Contig-U14247-1 |
Contig ID |
Contig-U14247-1 |
Contig update |
2002.12.18 |
Contig sequence |
|
Gap |
no gap |
Contig length |
750 |
Chromosome number (1..6, M) |
1 |
Chromosome length |
4919822 |
Start point |
1180813 |
End point |
1181451 |
Strand (PLUS/MINUS) |
PLUS |
Number of clones |
1 |
Number of EST |
1 |
Link to clone list |
U14247 |
List of clone(s) |
|
Translated Amino Acid sequence |
|
Translated Amino Acid sequence (All Frames) |
|
own update |
2004. 6.10 |
Homology vs CSM-cDNA |
|
dna update |
2008.12.20 |
Homology vs DNA |
Query= Contig-U14247-1 (Contig-U14247-1Q) /CSM_Contig/Contig-U14247-1Q.Seq.d (750 letters)
Database: ddbj_A 92,845,959 sequences; 95,242,211,685 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value N
(BJ377457) Dictyostelium discoideum cDNA clone:ddc24k14, 3' ... 652 0.0 2 (AC231213) Choloepus hoffmanni clone CH281-153A2, WORKING DR... 40 0.018 5 (AF003138) Caenorhabditis elegans cosmid F12B6, complete seq... 40 0.037 3 (AC115598) Dictyostelium discoideum chromosome 2 map 581427-... 38 0.13 6 (AC115612) Dictyostelium discoideum chromosome 2 map 6245135... 48 0.48 1 (AC176947) Strongylocentrotus purpuratus clone R3-34B06, WOR... 48 0.48 1 (CZ293197) cp99h06.r Candida parapsilosis Random Genomic Lib... 48 0.48 1 (CZ287343) cp52a06.f Candida parapsilosis Random Genomic Lib... 48 0.48 1 (CZ280682) cp12g09.f Candida parapsilosis Random Genomic Lib... 48 0.48 1 (CT126189) Sus scrofa genomic clone PigE-187D4, genomic surv... 48 0.48 1 (AM053813) Eudiplodinium maggii EST, clone Em07_C04. 48 0.48 1 (AC151077) Bos taurus clone CH240-191O10, WORKING DRAFT SEQU... 36 0.98 2 (AC151193) Bos taurus clone CH240-136K18, *** SEQUENCING IN ... 36 0.98 2 (BZ388235) EINAS71TR EI_10_12_KB Entamoeba invadens genomic ... 38 1.3 2 (AC116330) Dictyostelium discoideum chromosome 2 map 3191214... 40 1.4 5 (EK098780) 1092962061072 Global-Ocean-Sampling_GS-31-01-01-1... 36 1.5 3 (BV376896) S231P611RH10.T0 BedlingtonTerrier Canis familiari... 46 1.9 1 (AX345923) Sequence 994 from Patent WO0200928. 46 1.9 1 (AC162706) Bos taurus clone CH240-116H19, WORKING DRAFT SEQU... 46 1.9 1 (AC161396) Bos taurus clone CH240-69P7, WORKING DRAFT SEQUEN... 46 1.9 1 (AC223385) Bos taurus clone CH240-420J15, WORKING DRAFT SEQU... 46 1.9 1 (AC185722) Bos taurus clone RP42-269L1, WORKING DRAFT SEQUEN... 46 1.9 1 (AC185721) Bos taurus clone RP42-268N1, WORKING DRAFT SEQUEN... 46 1.9 1 (AC163126) Bos taurus clone CH240-126J22, WORKING DRAFT SEQU... 46 1.9 1 (CR956578) Equus caballus GSS, BAC clone CH241-110G2, T7 end... 46 1.9 1 (CC534449) CH240_412F24.T7 CHORI-240 Bos taurus genomic clon... 46 1.9 1 (DR034499) 17176.2 Swollen Stolon Solanum tuberosum cDNA clo... 46 1.9 1 (CK717350) 17176 Swollen Stolon Solanum tuberosum cDNA, mRNA... 46 1.9 1 (FG078722) UI-FF-IH0-aao-m-22-0-UI.r1 Ceratitis capitata adu... 46 1.9 1 (CR382399) Plasmodium falciparum chromosome 6, complete sequ... 34 2.2 7 (AC006751) Caenorhabditis elegans clone Y39G10, *** SEQUENCI... 40 2.8 6 (AC034296) Homo sapiens chromosome 13 clone RP11-438I6 map 1... 44 2.9 3 (CQ869999) Sequence 420 from Patent WO2004074320. 34 3.5 2 (EF444987) Homo sapiens immunoglobulin superfamily, member 4... 34 3.5 2 (AC231319) Choloepus hoffmanni clone CH281-702O10, WORKING D... 40 3.5 3 (AC200590) Rhesus Macaque BAC CH250-308E4 () complete seque... 34 3.6 2 (AB017654) Homo sapiens genomic DNA, chromosome 11q23.2, clo... 34 3.6 2 (AP003167) Homo sapiens genomic DNA, chromosome 11q clone:RP... 34 3.7 2 (AC051650) Homo sapiens chromosome 11 clone RP11-243C19 map ... 34 3.7 2 (AP000462) Homo sapiens genomic DNA, chromosome 11q clone:B4... 34 3.7 2 (DC041942) Xenopus laevis NBRP cDNA clone:xlk119o14ex, 5' end. 38 4.1 2 (EJ267316) 1095351023714 Global-Ocean-Sampling_GS-27-01-01-1... 36 4.4 2 (AM466205) Vitis vinifera, whole genome shotgun sequence, co... 36 4.7 4 (AC166315) Medicago truncatula chromosome 7 BAC clone mth2-5... 40 5.0 3 (BI502181) kt86d03.y1 Strongyloides ratti L2 pAMP1 v1 Chiape... 32 5.0 2 (AC091885) Homo sapiens chromosome 5 clone RP11-116O11, comp... 36 6.1 7 (AC176329) Strongylocentrotus purpuratus clone R3-3012D18, W... 38 6.7 6 (BF336074) QV4-CT0491-100800-347-h11 CT0491 Homo sapiens cDN... 38 6.7 2 (CU571359) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 40 7.1 5 (EK379723) 1095469455867 Global-Ocean-Sampling_GS-31-01-01-1... 34 7.4 3 (CU468254) Zebrafish DNA sequence from clone CH73-374J3 in l... 44 7.5 1 (BX322555) Zebrafish DNA sequence from clone DKEY-19D21 in l... 44 7.5 1 (BV440136) S237P6107RD7.T0 PortugueseWaterDog Canis familiar... 44 7.5 1 (AC158364) Mus musculus BAC clone RP23-187J8 from chromosome... 44 7.5 1 (AC125207) Mus musculus BAC clone RP23-220C16 from 8, comple... 44 7.5 1 (AC159651) Pan troglodytes BAC clone CH251-495E21 from chrom... 44 7.5 1 (AC159464) Pan troglodytes BAC clone CH251-505P8 from chromo... 44 7.5 1 (EU081054) Carlowrightia torreyana trnS-trnG intergenic spac... 44 7.5 1 (EU081053) Carlowrightia texana trnS-trnG intergenic spacer,... 44 7.5 1 (EU081052) Carlowrightia serpyllifolia trnS-trnG intergenic ... 44 7.5 1 (CU633895) Podospora anserina genomic DNA chromosome 4, supe... 44 7.5 1 (DD010735) Diagnosis of known genetic Parameters within the ... 44 7.5 1 (AX344561) Sequence 12 from Patent WO0200932. 44 7.5 1 (AC087423) Sus scrofa clone RP44-55G2, complete sequence. 44 7.5 1 (EU220112) Solenopsis invicta isolate LP-745/a putative odor... 44 7.5 1 (AL359436) Human DNA sequence from clone RP11-513N16 on chro... 44 7.5 1 (AL139189) Human DNA sequence from clone RP11-94F16 on chrom... 44 7.5 1 (AC006484) Homo sapiens chromosome 5, clone hRPK.448_K_10, c... 44 7.5 1 (AC160420) Bos taurus clone CH240-82O23, WORKING DRAFT SEQUE... 44 7.5 1 (AC156959) Bos taurus clone CH240-71A10, WORKING DRAFT SEQUE... 44 7.5 1 (AC153457) Bos taurus clone CH240-17M12, WORKING DRAFT SEQUE... 44 7.5 1 (AC133236) Rattus norvegicus clone CH230-284B10, *** SEQUENC... 44 7.5 1 (AC109428) Rattus norvegicus clone CH230-286I21, WORKING DRA... 44 7.5 1 (CU633583) Pig DNA sequence *** SEQUENCING IN PROGRESS *** f... 44 7.5 1 (AC079421) Mus musculus chromosome 16 clone RP23-105J18, WOR... 44 7.5 1 (AL354684) Human DNA sequence *** SEQUENCING CANCELLED *** f... 44 7.5 1 (AC219534) Bos taurus clone CH240-330D2, WORKING DRAFT SEQUE... 44 7.5 1 (AC182929) Bos taurus clone CH240-273P14, WORKING DRAFT SEQU... 44 7.5 1 (AC166460) Bos taurus clone CH240-176C6, WORKING DRAFT SEQUE... 44 7.5 1 (EK564264) 1095521033062 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.5 1 (EK529846) 1095516004743 Global-Ocean-Sampling_GS-32-01-01-1... 44 7.5 1 (AM639772) Entamoeba dispar GSS, clone dispar69b10.q1k. 44 7.5 1 (EJ273641) 1095366003828 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.5 1 (EJ151090) 1092343762510 Global-Ocean-Sampling_GS-27-01-01-1... 44 7.5 1 (ED626208) GM_WBa0024A23.r GM_WBa Glycine max genomic clone ... 44 7.5 1 (DU105350) JBnY024D24F Brassica napus BAC library JBnY Brass... 44 7.5 1 (CE782150) tigr-gss-dog-17000330661258 Dog Library Canis lup... 44 7.5 1 (CE253961) tigr-gss-dog-17000336272378 Dog Library Canis lup... 44 7.5 1 (ES277403) AJAG-aaa17c09.g1 Aph cDNA-InfSeedling Aphanomyces... 44 7.5 1 (DW259223) UI-S-GG1-aaz-l-24-0-UI.s1 UI-S-GG1 Euprymna scolo... 44 7.5 1 (AU294023) Zinnia elegans cDNA, clone:Z8785, primer:M13 forw... 44 7.5 1 (DN200454) USDA-FP_138518 Citrus root weevil whole body adul... 44 7.5 1 (CA072445) SCEPAM1016C04.g AM1 Saccharum officinarum cDNA cl... 44 7.5 1 (BE820647) GM700012B20H3 Gm-r1070 Glycine max cDNA clone Gm-... 44 7.5 1 (FC832682) CBHI4654.fwd CBHI Metridium senile tentacle Metri... 44 7.5 1 (EV272761) GLMBN74TF JCVI-SOY2 Glycine max cDNA 5', mRNA seq... 44 7.5 1 (CP000111) Prochlorococcus marinus str. MIT 9312, complete g... 44 7.5 1 (AY770626) Mycoplasma pullorum 16S ribosomal RNA gene, parti... 44 7.5 1 (D31785) Pichia canadensis mitochondrial genomic DNA, comple... 42 8.1 2 (AL359265) Human DNA sequence from clone RP11-195C7 on chrom... 38 9.8 4
>(BJ377457) Dictyostelium discoideum cDNA clone:ddc24k14, 3' end, single read. Length = 741
Score = 652 bits (329), Expect(2) = 0.0 Identities = 347/347 (100%) Strand = Plus / Minus
Query: 404 ccagtaaagaatacaaatcaacaaaatgaatcagttcatagaatttattcaaccattcaa 463 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 348 ccagtaaagaatacaaatcaacaaaatgaatcagttcatagaatttattcaaccattcaa 289
Query: 464 caatatacattatggttatttaaaaagattgaaattcaatttattacagttaatgttttc 523 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 288 caatatacattatggttatttaaaaagattgaaattcaatttattacagttaatgttttc 229
Query: 524 gatagtttagaaatcgaggattttaaaaagaaattcctatcaactgtatccgatcataat 583 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 228 gatagtttagaaatcgaggattttaaaaagaaattcctatcaactgtatccgatcataat 169
Query: 584 aaagaatttattaaaatgtctttnggagactcaacatttctctcattgccttcatcataa 643 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 168 aaagaatttattaaaatgtctttnggagactcaacatttctctcattgccttcatcataa 109
Query: 644 tcgtattaatangaccaacaagaaagcagaagaattagaaacaantnacaactaattgaa 703 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 108 tcgtattaatangaccaacaagaaagcagaagaattagaaacaantnacaactaattgaa 49
Query: 704 aatcaagcacaaattanaattcacncacatctaatcgccaacaacaa 750 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 48 aatcaagcacaaattanaattcacncacatctaatcgccaacaacaa 2
Score = 618 bits (312), Expect(2) = 0.0 Identities = 312/312 (100%) Strand = Plus / Minus
Query: 13 aacatttgcaaatctatcattggattgtatcctaagggtattgagtgcagtattattaga 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 739 aacatttgcaaatctatcattggattgtatcctaagggtattgagtgcagtattattaga 680
Query: 73 acaaagggttgtttttgtatgtgataatttatcaatactatcatcatgttgtttctcaat 132 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 679 acaaagggttgtttttgtatgtgataatttatcaatactatcatcatgttgtttctcaat 620
Query: 133 gatatcattaatacatccattaaaatggcaaggtttattcgtaccaattttaccacaaaa 192 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 619 gatatcattaatacatccattaaaatggcaaggtttattcgtaccaattttaccacaaaa 560
Query: 193 tcttttagattatcttgaagcacctgtaccttttattgttggtgtttctcatattaatag 252 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 559 tcttttagattatcttgaagcacctgtaccttttattgttggtgtttctcatattaatag 500
Query: 253 aagaaatttcgatggtttaatagttgatataaaatcaaataaaataacttataatcgttg 312 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 499 aagaaatttcgatggtttaatagttgatataaaatcaaataaaataacttataatcgttg 440
Query: 313 ttcacaaccacc 324 |||||||||||| Sbjct: 439 ttcacaaccacc 428
Lambda K H 1.37 0.711 1.31
Matrix: blastn matrix:1 -3 Number of Sequences: 92845959 Number of Hits to DB: 849,967,822 Number of extensions: 54942692 Number of successful extensions: 4823184 Number of sequences better than 10.0: 101 Length of query: 750 Length of database: 95,242,211,685 Length adjustment: 24 Effective length of query: 726 Effective length of database: 97,308,875,965 Effective search space: 70646243950590 Effective search space used: 70646243950590 X1: 11 (21.8 bits) S2: 22 (44.1 bits)
|
protein update |
2009. 7.10 |
Homology vs Protein |
|
PSORT |
|
VS (DIR, S) |
0 |
VH (FL, L) |
0 |
VF (FL, S) |
0 |
AH (FL, L) |
0 |
AF (FL, S) |
0 |
SL (DIR, L) |
0 |
SS (DIR, S) |
0 |
SH (FL, L) |
0 |
SF (FL, S) |
0 |
CH (FL, L) |
1 |
CF (FL, S) |
0 |
FCL (DIR, L) |
0 |
FC (DIR, S) |
0 |
FC-IC (SUB) |
0 |