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Dicty_cDB
Contig List | Clone List | cDNA Library List
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NBDC - LSDB Archive
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Dicty_cDB
Contig List | Clone List | cDNA Library List
Atlas
Atlas | Atlas Image List
Contig-U14249-1
Contig ID Contig-U14249-1
Contig update 2002.12.18
Contig sequence 
>Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Contig-U14249-1Q.Seq.d
ACTGTTGGCCTACTGGNATTAACAATCAAATTAACATATTTAATAATTAA
ATAACTTTTTTTTAATAATAAAAAAATAACAATAATTTAAACTTTCAAAA
TGAAATTCTTAGCAGTCTTATGTATTTTTATCTTAACAGTTGCTTTTGCT
TATGCAAATCATTATGGTTGTTATACTAATAATCCATGTGGTGCCGGTAG
AATTTGCTATACCATGAAGGGTTCTTGTAATTGTATTGAAATTTCAAAAT
GCTTTGATGTAACATTAGAATCTAGTAAAAAATCAGAATGGGACTTAAAC
GGAACTCATTTTGCTCAATATGATTTCCAAATTAAAAATAATAATTTAGT
TACTGATATCTCAAATCTCTTCATTGGTGTTAATCCAAACATTGGTGCAA
AGGATTATGTCCAAATTTGGAATATCAGAAGAATGGAAAATGGTGAACTT
ACTCTCCCAACTTACATTCCAGCAATTGAAAGAAACACTACCTTTGGTTT
TGGTGCAATTATTGCAGGTCACAATGAACCAAACTNNNNNNNNN
Gap no gap
Contig length 544
Chromosome number (1..6, M) 3
Chromosome length 6358359
Start point 1062845
End point 1062328
Strand (PLUS/MINUS) MINUS
Number of clones 1
Number of EST 1
Link to clone list U14249
List of clone(s) 

est1=CHB389F,1,535
Translated Amino Acid sequence 
tvgllxltikltyliik*lffnnkkitii*TFKMKFLAVLCIFILTVAFAYANHYGCYTN
NPCGAGRICYTMKGSCNCIEISKCFDVTLESSKKSEWDLNGTHFAQYDFQIKNNNLVTDI
SNLFIGVNPNIGAKDYVQIWNIRRMENGELTLPTYIPAIERNTTFGFGAIIAGHNEPNXX
X
Translated Amino Acid sequence (All Frames) 
Frame A:
tvgllxltikltyliik*lffnnkkitii*TFKMKFLAVLCIFILTVAFAYANHYGCYTN
NPCGAGRICYTMKGSCNCIEISKCFDVTLESSKKSEWDLNGTHFAQYDFQIKNNNLVTDI
SNLFIGVNPNIGAKDYVQIWNIRRMENGELTLPTYIPAIERNTTFGFGAIIAGHNEPNXX
X


Frame B:
llaywx*qsn*hi**lnnffliikk*q*fklsk*ns*qsyvfls*qllllmqiimvvili
ihvvpvefaip*rvlvivlkfqnalm*h*nlvknqngt*telillnmisklkiii*llis
qisslvliqtlvqrimskfgiseewkmvnllsqltfqqlketlplvlvqllqvtmnqtxx
x


Frame C:
cwptginnqinifnn*itff***knnnnlnfqneilsslmyfylnscfclckslwlly**
smwcr*nllyhegfl*ly*nfkml*cniri**kirmglkrnsfcsi*fpn*k**fsy*yl
kslhwc*skhwckglcpnleyqkngkw*tyspnlhssn*kkhylwfwcnycrsq*tklxx
own update 2004. 6.10
Homology vs CSM-cDNA 
Query= Contig-U14249-1 (Contig-U14249-1Q)
/CSM_Contig/Contig-U14249-1Q.Seq.d
         (544 letters)

Database: CSM
           6905 sequences; 5,674,871 total letters


                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Conti...   965  0.0
Contig-U14355-1 (Contig-U14355-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U06235-1 (Contig-U06235-1Q) /CSM_Contig/Conti...    40  0.002
Contig-U11087-1 (Contig-U11087-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U11082-1 (Contig-U11082-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10963-1 (Contig-U10963-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10382-1 (Contig-U10382-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U10341-1 (Contig-U10341-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U09215-1 (Contig-U09215-1Q) /CSM_Contig/Conti...    38  0.010
Contig-U08024-1 (Contig-U08024-1Q) /CSM_Contig/Conti...    38  0.010

>Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Contig-U14249-1Q.Seq.d
          Length = 544

 Score =  965 bits (487), Expect = 0.0
 Identities = 520/535 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgttggcctactggnattaacaatcaaattaacatatttaataattaaataacnnnnn 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 1   actgttggcctactggnattaacaatcaaattaacatatttaataattaaataacttttt 60

                                                                       
Query: 61  nnnaataatnnnnnnntaacaataatttaaactttcaaaatgaaattcttagcagtctta 120
              ||||||       ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  tttaataataaaaaaataacaataatttaaactttcaaaatgaaattcttagcagtctta 120

                                                                       
Query: 121 tgtatttttatcttaacagttgcttttgcttatgcaaatcattatggttgttatactaat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgtatttttatcttaacagttgcttttgcttatgcaaatcattatggttgttatactaat 180

                                                                       
Query: 181 aatccatgtggtgccggtagaatttgctataccatgaagggttcttgtaattgtattgaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aatccatgtggtgccggtagaatttgctataccatgaagggttcttgtaattgtattgaa 240

                                                                       
Query: 241 atttcaaaatgctttgatgtaacattagaatctagtaaaaaatcagaatgggacttaaac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 atttcaaaatgctttgatgtaacattagaatctagtaaaaaatcagaatgggacttaaac 300

                                                                       
Query: 301 ggaactcattttgctcaatatgatttccaaattaaaaataataatttagttactgatatc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 301 ggaactcattttgctcaatatgatttccaaattaaaaataataatttagttactgatatc 360

                                                                       
Query: 361 tcaaatctcttcattggtgttaatccaaacattggtgcaaaggattatgtccaaatttgg 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tcaaatctcttcattggtgttaatccaaacattggtgcaaaggattatgtccaaatttgg 420

                                                                       
Query: 421 aatatcagaagaatggaaaatggtgaacttactctcccaacttacattccagcaattgaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 421 aatatcagaagaatggaaaatggtgaacttactctcccaacttacattccagcaattgaa 480

                                                                  
Query: 481 agaaacactacctttggttttggtgcaattattgcaggtcacaatgaaccaaact 535
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 481 agaaacactacctttggttttggtgcaattattgcaggtcacaatgaaccaaact 535


>Contig-U14355-1 (Contig-U14355-1Q) /CSM_Contig/Contig-U14355-1Q.Seq.d
          Length = 610

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 330 aattaaaaataataatttag 349
           ||||||||||||||||||||
Sbjct: 154 aattaaaaataataatttag 173


>Contig-U06235-1 (Contig-U06235-1Q) /CSM_Contig/Contig-U06235-1Q.Seq.d
          Length = 845

 Score = 40.1 bits (20), Expect = 0.002
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 329 aaattaaaaataataattta 348
           ||||||||||||||||||||
Sbjct: 747 aaattaaaaataataattta 766


  Database: CSM
    Posted date:  Jun 9, 2004  7:35 PM
  Number of letters in database: 5,674,871
  Number of sequences in database:  6905
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,359
Number of Sequences: 6905
Number of extensions: 11359
Number of successful extensions: 1970
Number of sequences better than 10.0: 838
length of query: 544
length of database: 5,674,871
effective HSP length: 16
effective length of query: 528
effective length of database: 5,564,391
effective search space: 2937998448
effective search space used: 2937998448
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 14 (28.2 bits)
dna update 2008.12.20
Homology vs DNA 
Query= Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Contig-U14249-1Q.Seq.d
         (544 letters)

Database: ddbj_A
           92,845,959 sequences; 95,242,211,685 total letters

Searching..................................................done

                                                             Score    E
Sequences producing significant alignments:                  (bits) Value  N

(BJ363042) Dictyostelium discoideum cDNA clone:ddc24b23, 5' ...   860   0.0    2
(CE581317) tigr-gss-dog-17000366263543 Dog Library Canis lup...    50   0.083  1
(AC176424) Strongylocentrotus purpuratus clone R3-12D14, WOR...    42   0.13   3
(AC178672) Strongylocentrotus purpuratus clone R3-12B18, WOR...    42   0.14   3
(AC153148) Mus musculus BAC clone RP23-189N11 from chromosom...    48   0.33   1
(AC115629) Mus musculus BAC clone RP23-74J16 from chromosome...    48   0.33   1
(BX248583) Blochmannia floridanus complete genome.                 48   0.33   1
(AC087820) Homo sapiens clone RP11-100J23, WORKING DRAFT SEQ...    44   0.34   3
(BJ338451) Dictyostelium discoideum cDNA clone:dda61g15, 5' ...    38   0.41   2
(AC208367) Populus trichocarpa clone JGIACSB21-D10, complete...    46   1.3    1
(AC148344) Medicago truncatula clone mth2-21b15, WORKING DRA...    46   1.3    1
(AZ676310) ENTLP96TR Entamoeba histolytica Sheared DNA Entam...    46   1.3    1
(AQ959735) LEREM65TFB LERE Arabidopsis thaliana genomic clon...    46   1.3    1
(AQ959734) LEREM65TF LERE Arabidopsis thaliana genomic clone...    46   1.3    1
(ER620806) 1093017406581 Global-Ocean-Sampling_GS-36-01-01-2...    46   1.3    1
(ER529505) 1093015737264 Global-Ocean-Sampling_GS-35-01-01-1...    46   1.3    1
(EJ209197) 1092345396961 Global-Ocean-Sampling_GS-27-01-01-1...    46   1.3    1
(DU879967) 272316 Tomato HindIII BAC Library Solanum lycoper...    46   1.3    1
(DU841168) 49974 Tomato HindIII BAC Library Solanum lycopers...    46   1.3    1
(CK412411) AUF_IpGil_01_h14 Ictalurus punctatus gill cDNA li...    46   1.3    1
(BJ424662) Dictyostelium discoideum cDNA clone:ddv53l04, 5' ...    46   1.3    1
(FC815127) Sr_pAMT7_02c07_T7 S. ratti mixed stage pAMP Stron...    46   1.3    1
(CP000742) Methanococcus vannielii SB, complete genome.            46   1.3    1
(BJ327232) Dictyostelium discoideum cDNA clone:dda19n18, 5' ...    34   1.6    2
(BJ336930) Dictyostelium discoideum cDNA clone:dda55m17, 5' ...    36   1.7    2
(BJ416193) Dictyostelium discoideum cDNA clone:ddv25c08, 5' ...    36   1.9    2
(ED785786) GM_WBb0167A10.r GM_WBb Glycine max genomic clone ...    36   2.3    2
(AC025766) Homo sapiens chromosome 5 clone CTC-303L1, comple...    38   3.0    2
(BJ388501) Dictyostelium discoideum cDNA clone:dds9j23, 5' e...    34   3.6    2
(CU462974) S.lycopersicum DNA sequence from clone LE_HBa-21K...    40   4.2    2
(AC104072) Homo sapiens BAC clone RP11-320H14 from 4, comple...    34   4.4    4
(AF063866) Melanoplus sanguinipes entomopoxvirus, complete g...    36   4.5    7
(BJ325589) Dictyostelium discoideum cDNA clone:dda1c18, 5' e...    38   4.5    2
(EF693945) Callorhinchus milii protocadherin gene locus, com...    44   5.1    1
(CT963113) Medicago truncatula chromosome 5 clone mth2-181g1...    44   5.1    1
(AP008207) Oryza sativa (japonica cultivar-group) genomic DN...    44   5.1    1
(AP002481) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.1    1
(AP001539) Oryza sativa Japonica Group genomic DNA, chromoso...    44   5.1    1
(AM469640) Vitis vinifera contig VV78X271210.29, whole genom...    44   5.1    1
(AM441292) Vitis vinifera, whole genome shotgun sequence, co...    44   5.1    1
(EA707435) Sequence 86314 from patent US 7365185.                  44   5.1    1
(EA687220) Sequence 66099 from patent US 7365185.                  44   5.1    1
(DJ032301) BIOMARKERS OF CYCLIN-DEPENDENT KINASE MODULATION.       44   5.1    1
(DD399490) COMPOSITIONS AND METHODS FOR THE DIAGNOSIS AND TR...    44   5.1    1
(DD035999) Full length cDNA.                                       44   5.1    1
(CS539586) Sequence 173 from Patent WO2007012811.                  44   5.1    1
(CS494159) Sequence 1 from Patent WO2007006911.                    44   5.1    1
(CS350680) Sequence 64 from Patent WO2006013561.                   44   5.1    1
(CS042297) Sequence 2851 from Patent WO2005019258.                 44   5.1    1
(CS040565) Sequence 1119 from Patent WO2005019258.                 44   5.1    1
(CS033345) Sequence 2851 from Patent WO2005016962.                 44   5.1    1
(CS031613) Sequence 1119 from Patent WO2005016962.                 44   5.1    1
(CQ843082) Sequence 1729 from Patent EP1440981.                    44   5.1    1
(CT824639) Human DNA sequence from clone XX-HCC1954_10I14.         44   5.1    1
(BC017847) Homo sapiens centrosomal protein 350kDa, mRNA (cD...    44   5.1    1
(AL390718) Human DNA sequence from clone RP11-502H18 on chro...    44   5.1    1
(AK126046) Homo sapiens cDNA FLJ44058 fis, clone TESTI4035063.     44   5.1    1
(AF287356) Homo sapiens centrosome-associated protein 350 mR...    44   5.1    1
(AF228727) Homo sapiens chromosome 8 clone CTC-215C12 map 8q...    44   5.1    1
(AC009622) Homo sapiens chromosome , clone RP11-207A4, compl...    44   5.1    1
(AB007949) Homo sapiens mRNA for KIAA0480 protein, partial cds.    44   5.1    1
(AC219263) Bos taurus clone CH240-334L21, WORKING DRAFT SEQU...    44   5.1    1
(AC209069) Zea mays chromosome 10 clone CH201-373G20; ZMMBBc...    44   5.1    1
(BC033619) Homo sapiens centrosomal protein 350kDa, mRNA (cD...    44   5.1    1
(ET013251) MUGQ_CH252P316K24T7_CP589_086 CHORI-252 Vervet Mo...    44   5.1    1
(EI247280) OR__Ba0048K17.f OR__Ba Oryza rufipogon genomic cl...    44   5.1    1
(EI077937) hhf0004dc06.g1 hhf Oryza nivara genomic clone hhf...    44   5.1    1
(DX497690) Cpl39617 Papaya Genomic DNA BAC Library Carica pa...    44   5.1    1
(DQ037933) Pan troglodytes CAP350 gene, VIRTUAL TRANSCRIPT, ...    44   5.1    1
(DQ037932) Homo sapiens CAP350 gene, VIRTUAL TRANSCRIPT, par...    44   5.1    1
(CW856048) she2h38-37.g_018.ab1 Whole-genome shotgun library...    44   5.1    1
(CC450392) ZMMBBc0326L21f ZMMBBc Zea mays subsp. mays genomi...    44   5.1    1
(DT735190) EST1169040 Aquilegia cDNA library Aquilegia formo...    44   5.1    1
(DB636387) Homo sapiens testis cDNA, RIKEN full-length enric...    44   5.1    1
(DB293290) Homo sapiens cDNA clone VESEN1000680, 5' end, mRN...    44   5.1    1
(DB085772) Homo sapiens cDNA clone TESTI4033165, 5' end, mRN...    44   5.1    1
(CN422366) 17000423781848 GRN_EB Homo sapiens cDNA 5', mRNA ...    44   5.1    1
(AI758286) ty05e06.x1 NCI_CGAP_Ut3 Homo sapiens cDNA clone I...    44   5.1    1
(BU740024) UI-E-EO0-ahw-h-02-0-UI.s1 UI-E-EO0 Homo sapiens c...    44   5.1    1
(BQ226563) AGENCOURT_7585192 NIH_MGC_92 Homo sapiens cDNA cl...    44   5.1    1
(FG130889) a1322 Periplaneta americana Whole Organism cDNA L...    44   5.1    1
(EY504647) CBBP7623.rev CBBP Hirudo medicinalis hermaphrodit...    44   5.1    1
(EY484181) CBBP13429.rev CBBP Hirudo medicinalis hermaphrodi...    44   5.1    1
(CP000848) Rickettsia rickettsii str. 'Sheila Smith', comple...    44   5.1    1
(CP000847) Rickettsia akari str. Hartford, complete genome.        44   5.1    1
(CP000766) Rickettsia rickettsii str. Iowa, complete genome.       44   5.1    1
(CP000683) Rickettsia massiliae MTU5, complete genome.             44   5.1    1
(CP000053) Rickettsia felis URRWXCal2, complete genome.            44   5.1    1
(BX548174) Prochlorococcus marinus MED4 complete genome.           44   5.1    1
(AP008934) Staphylococcus saprophyticus subsp. saprophyticus...    44   5.1    1
(AE008679) Rickettsia conorii str. Malish 7, section 111 of ...    44   5.1    1
(BJ396903) Dictyostelium discoideum cDNA clone:dds44j08, 5' ...    38   6.0    2
(BJ335867) Dictyostelium discoideum cDNA clone:dda51i20, 5' ...    38   6.4    2
(BJ393912) Dictyostelium discoideum cDNA clone:dds33i02, 5' ...    38   7.6    2
(BZ729436) OGFBL81TC ZM_0.7_1.5_KB Zea mays genomic clone ZM...    34   7.8    2
(BJ396620) Dictyostelium discoideum cDNA clone:dds43g11, 5' ...    38   8.7    2
(BJ369898) Dictyostelium discoideum cDNA clone:ddc52n09, 5' ...    38   8.7    2
(EJ240119) 1095328032382 Global-Ocean-Sampling_GS-27-01-01-1...    34   8.8    2
(CJ443240) Macaca fascicularis mRNA, clone: QccE-20788, 5' e...    34   8.8    2
(AC131128) Rattus norvegicus clone CH230-23C17, *** SEQUENCI...    30   9.1    2

>(BJ363042) Dictyostelium discoideum cDNA clone:ddc24b23, 5' end,
           single read.
          Length = 535

 Score =  860 bits (434), Expect(2) = 0.0
 Identities = 434/434 (100%)
 Strand = Plus / Plus


Query: 102 gaaattcttagcagtcttatgtatttttatcttaacagttgcttttgcttatgcaaatca 161
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 gaaattcttagcagtcttatgtatttttatcttaacagttgcttttgcttatgcaaatca 161


Query: 162 ttatggttgttatactaataatccatgtggtgccggtagaatttgctataccatgaaggg 221
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 162 ttatggttgttatactaataatccatgtggtgccggtagaatttgctataccatgaaggg 221


Query: 222 ttcttgtaattgtattgaaatttcaaaatgctttgatgtaacattagaatctagtaaaaa 281
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 ttcttgtaattgtattgaaatttcaaaatgctttgatgtaacattagaatctagtaaaaa 281


Query: 282 atcagaatgggacttaaacggaactcattttgctcaatatgatttccaaattaaaaataa 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 atcagaatgggacttaaacggaactcattttgctcaatatgatttccaaattaaaaataa 341


Query: 342 taatttagttactgatatctcaaatctcttcattggtgttaatccaaacattggtgcaaa 401
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taatttagttactgatatctcaaatctcttcattggtgttaatccaaacattggtgcaaa 401


Query: 402 ggattatgtccaaatttggaatatcagaagaatggaaaatggtgaacttactctcccaac 461
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 ggattatgtccaaatttggaatatcagaagaatggaaaatggtgaacttactctcccaac 461


Query: 462 ttacattccagcaattgaaagaaacactacctttggttttggtgcaattattgcaggtca 521
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 ttacattccagcaattgaaagaaacactacctttggttttggtgcaattattgcaggtca 521


Query: 522 caatgaaccaaact 535
           ||||||||||||||
Sbjct: 522 caatgaaccaaact 535

 Score = 48.1 bits (24), Expect(2) = 0.0
 Identities = 27/27 (100%)
 Strand = Plus / Plus


Query: 1  actgttggcctactggnattaacaatc 27
          |||||||||||||||||||||||||||
Sbjct: 1  actgttggcctactggnattaacaatc 27

Lambda     K      H
    1.37    0.711     1.31

Matrix: blastn matrix:1 -3
Number of Sequences: 92845959
Number of Hits to DB: 555,764,527
Number of extensions: 34808004
Number of successful extensions: 3159454
Number of sequences better than 10.0: 103
Length of query: 544
Length of database: 95,242,211,685
Length adjustment: 23
Effective length of query: 521
Effective length of database: 93,106,754,628
Effective search space: 48508619161188
Effective search space used: 48508619161188
X1: 11 (21.8 bits)
S2: 22 (44.1 bits)
protein update 2009. 7.10
Homology vs Protein 
Query= Contig-U14249-1 (Contig-U14249-1Q) /CSM_Contig/Contig-U14249-1Q.Seq.d
         (544 letters)

Database: nrp_B
           3,236,559 sequences; 1,051,180,864 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromoso...    39   0.088
AC116977_84(AC116977|pid:none) Dictyostelium discoideum chromoso...    38   0.20
T18270(T18270) hypothetical protein - slime mold (Dictyostelium ...    36   0.75
CP000776_725(CP000776|pid:none) Campylobacter hominis ATCC BAA-3...    34   2.2
CP000140_671(CP000140|pid:none) Parabacteroides distasonis ATCC ...    33   4.8
AF179413_1(AF179413|pid:none) Dendroides canadensis antifreeze p...    33   4.8
CP001390_1705(CP001390|pid:none) Geobacter sp. FRC-32, complete ...    33   4.8
AF036333_7(AF036333|pid:none) Diatraea saccharalis densovirus co...    33   6.3
AP006841_1615(AP006841|pid:none) Bacteroides fragilis YCH46 DNA,...    33   6.3
AF179414_1(AF179414|pid:none) Dendroides canadensis antifreeze p...    33   6.3
AF036333_6(AF036333|pid:none) Diatraea saccharalis densovirus co...    33   6.3
(O71155) RecName: Full=Coat protein VP1/VP2/VP3/VP4; AltName: Fu...    33   6.3
BC098618_1(BC098618|pid:none) Danio rerio zgc:112329, mRNA (cDNA...    32   8.2

>AC116956_44(AC116956|pid:none) Dictyostelium discoideum chromosome
           2 map 1418423-1684967 strain AX4, complete sequence.
          Length = 121

 Score = 38.9 bits (89), Expect = 0.088
 Identities = 20/87 (22%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
 Frame = +1

Query: 259 VTLESSKKSEWDLNGTHFAQYDFQIKNNNLVTDISNLFIGVNPNIGAKDYVQIWNIRRME 438
           +T+  +  S W+ NG  F+ +D +++N           +GV+ N+   +   +W++ ++
Sbjct: 23  LTISQALTSSWNHNGQPFSVWDVRVRNTGKAIVFGATIVGVS-NL---ELENVWSVEQIS 78

Query: 439 NGELTLPTYIP---AIERNTTFGFGAI 510
           + + + P YI     ++  T F FG I
Sbjct: 79  SNKFSFPKYISQNGGLKNGTYFNFGYI 105

Lambda     K      H
   0.318    0.134    0.401

Gapped
Lambda     K      H
   0.267   0.0410    0.140

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3236559
Number of Hits to DB: 771,671,666
Number of extensions: 14850548
Number of successful extensions: 36618
Number of sequences better than 10.0: 13
Number of HSP's gapped: 36596
Number of HSP's successfully gapped: 13
Length of query: 181
Length of database: 1,051,180,864
Length adjustment: 120
Effective length of query: 61
Effective length of database: 662,793,784
Effective search space: 40430420824
Effective search space used: 40430420824
Neighboring words threshold: 12
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 30 (16.2 bits)
PSORT 

 psg: 0.99  gvh: 0.71  alm: 0.47  top: 0.43  tms: 0.00  mit: 0.27  mip: 0.07
 nuc: 0.00  erl: 0.00  erm: 0.00  pox: 0.00  px2: 0.00  vac: 0.00  rnp: 0.00
 act: 0.00  caa: 0.00  yqr: 0.00  tyr: 0.00  leu: 0.00  gpi: 0.00  myr: 0.00
 dna: 0.00  rib: 0.00  bac: 0.00  m1a: 0.00  m1b: 0.00  m2 : 0.00  mNt: 0.00
 m3a: 0.00  m3b: 0.00  m_ : 1.00 

	 56.0 %: extracellular, including cell wall
	 12.0 %: nuclear
	 12.0 %: endoplasmic reticulum
	  8.0 %: mitochondrial
	  8.0 %: vacuolar
	  4.0 %: cytoplasmic

>> prediction for Contig-U14249-1 is exc
VS (DIR, S) 0
VH (FL, L) 0
VF (FL, S) 0
AH (FL, L) 0
AF (FL, S) 0
SL (DIR, L) 0
SS (DIR, S) 0
SH (FL, L) 0
SF (FL, S) 0
CH (FL, L) 1
CF (FL, S) 0
FCL (DIR, L) 0
FC (DIR, S) 0
FC-IC (SUB) 0