AC021626) Homo sapiens clone RP11-391I2, WORKING DRAFT SEQU...    44   6.8    1
(AK158596) Mus musculus visual cortex cDNA, RIKEN full-lengt...    44   6.8    1
(AZ843671) 2M0142F11R Mouse 10kb plasmid UUGC1M library Mus ...    44   6.8    1
(AZ680935) ENTHQ31TF Entamoeba histolytica Sheared DNA Entam...    44   6.8    1
(AY759785) CH250-77i14 TJ Macaca mulatta genomic DNA Macaca ...    44   6.8    1
(FI113826) MUGQ_CH252P484B17T7_CH0177_079 CHORI-252 Vervet M...    44   6.8    1
(ET704836) CHO_OF088xa18r1.ab1 CHO_OF Nicotiana tabacum geno...    44   6.8    1
(ET015006) MUGQ_CH252P318P17Sp6_CP594_065 CHORI-252 Vervet M...    44   6.8    1
(ER915066) AH_PBa0050B17.b1 AH_PBa Amaranthus hypochondriacu...    44   6.8    1
(AM620180) Entamoeba invadens IP1 GSS, clone inv126d11.p1k.        44   6.8    1
(AM615830) Entamoeba invadens IP1 GSS, clone inv066f05.p1k.        44   6.8    1
(EJ091828) 1095460198059 Global-Ocean-Sampling_GS-26-01-01-1...    44   6.8    1
(EI870770) CAH1-37A1TV CAA1Ba Cicer arietinum genomic clone ...    44   6.8    1
(ED673088) GM_WBb0002H17.f GM_WBb Glycine max genomic clone ...    44   6.8    1
(DU702323) Bst034850 lambda03 Boechera stricta genomic clone...    44   6.8    1
(CW312415) 104_802_11470745_148_35778_075 Sorghum methylatio...    44   6.8    1
(CE154785) tigr-gss-dog-17000371367252 Dog Library Canis lup...    44   6.8    1
(BZ398412) EINDM60TR EI_10_12_KB Entamoeba invadens genomic ...    44   6.8    1
(BZ385737) EINDG88TF EI_10_12_KB Entamoeba invadens genomic ...    44   6.8    1
(EH016250) USDA-FP_188770 Lysiphlebus testaceipes adult whol...    44   6.8    1
(AU062244) Dictyostelium discoideum slug cDNA, clone SLI658.       44   6.8    1
(CF483152) POL1_12_D03.b1_A002 Pollen Sorghum bicolor cDNA c...    44   6.8    1
(CF427850) PH1_11_E07.b1_A002 Phosphorous-deficient seedling...    44   6.8    1
(CF268372) TgESTzyj24b04.y1 TgMAS Tachyzoite cDNA Library To...    44   6.8    1
(CR931693) Streptococcus pneumoniae strain 34372 (serotype 2...    44   6.8    1
(CR931692) Streptococcus pneumoniae strain 1982/45 (serotype...    44   6.8    1
(AM285320) Spiroplasma citri GII3-3X chromosome, contig Cont...    36   7.1    3
(AC092216) Drosophila melanogaster, chromosome 2L, region 25...    42   7.1    3
(BX640500) Zebrafish DNA sequence from clone RP71-86I11 in l...    36   7.3    6
(AC189548) Brassica rapa subsp. pekinensis clone KBrH005A08,...    32   7.3    7
(AC225609) Callithrix jacchus BAC clone CH259-161K20 from ch...    32   7.3    6
(AM428359) Vitis vinifera contig VV78X076799.6, whole genome...    38   7.4    2
(AE014816) Plasmodium falciparum 3D7 chromosome 14 section 1...    36   7.8    8
(CE599836) tigr-gss-dog-17000366630281 Dog Library Canis lup...    40   8.1    2
(AC093206) Homo sapiens chromosome 5 clone CTC-448D22, compl...    32   8.2    7
(EA048110) Sequence 1 from patent US 7154021.                      32   8.2    7
(AX196294) Sequence 1 from Patent WO0151627.                       32   8.2    7
(GP062383) Sequence 1 from patent US 7485770.                      32   8.2    7
(AC190149) Pan troglodytes BAC clone CH251-679F3 from chromo...    40   8.2    5
(CJ824761) Triticum aestivum cDNA clone:whatlal15n08, 5' end.      34   8.2    2
(AC134664) Mus musculus clone RP23-153A24, WORKING DRAFT SEQ...    40   8.3    3
(CJ825098) Triticum aestivum cDNA clone:whatlal16n08, 5' end.      34   8.3    2
(AL928838) Zebrafish DNA sequence from clone CH211-148F13.         34   8.6    6
(AP006404) Lotus japonicus genomic DNA, chromosome 5, clone:...    34   8.7    6
(AC022988) Homo sapiens chromosome 4 clone RP11-637O11 map 4...    38   9.2    5
(AU263391) Dictyostelium discoideum vegetative cDNA clone:VS...    40   9.3    2

>(BJ324604) Dictyostelium discoideum cDNA clone:dda7i06, 5' end,
           single read.
          Length = 669

 Score = 1318 bits (665), Expect = 0.0
 Identities = 668/668 (100%)
 Strand = Plus / Plus


Query: 1   agtacaatagtnaaccattttcatataataattcaacatttaatttttcaaagaataaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   agtacaatagtnaaccattttcatataataattcaacatttaatttttcaaagaataaat 60


Query: 61  atcatggtaatcatggtaatcaccataagagaaatgaaaaaccaattcatattccattat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  atcatggtaatcatggtaatcaccataagagaaatgaaaaaccaattcatattccattat 120


Query: 121 ggttagaaggacattataccagtaaggatttatcaagtttatcatttaatagagagattg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggttagaaggacattataccagtaaggatttatcaagtttatcatttaatagagagattg 180


Query: 181 aattgttttcacaatggttggaaccaagtgagttggagtcaagaatacgacaaaagataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aattgttttcacaatggttggaaccaagtgagttggagtcaagaatacgacaaaagataa 240


Query: 241 taagagatttggatgctatagttaaatcaaattggccaaaagcaaatgtagtggtatttg 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 taagagatttggatgctatagttaaatcaaattggccaaaagcaaatgtagtggtatttg 300


Query: 301 gttccttttcttcaaatctattcattccttccagtgatattgatattcaaatctctggca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 gttccttttcttcaaatctattcattccttccagtgatattgatattcaaatctctggca 360


Query: 361 ttaacaatgctgaaagtgtaaataaatacaatcaaaatccaattagagacctctttgata 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 ttaacaatgctgaaagtgtaaataaatacaatcaaaatccaattagagacctctttgata 420


Query: 421 taataattagaaatcatcaagactctttcataaatgtacggaatattttcggtgctaaag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 taataattagaaatcatcaagactctttcataaatgtacggaatattttcggtgctaaag 480


Query: 481 ttccaatcattaaaatgacaagttctcattcccactacaatattgatatttgttttgata 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 ttccaatcattaaaatgacaagttctcattcccactacaatattgatatttgttttgata 540


Query: 541 ctccaaatggtattgaaaatactgctgttgttaaaggtttattaaaacaatataaatcaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 541 ctccaaatggtattgaaaatactgctgttgttaaaggtttattaaaacaatataaatcaa 600


Query: 601 tgagaacattacttttaataataaaattctttttacatcaaaataatttaaatgaaacat 660
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 601 tgagaacattacttttaataataaaattctttttacatcaaaataatttaaatgaaacat 660


Query: 661 atactggt 668
           ||||||||
Sbjct: 661 atactggt 668

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 102105510
Number of Hits to DB: 1,014,730,438
Number of extensions: 64800583
Number of successful extensions: 5658785
Number of sequences better than 10.0: 201
Length of query: 668
Length of database: 101,790,757,118
Length adjustment: 24
Effective length of query: 644
Effective length of database: 99,340,224,878
Effective search space: 63975104821432
Effective search space used: 63975104821432
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)

Query= Contig-U02528-1 (Contig-U02528-1Q) /CSM_Contig/Contig-U02528-1Q.Seq.d
         (668 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298_1250(AE014298|pid:none) Drosophila melanogaster chromos...   110   3e-23
AE014298_1252(AE014298|pid:none) Drosophila melanogaster chromos...   110   3e-23
CU928165_45(CU928165|pid:none) Kluyveromyces thermotolerans stra...   108   1e-22
BC076872_1(BC076872|pid:none) Xenopus laevis hypothetical protei...   108   2e-22
(Q8NDF8) RecName: Full=PAP-associated domain-containing protein ...   107   2e-22
BC080314_1(BC080314|pid:none) Mus musculus PAP associated domain...   107   3e-22
(Q9HFW3) RecName: Full=Poly(A) RNA polymerase protein 1;        ...   106   7e-22
CU928175_88(CU928175|pid:none) Zygosaccharomyces rouxii strain C...   105   1e-21
BC133101_1(BC133101|pid:none) Danio rerio similar to PAP-associa...   103   5e-21
AK152550_1(AK152550|pid:none) Mus musculus bone marrow macrophag...   102   1e-20
BC143882_1(BC143882|pid:none) Homo sapiens polymerase (DNA direc...   102   1e-20
BC156329_1(BC156329|pid:none) Synthetic construct Homo sapiens c...   102   1e-20
AJ720115_1(AJ720115|pid:none) Gallus gallus mRNA for hypothetica...   101   2e-20
AJ439353_8(AJ439353|pid:none) Anopheles gambiae BAC clone 30E5.       101   2e-20
CR382121_310(CR382121|pid:none) Kluyveromyces lactis strain NRRL...   100   4e-20
S60401(S60401;S63275;S69597) nuclear division protein TRF5 - yea...   100   5e-20
S62544(S62544;T37588)hypothetical protein SPAC12G12.13c - fissio...    98   2e-19
CP000587_112(CP000587|pid:none) Ostreococcus lucimarinus CCE9901...    98   2e-19
(Q9UTN3) RecName: Full=Poly(A) RNA polymerase cid14;          Sh...    98   2e-19
FJ178779_1(FJ178779|pid:none) Trypanosoma brucei nuclear non-can...    97   3e-19
AC159438_10(AC159438|pid:none) Trypanosoma brucei chromosome 8 c...    97   4e-19
AL844509_320(AL844509|pid:none) Plasmodium falciparum 3D7 chromo...    96   7e-19
AB257288_1(AB257288|pid:none) Oryza sativa Japonica Group mRNA f...    96   7e-19
AP008207_2098(AP008207|pid:none) Oryza sativa (japonica cultivar...    96   1e-18
AM910994_204(AM910994|pid:none) Plasmodium knowlesi strain H chr...    94   3e-18
AB017066_11(AB017066|pid:none) Arabidopsis thaliana genomic DNA,...    92   1e-17
CR382132_1248(CR382132|pid:none) Yarrowia lipolytica strain CLIB...    92   1e-17
BT002764_1(BT002764|pid:none) Arabidopsis thaliana clone C105387...    92   1e-17
CR380959_161(CR380959|pid:none) Candida glabrata strain CBS138 c...    92   2e-17
FJ610054_1(FJ610054|pid:none) Caenorhabditis elegans germline de...    90   5e-17
AK223410_1(AK223410|pid:none) Homo sapiens mRNA for PAP associat...    89   2e-16
CP001323_322(CP001323|pid:none) Micromonas sp. RCC299 chromosome...    87   4e-16
AM910996_438(AM910996|pid:none) Plasmodium knowlesi strain H chr...    86   8e-16
BC144797_1(BC144797|pid:none) Mus musculus PAP associated domain...    86   1e-15
FM992688_503(FM992688|pid:none) Candida dubliniensis CD36 chromo...    80   4e-14
AL833922_1(AL833922|pid:none) Homo sapiens mRNA; cDNA DKFZp434I2...    79   1e-13
CR940348_651(CR940348|pid:none) Theileria annulata strain Ankara...    75   1e-12
AM475438_4(AM475438|pid:none) Vitis vinifera contig VV78X193346....    74   3e-12
AL590446_153(AL590446|pid:none) chromosome VI of strain GB-M1 of...    73   7e-12
AM040166_1(AM040166|pid:none) Drosophila simulans partial mRNA f...    73   7e-12
CT005246_74(CT005246|pid:none) Leishmania major strain Friedlin,...    73   9e-12
AM502225_76(AM502225|pid:none) Leishmania infantum chromosome 7.       73   9e-12
AP007151_85(AP007151|pid:none) Aspergillus oryzae RIB40 genomic ...    72   1e-11
AM494944_78(AM494944|pid:none) Leishmania braziliensis chromosom...    70   6e-11
T00875(T00875;G84892)hypothetical protein At2g45620 [imported] -...    70   7e-11
BT067404_1(BT067404|pid:none) Zea mays full-length cDNA clone ZM...    68   3e-10
AP008216_261(AP008216|pid:none) Oryza sativa (japonica cultivar-...    67   4e-10
AC117070_26(AC117070|pid:none) Dictyostelium discoideum chromoso...    67   6e-10
CP001575_28(CP001575|pid:none) Micromonas sp. RCC299 chromosome ...    63   7e-09
AF089897_1(AF089897|pid:none) Homo sapiens topoisomerase-related...    58   2e-07
(O13798) RecName: Full=Caffeine-induced protein 16;  &CU329670_8...    57   4e-07
BT061795_1(BT061795|pid:none) Zea mays full-length cDNA clone ZM...    54   3e-06
AK229682_1(AK229682|pid:none) Arabidopsis thaliana mRNA for hypo...    54   4e-06
CP001328_438(CP001328|pid:none) Micromonas sp. RCC299 chromosome...    53   9e-06
CR933643_1(CR933643|pid:none) Homo sapiens mRNA; cDNA DKFZp686C1...    50   5e-05
AK055948_1(AK055948|pid:none) Homo sapiens cDNA FLJ31386 fis, cl...    50   5e-05
(Q96N57) RecName: Full=Zinc finger CCHC domain-containing protei...    50   5e-05
AL137849_7(AL137849|pid:none) Human DNA sequence from clone RP11...    50   5e-05
AB051498_1(AB051498|pid:none) Homo sapiens mRNA for KIAA1711 pro...    50   5e-05
(Q5BLK4) RecName: Full=Zinc finger CCHC domain-containing protei...    49   1e-04
AP007164_596(AP007164|pid:none) Aspergillus oryzae RIB40 genomic...    49   1e-04
BC023438_1(BC023438|pid:none) Mus musculus zinc finger, CCHC dom...    49   1e-04
BC023880_1(BC023880|pid:none) Mus musculus zinc finger, CCHC dom...    49   1e-04
BC043111_1(BC043111|pid:none) Mus musculus zinc finger, CCHC dom...    49   1e-04
AY562976_1(AY562976|pid:none) Drosophila melanogaster isolate mk...    49   2e-04
CP000586_305(CP000586|pid:none) Ostreococcus lucimarinus CCE9901...    48   2e-04
EU974567_1(EU974567|pid:none) Zea mays clone 453093 unknown mRNA.      48   3e-04
AY655140_1(AY655140|pid:none) Xenopus laevis cytoplasmic poly(A)...    46   9e-04
(Q6DFA8) RecName: Full=Poly(A) RNA polymerase GLD2-B;          S...    46   9e-04
BC136215_1(BC136215|pid:none) Xenopus tropicalis PAP associated ...    46   9e-04
AM419010_1(AM419010|pid:none) Xenopus laevis mRNA for cytoplasmi...    46   9e-04
AY562984_1(AY562984|pid:none) Drosophila mauritiana isolate mkg-...    44   0.003
CR626903_4(CR626903|pid:none) Zebrafish DNA sequence from clone ...    44   0.004
AP005524_18(AP005524|pid:none) Oryza sativa Japonica Group genom...    44   0.004
BT044483_1(BT044483|pid:none) Drosophila melanogaster AT19242 fu...    43   0.007
CP001575_77(CP001575|pid:none) Micromonas sp. RCC299 chromosome ...    43   0.007
AY562981_1(AY562981|pid:none) Drosophila simulans isolate mkg-r1...    43   0.007
AE014188_314(AE014188|pid:none) Plasmodium falciparum 3D7 chromo...    43   0.007
CT005265_50(CT005265|pid:none) Leishmania major strain Friedlin,...    42   0.013
AY562978_1(AY562978|pid:none) Drosophila simulans isolate mkg-p ...    42   0.013
AY572493_1(AY572493|pid:none) Drosophila simulans clone sim_mkgp...    42   0.013
AY421967_2(AY421967|pid:none) Cryptococcus gattii strain ATCC 32...    42   0.021
AY710430_13(AY710430|pid:none) Cryptococcus gattii strain WM276 ...    42   0.021
EU969271_1(EU969271|pid:none) Zea mays clone 327805 unknown mRNA.      42   0.021
AE017344_577(AE017344|pid:none) Cryptococcus neoformans var. neo...    41   0.028
AL157735_9(AL157735|pid:none) Arabidopsis thaliana DNA chromosom...    41   0.028
AF542530_12(AF542530|pid:none) Cryptococcus neoformans var. neof...    41   0.028
(O74518) RecName: Full=Poly(A) RNA polymerase cid12;          Sh...    41   0.037
AM910996_497(AM910996|pid:none) Plasmodium knowlesi strain H chr...    41   0.037
BA000023_861(BA000023|pid:none) Sulfolobus tokodaii str. 7 DNA, ...    40   0.048
D83776_1(D83776|pid:none) Human mRNA for KIAA0191 gene, partial ...    40   0.062
AL626783_2(AL626783|pid:none) Mouse DNA sequence from clone RP23...    40   0.062
CP001329_6(CP001329|pid:none) Micromonas sp. RCC299 chromosome 9...    40   0.062
(Q5TAX3) RecName: Full=Zinc finger CCHC domain-containing protei...    40   0.062
CR860282_1(CR860282|pid:none) Pongo abelii mRNA; cDNA DKFZp459G1...    40   0.062
BC150791_1(BC150791|pid:none) Mus musculus zinc finger, CCHC dom...    40   0.062
BC131734_1(BC131734|pid:none) Homo sapiens zinc finger, CCHC dom...    40   0.062
AK220327_1(AK220327|pid:none) Mus musculus mRNA for mKIAA0191 pr...    40   0.062
AK134388_1(AK134388|pid:none) Mus musculus 13 days embryo male t...    40   0.062
AL389894_50(AL389894|pid:none) Leishmania major Friedlin chromos...    40   0.081
AM502222_50(AM502222|pid:none) Leishmania infantum chromosome 4.       39   0.11
AM910990_155(AM910990|pid:none) Plasmodium knowlesi strain H chr...    39   0.11
AM419011_1(AM419011|pid:none) Mus musculus mRNA for cytoplasmic ...    39   0.11
BC047581_1(BC047581|pid:none) Homo sapiens PAP associated domain...    39   0.11
AY029069_1(AY029069|pid:none) Leishmania tarentolae 3' terminal ...    38   0.24
AM502232_100(AM502232|pid:none) Leishmania infantum chromosome 14.     38   0.31
AM494951_94(AM494951|pid:none) Leishmania braziliensis chromosom...    38   0.31
CP000660_445(CP000660|pid:none) Pyrobaculum arsenaticum DSM 1351...    37   0.40
AM502254_276(AM502254|pid:none) Leishmania infantum chromosome 36.     37   0.40
BC143706_1(BC143706|pid:none) Homo sapiens PAP associated domain...    37   0.53
BT083965_1(BT083965|pid:none) Zea mays full-length cDNA clone ZM...    37   0.53
AK073619_1(AK073619|pid:none) Oryza sativa Japonica Group cDNA c...    37   0.69
AC159450_44(AC159450|pid:none) Trypanosoma brucei chromosome 7 c...    37   0.69
AK095818_1(AK095818|pid:none) Homo sapiens cDNA FLJ38499 fis, cl...    37   0.69
AP003251_16(AP003251|pid:none) Oryza sativa Japonica Group genom...    37   0.69
(Q91YI6) RecName: Full=Poly(A) RNA polymerase GLD2;          Sho...    37   0.69
AP009552_1461(AP009552|pid:none) Microcystis aeruginosa NIES-843...    37   0.69
(Q2HJ44) RecName: Full=Poly(A) RNA polymerase GLD2;          EC=...    37   0.69
AY029070_1(AY029070|pid:none) Trypanosoma brucei 3' terminal uri...    37   0.69
EU009113_1(EU009113|pid:none) Tetrahymena thermophila RNA-depend...    36   0.90
AP003635_17(AP003635|pid:none) Oryza sativa Japonica Group genom...    36   0.90
AE006641_1127(AE006641|pid:none) Sulfolobus solfataricus P2, com...    36   0.90
AC105744_5(AC105744|pid:none) Oryza sativa (japonica cultivar-gr...    35   1.5
AL626783_3(AL626783|pid:none) Mouse DNA sequence from clone RP23...    35   1.5
AK049279_1(AK049279|pid:none) Mus musculus ES cells cDNA, RIKEN ...    35   1.5
AL138849_2(AL138849|pid:none) Human DNA sequence from clone RP5-...    35   1.5
AL832193_1(AL832193|pid:none) Homo sapiens mRNA; cDNA DKFZp686C0...    35   2.6
T29912(T29912) hypothetical protein F59A3.9 - Caenorhabditis ele...    35   2.6
CP000395_693(CP000395|pid:none) Borrelia afzelii PKo, complete g...    35   2.6
CR940347_305(CR940347|pid:none) Theileria annulata strain Ankara...    35   2.6
AE014187_26(AE014187|pid:none) Plasmodium falciparum 3D7 chromos...    35   2.6
AK055546_1(AK055546|pid:none) Homo sapiens cDNA FLJ30984 fis, cl...    35   2.6
CP001056_4(CP001056|pid:none) Clostridium botulinum B str. Eklun...    35   2.6
(Q9VYS4) RecName: Full=Poly(A) RNA polymerase gld-2 homolog B;  ...    34   3.4
AM494941_54(AM494941|pid:none) Leishmania braziliensis chromosom...    34   3.4
AK241138_1(AK241138|pid:none) Oryza sativa Japonica Group cDNA, ...    34   3.4
(A6LPB4) RecName: Full=DNA replication and repair protein recF; ...    34   4.5
AM393021_1(AM393021|pid:none) Synthetic construct Homo sapiens c...    34   4.5
AC116979_9(AC116979|pid:none) Dictyostelium discoideum chromosom...    34   4.5
AL832026_1(AL832026|pid:none) Homo sapiens mRNA; cDNA DKFZp451K1...    34   4.5
AF500820_1(AF500820|pid:none) Solanum deflexum NADH dehydrogenas...    34   4.5
AF450319_1(AF450319|pid:none) Striped bass reovirus segment 3 he...    33   5.8
CP001576_202(CP001576|pid:none) Micromonas sp. RCC299 chromosome...    33   5.8
AL929603_126(AL929603|pid:none) Trypanosoma brucei chromosome 1,...    33   5.8
(P37822) RecName: Full=Phospho-2-dehydro-3-deoxyheptonate aldola...    33   5.8
BC032456_1(BC032456|pid:none) Homo sapiens zinc finger, CCHC dom...    33   5.8
AF528097_32(AF528097|pid:none) Clostridium tetani E88 plasmid pE...    33   5.8
FB835995_1(FB835995|pid:none) Sequence 55268 from Patent WO20080...    33   5.8
CT005260_210(CT005260|pid:none) Leishmania major strain Friedlin...    33   5.8
CP000852_1535(CP000852|pid:none) Caldivirga maquilingensis IC-16...    33   5.8
(Q9V302) RecName: Full=CCA-adding enzyme;          EC=2.7.7.25; ...    33   5.8
(A7GSJ8) RecName: Full=Exodeoxyribonuclease 7 large subunit;    ...    33   7.6
FM992689_201(FM992689|pid:none) Candida dubliniensis CD36 chromo...    33   7.6
BC139545_1(BC139545|pid:none) Danio rerio si:ch211-225b11.1, mRN...    33   7.6
CR626903_5(CR626903|pid:none) Zebrafish DNA sequence from clone ...    33   7.6
CP000804_490(CP000804|pid:none) Roseiflexus castenholzii DSM 139...    33   9.9
AE015928_168(AE015928|pid:none) Bacteroides thetaiotaomicron VPI...    33   9.9
CP000885_3891(CP000885|pid:none) Clostridium phytofermentans ISD...    33   9.9
AM494958_205(AM494958|pid:none) Leishmania braziliensis chromoso...    33   9.9
CP000246_1729(CP000246|pid:none) Clostridium perfringens ATCC 13...    33   9.9
AC117081_30(AC117081|pid:none) Dictyostelium discoideum chromoso...    33   9.9
BX641077_1(BX641077|pid:none) Homo sapiens mRNA; cDNA DKFZp686E2...    33   9.9

>AE014298_1250(AE014298|pid:none) Drosophila melanogaster chromosome
           X, complete sequence.  &AE014298_1251(AE014298|pid:none)
           &BT010282_1(BT010282|pid:none)
          Length = 1001

 Score =  110 bits (276), Expect = 3e-23
 Identities = 58/171 (33%), Positives = 104/171 (60%), Gaps = 1/171 (0%)
 Frame = +3

Query: 159 LSFNREIELFSQWLEPSELESRIRQKIIRDLDAIVKSNWPKANVVVFGSFSSNLFIPSSD 338
           +  + EIE F Q++ P+  E  IR ++++ ++A+V S WP+A V +FGSF + LF+P+SD
Sbjct: 269 IGLHEEIEHFYQYVLPTPCEHAIRNEVVKRIEAVVHSIWPQAVVEIFGSFRTGLFLPTSD 328

Query: 339 IDIQISGINNAESVNKYNQNPIRDL-FDIIIRNHQDSFINVRNIFGAKVPIIKMTSSHSH 515
           ID+ + G+        + + P+R L F+++ R   ++   VR +  A VPIIK+T   +
Sbjct: 329 IDLVVLGL--------WEKLPLRTLEFELVSRGIAEA-CTVRVLDKASVPIIKLTDRETQ 379

Query: 516 YNIDICFDTPNGIENTAVVKGLLKQYKSMRTLLLIIKFFLHQNNLNETYTG 668
             +DI F+  +G+++  ++K   + Y  +  L+L++K FL   +LNE +TG
Sbjct: 380 VKVDISFNMQSGVQSAELIKKFKRDYPVLEKLVLVLKQFLLLRDLNEVFTG 430

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 994,614,923
Number of extensions: 19461252
Number of successful extensions: 53180
Number of sequences better than 10.0: 162
Number of HSP's gapped: 53063
Number of HSP's successfully gapped: 173
Length of query: 222
Length of database: 1,051,180,864
Length adjustment: 124
Effective length of query: 98
Effective length of database: 649,847,548
Effective search space: 63685059704
Effective search space used: 63685059704
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 31 (16.5 bits)

 psg: 0.75  gvh: 0.32  alm: 0.43  top: 0.53  tms: 0.00  mit: 0.29  mip: 0.06
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 44.0 %: cytoplasmic
	 28.0 %: nuclear
	 16.0 %: mitochondrial
	  8.0 %: plasma membrane
	  4.0 %: peroxisomal

>> prediction for Contig-U02528-1 is cyt